RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3805
         (139 letters)



>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B, GatB, N-terminal domain
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 290

 Score =  109 bits (273), Expect = 1e-30
 Identities = 46/115 (40%), Positives = 71/115 (61%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   +EA A +++L  I+Q  G S  KM+EG+LR DAN+S++     K GT+
Sbjct: 146 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTK 205

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKEN 115
           +E+KN+ S   V   + +E  RQ   L  GG +  ETR +D +T +T+ MR KE 
Sbjct: 206 AELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKEG 260


>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln)
           amidotransferase subunit E, GatE {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 319

 Score = 79.4 bits (195), Expect = 3e-19
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+  DP +SD ++   +  ++    Q L ++  K   G +R D N+S++       G R
Sbjct: 183 VEITTDPSMSDPQQLREVAYQIG---QILRSTRVKRGLGTIRQDLNISIRD------GAR 233

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVV----VNETRAYDAATKRTVSMRDKEN 115
            EVK +  +  +   V  E+ RQ++L+E    +      ETR        T  +R    
Sbjct: 234 VEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGPEETRKAL-PDGNTQYLRPLPT 291


>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln)
           amidotransferase subunit E, GatE {Pyrococcus abyssi
           [TaxId: 29292]}
          Length = 321

 Score = 75.6 bits (185), Expect = 8e-18
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+   PD+   E+A  + K +        T   K   G +R D NVS++         R
Sbjct: 184 IEISTTPDIHHPEQAKVVAKFIGD--ALRATKKVKRGLGTIRQDLNVSIKGGA------R 235

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVV----VNETRAYDAATKRTVSMRDKEN 115
            E+K +  +  +   +  E+ RQ+ LL+    +      ETR        T  MR    
Sbjct: 236 IEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGPEETRRAL-PDGNTEYMRPLPG 293


>d2b5id2 g.18.1.1 (D:103-165) Interleukin-2 receptor alpha chain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 24.5 bits (53), Expect = 2.0
 Identities = 6/13 (46%), Positives = 6/13 (46%)

Query: 30 GTSTCKMQEGALR 42
            S CKM  G  R
Sbjct: 41 AESVCKMTHGKTR 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 440,707
Number of extensions: 16817
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 5
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.6 bits)