Query psy3807
Match_columns 483
No_of_seqs 416 out of 3517
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 17:56:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.1E-26 3.7E-31 234.9 28.4 329 107-479 8-432 (491)
2 3o7q_A L-fucose-proton symport 99.8 9.9E-19 3.4E-23 173.7 16.5 271 162-481 48-409 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.8 1.6E-18 5.6E-23 172.7 13.8 287 163-481 51-411 (451)
4 4aps_A DI-OR tripeptide H+ sym 99.6 4.5E-15 1.5E-19 149.6 19.4 138 335-479 305-448 (491)
5 2gfp_A EMRD, multidrug resista 99.6 5.7E-16 2E-20 150.4 5.6 266 164-479 24-352 (375)
6 2cfq_A Lactose permease; trans 99.6 2.6E-17 9E-22 162.4 -4.8 116 350-481 261-377 (417)
7 4gc0_A D-xylose-proton symport 99.4 5.8E-14 2E-18 141.4 3.8 72 1-82 149-244 (491)
8 2xut_A Proton/peptide symporte 99.2 6.7E-12 2.3E-16 127.4 7.5 46 434-479 422-467 (524)
9 3o7q_A L-fucose-proton symport 99.0 2.5E-09 8.6E-14 105.6 14.4 153 311-477 25-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 98.9 7.4E-09 2.5E-13 103.9 11.5 152 314-481 15-174 (491)
11 1pw4_A Glycerol-3-phosphate tr 98.9 3.6E-09 1.2E-13 104.8 8.8 139 330-481 45-183 (451)
12 2xut_A Proton/peptide symporte 98.9 1.3E-08 4.6E-13 103.0 12.5 135 331-480 30-175 (524)
13 2gfp_A EMRD, multidrug resista 98.8 8.8E-09 3E-13 99.5 10.1 136 329-480 16-151 (375)
14 2cfq_A Lactose permease; trans 97.9 2.8E-06 9.5E-11 83.2 2.1 61 330-390 24-85 (417)
15 2g9p_A Antimicrobial peptide l 41.5 13 0.00043 18.6 1.3 14 367-380 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.1e-26 Score=234.88 Aligned_cols=329 Identities=26% Similarity=0.434 Sum_probs=225.1
Q ss_pred hHHHHHHHHHHhhhhhhccccccccCchhhhhhhccccccccceecCchHHHHHHHHHhhhhccCccCChhhhHHHHHHH
Q psy3807 107 FHLTYTILSAMLGMFQFGYNTGVINAPEKVTMLGMFQFGYNTGVINAPEKNIEKFFKDVYKERNLVDMTDEKAKIFYSVA 186 (483)
Q Consensus 107 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
+........++++.+++|| |.++++.+.+.+...+. .. .+.++...+...+++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gy---------------------d~~~i~~~~~~~~~~~~----~~--~~~~~~~~~~~~g~~ 60 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGY---------------------DTAVISGTVESLNTVFV----AP--QNLSESAANSLLGFC 60 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------HHHGGGGTHHHHHHHHT----GG--GCCCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhc----CC--CCCCcccHHHHHHHH
Confidence 3444455556677788888 45555555544332221 11 122333445566899
Q ss_pred HHHHHHHHHHHHHhhhhhccccCCchHhh---------------------------------------------------
Q psy3807 187 VSIFAIGGMLGGFSGGSIADKFGRGGLGT--------------------------------------------------- 215 (483)
Q Consensus 187 ~~~~~~~~~ig~~~~g~l~dr~GR~~~~~--------------------------------------------------- 215 (483)
++++.+|.++|++++|+++||+||++...
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV 140 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999943322
Q ss_pred -------------------------HHHHHHHHHHHHHHHHccccc------cCCCCchhHHHHHHHHHHHHhc------
Q psy3807 216 -------------------------VNQLAVTLGLLISQILGIEPI------LGTDEGWPVLLAMLGMFQFGYN------ 258 (483)
Q Consensus 216 -------------------------~~~~~~~~g~~~~~~~~~~~~------~~~~~~w~~~~~~~~i~~~~~~------ 258 (483)
..+.+...|.+.++.++.... ......||+.+.+..++.++.+
T Consensus 141 G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4gc0_A 141 GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTV 220 (491)
T ss_dssp HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcC
Confidence 222333333333333321110 0123468888877755544422
Q ss_pred --------cCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHhhcccccchhhhhccCCCchHHHHHHHHHHhhhcchHH
Q psy3807 259 --------TGVINAPEKVTLRKLRASTQIEVDIEEMRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGIN 330 (483)
Q Consensus 259 --------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (483)
.+++.+|+++.+++.+++++.+++..+.++..+++++.. .....+ .+++..+......++++.+.+
T Consensus 221 peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 294 (491)
T 4gc0_A 221 PESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG--GRLLMF----GVGVIVIGVMLSIFQQFVGIN 294 (491)
T ss_dssp CCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--THHHHS----CCTHHHHHHHHHHHHHHTCHH
T ss_pred CCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh--hHHHHh----cccHHHHHHHHHHHHHHhhhh
Confidence 567788888888877655443333333322222222111 111222 234566777778888889999
Q ss_pred HHHHhHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHhHHHHhhccCChHHHHhhhHHHHHHHHHHHHHHHHHhhhccchh
Q psy3807 331 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQE 410 (483)
Q Consensus 331 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 410 (483)
.+.+|.|.+.+..+.+..+......+.++..+++.+++++++||+|||+.++.+...+.++++.++......
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------- 366 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------- 366 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--------
Confidence 999999999999988888888888889999999999999999999999999999888888877766543321
Q ss_pred hhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCchhHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy3807 411 MIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTLNLP 479 (483)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 479 (483)
...+..++...++..+++.+++++.+++++|++|++.|+++.|++++++++++++++.++|.+.+.
T Consensus 367 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 367 ---APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred ---cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445556666777788888899999999999999999999999999999999999999987653
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.79 E-value=9.9e-19 Score=173.65 Aligned_cols=271 Identities=12% Similarity=0.070 Sum_probs=180.3
Q ss_pred HHHhhhhccCccCChhhhHHHHHHHHHHHHHHHHHHHHhhhhhccccCC-------------------------------
Q psy3807 162 FKDVYKERNLVDMTDEKAKIFYSVAVSIFAIGGMLGGFSGGSIADKFGR------------------------------- 210 (483)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~GR------------------------------- 210 (483)
+.+.+.+++|.+.++. +++.++..++..++.++.|+++||+||
T Consensus 48 ~~~~~~~~~g~s~~~~------g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (438)
T 3o7q_A 48 LLPQFQQAFTLTNFQA------GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121 (438)
T ss_dssp HHHHHHHHSCCCSHHH------HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCHHHH------HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 3455778888776655 899999999999999999999999999
Q ss_pred ------------------------------chHhhHHHHHHHHHHHHHHHHccccccCCCCc------------------
Q psy3807 211 ------------------------------GGLGTVNQLAVTLGLLISQILGIEPILGTDEG------------------ 242 (483)
Q Consensus 211 ------------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------------ 242 (483)
+...+..+....+|..+++.++..........
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYK 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhh
Confidence 55577888888899999888765433122222
Q ss_pred ------hhHHHHHHHHHHHH----hccCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHhhcccccchhhhhccCCCch
Q psy3807 243 ------WPVLLAMLGMFQFG----YNTGVINAPEKVTLRKLRASTQIEVDIEEMRVEQIAQQSESKISMSELLCSSTLRK 312 (483)
Q Consensus 243 ------w~~~~~~~~i~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (483)
||+.+.+.+++..+ ......+++.+ +.+++ +++++.+.++++++|+|+.+.
T Consensus 202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 262 (438)
T 3o7q_A 202 HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS------DNHSD-------------AKQGSFSASLSRLARIRHWRW 262 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT------TCCCC-------------SSTTSHHHHHHHHTTCSHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc------ccccc-------------ccccchhhhHHHHHhChHHHH
Confidence 99888666433222 11111111100 00000 011111234567787766554
Q ss_pred HHHHHHHHHHhhhcchHHHHHHhHHHH-Hhhc-CCCCcchhHHHHHHHHHHHHHHHhHHHHhhccCChHHHHhhhHHHHH
Q psy3807 313 PLIIGIVMQLSQQFSGINAVFYYSTAL-FESS-GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 390 (483)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~i 390 (483)
..+...+.. ........+.|.+ +++. |.+..+.+.......++.+++.++.+++.||+|||+.+..+..+.++
T Consensus 263 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 263 AVLAQFCYV-----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 332222211 1234555666666 7665 99998999999999999999999999999999999999888877766
Q ss_pred HHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCchhHHHHHHHHHHHHHHHHHH
Q psy3807 391 FSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVG 470 (483)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~~~~~~~ 470 (483)
+.+.+... + .........+...+.+. ..+..+.+..|.+|++ |+++.++.. .+.+++.++|
T Consensus 338 ~~~~~~~~---~-------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~ 398 (438)
T 3o7q_A 338 LCLISAFA---G-------------GHVGLIALTLCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVT 398 (438)
T ss_dssp HHHHHHHC---C-------------HHHHHHHHHHHHHHHTT-HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHH
T ss_pred HHHHHHHc---C-------------CcHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHH
Confidence 65544331 0 01112222333333332 3456677878999977 899999887 7889999999
Q ss_pred HHhHHhhhhcC
Q psy3807 471 LGFPTLNLPYR 481 (483)
Q Consensus 471 ~~~~~l~~~~g 481 (483)
.+.+.+.|..|
T Consensus 399 ~~~g~l~~~~g 409 (438)
T 3o7q_A 399 PVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999876
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.77 E-value=1.6e-18 Score=172.67 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=169.8
Q ss_pred HHhhhhccCccCChhhhHHHHHHHHHHHHHHHHHHHHhhhhhccccCC--------------------------------
Q psy3807 163 KDVYKERNLVDMTDEKAKIFYSVAVSIFAIGGMLGGFSGGSIADKFGR-------------------------------- 210 (483)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~GR-------------------------------- 210 (483)
.+.+.+++ .+.++. +++.++..++..++.+++|+++||+||
T Consensus 51 ~~~~~~~~-~s~~~~------g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (451)
T 1pw4_A 51 MPYLVEQG-FSRGDL------GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 123 (451)
T ss_dssp HHHTTSST-TCSSCH------HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHH
T ss_pred HHHHHHHh-ccHhHH------HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 45556666 665554 899999999999999999999999999
Q ss_pred ------------------------------chHhhHHHHHHHHHHHHHHHHccccccCCCCc-hhHHHHHHHHHHHH---
Q psy3807 211 ------------------------------GGLGTVNQLAVTLGLLISQILGIEPILGTDEG-WPVLLAMLGMFQFG--- 256 (483)
Q Consensus 211 ------------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~i~~~~--- 256 (483)
++..+..+....+|..+++.++.... ...+ ||+.|++.+++.++
T Consensus 124 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~g~w~~~f~~~~~~~~~~~~ 201 (451)
T 1pw4_A 124 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM--AWFNDWHAALYMPAFCAILVAL 201 (451)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--HHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHH
Confidence 34445555555566555555542211 2345 88887776443322
Q ss_pred ---hccCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHhhcccccchhhhhccCCCchHHHHHHHHHHhhhcchHHHHH
Q psy3807 257 ---YNTGVINAPEKVTLRKLRASTQIEVDIEEMRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVF 333 (483)
Q Consensus 257 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (483)
...++++++... .+.++.++.+ + ++.+++.+++...++...++++|++..+ ...+..++.. .+...+.
T Consensus 202 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~ 272 (451)
T 1pw4_A 202 FAFAMMRDTPQSCGL--PPIEEYKNDY-P-DDYNEKAEQELTAKQIFMQYVLPNKLLW----YIAIANVFVY-LLRYGIL 272 (451)
T ss_dssp HHHHHCCCSSTTTCC--CSCTTTCCC---------------CCTHHHHHHTSSCHHHH----HHHHHHHHHH-HHHHHHH
T ss_pred HHHhhccCCHhhcCC--CChhhhcccc-c-ccchhhhhcccccccchHHHHHcCHHHH----HHHHHHHHHH-HHHHHHH
Confidence 112221111000 0000000000 0 0000000001111111134455444332 2223223222 2445666
Q ss_pred HhHHHHHhh-cCCCCcchhHHHHHHHHHHHHHHHhHHHHhhcc--CChHHHHhhhHHHH-HHHHHHHHHHHHHhhhccch
Q psy3807 334 YYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM--GRRTLHLYGLGGMF-IFSIFITISLLIKEFFGFVQ 409 (483)
Q Consensus 334 ~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grr~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~ 409 (483)
.+.|.++++ .|.+..+.+......+++.+++.++.+++.||+ |||+.+..+..+.. ++.+.+...
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 341 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----------- 341 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------
Confidence 777888776 799988889999999999999999999999999 99998877765554 333322211
Q ss_pred hhhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCchhHHHHHHHHHHHH-HHHHHHHHhHHhhhhcC
Q psy3807 410 EMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWI-ANFVVGLGFPTLNLPYR 481 (483)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~g 481 (483)
.+...+......++...+ ..+..+....+..|.+|++.|+++.|+.+...++ +..+++.+.+.+.|..|
T Consensus 342 --~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 342 --PAGNPTVDMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp --CTTCHHHHHHHHHHHHHH-HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --cccCHHHHHHHHHHHHHH-HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000112222222222222 2233344567889999999999999999999999 99999999999988765
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.65 E-value=4.5e-15 Score=149.56 Aligned_cols=138 Identities=11% Similarity=-0.093 Sum_probs=89.5
Q ss_pred hHHHHHhh-cCCCCcchhHHHHHHHHHHHHHHHhHHHHhhccCChHHHH-----hhhHHHHHHHHHHHHHHHHHhhhccc
Q psy3807 335 YSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL-----YGLGGMFIFSIFITISLLIKEFFGFV 408 (483)
Q Consensus 335 ~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~-----~~~~~~~i~~~~~~~~~~~~~~~~~~ 408 (483)
+.|.+.++ .+.+..+.+.......+..+++..+.+++.||+|||+... .+..+.+++.+.+....... +
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 379 (491)
T 4aps_A 305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY---G-- 379 (491)
T ss_dssp HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC---C--
T ss_pred HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc---C--
Confidence 34445544 5666566777778888899999999999999999986544 55555555555444332111 0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCchhHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy3807 409 QEMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTLNLP 479 (483)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 479 (483)
...+...+.......+...+.+ ...+..+.++.|.+|++.|+++.|+.+...+++.++++.+.+.+.+.
T Consensus 380 -~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 380 -TSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp -CCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred -CCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0001112222222233222222 23455678899999999999999999999999999999999887654
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.59 E-value=5.7e-16 Score=150.45 Aligned_cols=266 Identities=14% Similarity=0.012 Sum_probs=166.4
Q ss_pred HhhhhccCccCChhhhHHHHHHHHHHHHHHHHHHHHhhhhhccccCC---------------------------------
Q psy3807 164 DVYKERNLVDMTDEKAKIFYSVAVSIFAIGGMLGGFSGGSIADKFGR--------------------------------- 210 (483)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~GR--------------------------------- 210 (483)
+.+.+++|.+.++. +++.++..++..++.++.|+++||+||
T Consensus 24 ~~~~~~~g~s~~~~------g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 97 (375)
T 2gfp_A 24 ADMARDLNVREGAV------QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAM 97 (375)
T ss_dssp HHHHTTSSSTTHHH------HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44567777765554 899999999999999999999999999
Q ss_pred -------------------------chHhhHHHHHHHHHHHHHHHHccccccCCCCchhHHHHHHHHHHHHhc---cCCC
Q psy3807 211 -------------------------GGLGTVNQLAVTLGLLISQILGIEPILGTDEGWPVLLAMLGMFQFGYN---TGVI 262 (483)
Q Consensus 211 -------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~i~~~~~~---~~~~ 262 (483)
++..+..+....+|..+++.++.... +..+||..+.+.++...+.. ....
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD--TMWNWRACYLFLLVLCAGVTFSMARWM 175 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56677778888888888887764332 34589999988765544322 1111
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHHHHHHHHhhcccccchhhhhccCCCchHHHHHHHHHHhhhcchHHHHHHhHHHHHhh
Q psy3807 263 NAPEKVTLRKLRASTQIEVDIEEMRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFES 342 (483)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (483)
+|+.+ .+ +++++.+.++++++|+|+.+...+...+. . .+......+.|.++++
T Consensus 176 ~~~~~-------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 228 (375)
T 2gfp_A 176 PETRP-------VD---------------APRTRLLTSYKTLFGNSGFNCYLLMLIGG----L-AGIAAFEACSGVLMGA 228 (375)
T ss_dssp CCCST-------TT---------------CCCCCTTTCSTHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHCSCSSHH
T ss_pred cccCC-------CC---------------cccccHHHHHHHHhcCcchHHHHHHHHHH----H-HHHHHHHHHHHHHHHH
Confidence 11000 00 01112234566777766544433222221 1 2334455555666555
Q ss_pred -cCCCCcchhHHHHHHHHHHHHHHHhHHHHhhccCChHHHHhhhHH-HHHHHHHHHHHHHHHhhhccchhhhhhHHHHHH
Q psy3807 343 -SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG-MFIFSIFITISLLIKEFFGFVQEMIDWMSYLSV 420 (483)
Q Consensus 343 -~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (483)
.|.+..+.+.......++.+++.++.+++.||++||. ..+... ...+...+.... .. +...+...
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~ 295 (375)
T 2gfp_A 229 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDW-FG----------VMNVWTLL 295 (375)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHH-HH----------HHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-hc----------cccHHHHH
Confidence 6777778888888889999999999999999988732 222222 111111111110 00 00122222
Q ss_pred HHHHHHHHHhccccccccceeeccccCCCchhHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy3807 421 ISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTLNLP 479 (483)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 479 (483)
....+...+.+. ..+....+..|..| +.|+++.|+.+....++..+++.+.+.+.+.
T Consensus 296 ~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 296 VPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233333333332 34556678889999 8999999999999999999999988887654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.58 E-value=2.6e-17 Score=162.41 Aligned_cols=116 Identities=9% Similarity=-0.052 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHhhccCChHHHHhhhHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHH
Q psy3807 350 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVF 429 (483)
Q Consensus 350 ~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (483)
.+....+..++.+++.++.++++||+|||+++..+..+.+++.+.+... . ..+..++...+...+
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T------------SALEVVILKTLHMFE 325 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C------------SHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c------------cHHHHHHHHHHHHHH
Confidence 3455566677888999999999999999999887776666554333211 0 111111211111212
Q ss_pred hccccccccceeeccccCCCchhHHHHHH-HHHHHHHHHHHHHHhHHhhhhcC
Q psy3807 430 FAVGPGSIPWMITAELFSQGPRPAAMSIA-VLVNWIANFVVGLGFPTLNLPYR 481 (483)
Q Consensus 430 ~~~~~~~~~~~~~~e~~p~~~R~~~~g~~-~~~~~~~~~~~~~~~~~l~~~~g 481 (483)
.. ...+..+.+++|.+|++.|+++.++. +..++++++++|.+.+.+.+..|
T Consensus 326 ~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g 377 (417)
T 2cfq_A 326 VP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred HH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC
Confidence 11 11122457889999999999999995 78888999999999999887654
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.41 E-value=5.8e-14 Score=141.41 Aligned_cols=72 Identities=29% Similarity=0.429 Sum_probs=60.3
Q ss_pred CccccCCcccccccchhhhhHHHHHHHHHHHHhccccccC------CCCCcchhh------------------ccccccc
Q psy3807 1 MYISEIAPLNLRGGLGTVNQLAVTLGLLISQILGIEPILG------TDEGWPVLL------------------DSRESDL 56 (483)
Q Consensus 1 ~yi~E~~p~~~RG~~~~~~~~~~~~G~~l~~~~~~~~~~~------~~~~Wr~~~------------------~sp~~l~ 56 (483)
+|++|++|+++||+..++.+.+...|.+++.++++..... ..++||+++ ||||||.
T Consensus 149 ~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~ 228 (491)
T 4gc0_A 149 MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLM 228 (491)
T ss_dssp HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHH
T ss_pred HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHH
Confidence 3789999999999999999999999999998887654321 345788876 9999999
Q ss_pred cccccccccccchhHHHHHHHHHhhc
Q psy3807 57 HRSELENYTFLPFSVMLAVFWLFTYK 82 (483)
Q Consensus 57 ~~~~~~~~~f~~~~~~~a~~~~~~~~ 82 (483)
.|+|.|| +...+.+.+
T Consensus 229 ~~~~~~~----------a~~~l~~~~ 244 (491)
T 4gc0_A 229 SRGKQEQ----------AEGILRKIM 244 (491)
T ss_dssp HTTCHHH----------HHHHHHHHH
T ss_pred HcCchhH----------HHHhHHHhc
Confidence 9999999 887776654
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.24 E-value=6.7e-12 Score=127.40 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=40.8
Q ss_pred cccccceeeccccCCCchhHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy3807 434 PGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTLNLP 479 (483)
Q Consensus 434 ~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 479 (483)
..+..+.+..|..|++.|++++|+.+...++++.+++.+.+.+.+.
T Consensus 422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455667889999999999999999999999999999999988763
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.03 E-value=2.5e-09 Score=105.58 Aligned_cols=153 Identities=10% Similarity=-0.054 Sum_probs=112.5
Q ss_pred chHHHHHHHHHHhhhcchHHHHHHhHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHhHHHHhhccCChHHHHhhhHHHHH
Q psy3807 311 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 390 (483)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~i 390 (483)
++.+...+...+...+ .........|.+.++.|.+..+.++......++..++.++.|+++||+|||+.++.+..+.++
T Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAV-ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 3334343333333322 335566677888899999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCchhHHHHHHHHHHHHHHHHHH
Q psy3807 391 FSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVG 470 (483)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~~~~~~~ 470 (483)
+.++........ ..+..++..++...+.+. ..+....+++|.+|++.|+++.++.+....++..+++
T Consensus 104 ~~~~~~~~~~~~------------~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 170 (438)
T 3o7q_A 104 GAALFWPAAEIM------------NYTLFLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAV 170 (438)
T ss_dssp HHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccc------------cHHHHHHHHHHHHhhHHH-hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 877764322111 112223333333333332 3344568889999999999999999999999999999
Q ss_pred HHhHHhh
Q psy3807 471 LGFPTLN 477 (483)
Q Consensus 471 ~~~~~l~ 477 (483)
.+.+.+.
T Consensus 171 ~~~~~l~ 177 (438)
T 3o7q_A 171 VFGQSLI 177 (438)
T ss_dssp HHTTHHH
T ss_pred HHHHHHH
Confidence 9998887
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.88 E-value=7.4e-09 Score=103.90 Aligned_cols=152 Identities=14% Similarity=0.054 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhhcchHHHHHHhHHHHHhh-----cCCCCcchhHHHHHHHHHHHHHHHhHHHHhhc-cCChHHHHhhhHH
Q psy3807 314 LIIGIVMQLSQQFSGINAVFYYSTALFES-----SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGG 387 (483)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr-~grr~~l~~~~~~ 387 (483)
....++..++..+..+.......+++.++ .|.+..+.++......++..++.++.|+++|| +|||+.+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 33444444444443333333444444455 89999999999999999999999999999999 8999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCc--hhHHHHHHHHHHHHH
Q psy3807 388 MFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGP--RPAAMSIAVLVNWIA 465 (483)
Q Consensus 388 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~g~~~~~~~~~ 465 (483)
.+++.+.+.... ..+..++..++...+.+ ...+...++.+|.+|++. |+++.++.+....++
T Consensus 95 ~~~~~~~~~~~~---------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 95 IMLGHIVLALPF---------------GASALFGSIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHHHHHHHHSCC---------------STTHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh---------------hHHHHHHHHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence 887776654310 11122222222222222 233556688899999988 777888888999999
Q ss_pred HHHHHHHhHHhhhhcC
Q psy3807 466 NFVVGLGFPTLNLPYR 481 (483)
Q Consensus 466 ~~~~~~~~~~l~~~~g 481 (483)
..+++.+.+.+.+..|
T Consensus 159 ~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 159 AFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999998877544
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.87 E-value=3.6e-09 Score=104.79 Aligned_cols=139 Identities=14% Similarity=-0.011 Sum_probs=105.2
Q ss_pred HHHHHhHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHhHHHHhhccCChHHHHhhhHHHHHHHHHHHHHHHHHhhhccch
Q psy3807 330 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQ 409 (483)
Q Consensus 330 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 409 (483)
.......|.+.++. .+..+.++......++..++.++.|+++||+|||+.++++..+.+++.+++.......
T Consensus 45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------- 116 (451)
T 1pw4_A 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT------- 116 (451)
T ss_dssp TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-------
T ss_pred HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc-------
Confidence 34556678888888 8999999999999999999999999999999999999999988888877766521100
Q ss_pred hhhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCchhHHHHHHHHHHHHHHHHHHHHhHHhhhhcC
Q psy3807 410 EMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTLNLPYR 481 (483)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g 481 (483)
. ..+..++..++...+.+ ...+....+++|.+|++.|+++.++......++..+++.+.+.+.+..|
T Consensus 117 --~--~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 117 --S--SIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp --S--SSSHHHHHHHHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred --c--cHHHHHHHHHHHHHHhh-hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 01122222333333322 2334556788999999999999999999999999999999988777654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.85 E-value=1.3e-08 Score=102.96 Aligned_cols=135 Identities=14% Similarity=0.036 Sum_probs=98.0
Q ss_pred HHHHhHH-HHHhhcC------CCCcchhHHHHHHHHHHHHHHHhHHHHhhcc-CChHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3807 331 AVFYYST-ALFESSG------LSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-GRRTLHLYGLGGMFIFSIFITISLLIK 402 (483)
Q Consensus 331 ~~~~~~~-~~~~~~g------~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-grr~~l~~~~~~~~i~~~~~~~~~~~~ 402 (483)
....+.+ ++.++.| .+..+.+.......++..++.++.|+++||+ |||+.+.++..+.+++.+++....
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--- 106 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE--- 106 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc---
Confidence 3334444 4445678 8999999999999999999999999999999 999999988888877776655421
Q ss_pred hhhccchhhhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCchhHHHHH---HHHHHHHHHHHHHHHhHHhhhh
Q psy3807 403 EFFGFVQEMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSI---AVLVNWIANFVVGLGFPTLNLP 479 (483)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~---~~~~~~~~~~~~~~~~~~l~~~ 479 (483)
...+..++..++...+.+ ...+....+.+|.+|++.|+++.+. .+....++..+++.+.+.+.+.
T Consensus 107 -----------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 -----------HSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp -----------SCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred -----------ccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 011222222233332322 2345566888999999999877666 8888999999999998888765
Q ss_pred c
Q psy3807 480 Y 480 (483)
Q Consensus 480 ~ 480 (483)
.
T Consensus 175 ~ 175 (524)
T 2xut_A 175 F 175 (524)
T ss_dssp S
T ss_pred c
Confidence 4
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.84 E-value=8.8e-09 Score=99.46 Aligned_cols=136 Identities=11% Similarity=0.047 Sum_probs=104.6
Q ss_pred HHHHHHhHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHhHHHHhhccCChHHHHhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy3807 329 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFV 408 (483)
Q Consensus 329 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 408 (483)
........|.+.++.|.+..+.+.......+...++.++.++++||+|||+.+..+..+..++.+.......
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------- 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS-------- 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--------
Confidence 344555667778889999999999999999999999999999999999999999998888887776655311
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhccccccccceeeccccCCCchhHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q psy3807 409 QEMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTLNLPY 480 (483)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 480 (483)
.+..++...+...+.+ ...+....+.+|.+|++.|+++.++.+....++..+++.+.+.+.+..
T Consensus 88 -------~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 151 (375)
T 2gfp_A 88 -------LTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW 151 (375)
T ss_dssp -------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred -------HHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 1122222222222222 234556678899999999999999999999999999999988887653
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.91 E-value=2.8e-06 Score=83.21 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=50.4
Q ss_pred HHHHHhHHHHHh-hcCCCCcchhHHHHHHHHHHHHHHHhHHHHhhccCChHHHHhhhHHHHH
Q psy3807 330 NAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 390 (483)
Q Consensus 330 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~i 390 (483)
.....+.|.+++ +.|.+..+.+.......++..++.++.|+++||+|||+.++.+..+..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 444456666665 4799999999999999999999999999999999999999877665543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=41.49 E-value=13 Score=18.59 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=11.1
Q ss_pred hHHHHhhccCChHH
Q psy3807 367 ISIPLMDRMGRRTL 380 (483)
Q Consensus 367 ~~~~l~dr~grr~~ 380 (483)
+.+.++.|+|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788999999865
Done!