RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3807
         (483 letters)



>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP
           2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 378

 Score = 28.0 bits (62), Expect = 2.7
 Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 62  ENYTFLPFSVMLAVFWLFTYKKVPETKNKTFEEIVALFRTDDGLTFHLTYTILSAMLGMF 121
               F  F+       L   KK+ E      E I      D      L     +A     
Sbjct: 280 SIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLE----TAAGAAI 335

Query: 122 QFGYNTGVINAP 133
           +F  N   +N P
Sbjct: 336 RFFDNAIGVNVP 347


>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB),
           N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 213

 Score = 27.6 bits (61), Expect = 2.9
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 231 LGIEPILGTDEGWPVLLAMLGMFQFGYNTGVINAPEKVTLRKLRASTQIEVDIEEMRVEQ 290
           LGI  +        +   M      GYN G++   +   L+      +   D E+  + Q
Sbjct: 100 LGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQ 159

Query: 291 IAQQSESKISMSEL-LC 306
            A Q   ++ +S + L 
Sbjct: 160 AAVQQTKEMDLSVVRLM 176


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 183 YSVAVSIFAIGGMLGGFSGGSIADKFGRGGLGTVNQLAVTLGLLISQILGIEPILGTDEG 242
              A+S  +I      F  GS++D+           +     +L    +       +   
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--ATSSIAV 118

Query: 243 WPVLLAMLGMFQFGY 257
             VLL + G FQ   
Sbjct: 119 MFVLLFLCGWFQGMG 133



 Score = 27.0 bits (58), Expect = 5.6
 Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 14/129 (10%)

Query: 344 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLLIKE 403
           G S     F   GI         I   + DR   R     GL       +F+        
Sbjct: 55  GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF------ 108

Query: 404 FFGFVQEMIDWMSYLSVISILGFVVFFAVGPGSIPWM-ITAELFSQGPRPAAMSIAVLVN 462
                  +    S ++V+ +L F+  +  G G  P        +SQ  R   +S+    +
Sbjct: 109 -------VPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 161

Query: 463 WIANFVVGL 471
            +   +  L
Sbjct: 162 NVGGGIPPL 170


>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins
           {Swine vesicular disease virus [TaxId: 12075]}
          Length = 271

 Score = 26.7 bits (59), Expect = 7.2
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 256 GYNTGVINAPEKVTLR-KLRASTQIEVDIEEMRVEQIAQQSES 297
            +   VIN  +   LR KL   T    D+E   V    Q+  +
Sbjct: 76  NFAYWVINTRQVAQLRRKLEMFTYARFDLELTFVITSTQEQPT 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,744,327
Number of extensions: 82772
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 21
Length of query: 483
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,185,626
Effective search space: 467136644
Effective search space used: 467136644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.6 bits)