RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3805
(139 letters)
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 170 bits (433), Expect = 3e-52
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+ELV +PDL EEA ++ + ++Q LG S +EG LR D NVSV RR LGT+
Sbjct: 145 IELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSV-RRVGEPLGTK 203
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
E+KN+ S + V A+ +EI RQ +L +G V T ++ + +T MR KE
Sbjct: 204 VEIKNLNSFKSVQRALEYEIRRQTEILRRGEKVKQATMGFEEGSGKTYPMRTKE 257
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA
complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga
maritima}
Length = 482
Score = 166 bits (422), Expect = 2e-50
Identities = 52/114 (45%), Positives = 71/114 (62%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V +PD+S EA +++L I++ LG ST M++GALR DAN+SV + R
Sbjct: 156 IEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNR 215
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
EVKN+ S R V A+ +E R V +E+G V ETR +D ATK TVSMR KE
Sbjct: 216 VEVKNMNSFRFVERALEYEFERIVKAMERGEDVERETRGWDMATKITVSMRGKE 269
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Length = 483
Score = 164 bits (419), Expect = 4e-50
Identities = 46/114 (40%), Positives = 71/114 (62%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+V +PD+ +EA A +++L I+Q G S KM+EG+LR DAN+S++ K GT+
Sbjct: 149 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTK 208
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
+E+KN+ S V + +E RQ L GG + ETR +D +T +T+ MR KE
Sbjct: 209 AELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKE 262
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi
protein complex, ligase, protein biosynthesis; HET: ADP;
2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Length = 478
Score = 164 bits (418), Expect = 7e-50
Identities = 49/114 (42%), Positives = 73/114 (64%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
ME+V +PD+ EEA +++L I++ G S M++G LR D NVS++ + + GTR
Sbjct: 152 MEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTR 211
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
E+KN+ S R V A+ +EI RQ+ ++E+GG VV ETR +D T +T MR KE
Sbjct: 212 VEIKNVNSFRFVQKALEYEIERQINVVEEGGEVVQETRTFDPQTGKTYPMRTKE 265
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 104 bits (261), Expect = 3e-27
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+ PD+ E+A + K + L+ K G +R D NVS+ K G R
Sbjct: 188 IEISTTPDIHHPEQAKVVAKFIGDALRATKK--VKRGLGTIRQDLNVSI------KGGAR 239
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRD 112
E+K + + + + E+ RQ+ LL+ + + + D
Sbjct: 240 IEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTD 291
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 91.4 bits (227), Expect = 1e-22
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+E+ DP +SD ++ + ++ IL+ K G +R D N+S+ + G R
Sbjct: 183 VEITTDPSMSDPQQLREVAYQIGQILRSTR---VKRGLGTIRQDLNISI------RDGAR 233
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATK---------RTVSMR 111
EVK + + + V E+ RQ++L+E + + + +
Sbjct: 234 VEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVEDKIFDVSEVFADTESRIIS 293
Query: 112 DKENI 116
E++
Sbjct: 294 SAESV 298
Score = 62.9 bits (153), Expect = 1e-12
Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 7/114 (6%)
Query: 1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
+ + P G E A K+ + + + G + G
Sbjct: 310 IGVEIQPGRRLGTEMADYAKK--RGVSGIFHTDELPAYGITEEEVRGLR-DAVGASQGDA 366
Query: 61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
+ + A E++R+ + QG V ETR
Sbjct: 367 VVMVAHERVT--AENALREVIRRAEMAIQG--VPEETRKALPDGNTQYLRPLPT 416
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.355
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,934,730
Number of extensions: 104335
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 9
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)