RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3807
(483 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 194 bits (495), Expect = 1e-56
Identities = 122/416 (29%), Positives = 185/416 (44%), Gaps = 87/416 (20%)
Query: 136 VTMLGMFQFGYNTGVINAPEKNIEKFFKDVYKERNLVDMTDEKA---------------- 179
V LG F FGY+TGVI A I+ F +
Sbjct: 4 VAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGS 63
Query: 180 ------------KIFYSVAVSIFAIGGMLGGFSGGS------------------------ 203
K + +F IG +L GF+ G
Sbjct: 64 LFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVP 123
Query: 204 -----IADKFGRGGLGTVNQLAVTLGLLISQILGIEPILGTDE-GWPVLLAM---LGMFQ 254
IA K RG LG++ QL +T G+L++ I+G+ ++ GW + L + +
Sbjct: 124 MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILL 183
Query: 255 FGYNTGVINAPE--------------KVTLRKLRASTQIEVDIEEMRVEQIAQQSESKIS 300
G++ PE + L KLR + ++ +I+E + K S
Sbjct: 184 LI---GLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKAS 240
Query: 301 MSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAV 360
EL T+R+ L++G+++Q+ QQ +GINA+FYYS +FE+ GLS+ TI +G V
Sbjct: 241 WLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLL--VTIIVGVV 298
Query: 361 MVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSV 420
T I+I L+DR GRR L L G GM I + + ++LL +++
Sbjct: 299 NFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVA-------KSKGAGIVAI 351
Query: 421 ISILGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTL 476
+ IL F+ FFA+G G +PW+I +ELF G RP AM+IA NW+ANF++G FP +
Sbjct: 352 VFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPII 407
Score = 47.7 bits (114), Expect = 9e-06
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 1 MYISEIAPLNLRGGLGTVNQLAVTLGLLISQILGIEPILGTDE-GWPVLL 49
MYISEIAP LRG LG++ QL +T G+L++ I+G+ ++ GW + L
Sbjct: 124 MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPL 173
Score = 41.5 bits (98), Expect = 7e-04
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 64 YTFLPFSVMLAVFWLFTYKKVPETKNKTFEEIVALF 99
Y FL F+ +L +F LF + VPETK +T EEI LF
Sbjct: 414 YVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
Score = 28.4 bits (64), Expect = 8.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 245 VLLAMLGMFQFGYNTGVINAPEKVT 269
L+A LG F FGY+TGVI A +
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLI 26
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 174 bits (443), Expect = 7e-49
Identities = 94/287 (32%), Positives = 149/287 (51%), Gaps = 25/287 (8%)
Query: 210 RGGLGTVNQLAVTLGLLISQILGI-EPILGTDEGWPVLLAMLGMFQFGYNTGVINAPE-- 266
RG L ++ QLA+T G+L++ G + L GW + L + + G+ PE
Sbjct: 161 RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESP 220
Query: 267 ------------KVTLRKLRASTQIEVDIEEMRVEQIAQQSESKISM-----SELLCSST 309
+ +L +LR ++ + ++ + ++S K S+ S +
Sbjct: 221 RWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRR 280
Query: 310 LRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISI 369
+R+ L +G+V+Q QQF+GINA+ YYS +FE++G+S A +I +GAV T ++I
Sbjct: 281 IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAI 340
Query: 370 PLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVF 429
L+DR GRR L L G GM I + I FV ++++ IL F+ F
Sbjct: 341 FLVDRFGRRPLLLIGAAGMAICLFVLGI-----LGASFVTGSSKSSGNVAIVFILLFIAF 395
Query: 430 FAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTL 476
FA+G G +PW+I +E+F RP +SIAV NW+ANF+VG FPT+
Sbjct: 396 FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM 442
Score = 49.6 bits (119), Expect = 2e-06
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1 MYISEIAPLNLRGGLGTVNQLAVTLGLLISQILGI-EPILGTDEGWPVLLDS 51
MY+SEIAP LRG L ++ QLA+T G+L++ G + L GW + L
Sbjct: 150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL 201
Score = 38.1 bits (89), Expect = 0.009
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 139 LGMFQFGYNTGVINA--PEKNIEKFFKDVYKERNLVDMTDEKAKIFYSVAVSIFAIGGML 196
+G FGY+TGVI E F +D + + + VSIF +GG +
Sbjct: 35 IGGLMFGYDTGVIGGALALPAFEFKFT--------SANSDSYSSSLWGLVVSIFLVGGFI 86
Query: 197 GGFSGGSIADKFGR-GGLGTVNQLAVTLGLLIS 228
G G ++D+FGR L + L V +L+
Sbjct: 87 GALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119
Score = 34.6 bits (80), Expect = 0.12
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 64 YTFLPFSVMLAVFWLFTYKKVPETKNKTFEEI 95
F+ F + + +F Y +PETK +T EEI
Sbjct: 450 GVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 104 bits (261), Expect = 5e-24
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 15/166 (9%)
Query: 314 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD 373
++IG+++ + QQF GIN V YY+ +F++ G S A TI +G + +T T+++I +D
Sbjct: 272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD 331
Query: 374 RMGRRTLHLYGLGGMFI--FSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVFFA 431
+ GR+ L + G GM I FS+ ++++S+L +V FA
Sbjct: 332 KFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG-------------IVALLSMLFYVAAFA 378
Query: 432 VGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTLN 477
+ G + W++ +E+F R A++IAV WIAN+ V FP ++
Sbjct: 379 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 136 VTMLGMFQFGYNTGVINAPEKNIEKFFKDVYKERNLVDMTDEKAKIFYSVAVSIFAIGGM 195
V LG FGY+T VI+ +++ F ++++ A V+ IG +
Sbjct: 16 VATLGGLLFGYDTAVISGTVESLNTVFVAP------QNLSESAANSLLGFCVASALIGCI 69
Query: 196 LGGFSGGSIADKFGR 210
+GG GG +++FGR
Sbjct: 70 IGGALGGYCSNRFGR 84
Score = 37.4 bits (87), Expect = 0.015
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 1 MYISEIAPLNLRGGLGTVNQLAVTLGLLISQILGIEPILGTDEGWPVLLDSRESDLHRSE 60
MYI+EIAP ++RG L + NQ A+ G L+ + D W R
Sbjct: 143 MYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWR-------- 194
Query: 61 LENYTFLPFSVMLAVFWLFTYKKVPET 87
Y F ++ +F + Y VPET
Sbjct: 195 ---YMFASEAIPALLFLMLLY-FVPET 217
Score = 32.0 bits (73), Expect = 0.72
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 69 FSVMLAVFWLFTYKKVPETKNKTFEEIVALFR 100
+ M + LF +K VPETK KT EE+ AL+
Sbjct: 442 YGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 51.9 bits (125), Expect = 3e-07
Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 15/173 (8%)
Query: 304 LLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVT 363
L L + L++ + F + Y L E GLS A G +
Sbjct: 167 ALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226
Query: 364 MTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISI 423
++ L DR+GRR L L L G+ + ++ + + L L + +
Sbjct: 227 GALLGGLLSDRLGRRRLLL--LIGLLLAALGLLLLALAP----------SLALLLVALLL 274
Query: 424 LGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTL 476
LGF + FA EL R A + + + L L
Sbjct: 275 LGFGLGFAFPALLTLAS---ELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and
related proteins; solute-binding domain. Human SGLT2
(hSGLT2) is a high-capacity, low-affinity glucose
transporter, that plays an important role in renal
glucose reabsorption. It is encoded by the SLC5A2 gene
and expressed almost exclusively in renal proximal
tubule cells. Mutations in hSGLT2 cause Familial Renal
Glucosuria (FRG), a rare autosomal defect in glucose
transport. hSGLT2 is a major drug target for regulating
blood glucose levels in diabetes. hSGLT2 is predicted to
have 14 membrane-spanning regions. This subgroup belongs
to the solute carrier 5 (SLC5) transporter family.
Length = 583
Score = 36.1 bits (83), Expect = 0.045
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 360 VMVTMTIISIP--LMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSY 417
V +T +I++P L R G + + LY IF IS+ + F+Q+ + W Y
Sbjct: 93 VYLTAGVITMPQYLKKRFGGQRIRLYLSVLSLFLYIFTKISVDMFSGAVFIQQALGWNIY 152
Query: 418 LSVISILGFVVFFAVGPGSIPWMIT 442
SVI++LG + + V G M T
Sbjct: 153 ASVIALLGITMIYTVTGGLAALMYT 177
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 35.5 bits (82), Expect = 0.049
Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 13/159 (8%)
Query: 310 LRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISI 369
L + ++ +++ L A+ Y E GLS A G + ++
Sbjct: 199 LLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLG 258
Query: 370 PLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVF 429
L DR+GRR L L + + ++ + + L + + L + +LGF
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESS----------LWLLVALLLLGFGAG 308
Query: 430 FAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFV 468
+ ++L + R A + + +
Sbjct: 309 LVFPA---LNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 32.6 bits (75), Expect = 0.44
Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 28/162 (17%)
Query: 285 EMRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQL----SQQFSGINAVFYYSTALF 340
E VE ++ K+ + + +PL++ ++M L + G V+Y + L
Sbjct: 209 ERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL- 267
Query: 341 ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL 400
G E A + GA ++ I+ L+ + G++ L L GL + + L
Sbjct: 268 ---GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL----LLLAVGYLLLY 320
Query: 401 IKEFFGFVQEMIDWMSYLSVISILGFVVFFAVG---PGSIPW 439
+ SV+ I+ ++ VG +PW
Sbjct: 321 -------------FTPAGSVVLIVVALIIAGVGTGIANPLPW 349
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 31.5 bits (72), Expect = 1.1
Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 22/153 (14%)
Query: 311 RKPLIIGIVMQLSQQFSGINAVFYYSTA-----LFESSGLSEKTAKFTTIGIGAVMVTMT 365
RKP ++G+ + ++ FY T L ++ GLS +A + +
Sbjct: 218 RKPFLLGLGLVIAT-----TTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITI 272
Query: 366 IISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILG 425
+S L DR+GRR + + + ++ + + + + ++ +
Sbjct: 273 PLSGALSDRIGRRPVLIIFTVLAALLAVPL--------LMALLDSGSFTL-FFFLVLGMA 323
Query: 426 FVVFFAVGPGSIPWMITAELFSQGPRPAAMSIA 458
+ GP ELF R S+A
Sbjct: 324 LIGGMYTGPMGS---FLPELFPTEVRYTGASLA 353
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 31.1 bits (71), Expect = 1.3
Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 52/222 (23%)
Query: 276 STQIEVDIEEMRVEQIAQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYY 335
++ ++ + +E+ S+ + S +L + LRK + +++ + A YY
Sbjct: 291 GKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT------TAFSYY 344
Query: 336 STALFES------------SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY 383
L SGL E AK +T++ I DR+GRR Y
Sbjct: 345 GLVLDLGNLGGNIYLDLFISGLVELPAKL-----------ITLLLI---DRLGRR----Y 386
Query: 384 GLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFV-VFFAVGPGSIPWMIT 442
+ + + LL+ FV + + + + L + F + ++ T
Sbjct: 387 TMAASLL--LAGVALLLL----LFVPVDLYF-----LRTALAVLGKFGITSAFQMVYLYT 435
Query: 443 AELFSQGPRPAAMSI----AVLVNWIANFVVGLGFPTLNLPY 480
AEL+ R + + A + + I+ F+V LG L LP
Sbjct: 436 AELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPL 477
Score = 31.1 bits (71), Expect = 1.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 161 FFKDVYKERNLVDMTDEKAKIFYSVAVSIFAIGGMLGGFSGGSIADKFGR 210
F + E +LV K + S F +G +LG F G ++D+FGR
Sbjct: 111 FSSTIVTEWDLVCEDAWKVDLT----QSCFFVGVLLGSFVFGYLSDRFGR 156
>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for
N-linked glycosylation [General function prediction
only].
Length = 773
Score = 31.3 bits (71), Expect = 1.3
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 14/126 (11%)
Query: 326 FSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL 385
+ A+ A K T I +VT+T++S+ L+ Y
Sbjct: 221 ILLLYALVLLVLAFL--------RGKKTDILGFVGLVTLTLLSL-LILPPLLGFSGYYYS 271
Query: 386 GGMFIFSIFITISL-----LIKEFFGFVQEMIDWMSYLSVISILGFVVFFAVGPGSIPWM 440
G + + L L+K F LS+ ILG ++ F +
Sbjct: 272 GFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALILGGLLLFLELLRAYILP 331
Query: 441 ITAELF 446
I+ L+
Sbjct: 332 ISGRLY 337
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and
related proteins; solute-binding domain. Human SGLT5 is
a glucose transporter, which also transports galactose.
It is encoded by the SLC5A10 gene, and is exclusively
expressed in the renal cortex. This subgroup belongs to
the solute carrier 5 (SLC5) transporter family.
Length = 604
Score = 31.1 bits (70), Expect = 1.4
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 360 VMVTMTIISIP--LMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSY 417
V ++ I+++P L R G + +Y + S+F IS + FVQ + W Y
Sbjct: 95 VYISSGIVTMPEYLQRRFGGERIRMYLSVLSLLLSVFTKISTDLYSGALFVQVCLGWNLY 154
Query: 418 LSVISILGFVVFFAVGPG 435
LS + +L + + G
Sbjct: 155 LSTVLMLVVTALYTIAGG 172
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl
transferase [Posttranslational modification, protein
turnover, chaperones].
Length = 699
Score = 30.9 bits (70), Expect = 1.7
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 20/138 (14%)
Query: 340 FESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD----RMGRRTLHLYGLGGMFIF-SIF 394
F+ GL+E + +G+ + +++PL+ R+G L G + F + F
Sbjct: 95 FQLIGLTEYPFGYNYVGMRFFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSF 154
Query: 395 ITISLLIKEFFGFVQEMIDWM-SYLSVISILGFVVFFAVGPGSIPWMITAELFSQGPRPA 453
+T S I ++D + V + F+ F P S W+ L G
Sbjct: 155 VTESRFI---------LLDSFLLFFIVAAAYCFLRFHRQQPFSRRWLKW--LLLTG---I 200
Query: 454 AMSIAVLVNWIANFVVGL 471
++ A+ V W+ F G+
Sbjct: 201 SLGCAISVKWVGLFTTGV 218
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 30.8 bits (70), Expect = 1.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 186 AVSIFAIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLIS 228
AVS+F +GG +G G +DK G G +N L G+L+S
Sbjct: 284 AVSMFELGGFIGALVAGWGSDKLFNGNRGPMN-LIFAAGILLS 325
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 30.0 bits (68), Expect = 2.6
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 189 IFAIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLISQILGIEPILGTDEGWPVLLA 248
+F GG++G G +AD+ G + L +L+ L +L L A
Sbjct: 293 LFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLL------LGA 346
Query: 249 MLGMFQFGYNTG 260
+ G F G +G
Sbjct: 347 IAGFFVNGGQSG 358
Score = 29.2 bits (66), Expect = 5.4
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 187 VSIFAIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLISQI 230
S IG G G +AD+ GR + + L ++ L+ +
Sbjct: 58 FSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCAL 101
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 30.3 bits (69), Expect = 2.8
Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 287 RVEQIAQQSES---KISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESS 343
RV +Q E + L + L L++ ++ L+ ++Y++ L
Sbjct: 198 RVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYVL---- 253
Query: 344 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 395
G + + IG A ++ + L R G++ L G+ I + +
Sbjct: 254 GNAGLFSVLLLIGTIAAILGAPLWP-WLAKRFGKKRTFLLGMLLAAIGLVLL 304
>gnl|CDD|150710 pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304).
Members of this family of hypothetical archaeal proteins
have no known function.
Length = 115
Score = 28.4 bits (64), Expect = 3.1
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 388 MFIFS---IFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVFFAVGP 434
M I + ++ ++ + + L + V+ FA+ P
Sbjct: 1 MEPIQIIAIVVLVAAILVIIVRIRKSRLSISDLLFWLFFWIVVLLFALFP 50
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 29.8 bits (67), Expect = 3.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 273 LRASTQIEVDIEEMRVEQIAQQSESKISMSE---LLCSSTLRKPLII 316
L + + V E+R E + QS S I M +LC S RK +I+
Sbjct: 652 LDSPETLSVIKPELRNELQSVQSNSCIEMGGNHCVLCDSVDRKKIIV 698
>gnl|CDD|227773 COG5486, COG5486, Predicted metal-binding integral membrane protein
[Function unknown].
Length = 283
Score = 29.4 bits (66), Expect = 3.8
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 426 FVVFFAVGPGSIPWMITAELF-------SQGPRPAAMSIAVLVNWIA 465
++ F VG ++ WM L S G R + ++ A+L A
Sbjct: 230 MLLLFVVGVMNLLWMALIALLVLIEKQTSPGRRLSRVAGALLAAAGA 276
>gnl|CDD|131213 TIGR02158, PA_CoA_Oxy3, phenylacetate-CoA oxygenase, PaaI subunit.
Phenylacetate-CoA oxygenase is comprised of a five gene
complex responsible for the hydroxylation of
phenylacetate-CoA (PA-CoA) as the second catabolic step
in phenylacetic acid (PA) degradation. Although the
exact function of this enzyme has not been determined,
it has been shown to be required for phenylacetic acid
degradation and has been proposed to function in a
multicomponent oxygenase acting on phenylacetate-CoA
[Energy metabolism, Other].
Length = 237
Score = 29.0 bits (65), Expect = 4.8
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 439 WMITAELFSQGPRPAAMSIAVLV--------NWIANFVVGLGFPTLNLP 479
W TAELF GP ++ A + W L TL LP
Sbjct: 152 WPYTAELFEAGPIDEELAEAGIAVDPATLQAAWEKEVNAVLNEATLTLP 200
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and
related proteins; solute binding domain. This subfamily
includes the solute-binding domain of SGLT proteins that
cotransport Na+ with various solutes. Its members
include: the human glucose (SGLT1, -2, -4, -5 ),
chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 29.2 bits (66), Expect = 5.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 390 IFSIFITISLLIKEFFG--FVQEMIDWMSYLSVISILGFVVFFAVGPG 435
IF IS + F G F+Q+ + W YLS+I +L + + G
Sbjct: 124 FLYIFTKISADL--FAGAIFIQQALGWNLYLSIIILLAITAVYTITGG 169
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 29.1 bits (66), Expect = 6.2
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 18/160 (11%)
Query: 310 LRKPLIIGIVMQLSQQFSGINAVF-YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIIS 368
LR+P ++ ++ +G A++ Y L +G S + G ++
Sbjct: 208 LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG 267
Query: 369 IPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVV 428
L DR RR L + ++L + ++ L F+
Sbjct: 268 GRLADRGPRRALIA-----ALLLLALALLALTF------------TGASPALALALLFLW 310
Query: 429 FFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFV 468
FA P + A S+ V + +
Sbjct: 311 GFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIAL 350
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 29.2 bits (66), Expect = 6.2
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 191 AIGGMLGGFS---GGSIADKFGRGGLGTVNQLAVTLGLLISQILGIEPILGTDEGWPVLL 247
+ ++G + GG ++D+ G G LAV +G+ ++ L + G G ++
Sbjct: 261 FLFPLIGALARPLGGWLSDRIG----GRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVV 316
Query: 248 AMLGMFQFGYNTGVINA 264
+ G+ N
Sbjct: 317 FVAVFLALFVFAGLGNG 333
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6
and related proteins; solute-binding domain. Human
SGLT6 (also called KST1, SMIT2) is a chiro-inositol
transporter, which also transports myo-inositol. It is
encoded by the SLC5A11 gene. Xenopus Na1-glucose
cotransporter type 1 (SGLT-1)-like protein is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 602
Score = 29.1 bits (65), Expect = 6.5
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 13/155 (8%)
Query: 327 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG 386
SGI A Y +F L+ F I I A + TM L R G + + ++ L
Sbjct: 67 SGIAATAYEWNGMFSVLVLA---WLFLPIYIAAGVTTMPEY---LQKRFGGKRIQIF-LA 119
Query: 387 GMFIF-SIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAEL 445
+++F IF IS+ + F+Q+ + W YL+V+ +L + V G + A +
Sbjct: 120 VLYLFIYIFTKISVDMYAGALFIQQALQWDLYLAVVGLLAITAVYTVAGG-----LAAVI 174
Query: 446 FSQGPRPAAMSIAVLVNWIANFVVGLGFPTLNLPY 480
++ + M I L+ +F GF L Y
Sbjct: 175 YTDALQTLIMLIGALILMGFSFAEVGGFEALQEKY 209
>gnl|CDD|227437 COG5106, RPF2, Uncharacterized conserved protein [Function
unknown].
Length = 316
Score = 28.4 bits (63), Expect = 7.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 291 IAQQSESKISMSELLCSSTLRKPLIIGIV 319
SE K + + + L+KP IG +
Sbjct: 33 YPGMSERKTLLDVICDTEALKKPKEIGFI 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.411
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,403,263
Number of extensions: 2621196
Number of successful extensions: 4490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4423
Number of HSP's successfully gapped: 244
Length of query: 483
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 382
Effective length of database: 6,457,848
Effective search space: 2466897936
Effective search space used: 2466897936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.2 bits)