RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3807
(483 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 7e-07
Identities = 70/461 (15%), Positives = 138/461 (29%), Gaps = 163/461 (35%)
Query: 68 PFSV--MLAVFWLFTYKKVPETKNKTFEEIVALFRTDDGLTFHLTY-------TILSAML 118
P + ++ F + V +K F++++ L T+ F Y + + +L
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE----FENCYLEGNDIHALAAKLL 109
Query: 119 GMFQFGYNTGVINAPEKVTMLGMFQFGYNT-GVINAPEKNIEK--FFKDVYKERNLVDMT 175
N V + + + P F+ V
Sbjct: 110 Q----------ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV---------G 150
Query: 176 DEKAKIFYSVAVSIFAIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLISQILGIEP 235
+ A++ +IF GG G+ D F
Sbjct: 151 EGNAQLV-----AIF------GGQ--GNTDDYF--------------------------- 170
Query: 236 ILGTDEGWPVLLAMLGMFQFGYNT--GVINAPEKVTLRKLRASTQIEVDIEEM--RVEQI 291
+E L L Y T ++ K + L + +D E++ + I
Sbjct: 171 ----EE-----LRDL------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 292 AQ--QSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKT 349
+ ++ S + L S + PLI G++ QL+ Y TA + G +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLI-GVI-QLAH---------YVVTA--KLLGFT--P 260
Query: 350 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQ 409
+ + GA + +++ ++ I + + FF V+
Sbjct: 261 GELRSYLKGATGHSQGLVT-----------------------AVAIAETDSWESFFVSVR 297
Query: 410 EMIDWMSYL--------SVISILGFVVFFAVGPG-SIP-WMIT------AELFS------ 447
+ I + ++ S+ ++ ++ +P M++ ++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 448 -QGPRPAAMSIAVLVNWIANFVVGLGFPT----LNLPYRAL 483
P + I+ LVN N VV G P LNL R
Sbjct: 358 SHLPAGKQVEIS-LVNGAKNLVVS-GPPQSLYGLNLTLRKA 396
Score = 47.4 bits (112), Expect = 1e-05
Identities = 89/545 (16%), Positives = 151/545 (27%), Gaps = 230/545 (42%)
Query: 28 LISQILG-----IEP--ILGTDEGWPVLLDS------RESDLHR--SELENYTFLPFSVM 72
L+ + LG +EP + D+ + L +D+H ++L +++
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN--DTTLV 117
Query: 73 LAVFWLFTYKKVPETKNKTFEEIV--ALFR-TDDGLTFHLTYTILSAMLGMFQFGYNTGV 129
+ Y + F++ ALFR +G L I FG
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQL-VAI---------FG----- 161
Query: 130 INAPEKVTMLGMFQFGYNTGVINAPEKNIEKFFK------DVYKE-------------RN 170
G Q G N + +F+ Y
Sbjct: 162 ----------G--Q-----G-------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 171 LVDMTDEKAKIF--------------------Y--SVAVSI----------FAIGGMLGG 198
L+ T + K+F Y S+ +S + + L G
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 199 FSGGSIADKFGRGGLGTVNQL---------------------AVTLGLLI---SQ----I 230
F+ G + +G G L A+T+ I
Sbjct: 258 FTPGELRSYL-KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 231 LGIEPILGTD-----EGWPV-LLAMLGMFQ-------FGYNT----------GVINAPEK 267
+ P + D EG P +L++ + Q N+ ++N +
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 268 --VT------------LRKLRASTQIEVDIEEMRVEQIAQQSESKISMSELLCSSTLRKP 313
V+ LRK +A + + +Q S+I SE RK
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGL---------DQ------SRIPFSE-------RKL 414
Query: 314 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD 373
S +F + + F +S L +S L K + A I IP+ D
Sbjct: 415 KF-------SNRFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKD-----IQIPVYD 461
Query: 374 -RMGRRTLHLYGLGGMFIFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVFFAV 432
G L L G I I ++ + W + + + F
Sbjct: 462 TFDGS---DLRVLSGSISERIVDCI----------IRLPVKWET-TTQFKATHILDF--- 504
Query: 433 GPGSI 437
GPG
Sbjct: 505 GPGGA 509
Score = 40.4 bits (94), Expect = 0.002
Identities = 51/297 (17%), Positives = 94/297 (31%), Gaps = 92/297 (30%)
Query: 24 TLGLLISQILGIEPILGTDEGWPVLLDSRESDLHRSELENYTFLPFSVMLAVFWLFTYKK 83
T G I I+ P+ T + + R ENY+ + F ++ +K
Sbjct: 1656 TYGFSILDIVINNPVNLT-----IHFGGEKGKRIR---ENYSAMIFETIVDGK--LKTEK 1705
Query: 84 VPETKNKTFEEIVALFRTDDGLTFHLT-YT---ILSAMLGMFQFGYNTGVINAPEKVTM- 138
+ + N+ FR++ GL T +T + F+ + G+I P T
Sbjct: 1706 IFKEINEHSTSYT--FRSEKGL-LSATQFTQPALTLMEKAAFEDLKSKGLI--PADATFA 1760
Query: 139 ---LGMFQFGYN-----TGVINAPEKNIEKFFKDVYKERNLVDMTDEKAKIFY-SVAVSI 189
LG Y V++ + + + +V FY + + +
Sbjct: 1761 GHSLGE----YAALASLADVMS---------IESLVE---VV---------FYRGMTMQV 1795
Query: 190 FAIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLISQILGIEPILGTDEGWPVLLAM 249
LG + G IA +N V + + +G GW V +
Sbjct: 1796 AVPRDELGRSNYGMIA----------INPGRVAASFSQEALQYVVERVGKRTGWLVEIV- 1844
Query: 250 LGMFQFGYNT--------GVINAPE------------KVTLRKLRASTQIEVDIEEM 286
YN G + A + K+ + +L+ S +E ++E
Sbjct: 1845 ------NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE-EVEGH 1894
Score = 31.6 bits (71), Expect = 0.85
Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 45/140 (32%)
Query: 373 DRMGRRTLHLYGLGGMFIFSIFITISL-----LIKEFFGF----VQEMIDWMSYLSVI-- 421
+R YG FSI + I + L F G ++E M + +++
Sbjct: 1647 NRADNHFKDTYG------FSI-LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 422 SILGFVVFFAVGPG--SIPWMITAEL-----FSQGPRPA--AMSIAVLVNWIANFVV--- 469
+ +F + S + L F+Q PA M A + + ++
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ---PALTLMEKAAFEDLKSKGLIPAD 1756
Query: 470 ----G--LGFPTLNLPYRAL 483
G LG Y AL
Sbjct: 1757 ATFAGHSLG------EYAAL 1770
Score = 30.8 bits (69), Expect = 1.5
Identities = 45/245 (18%), Positives = 66/245 (26%), Gaps = 71/245 (28%)
Query: 43 EGWPVLLDSRESDLHRSELENYTFLPFSVMLAVFWL---FTYKKVPETKNKTFEE---I- 95
E +P S + LEN +P S ML++ L V +T N +
Sbjct: 312 EAYPNT--SLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKT-NSHLPAGKQVE 367
Query: 96 VALFRTDD------------GLTFHLTYTILSAMLGMFQ-----------FGYNTGVINA 132
++L GL L A G+ Q F + +
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRK--AKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 133 P------EKVTMLGMFQFGYNTGVINAPEKNIEKFFKDVYKERNLVDMTDEKAKIFYSVA 186
P + L N NA + I VY + D+ I +
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-----VYDTFDGSDLRVLSGSISERIV 480
Query: 187 VSIF--------AIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLISQIL---GIEP 235
I F I D FG GG LG+L + G+
Sbjct: 481 DCIIRLPVKWETTTQ-----FKATHILD-FGPGGAS-------GLGVLTHRNKDGTGVRV 527
Query: 236 ILGTD 240
I+
Sbjct: 528 IVAGT 532
Score = 30.4 bits (68), Expect = 1.9
Identities = 56/296 (18%), Positives = 81/296 (27%), Gaps = 116/296 (39%)
Query: 205 ADKFGRGGLGTVNQLAVTLGLLISQILGIEPILGTDEGWPVLLAMLGMFQFGYNTGVINA 264
AD T G I I+ P+ T FG G
Sbjct: 1649 ADNH----------FKDTYGFSILDIVINNPVNLT-------------IHFGGEKG---- 1681
Query: 265 PEKVTLRKLRASTQIEVDIEEMRVEQI--AQQSESKI--SMSELLCSSTLRKPLIIGIVM 320
+++R + M E I + KI ++E S T R G+
Sbjct: 1682 ------KRIRENYS------AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGL-- 1725
Query: 321 QLSQ-QFSGINAVFYYSTALFE---SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG 376
LS QF+ A+ A FE S GL A F A G
Sbjct: 1726 -LSATQFTQP-ALTLMEKAAFEDLKSKGLIPADATF------A----------------G 1761
Query: 377 RRTLH-------LYGLGGMFIFSIFITISLLIKEFF-G-FVQEMI----DWMSYLSVISI 423
H L L + SI + ++ F+ G +Q + S +I
Sbjct: 1762 ----HSLGEYAALASLAD--VMSIESLVEVV---FYRGMTMQVAVPRDELGRSNYGMI-- 1810
Query: 424 LGFVVFFAVGPGSIPWMITAELFSQGPRPAAMSIAVLVNWIANFVVGLGFPTLNLP 479
A+ PG + + E LV I N+ N+
Sbjct: 1811 -------AINPGRVAASFSQEALQYVVERVGKRTGWLV-EIVNY---------NVE 1849
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 36.6 bits (85), Expect = 0.016
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 184 SVAVSIFAIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLISQILGIEPILGTDEGW 243
S A ++ G+ G G ++DK RG G + L+ + +
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG--VFFMTLVTIATIVYWMNPAGNPTV 348
Query: 244 PV-LLAMLGMFQFG 256
+ + ++G +G
Sbjct: 349 DMICMIVIGFLIYG 362
Score = 33.9 bits (78), Expect = 0.10
Identities = 27/207 (13%), Positives = 65/207 (31%), Gaps = 32/207 (15%)
Query: 281 VDIEEMRVEQI---AQQSESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFY--- 334
IEE + + +++E +++ ++ L L+ I + + + Y
Sbjct: 217 PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA----NVFVYLLRYGIL 272
Query: 335 -----YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 389
Y L E + + + + T++ + D++ R G+
Sbjct: 273 DWSPTY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV---- 325
Query: 390 IFSIFITISLLIKEFFGFVQEMIDWMSYLSVISILGFVVFFAVGPGSIPWMITAELFSQG 449
F +TI+ ++ + + + + F GP + + EL
Sbjct: 326 FFMTLVTIATIVYWMNPAG-------NPTVDMICMIVIGFLIYGPVMLIGLHALELA--- 375
Query: 450 PRPAAMSIAVLVNWIANFVVGLGFPTL 476
P+ AA + A + +
Sbjct: 376 PKKAAGTAAGFTGLFGYLGGSVAASAI 402
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.039
Identities = 32/202 (15%), Positives = 67/202 (33%), Gaps = 63/202 (31%)
Query: 24 TLGLLISQILGIEPILGTDE--------GWP---------VLLDSR-----ESDLHRSEL 61
L L+ ++ + ++ ++ P + L+ + E LHRS +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 62 ENY---------TFLPFSVMLAVFWLFTYKKVPETKNKTFEEIVALFRT---D------- 102
++Y +P + + + KN E + LFR D
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 103 ---DGLTFHLTYTILSAMLGMFQFGYNTGVI-NAP---EKVTMLGMFQFGYNTGVINAPE 155
D ++ + +IL+ L +F Y + N P V + F +I +
Sbjct: 507 IRHDSTAWNASGSILN-TLQQLKF-YKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 156 KNI---------EKFFKDVYKE 168
++ E F++ +K+
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQ 586
Score = 31.0 bits (69), Expect = 1.2
Identities = 42/302 (13%), Positives = 82/302 (27%), Gaps = 75/302 (24%)
Query: 27 LLISQILG--IEPILGTDEGWPVL------------LDSRESDLHRSELENYTFLPFSV- 71
+S I I L T + W + L+ E +R + + P S
Sbjct: 328 RRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 72 ----MLAVFWLFTYKKVPETKNKTFEEIVALFRTDDGLTFHLTYTILSAML----GMFQF 123
+L++ W K + + + T + +I + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYAL 445
Query: 124 ------GYNTGVINAPEKVTMLGM----FQF-GYNTGVINAPEKNIEKFFKDVYKERNLV 172
YN + + + + G++ I PE+ F+ V+ +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMVF-----L 498
Query: 173 DMTDEKAKIFYSVAVSIFAIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLISQILG 232
D + KI D G++ L I
Sbjct: 499 DFRFLEQKI----------------------RHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 233 IEPILGTDEGWPVLLAMLGMFQFGYNTGVINAPEKVTLRKLRASTQIEVD-IEEMRVEQI 291
+P E L+ + F +I + LR + E + I E +Q+
Sbjct: 537 NDP---KYER---LVNAILDFLPKIEENLICSKY---TDLLRIALMAEDEAIFEEAHKQV 587
Query: 292 AQ 293
+
Sbjct: 588 QR 589
Score = 29.8 bits (66), Expect = 2.5
Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 33/171 (19%)
Query: 27 LLISQILGIEPILGTDEGWPVLLDSRESDLHRSELENYTFLPFSVMLAVFWLFTYKKVPE 86
LL ++ + L + LD L E+++ +L + + +P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--------LLLKYLDCRPQDLPR 320
Query: 87 TKNKTFEEIVALF--RTDDGL-TF----HLTYTILSAMLGMFQFGYNTGVINAPEKVTML 139
T +++ DGL T+ H+ L+ ++ +N E
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--------LNVLEPAEYR 372
Query: 140 GMFQ----FGYNTGVINAPEKNIEKFFKDVYKERNLVDMTDEKAKIFYSVA 186
MF F + + P + + DV + +++ + ++ K YS+
Sbjct: 373 KMFDRLSVFPPSA---HIPTILLSLIWFDV-IKSDVMVVVNKLHK--YSLV 417
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.43
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 11/30 (36%)
Query: 266 EKVTLRKLRASTQ-----------IEVDIE 284
EK L+KL+AS + I+ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 26.6 bits (59), Expect = 6.8
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 77 WLFTYKKVPETKNKTFEEIVALFRTD-DGLTFHLTYTILSAMLG-MFQFGYNTGVINA 132
W++ V E + +V TD D + + Y + G +FQ TG I+A
Sbjct: 2 WVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHA 59
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 27.9 bits (61), Expect = 6.8
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 78 LFTYKKVPETKNKTFEEIVALFRT----DDGLTFHLTYTILSAMLGMFQFGYNTGVINAP 133
+++ P + F D + F + MF F NT I P
Sbjct: 218 IYSSNSGPTRREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGP 277
Query: 134 EKVTMLGMFQFGYNTGVINAPEKNIEKFFKDVYKER 169
E+V V+ + +++K KD
Sbjct: 278 EEVDNDK------EYLVLTLTKNDLDKANKDKANRY 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.411
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,362,155
Number of extensions: 462660
Number of successful extensions: 1136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1133
Number of HSP's successfully gapped: 41
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.9 bits)