BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3808
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/355 (55%), Positives = 233/355 (65%), Gaps = 44/355 (12%)
Query: 2 TTFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEY 61
T K I++A KA + DK NYEEAL+LY H+VQYFLH +KYE + KQSIR KC EY
Sbjct: 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY 65
Query: 62 LARAXXXXXXXX-----------XXXXQPV------KDGESRTXXXXXXXXXXXXXXXXX 104
L RA PV DGE+ +
Sbjct: 66 LDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKK---------- 115
Query: 105 XXMQANLEGAIVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLF 164
+Q L+GAIV+E+PNVKW+DVAG VILPIKFP LFTGKR PW+GILLF
Sbjct: 116 --LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLF 173
Query: 165 GPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFI 224
GPPGTGKSYLAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVK LF+LAR ++PSIIFI
Sbjct: 174 GPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFI 233
Query: 225 DERID--------------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRF 270
DE ID R I + + GVG D DGILVLGATNIPWVLD+AIRRRF
Sbjct: 234 DE-IDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF 292
Query: 271 EKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
EKRIYI LPE +AR MFR HLG+T+N++++ + +EL ++T+GYSGADIS + R+
Sbjct: 293 EKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRD 347
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/226 (66%), Positives = 175/226 (77%), Gaps = 15/226 (6%)
Query: 114 AIVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSY 173
AIV+E+PNVKW+DVAG VILPIKFP LFTGKR PW+GILLFGPPGTGKSY
Sbjct: 1 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSY 60
Query: 174 LAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID---- 229
LAKAVATEANNSTFFS+SSSDLVSKWLGESEKLVK LF+LAR ++PSIIFIDE ID
Sbjct: 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE-IDSLCG 119
Query: 230 ----------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALP 279
R I + + GVG D DGILVLGATNIPWVLD+AIRRRFEKRIYI LP
Sbjct: 120 SRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179
Query: 280 ELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
E +AR MF+ HLG T+N++++ + +EL ++T+GYSGADIS + R+
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/232 (57%), Positives = 164/232 (70%), Gaps = 14/232 (6%)
Query: 107 MQANLEGAIVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLFGP 166
++ L AI+ EKPNVKW DVAG VILP+KFP LF G R P GILL+GP
Sbjct: 33 LRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGP 92
Query: 167 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE 226
PGTGKSYLAKAVATEAN STFFSVSSSDLVSKW+GESEKLVK LF +AR ++PSIIFID+
Sbjct: 93 PGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQ 151
Query: 227 -------------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKR 273
R I L + ++GVGND G+LVLGATNIPW LD+AIRRRFE+R
Sbjct: 152 VDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERR 211
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
IYI LP+L AR MF ++G+T + ++ E+ + L TEGYSG+DI+ + ++
Sbjct: 212 IYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKD 263
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 134/232 (57%), Positives = 163/232 (70%), Gaps = 14/232 (6%)
Query: 107 MQANLEGAIVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLFGP 166
++ L AI+ EKPNVKW DVAG VILP+KFP LF G R P GILL+GP
Sbjct: 18 LRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGP 77
Query: 167 PGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE 226
PGTGKSYLAKAVATEAN STFFSVSSSDLVSKW+GESEKLVK LF +AR ++PSIIFID+
Sbjct: 78 PGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQ 136
Query: 227 -------------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKR 273
R I L + ++GVGND G+LVLGATNIPW LD+AIRRRFE+R
Sbjct: 137 VDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERR 196
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
IYI LP+L AR MF ++G+T ++ E+ + L TEGYSG+DI+ + ++
Sbjct: 197 IYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 248
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 133/225 (59%), Positives = 160/225 (71%), Gaps = 14/225 (6%)
Query: 114 AIVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSY 173
AI+ EKPNVKW DVAG VILP+KFP LF G R P GILL+GPPGTGKSY
Sbjct: 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSY 66
Query: 174 LAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE------- 226
LAKAVATEAN STFFSVSSSDLVSKW+GESEKLVK LF +AR ++PSIIFID+
Sbjct: 67 LAKAVATEAN-STFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 227 ------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPE 280
R I L + ++GVGND G+LVLGATNIPW LD+AIRRRFE+RIYI LP+
Sbjct: 126 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPD 185
Query: 281 LNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
L AR MF ++G+T ++ E+ + L TEGYSG+DI+ + ++
Sbjct: 186 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 260 bits (665), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 132/221 (59%), Positives = 157/221 (71%), Gaps = 14/221 (6%)
Query: 118 EKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKA 177
EKPNVKW DVAG VILP+KFP LF G R P GILL+GPPGTGKSYLAKA
Sbjct: 20 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKA 79
Query: 178 VATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE----------- 226
VATEAN STFFSVSSSDLVSKW+GESEKLVK LF +AR ++PSIIFIDE
Sbjct: 80 VATEAN-STFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEG 138
Query: 227 --RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNAR 284
R I L + ++GVGND G+LVLGATNIPW LD+AIRRRFE+RIYI LP+L AR
Sbjct: 139 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAAR 198
Query: 285 LFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
MF ++G+T ++ E+ + L TEGYSG+DI+ + ++
Sbjct: 199 TTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 239
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 16/226 (7%)
Query: 115 IVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYL 174
IV V+WTD+AG VILP P+LFTG R P KG+LLFGPPG GK+ L
Sbjct: 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70
Query: 175 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------- 226
A+AVATE ++TF ++S++ L SK++G+ EKLV+ LF +AR +PSIIFIDE
Sbjct: 71 ARAVATEC-SATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER 129
Query: 227 -----RIDRGISNALFLLLSGVGNDMDG--ILVLGATNIPWVLDAAIRRRFEKRIYIALP 279
R + + G+ + DG I+VL ATN P LD A RRF KR+Y++LP
Sbjct: 130 SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP 189
Query: 280 ELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
+ R + L + + E L+ LAK T+GYSG+D++ L ++
Sbjct: 190 DEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 136/225 (60%), Gaps = 17/225 (7%)
Query: 115 IVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYL 174
I+ P V W D+AG V+ P+ P +FTG R P KGILLFGPPGTGK+ +
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133
Query: 175 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID----- 229
K +A+++ +TFFS+S+S L SKW+GE EK+V+ LF +AR +P++IFIDE ID
Sbjct: 134 GKCIASQS-GATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDE-IDSLLSQ 191
Query: 230 ---------RGISNALFLLLSG-VGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALP 279
R I + L G + D ILV+GATN P +D A RRR KR+YI LP
Sbjct: 192 RGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLP 251
Query: 280 ELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324
E +AR + + + + +S+E ++++ ++++ +SGAD++ L R
Sbjct: 252 EASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 137/219 (62%), Gaps = 17/219 (7%)
Query: 122 VKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATE 181
VK+ D+AG VILP P+LFTG R P +G+LLFGPPG GK+ LAKAVA E
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171
Query: 182 ANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID------------ 229
+N +TFF++S++ L SK++GE EKLV+ LF +AR +PSIIFID+ +D
Sbjct: 172 SN-ATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQ-VDSLLCERREGEHD 229
Query: 230 --RGISNALFLLLSGVGNDMDG-ILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLF 286
R + + GV + D +LV+GATN P LD A+ RRF KR+Y++LP RL
Sbjct: 230 ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289
Query: 287 MFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
+ ++ L + ++ + L +LA+ T+GYSG+D++ L ++
Sbjct: 290 LLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKD 328
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 131/229 (57%), Gaps = 28/229 (12%)
Query: 116 VMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYL 174
V E+PNV++ D+ G V LP+K P+LF + P KGILL+GPPGTGK+ L
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 175 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------R 227
AKAVATE N+TF V S+LV K++GE LVK +F+LA+ PSIIFIDE R
Sbjct: 68 AKAVATE-TNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR 126
Query: 228 I------DRGISNALFLLLSGVGNDMDG------ILVLGATNIPWVLDAAIRR--RFEKR 273
DR + L LL+ +MDG + ++GATN P +LD AI R RF++
Sbjct: 127 TDALTGGDREVQRTLMQLLA----EMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRI 182
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
I + P+ RL + + H N D NL+E+AK TEG GA++ +
Sbjct: 183 IEVPAPDEKGRLEILKIHT-RKMNLAEDVNLEEIAKMTEGCVGAELKAI 230
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 128/229 (55%), Gaps = 25/229 (10%)
Query: 115 IVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFT--GKRVPWKGILLFGPPGTGKS 172
I EKPNV++ D+AG V +K+P+ + G ++P KG+LL GPPGTGK+
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKT 58
Query: 173 YLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE------ 226
LAKAVA EA + FFS+ S + ++G V+ LFE A+ PSIIFIDE
Sbjct: 59 LLAKAVAGEA-HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK 117
Query: 227 -RIDRGIS----------NALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKR 273
R G+ N L + G G++ ++VL ATN P +LD A+ R RF+++
Sbjct: 118 SRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQ 177
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + P+ N R+ + + H+ + +D NL+E+AK T G +GAD++ +
Sbjct: 178 VLVDKPDFNGRVEILKVHIKGVK-LANDVNLQEVAKLTAGLAGADLANI 225
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 120/217 (55%), Gaps = 19/217 (8%)
Query: 122 VKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVAT 180
V + DV G V LP++ P LF V P +GILL+GPPGTGK+ +A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 181 EANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------------R 227
E + FF ++ +++SK GESE ++ FE A + P+IIFIDE
Sbjct: 261 E-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 228 IDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARL 285
++R I + L L+ G+ ++V+ ATN P +D A+RR RF++ + I +P+ RL
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 286 FMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + H N + D +L+++A T G+ GAD++ L
Sbjct: 379 EILQIHTKNMK-LADDVDLEQVANETHGHVGADLAAL 414
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 120/217 (55%), Gaps = 19/217 (8%)
Query: 122 VKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVAT 180
V + DV G V LP++ P LF V P +GILL+GPPGTGK+ +A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 181 EANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------------R 227
E + FF ++ +++SK GESE ++ FE A + P+IIFIDE
Sbjct: 261 E-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 228 IDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARL 285
++R I + L L+ G+ ++V+ ATN P +D A+RR RF++ + I +P+ RL
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 286 FMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + H N + D +L+++A T G+ GAD++ L
Sbjct: 379 EILQIHTKNMK-LADDVDLEQVANETHGHVGADLAAL 414
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 116 VMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYL 174
V+E P V W D+ G V P++ P F P KG+L +GPPG GK+ L
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 175 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------- 226
AKA+A E + F S+ +L++ W GESE V+ +F+ AR P ++F DE
Sbjct: 528 AKAIANECQ-ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586
Query: 227 -RIDRGISNALFLLLSGVGNDMDG------ILVLGATNIPWVLDAAIRR--RFEKRIYIA 277
A +++ + +MDG + ++GATN P ++D AI R R ++ IYI
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 278 LPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
LP+ +R+ + + +L + D +L+ LAK T G+SGAD++ +
Sbjct: 647 LPDEKSRVAILKANLRKS-PVAKDVDLEFLAKMTNGFSGADLTEI 690
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 19/217 (8%)
Query: 122 VKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVAT 180
V + D+ G V LP++ P LF V P +GILL+GPPGTGK+ +A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 181 EANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------------R 227
E + FF ++ +++SK GESE ++ FE A + P+IIFIDE
Sbjct: 261 E-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 228 IDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARL 285
++R I + L L+ G+ ++V+ ATN P +D A+RR RF++ + I +P+ RL
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 286 FMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + H N + D +L+++A T G+ GAD++ L
Sbjct: 379 EILQIHTKNMK-LADDVDLEQVANETHGHVGADLAAL 414
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 19/217 (8%)
Query: 122 VKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVAT 180
V + D+ G V LP++ P LF V P +GILL+GPPGTGK+ +A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 181 EANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------------R 227
E + FF ++ +++SK GESE ++ FE A + P+IIFIDE
Sbjct: 261 E-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 228 IDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARL 285
++R I + L L+ G+ ++V+ ATN P +D A+RR RF++ + I +P+ RL
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 286 FMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + H N + D +L+++A T G+ GAD++ L
Sbjct: 379 EILQIHTKNMK-LADDVDLEQVANETHGHVGADLAAL 414
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 19/217 (8%)
Query: 122 VKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVAT 180
V + D+ G V LP++ P LF V P +GILL+GPPGTGK+ +A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 181 EANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------------R 227
E + FF ++ +++SK GESE ++ FE A + P+IIFIDE
Sbjct: 261 E-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 228 IDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARL 285
++R I + L L+ G+ ++V+ ATN P +D A+RR RF++ + I +P+ RL
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 286 FMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + H N + D +L+++A T G+ GAD++ L
Sbjct: 379 EILQIHTKNMK-LADDVDLEQVANETHGHVGADLAAL 414
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 116 VMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYL 174
V+E P V W D+ G V P++ P F P KG+L +GPPG GK+ L
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 175 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------- 226
AKA+A E + F S+ +L++ W GESE V+ +F+ AR P ++F DE
Sbjct: 528 AKAIANECQ-ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586
Query: 227 -RIDRGISNALFLLLSGVGNDMDG------ILVLGATNIPWVLDAAIRR--RFEKRIYIA 277
A +++ + +MDG + ++GATN P ++D AI R R ++ IYI
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 278 LPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
LP+ +R+ + + +L + D +L+ LAK T G+SGAD++ +
Sbjct: 647 LPDEKSRVAILKANLRKS-PVAKDVDLEFLAKMTNGFSGADLTEI 690
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 19/217 (8%)
Query: 122 VKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVAT 180
V + D+ G V LP++ P LF V P +GILL+GPPGTGK+ +A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 181 EANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------------R 227
E + FF ++ +++SK GESE ++ FE A + P+IIFIDE
Sbjct: 261 E-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 228 IDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARL 285
++R I + L L+ G+ ++V+ ATN P +D A+RR RF++ + I +P+ RL
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 286 FMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + H N + D +L+++A T G+ GAD++ L
Sbjct: 379 EILQIHTKNMK-LADDVDLEQVANETHGHVGADLAAL 414
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 116 VMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYL 174
V+E P V W D+ G V P++ P F P KG+L +GPPG GK+ L
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 175 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------- 226
AKA+A E + F S+ +L++ W GESE V+ +F+ AR P ++F DE
Sbjct: 66 AKAIANECQ-ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 124
Query: 227 -RIDRGISNALFLLLSGVGNDMDG------ILVLGATNIPWVLDAAIRR--RFEKRIYIA 277
A +++ + +MDG + ++GATN P ++D AI R R ++ IYI
Sbjct: 125 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184
Query: 278 LPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
LP+ +R+ + + +L + D +L+ LAK T G+SGAD++ +
Sbjct: 185 LPDEKSRVAILKANLRKS-PVAKDVDLEFLAKMTNGFSGADLTEI 228
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 114/200 (57%), Gaps = 30/200 (15%)
Query: 144 PIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES 203
P KF ++ G R+P KGILL GPPGTGK+ LA+AVA EA N FF +S SD V ++G
Sbjct: 38 PSKFNRI--GARMP-KGILLVGPPGTGKTLLARAVAGEA-NVPFFHISGSDFVELFVGVG 93
Query: 204 EKLVKTLFELARAHRPSIIFIDERID-----RGIS------------NALFLLLSGVGND 246
V+ LF A+AH P I+FIDE ID RG N L + + G +
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDE-IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-DS 151
Query: 247 MDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNT--ISDE 302
+GI+V+ ATN P +LD A+ R RF+K+I + P++ R + H TRN D
Sbjct: 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH---TRNKPLAEDV 208
Query: 303 NLKELAKRTEGYSGADISTL 322
NL+ +AKRT G+ GAD+ L
Sbjct: 209 NLEIIAKRTPGFVGADLENL 228
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 118/227 (51%), Gaps = 27/227 (11%)
Query: 113 GAIVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLF--TGKRVPWKGILLFGPPGTG 170
G+++ E P V + DVAG V +K P F G R+P KG+LL GPPG G
Sbjct: 4 GSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVG 61
Query: 171 KSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID- 229
K++LA+AVA EA F + S SD V ++G V+ LFE A+ H P I+FIDE ID
Sbjct: 62 KTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE-IDA 119
Query: 230 ----RGIS------------NALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFE 271
RG N L + + G D I+V+ ATN P +LD A+ R RF+
Sbjct: 120 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPDILDPALLRPGRFD 178
Query: 272 KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318
++I I P++ R + R H + D +L LAKRT G+ GAD
Sbjct: 179 RQIAIDAPDVKGREQILRIH-ARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 113/200 (56%), Gaps = 30/200 (15%)
Query: 144 PIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES 203
P KF ++ G R+P KGILL GPPGTG + LA+AVA EAN FF +S SD V ++G
Sbjct: 38 PSKFNRI--GARMP-KGILLVGPPGTGATLLARAVAGEAN-VPFFHISGSDFVELFVGVG 93
Query: 204 EKLVKTLFELARAHRPSIIFIDERID-----RGIS------------NALFLLLSGVGND 246
V+ LF A+AH P I+FIDE ID RG N L + + G +
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDE-IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-DS 151
Query: 247 MDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNT--ISDE 302
+GI+V+ ATN P +LD A+ R RF+K+I + P++ R + H TRN D
Sbjct: 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH---TRNKPLAEDV 208
Query: 303 NLKELAKRTEGYSGADISTL 322
NL+ +AKRT G+ GAD+ L
Sbjct: 209 NLEIIAKRTPGFVGADLENL 228
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 32/226 (14%)
Query: 118 EKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV---PWKGILLFGPPGTGKSYL 174
E+ + + + G + LP+K P++F +RV P KG+LL+GPPGTGK+ L
Sbjct: 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIF--QRVGIKPPKGVLLYGPPGTGKTLL 231
Query: 175 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------- 226
AKAVA + FS +S +V K++GES ++++ +F A+ H P IIF+DE
Sbjct: 232 AKAVAATIGANFIFSPASG-IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRR 290
Query: 227 -----RIDRGISNALFLLLSGVGNDMDGILVLG------ATNIPWVLDAAIRR--RFEKR 273
DR I L LL+ MDG LG ATN P LD A+ R R +++
Sbjct: 291 FSEGTSADREIQRTLMELLT----QMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRK 346
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319
+ I LP RL +F+ H + T + + + K ++G++GADI
Sbjct: 347 VEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADI 391
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 24/227 (10%)
Query: 116 VMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLF--TGKRVPWKGILLFGPPGTGKSY 173
V EKP ++DV G ++LP+K F G R P KG L++GPPGTGK+
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTL 230
Query: 174 LAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE------- 226
LA+A A + N +TF +++ LV ++GE KLV+ F LA+ P+IIFIDE
Sbjct: 231 LARACAAQTN-ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK 289
Query: 227 ------RIDRGISNALFLLLS---GVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIY 275
DR + + LL+ G +D D + VL ATN VLD A+ R R +++I
Sbjct: 290 RFDSEKSGDREVQRTMLELLNQLDGFSSD-DRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
Query: 276 IALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
LP ++R + + H T D N +ELA+ T+ ++GA + +
Sbjct: 349 FPLPSEDSRAQILQIH-SRKMTTDDDINWQELARSTDEFNGAQLKAV 394
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 116/225 (51%), Gaps = 27/225 (12%)
Query: 115 IVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLF--TGKRVPWKGILLFGPPGTGKS 172
++ E P V + DVAG V +K P F G R+P KG+LL GPPG GK+
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 78
Query: 173 YLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--- 229
+LA+AVA EA F + S SD V ++G V+ LFE A+ H P I+FIDE ID
Sbjct: 79 HLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE-IDAVG 136
Query: 230 --RGIS------------NALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKR 273
RG N L + + G D I+V+ ATN P +LD A+ R RF+++
Sbjct: 137 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPDILDPALLRPGRFDRQ 195
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318
I I P++ R + R H + D +L LAKRT G+ GAD
Sbjct: 196 IAIDAPDVKGREQILRIH-ARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 116/225 (51%), Gaps = 27/225 (12%)
Query: 115 IVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLF--TGKRVPWKGILLFGPPGTGKS 172
++ E P V + DVAG V +K P F G R+P KG+LL GPPG GK+
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 173 YLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--- 229
+LA+AVA EA F + S SD V ++G V+ LFE A+ H P I+FIDE ID
Sbjct: 88 HLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE-IDAVG 145
Query: 230 --RGIS------------NALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKR 273
RG N L + + G D I+V+ ATN P +LD A+ R RF+++
Sbjct: 146 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318
I I P++ R + R H + D +L LAKRT G+ GAD
Sbjct: 205 IAIDAPDVKGREQILRIH-ARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 116/225 (51%), Gaps = 27/225 (12%)
Query: 115 IVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLF--TGKRVPWKGILLFGPPGTGKS 172
++ E P V + DVAG V +K P F G R+P KG+LL GPPG GK+
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 173 YLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--- 229
+LA+AVA EA F + S SD V ++G V+ LFE A+ H P I+FIDE ID
Sbjct: 88 HLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE-IDAVG 145
Query: 230 --RGIS------------NALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKR 273
RG N L + + G D I+V+ ATN P +LD A+ R RF+++
Sbjct: 146 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318
I I P++ R + R H + D +L LAKRT G+ GAD
Sbjct: 205 IAIDAPDVKGREQILRIH-ARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 108/194 (55%), Gaps = 19/194 (9%)
Query: 116 VMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYL 174
V EKP+V ++DV G V LP+ P+ F + P KGILL+GPPGTGK+
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259
Query: 175 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------R 227
A+AVA ++TF V S+LV K++GE ++V+ LFE+AR + IIF DE R
Sbjct: 260 ARAVANR-TDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGAR 318
Query: 228 IDRG------ISNALFLLLSGV-GNDMDG-ILVLGATNIPWVLDAAIRR--RFEKRIYIA 277
D G + + L++ + G D G I V+ ATN P LD A+ R R ++++ +
Sbjct: 319 FDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS 378
Query: 278 LPELNARLFMFRHH 291
LP+L R +FR H
Sbjct: 379 LPDLEGRANIFRIH 392
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 28/227 (12%)
Query: 115 IVMEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRVPW-KGILLFGPPGTGKSY 173
+V + P+ + V G + LP+K P+LF + KG++L+GPPGTGK+
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 174 LAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE------- 226
LA+AVA + F VS ++LV K++GE ++V+ LF +AR H PSIIF+DE
Sbjct: 198 LARAVA-HHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGST 256
Query: 227 RI------DRGISNALFLLLSGVGNDMDG------ILVLGATNIPWVLDAAIRR--RFEK 272
R+ D + + LL N +DG I ++ ATN +LD A+ R R ++
Sbjct: 257 RVEGSGGGDSEVQRTMLELL----NQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDR 312
Query: 273 RIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319
+I P + AR + R H N NL+++A++ G SGAD+
Sbjct: 313 KIEFPPPSVAARAEILRIH-SRKMNLTRGINLRKVAEKMNGCSGADV 358
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 22/232 (9%)
Query: 117 MEKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYLA 175
M PNV W D+ ++ P++ P F V G+LL GPPG GK+ LA
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61
Query: 176 KAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------RI 228
KAVA E+ F SV +L++ ++GESE+ V+ +F+ A+ P +IF DE R
Sbjct: 62 KAVANES-GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRS 120
Query: 229 DRGISNALFLLLSGVGNDMDG------ILVLGATNIPWVLDAAIRR--RFEKRIYIALPE 280
DR + A +++ + +MDG + ++ ATN P ++D AI R R +K +++ LP
Sbjct: 121 DRE-TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179
Query: 281 LNARLFMFRHHLGN-TRNTI-SDENLKELAK--RTEGYSGADISTLERNFKV 328
RL + + N T+ + +D NL+ +A R + Y+GAD+S L R +
Sbjct: 180 PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 113/199 (56%), Gaps = 28/199 (14%)
Query: 144 PIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES 203
P +F +L G ++P KG+L+ GPPGTGK+ LAKA+A EA FF++S SD V ++G
Sbjct: 34 PSRFQKL--GGKIP-KGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFVEMFVGVG 89
Query: 204 EKLVKTLFELARAHRPSIIFIDERID-----RGIS------------NALFLLLSGV-GN 245
V+ +FE A+ P IIFIDE ID RG N + + + G GN
Sbjct: 90 ASRVRDMFEQAKKAAPCIIFIDE-IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148
Query: 246 DMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDEN 303
+GI+V+ ATN P VLD A+ R RF++++ + LP++ R + + H+ D +
Sbjct: 149 --EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDID 205
Query: 304 LKELAKRTEGYSGADISTL 322
+A+ T G+SGAD++ L
Sbjct: 206 AAIIARGTPGFSGADLANL 224
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 117/226 (51%), Gaps = 30/226 (13%)
Query: 121 NVKWTDVAGXXXXXXXXXXXVIL---PIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKA 177
V + DVAG V P +F QL G +VP KG LL GPPG GK+ LAKA
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQL--GAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 178 VATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-------- 229
VATEA F +++ ++ V G V++LF+ ARA P I++IDE ID
Sbjct: 59 VATEA-QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDE-IDAVGKKRST 116
Query: 230 --RGISNA--------LFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIA 277
G SN L + + G+G D ++VL +TN +LD A+ R R ++ ++I
Sbjct: 117 TMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADILDGALMRPGRLDRHVFID 175
Query: 278 LPELNARLFMFRHHLGNTRNTISDENLKE-LAKRTEGYSGADISTL 322
LP L R +F HL + + T S + LA+ T G+SGADI+ +
Sbjct: 176 LPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 20/221 (9%)
Query: 120 PNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAV 178
P ++D+ G V LP+ P+L+ + P KG++L+G PGTGK+ LAKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 179 ATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------RID-- 229
A + + +TF + S+L+ K+LG+ +L + +F++A + PSI+FIDE R D
Sbjct: 237 ANQTS-ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN 295
Query: 230 ----RGISNALFLLLSGVG--NDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPEL 281
R I + LL+ + +D + V+ ATN LD A+ R R +++I P+L
Sbjct: 296 SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355
Query: 282 NARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + + H N D NL+ L + SGADI +
Sbjct: 356 STKKKILGIHTSKM-NLSEDVNLETLVTTKDDLSGADIQAM 395
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 29/228 (12%)
Query: 118 EKPNVKWTDVAGXXXXXXXXXXXVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAK 176
EKP+V + DV G V LP+ L+ + P +G+LL+GPPGTGK+ L K
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 177 AVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDER--------- 227
AVA + + F V+ S+ V K+LGE ++V+ +F LAR + PSIIFIDE
Sbjct: 225 AVAN-STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFD 283
Query: 228 ----IDRGISNALFLLLSGVGNDMDG------ILVLGATNIPWVLDAAIRR--RFEKRI- 274
DR + L LL+ MDG + V+ ATN LD A+ R R +++I
Sbjct: 284 AQTGSDREVQRILIELLT----QMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIE 339
Query: 275 YIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ +L + R +F + + + + +L L R + SGA I+ +
Sbjct: 340 FPSLRDRRERRLIF-GTIASKMSLAPEADLDSLIIRNDSLSGAVIAAI 386
>pdb|1YXR|A Chain A, Nmr Structure Of Vps4a Mit Domain
Length = 77
Score = 82.8 bits (203), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 2 TTFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEY 61
+T K I++ KATE DK KNYEEAL+LY H+V+YFLHA+KYE S + K+SIR KC +Y
Sbjct: 4 STLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQY 63
Query: 62 LARA 65
L RA
Sbjct: 64 LDRA 67
>pdb|2JQ9|A Chain A, Vps4a Mit-Chmp1a Complex
pdb|2K3W|A Chain A, Nmr Structure Of Vps4a-Mit-Chmp6
Length = 84
Score = 82.8 bits (203), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 2 TTFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEY 61
+T K I++ KATE DK KNYEEAL+LY H+V+YFLHA+KYE S + K+SIR KC +Y
Sbjct: 4 STLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQY 63
Query: 62 LARA 65
L RA
Sbjct: 64 LDRA 67
>pdb|2CPT|A Chain A, Solution Structure Of Mit Domain From Human Skd1
Length = 117
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYL 62
K I++A KA + DK NYEEAL+LY H+VQYFLH +KYE + KQSIR KC EYL
Sbjct: 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 73
Query: 63 ARAXXXX---XXXXXXXXQPVKDGE 84
RA +PVK+G+
Sbjct: 74 DRAEKLKEYLKNKEKKAQKPVKEGQ 98
>pdb|1WR0|A Chain A, Structural Characterization Of The Mit Domain From Human
Vps4b
Length = 81
Score = 79.0 bits (193), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 4 FDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLA 63
K I++A KA + DK NYEEAL+LY H+VQYFLH +KYE + KQSIR KC EYL
Sbjct: 12 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLD 71
Query: 64 RA 65
RA
Sbjct: 72 RA 73
>pdb|2JQH|A Chain A, Vps4b Mit
pdb|2JQK|A Chain A, Vps4b Mit-Chmp2b Complex
Length = 89
Score = 78.2 bits (191), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 4 FDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLA 63
K I++A KA + DK NYEEAL+LY H+VQYFLH +KYE + KQSIR KC EYL
Sbjct: 11 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLD 70
Query: 64 RA 65
RA
Sbjct: 71 RA 72
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 279 PELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
P+L AR MF ++G+T ++ E+ + L TEGYSG+DI+ + ++
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 49
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 41/169 (24%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
++L+GPPGTGK+ LA+ +A AN V V+ + E + ++ + A R +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANA----DVERISAVTSGVKEIREAIERARQNRNAGRRT 108
Query: 221 IIFIDE--RIDRGISNALFLLLSGVGNDMDG-ILVLGAT--NIPWVLDAAIRRRFEKRIY 275
I+F+DE R ++ +A + DG I +GAT N + L++A+ R
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIE------DGTITFIGATTENPSFELNSALLSR------ 156
Query: 276 IALPELNARLFMFRHHLGNTRNTISDENLKE-----LAKRTEGYSGADI 319
AR+++ + ++S E++++ + +T GY G DI
Sbjct: 157 -------ARVYLLK--------SLSTEDIEQVLTQAMEDKTRGYGGQDI 190
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 31/172 (18%)
Query: 162 LLFGPPGTGKSYLAKAVATEANNSTFFS------VSSSDLVSKWLGESEKLVKTLFELAR 215
+L G PG GK+ +A+ +A + N+ V + D+ +K+ GE E +K + + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 216 AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVL-----DAAIRRRF 270
I+FID ID SN L L+ + +GAT + DAA+ RRF
Sbjct: 265 QAGNIILFIDAAID--ASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDAALERRF 317
Query: 271 EKRIYIALPELNARLFMFR--------HHLGNTRNTISDENLKELAKRTEGY 314
+ I + P ++ + + + HH R +I+D+ ++ K ++ Y
Sbjct: 318 QP-IQVDQPSVDESIQILQGLRDRYEAHH----RVSITDDAIEAAVKLSDRY 364
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 149 QLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVSKWLGESEKLV 207
+L K++ + +LL GPPGTGK+ LA A+A E + F + S++ S + ++E L+
Sbjct: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM 113
Query: 208 K 208
+
Sbjct: 114 E 114
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 31/172 (18%)
Query: 162 LLFGPPGTGKSYLAKAVATEANNSTFFS------VSSSDLVSKWLGESEKLVKTLFELAR 215
+L G PG GK+ +A+ +A + N+ V + D+ +K+ GE E +K + + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 216 AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVL-----DAAIRRRF 270
I+FID ID SN L L+ + +GAT + DAA+ RRF
Sbjct: 265 QAGNIILFIDAAID--ASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDAALERRF 317
Query: 271 EKRIYIALPELNARLFMFR--------HHLGNTRNTISDENLKELAKRTEGY 314
+ I + P ++ + + + HH R +I+D+ ++ K ++ Y
Sbjct: 318 QP-IQVDQPSVDESIQILQGLRDRYEAHH----RVSITDDAIEAAVKLSDRY 364
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 29/179 (16%)
Query: 154 KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFEL 213
++ P + +LLFGPPG GK+ LA +A E + V+S + K + L +L E
Sbjct: 34 RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEKPGDLAAILANSLEE- 90
Query: 214 ARAHRPSIIFIDE--RIDRGISNALFLLLS--------GVGN-------DMDGILVLGAT 256
I+FIDE R+ R L+ + G G ++ ++GAT
Sbjct: 91 -----GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145
Query: 257 NIPWVLDAAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEG 313
P ++ A + RF + + PE A+ M L R I++E E+ +R+ G
Sbjct: 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRG 202
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 29/179 (16%)
Query: 154 KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFEL 213
++ P + +LLFGPPG GK+ LA +A E + V+S + K + L +L E
Sbjct: 34 RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEKPGDLAAILANSLEE- 90
Query: 214 ARAHRPSIIFIDE--RIDRGISNALFLLLS--------GVGN-------DMDGILVLGAT 256
I+FIDE R+ R L+ + G G ++ ++GAT
Sbjct: 91 -----GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145
Query: 257 NIPWVLDAAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEG 313
P ++ A + RF + + PE A+ M L R I++E E+ +R+ G
Sbjct: 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRG 202
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 155 RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESE----KLVKTL 210
R P +LL GPP +GK+ LA +A E+ N F + S D K +G SE + +K +
Sbjct: 60 RTPLVSVLLEGPPHSGKTALAAKIAEES-NFPFIKICSPD---KMIGFSETAKCQAMKKI 115
Query: 211 FELARAHRPSIIFIDE 226
F+ A + S + +D+
Sbjct: 116 FDDAYKSQLSCVVVDD 131
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 155 RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESE----KLVKTL 210
R P +LL GPP +GK+ LA +A E+ N F + S D K +G SE + +K +
Sbjct: 61 RTPLVSVLLEGPPHSGKTALAAKIAEES-NFPFIKICSPD---KMIGFSETAKCQAMKKI 116
Query: 211 FELARAHRPSIIFIDE 226
F+ A + S + +D+
Sbjct: 117 FDDAYKSQLSCVVVDD 132
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 29/179 (16%)
Query: 154 KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFEL 213
++ P + +LLFGPPG GK+ LA +A E + V+S + K + L +L E
Sbjct: 34 RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEKPGDLAAILANSLEE- 90
Query: 214 ARAHRPSIIFIDE--RIDRGISNALFLLLS--------GVGN-------DMDGILVLGAT 256
I+FIDE R+ R L+ + G G ++ ++GAT
Sbjct: 91 -----GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145
Query: 257 NIPWVLDAAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEG 313
P ++ A + RF + + PE A+ M L R I++E E+ +R+ G
Sbjct: 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRG 202
>pdb|2V6X|A Chain A, Stractural Insight Into The Interaction Between
Escrt-Iii And Vps4
Length = 85
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 6 KGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARA 65
KGI + KA + D YEEA Y + + Y ALKYE + + K IR K EYL RA
Sbjct: 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLXLALKYE-KNPKSKDLIRAKFTEYLNRA 70
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 26/127 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+LL GPPG GK+ LA +A+E T V+S ++ K G+ ++ +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQ--TNIHVTSGPVLVKQ-GDMAAILTSL------ERGD 104
Query: 221 IIFIDE--RIDRGISNALFL--------LLSGVGN-------DMDGILVLGATNIPWVLD 263
++FIDE R+++ + L+ ++ G G D+ ++GAT +L
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS 164
Query: 264 AAIRRRF 270
+ +R RF
Sbjct: 165 SPLRSRF 171
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 26/127 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+LL GPPG GK+ LA +A+E T V+S ++ K G+ ++ +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQ--TNIHVTSGPVLVKQ-GDMAAILTSL------ERGD 104
Query: 221 IIFIDE--RIDRGISNALFL--------LLSGVGN-------DMDGILVLGATNIPWVLD 263
++FIDE R+++ + L+ ++ G G D+ ++GAT +L
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS 164
Query: 264 AAIRRRF 270
+ +R RF
Sbjct: 165 SPLRSRF 171
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 149 QLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVSKWLGESEKL 206
+L K+ + +LL GPPGTGK+ LA A+A E + F S++ S + ++E L
Sbjct: 68 ELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVL 126
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 26/127 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+LL GPPG G++ LA +A+E T V+S ++ K G+ ++ +L R
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQ--TNIHVTSGPVLVKQ-GDMAAILTSL------ERGD 104
Query: 221 IIFIDE--RIDRGISNALFL--------LLSGVGN-------DMDGILVLGATNIPWVLD 263
++FIDE R+++ + L+ ++ G G D+ ++GAT +L
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS 164
Query: 264 AAIRRRF 270
+ +R RF
Sbjct: 165 SPLRSRF 171
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 26/127 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+LL GPPG GK+ LA +A+E T V+S ++ K G+ ++ +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQ--TNIHVTSGPVLVKQ-GDMAAILTSL------ERGD 104
Query: 221 IIFIDE--RIDRGISNALFL--------LLSGVGN-------DMDGILVLGATNIPWVLD 263
++FIDE R+++ + L+ ++ G G D+ ++GAT +L
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATVRSGLLS 164
Query: 264 AAIRRRF 270
+ +R RF
Sbjct: 165 SPLRSRF 171
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 26/127 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+LL GPPG GK+ LA +A+E T V+S ++ K G+ ++ +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQ--TNIHVTSGPVLVKQ-GDMAAILTSL------ERGD 104
Query: 221 IIFIDE--RIDRGISNALFL--------LLSGVGN-------DMDGILVLGATNIPWVLD 263
++FIDE R+++ + L+ ++ G G D+ ++G+T +L
Sbjct: 105 VLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTTRSGLLS 164
Query: 264 AAIRRRF 270
+ +R RF
Sbjct: 165 SPLRSRF 171
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+LL GPPG GK+ LA +A+E T V+S ++ K G+ ++ +L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQ--TNIHVTSGPVLVKQ-GDMAAILTSL------ERGD 104
Query: 221 IIFIDE--RIDRGISNALF 237
++FIDE R+++ + L+
Sbjct: 105 VLFIDEIHRLNKAVEELLY 123
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 31/154 (20%)
Query: 162 LLFGPPGTGKSYLAKAVATEANNST---------FFSVSSSDLV--SKWLGE-SEKLVKT 209
+L G PG GK+ + + +A N ++ LV +K+ GE E+L
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 210 LFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGIL------VLGATNIPW 260
L +LA+ I+FIDE + G ++ GN + L +GAT +
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAM----DAGNMLKPALARGELHCVGATTLDE 162
Query: 261 VL-----DAAIRRRFEKRIYIALPELNARLFMFR 289
DAA+ RRF+K +++A P + + + R
Sbjct: 163 YRQYIEKDAALERRFQK-VFVAEPSVEDTIAILR 195
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES-EKLVKTLFELA----R 215
ILL GP G+GK+ +A+ +A + S ++S + ++GE E ++ L + + +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 216 AHRPSIIFIDERIDR 230
+ I+FIDE ID+
Sbjct: 135 KAQKGIVFIDE-IDK 148
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS-KWLG-ESEKLVKTLFEL 213
V K IL+ GP G GK+ +A+ +A A N+ F V ++ ++G E + +++ L +
Sbjct: 48 VTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDS 106
Query: 214 A-----RAHRPSIIFIDERIDR 230
A + I+FIDE ID+
Sbjct: 107 AGGAIDAVEQNGIVFIDE-IDK 127
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 155 RVPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVSKWLGESEKLVK 208
++ + +L+ G PGTGK+ +A +A T F +++ S++ S + ++E L +
Sbjct: 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQ 121
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 23/104 (22%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES-EKLVKTL-----FELA 214
ILL GP G+GK+ LA+ +A + + +++ + ++GE E +++ L +++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 215 RAHRPSIIFIDE--RIDR--------------GISNALFLLLSG 242
+A R I++ID+ +I R G+ AL L+ G
Sbjct: 114 KAQR-GIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 23/104 (22%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES-EKLVKTL-----FELA 214
ILL GP G+GK+ LA+ +A + + +++ + ++GE E +++ L +++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 215 RAHRPSIIFIDE--RIDR--------------GISNALFLLLSG 242
+A R I++ID+ +I R G+ AL L+ G
Sbjct: 114 KAQR-GIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 32/158 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
I++ GP GTGKS L K + E +S FSVSS+ + GE +
Sbjct: 5 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPR-AGE-----------VNGKDYN 52
Query: 221 IIFIDERIDRGISNALFL---LLSG--VGNDMDGILVLGATNIPWVLDAAIRRRFEKRIY 275
+ +DE I N F+ SG G+ + + + + +LD ++ +
Sbjct: 53 FVSVDE-FKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGV---KSV 108
Query: 276 IALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEG 313
A+PELNAR F+F I+ ++++L KR EG
Sbjct: 109 KAIPELNAR-FLF----------IAPPSVEDLKKRLEG 135
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 32/158 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
I++ GP GTGKS L K + E +S FSVSS+ + GE +
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPR-AGE-----------VNGKDYN 51
Query: 221 IIFIDERIDRGISNALFL---LLSG--VGNDMDGILVLGATNIPWVLDAAIRRRFEKRIY 275
+ +DE I N F+ SG G+ + + + + +LD ++ +
Sbjct: 52 FVSVDE-FKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGV---KSV 107
Query: 276 IALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEG 313
A+PELNAR F+F I+ ++++L KR EG
Sbjct: 108 KAIPELNAR-FLF----------IAPPSVEDLKKRLEG 134
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 142 ILPIKFPQLFTGKRVP---WKGILLFGPPGTGKSYLAKAVATE 181
I I+F + F + P KG+ L G G GK+YL A+A E
Sbjct: 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE 77
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 162 LLFGPPGTGKSYLAKAVA---------TEANNSTFFSVSSSDLV--SKWLGESEKLVKTL 210
LL G G GK+ +A+ +A + T +S+ L+ +K+ G+ EK K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 211 FELARAHRPSIIFIDE 226
+ SI+FIDE
Sbjct: 271 LKQLEQDTNSILFIDE 286
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 155 RVPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVSKWLGESEKLVK 208
++ + +L+ G PGTGK+ +A A T F +++ S++ S ++E L +
Sbjct: 82 KIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQ 136
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 43/131 (32%)
Query: 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHR 218
KG+ L+G G GKSYL A+A E L E + + TL H
Sbjct: 153 KGLYLYGDMGIGKSYLLAAMAHE------------------LSEKKGVSTTLL-----HF 189
Query: 219 PSIIF----------IDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR 268
PS + E ID + N L+L +G + AT+ WV D ++
Sbjct: 190 PSFAIDVKNAISNGSVKEEID-AVKNVPVLILDDIGAEQ-------ATS--WVRDEVLQV 239
Query: 269 RFEKRIYIALP 279
+ R+ LP
Sbjct: 240 ILQYRMLEELP 250
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193
V K IL+ GP G GK+ +A+ +A A N+ F V ++
Sbjct: 47 VTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEAT 83
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193
V K IL+ GP G GK+ +A+ +A A N+ F V ++
Sbjct: 54 VTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEAT 90
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193
V K IL+ GP G GK+ +A+ +A A N+ F V ++
Sbjct: 48 VTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEAT 84
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 147 FPQLFTGKRVPWKGILLFGP-PGTGKSYLAKAVATEANNSTFFSVSSSDL 195
F + + ++P I+L P PGTGK+ +AKA+ + N F V+ SD
Sbjct: 38 FKSITSKGKIPH--IILHSPSPGTGKTTVAKALCHDVNADMMF-VNGSDC 84
>pdb|3JQO|A Chain A, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|D Chain D, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|G Chain G, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|J Chain J, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|M Chain M, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|P Chain P, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|S Chain S, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|V Chain V, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|Y Chain Y, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|BB Chain b, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|EE Chain e, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|HH Chain h, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|KK Chain k, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|NN Chain n, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
Length = 227
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 223 FIDERIDRGISNA---LFLLLSGVGNDMDGILV---------LGATNIPWVLDAAIRRRF 270
++D +I GI + +F+L + ND DG +V LG+ IP +DA R
Sbjct: 89 WVDGQITGGIKDGQARVFVLWERIRNDQDGTIVNIDSAGTNSLGSAGIPGQVDAHXWERL 148
Query: 271 EKRIYIAL 278
I I+L
Sbjct: 149 RGAIXISL 156
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193
V K IL+ GP G GK+ +A+ +A A N+ F V ++
Sbjct: 48 VTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEAT 84
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
+LL G PGTGKS L +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELAR 215
VP +L+ GP G+GKS A+ NN+ + + + + +++ ES+K + E+
Sbjct: 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREV-- 178
Query: 216 AHRPSIIF 223
HR ++ F
Sbjct: 179 -HRDTLGF 185
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
I++ GP GTGKS L K + E +S FSV S+ + GE +
Sbjct: 20 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPR-AGE-----------VNGKDYN 67
Query: 221 IIFIDERIDRGISNALFL---LLSG--VGNDMDGILVLGATNIPWVLDAAIRRRFEKRIY 275
+ +DE I N F+ SG G+ + + + + +LD ++ +
Sbjct: 68 FVSVDE-FKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGV---KSV 123
Query: 276 IALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEG 313
A+PELNAR F+F I+ ++++L KR EG
Sbjct: 124 KAIPELNAR-FLF----------IAPPSVEDLKKRLEG 150
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 161 ILLF-GPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVK 208
IL+F GPPG GK AK +A E F +S+ D++ + + + L K
Sbjct: 2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQKGTPLGK 47
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193
+++ GP G GK L K + E N +FSVS +
Sbjct: 26 LVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCT 58
>pdb|3L2Q|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Apo Form
pdb|3L2Q|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Apo Form
pdb|3L2R|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium
pdb|3L2R|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium
pdb|3L2U|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Gs9137
(Elvitegravir)
pdb|3L2U|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Gs9137
(Elvitegravir)
pdb|3L2V|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese And Mk0518
(Raltegravir)
pdb|3L2V|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese And Mk0518
(Raltegravir)
pdb|3L2W|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese And Gs9137
(Elvitegravir)
pdb|3L2W|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese And Gs9137
(Elvitegravir)
pdb|3OY9|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese At 2.55 Resolution
pdb|3OY9|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Manganese At 2.55 Resolution
pdb|3OYA|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Raltegravir At
2.65 Resolution
pdb|3OYA|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Raltegravir At
2.65 Resolution
pdb|3OS0|A Chain A, Pfv Strand Transfer Complex (Stc) At 2.81 A Resolution
pdb|3OS0|B Chain B, Pfv Strand Transfer Complex (Stc) At 2.81 A Resolution
pdb|3OS1|A Chain A, Pfv Target Capture Complex (Tcc) At 2.97 A Resolution
pdb|3OS1|B Chain B, Pfv Target Capture Complex (Tcc) At 2.97 A Resolution
pdb|3OS2|A Chain A, Pfv Target Capture Complex (Tcc) At 3.32 A Resolution
pdb|3OS2|B Chain B, Pfv Target Capture Complex (Tcc) At 3.32 A Resolution
pdb|3OYB|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Mk2048
pdb|3OYB|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Mk2048
pdb|3OYC|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Pica
pdb|3OYC|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Pica
pdb|3OYD|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Gs9160
pdb|3OYD|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Gs9160
pdb|3OYE|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
Compound2
pdb|3OYE|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
Compound2
pdb|3OYF|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
L-870,810
pdb|3OYF|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
L-870,810
pdb|3OYG|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
Compound1 (Compoundg)
pdb|3OYG|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti
Compound1 (Compoundg)
pdb|3OYH|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Mk0536
pdb|3OYH|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And The Insti Mk0536
pdb|3S3M|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Dolutegravir
(SGSK1349572)
pdb|3S3M|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv)
Intasome In Complex With Magnesium And Dolutegravir
(SGSK1349572)
pdb|4E7H|A Chain A, Pfv Intasome Prior To 3'-Processing, Apo Form (Ui-Apo)
pdb|4E7H|B Chain B, Pfv Intasome Prior To 3'-Processing, Apo Form (Ui-Apo)
pdb|4E7I|A Chain A, Pfv Intasome Freeze-Trapped Prior To 3'-Processing,
Mn-Bound Form (Ui- Mn)
pdb|4E7I|B Chain B, Pfv Intasome Freeze-Trapped Prior To 3'-Processing,
Mn-Bound Form (Ui- Mn)
pdb|4E7J|A Chain A, Pfv Integrase Target Capture Complex, Apo Form (Tcc-Apo),
At 3.15 A Resolution
pdb|4E7J|B Chain B, Pfv Integrase Target Capture Complex, Apo Form (Tcc-Apo),
At 3.15 A Resolution
pdb|4E7K|A Chain A, Pfv Integrase Target Capture Complex (Tcc-Mn),
Freeze-Trapped Prior To Strand Transfer, At 3.0 A
Resolution
pdb|4E7K|B Chain B, Pfv Integrase Target Capture Complex (Tcc-Mn),
Freeze-Trapped Prior To Strand Transfer, At 3.0 A
Resolution
pdb|4E7L|A Chain A, Pfv Integrase Strand Transfer Complex (Stc-Mn) Following
Reaction In Crystallo, At 3.0 A Resolution.
pdb|4E7L|B Chain B, Pfv Integrase Strand Transfer Complex (Stc-Mn) Following
Reaction In Crystallo, At 3.0 A Resolution.
pdb|4BDY|A Chain A, Pfv Intasome With Inhibitor Xz-89
pdb|4BDY|B Chain B, Pfv Intasome With Inhibitor Xz-89
pdb|4BDZ|A Chain A, Pfv Intasome With Inhibitor Xz-90
pdb|4BDZ|B Chain B, Pfv Intasome With Inhibitor Xz-90
pdb|4BE0|A Chain A, Pfv Intasome With Inhibitor Xz-115
pdb|4BE0|B Chain B, Pfv Intasome With Inhibitor Xz-115
pdb|4BE1|A Chain A, Pfv Intasome With Inhibitor Xz-116
pdb|4BE1|B Chain B, Pfv Intasome With Inhibitor Xz-116
pdb|4BE2|A Chain A, Pfv Intasome With Inhibitor Xz-259
pdb|4BE2|B Chain B, Pfv Intasome With Inhibitor Xz-259
Length = 395
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 264 AAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG-ADISTL 322
A++R R+ K + L LN R + HLGN R T+S +NLK + + + A + L
Sbjct: 334 ASLRPRWHKPSTV-LKVLNPRTVVILDHLGNNR-TVSIDNLKPTSHQNGTTNDTATMDHL 391
Query: 323 ERN 325
E+N
Sbjct: 392 EKN 394
>pdb|3OYI|A Chain A, Crystal Structure Of The Pfv S217q Mutant Intasome In
Complex With Manganese
pdb|3OYI|B Chain B, Crystal Structure Of The Pfv S217q Mutant Intasome In
Complex With Manganese
pdb|3OYJ|A Chain A, Crystal Structure Of The Pfv S217q Mutant Intasome In
Complex With Magnesium And The Insti Mk2048
pdb|3OYJ|B Chain B, Crystal Structure Of The Pfv S217q Mutant Intasome In
Complex With Magnesium And The Insti Mk2048
Length = 395
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 264 AAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG-ADISTL 322
A++R R+ K + L LN R + HLGN R T+S +NLK + + + A + L
Sbjct: 334 ASLRPRWHKPSTV-LKVLNPRTVVILDHLGNNR-TVSIDNLKPTSHQNGTTNDTATMDHL 391
Query: 323 ERN 325
E+N
Sbjct: 392 EKN 394
>pdb|4BAC|A Chain A, Prototype Foamy Virus Strand Transfer Complexes On Product
Dna
pdb|4BAC|B Chain B, Prototype Foamy Virus Strand Transfer Complexes On Product
Dna
Length = 396
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 264 AAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG-ADISTL 322
A++R R+ K + L LN R + HLGN R T+S +NLK + + + A + L
Sbjct: 335 ASLRPRWHKPSTV-LKVLNPRTVVILDHLGNNR-TVSIDNLKPTSHQNGTTNDTATMDHL 392
Query: 323 ERN 325
E+N
Sbjct: 393 EKN 395
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWL 200
++ +L+GPPG GK+ A VA E ++SD+ SK L
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYD-ILEQNASDVRSKTL 118
>pdb|3OYM|A Chain A, Crystal Structure Of The Pfv N224h Mutant Intasome Bound
To Manganese
pdb|3OYM|B Chain B, Crystal Structure Of The Pfv N224h Mutant Intasome Bound
To Manganese
pdb|3OYN|A Chain A, Crystal Structure Of The Pfv N224h Mutant Intasome Bound
To Magnesium And The Insti Mk2048
pdb|3OYN|B Chain B, Crystal Structure Of The Pfv N224h Mutant Intasome Bound
To Magnesium And The Insti Mk2048
pdb|3S3O|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv) N224h
Mutant Intasome In Complex With Magnesium And
Dolutegravir (SGSK1349572)
pdb|3S3O|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv) N224h
Mutant Intasome In Complex With Magnesium And
Dolutegravir (SGSK1349572)
Length = 395
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 264 AAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG-ADISTL 322
A++R R+ K + L LN R + HLGN R T+S +NLK + + + A + L
Sbjct: 334 ASLRPRWHKPSTV-LKVLNPRTVVILDHLGNNR-TVSIDNLKPTSHQNGTTNDTATMDHL 391
Query: 323 ERN 325
E+N
Sbjct: 392 EKN 394
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 169 TGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSI 221
TG Y+AK A++ N + F+ S D ++K + + E AR + PSI
Sbjct: 157 TGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSI 209
>pdb|3OYK|A Chain A, Crystal Structure Of The Pfv S217h Mutant Intasome Bound
To Manganese
pdb|3OYK|B Chain B, Crystal Structure Of The Pfv S217h Mutant Intasome Bound
To Manganese
pdb|3OYL|A Chain A, Crystal Structure Of The Pfv S217h Mutant Intasome Bound
To Magnesium And The Insti Mk2048
pdb|3OYL|B Chain B, Crystal Structure Of The Pfv S217h Mutant Intasome Bound
To Magnesium And The Insti Mk2048
pdb|3S3N|A Chain A, Crystal Structure Of The Prototype Foamy Virus (Pfv) S217h
Mutant Intasome In Complex With Magnesium And
Dolutegravir (SGSK1349572)
pdb|3S3N|B Chain B, Crystal Structure Of The Prototype Foamy Virus (Pfv) S217h
Mutant Intasome In Complex With Magnesium And
Dolutegravir (SGSK1349572)
Length = 395
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 264 AAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG-ADISTL 322
A++R R+ K + L LN R + HLGN R T+S +NLK + + + A + L
Sbjct: 334 ASLRPRWHKPSTV-LKVLNPRTVVILDHLGNNR-TVSIDNLKPTSHQNGTTNDTATMDHL 391
Query: 323 ERN 325
E+N
Sbjct: 392 EKN 394
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
+ L GPPG GK+ LAK++A
Sbjct: 111 LCLAGPPGVGKTSLAKSIA 129
>pdb|1EIJ|A Chain A, Nmr Ensemble Of Methanobacterium Thermoautotrophicum
Protein 1615
Length = 80
Score = 28.1 bits (61), Expect = 6.7, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 291 HLGNTRNTISDENLKELAKRTEG 313
+G R+ I+DE LKEL KR G
Sbjct: 48 QMGRVRSKITDEQLKELLKRVAG 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,263,119
Number of Sequences: 62578
Number of extensions: 300748
Number of successful extensions: 945
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 96
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)