Query psy3808
Match_columns 330
No_of_seqs 344 out of 2934
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 17:57:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0739|consensus 100.0 7.7E-74 1.7E-78 477.0 26.2 325 3-329 6-349 (439)
2 KOG0738|consensus 100.0 2.4E-50 5.3E-55 347.3 26.9 221 106-329 193-431 (491)
3 COG1222 RPT1 ATP-dependent 26S 100.0 2.8E-48 6.1E-53 332.5 19.1 209 116-328 142-370 (406)
4 KOG0730|consensus 100.0 1.2E-45 2.7E-50 337.9 17.7 212 113-328 422-650 (693)
5 KOG0733|consensus 100.0 7.1E-43 1.5E-47 316.0 22.3 212 113-328 178-409 (802)
6 KOG0733|consensus 100.0 2.1E-43 4.5E-48 319.5 18.4 211 115-328 501-731 (802)
7 KOG0737|consensus 100.0 1.8E-41 4E-46 292.2 17.1 214 112-328 79-309 (386)
8 KOG0734|consensus 100.0 1.1E-40 2.3E-45 297.7 16.3 204 121-328 300-519 (752)
9 KOG0740|consensus 100.0 3.2E-40 6.9E-45 294.5 17.0 217 111-329 139-370 (428)
10 KOG0736|consensus 100.0 6.1E-40 1.3E-44 303.8 18.8 212 115-329 662-894 (953)
11 COG1223 Predicted ATPase (AAA+ 100.0 6.9E-38 1.5E-42 257.3 16.3 203 118-327 114-332 (368)
12 KOG0727|consensus 100.0 6.3E-38 1.4E-42 256.8 15.0 210 117-329 147-375 (408)
13 PTZ00454 26S protease regulato 100.0 1.3E-36 2.8E-41 276.3 20.3 210 116-329 136-365 (398)
14 KOG0735|consensus 100.0 1E-36 2.2E-41 280.1 19.1 206 121-329 663-884 (952)
15 KOG0731|consensus 100.0 8.7E-37 1.9E-41 287.8 18.2 206 119-328 305-531 (774)
16 COG0464 SpoVK ATPases of the A 100.0 3E-36 6.4E-41 285.4 21.4 213 114-329 231-461 (494)
17 KOG0652|consensus 100.0 2.1E-36 4.6E-41 248.9 14.8 213 112-328 158-390 (424)
18 KOG0726|consensus 100.0 1.8E-36 3.9E-41 252.7 10.2 208 117-328 177-404 (440)
19 TIGR01243 CDC48 AAA family ATP 100.0 3.1E-35 6.7E-40 289.5 20.8 210 116-329 444-671 (733)
20 KOG0728|consensus 100.0 1.6E-35 3.4E-40 242.5 15.2 210 115-328 137-366 (404)
21 PRK03992 proteasome-activating 100.0 6.7E-35 1.4E-39 266.5 19.6 212 115-329 121-351 (389)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-34 2.6E-39 268.7 21.4 210 115-328 218-442 (489)
23 KOG0729|consensus 100.0 1.7E-35 3.7E-40 244.3 13.7 210 116-328 168-396 (435)
24 COG0465 HflB ATP-dependent Zn 100.0 2.8E-34 6.1E-39 266.6 16.2 206 119-328 144-368 (596)
25 PTZ00361 26 proteosome regulat 100.0 6.4E-34 1.4E-38 260.1 17.7 209 116-328 174-402 (438)
26 TIGR01241 FtsH_fam ATP-depende 100.0 2.9E-33 6.3E-38 264.2 19.0 207 117-328 47-273 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 3E-32 6.4E-37 248.2 19.2 212 115-329 112-342 (364)
28 TIGR03689 pup_AAA proteasome A 100.0 9.2E-32 2E-36 249.1 20.1 208 111-326 168-406 (512)
29 KOG0732|consensus 100.0 3E-32 6.5E-37 263.6 17.2 209 119-329 259-488 (1080)
30 KOG0651|consensus 100.0 1.9E-32 4.1E-37 230.6 13.3 209 117-327 124-350 (388)
31 CHL00176 ftsH cell division pr 100.0 2.2E-31 4.7E-36 254.3 19.0 205 119-328 177-401 (638)
32 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.7E-31 1.9E-35 263.6 18.1 173 154-328 1626-1855(2281)
33 KOG0730|consensus 100.0 2.2E-30 4.8E-35 238.0 17.6 205 120-329 180-400 (693)
34 PLN00020 ribulose bisphosphate 100.0 7.1E-30 1.5E-34 222.9 16.6 167 154-326 144-347 (413)
35 PRK10733 hflB ATP-dependent me 100.0 7.6E-30 1.6E-34 246.4 18.5 204 120-328 147-370 (644)
36 TIGR01243 CDC48 AAA family ATP 100.0 2.7E-29 5.8E-34 247.5 20.2 206 119-328 172-394 (733)
37 KOG0741|consensus 99.9 6.7E-27 1.4E-31 209.5 10.4 210 117-327 211-452 (744)
38 TIGR02881 spore_V_K stage V sp 99.9 4.4E-23 9.6E-28 179.6 17.4 201 123-327 4-235 (261)
39 CHL00181 cbbX CbbX; Provisiona 99.9 4.1E-23 9E-28 180.9 16.3 195 126-328 24-252 (287)
40 PF05496 RuvB_N: Holliday junc 99.9 4.1E-23 8.8E-28 169.6 14.4 191 118-325 17-224 (233)
41 KOG0742|consensus 99.9 9.3E-23 2E-27 178.1 17.1 200 119-324 349-586 (630)
42 TIGR02880 cbbX_cfxQ probable R 99.9 2.1E-22 4.6E-27 176.6 16.5 195 126-328 23-251 (284)
43 COG2256 MGS1 ATPase related to 99.9 1.4E-21 3.1E-26 171.1 17.6 181 119-323 18-214 (436)
44 KOG0744|consensus 99.9 1.1E-21 2.4E-26 166.7 11.2 199 123-322 140-388 (423)
45 PRK14956 DNA polymerase III su 99.9 1.4E-20 3E-25 172.5 18.1 189 115-322 8-223 (484)
46 PF00004 AAA: ATPase family as 99.9 1.1E-20 2.4E-25 147.5 13.6 116 161-278 1-132 (132)
47 TIGR00635 ruvB Holliday juncti 99.8 9.9E-20 2.2E-24 162.6 18.8 186 123-326 2-205 (305)
48 COG2255 RuvB Holliday junction 99.8 9.9E-20 2.2E-24 152.6 16.8 183 118-316 19-218 (332)
49 PRK07003 DNA polymerase III su 99.8 5.4E-20 1.2E-24 174.7 17.2 188 115-321 6-220 (830)
50 PRK12323 DNA polymerase III su 99.8 4.4E-20 9.4E-25 173.2 16.2 190 115-324 6-227 (700)
51 PRK14962 DNA polymerase III su 99.8 8E-20 1.7E-24 169.9 17.3 190 115-323 4-220 (472)
52 PRK00080 ruvB Holliday junctio 99.8 2.4E-19 5.1E-24 161.3 19.2 189 118-324 18-224 (328)
53 KOG0743|consensus 99.8 9.3E-20 2E-24 162.4 16.1 187 122-321 198-411 (457)
54 TIGR00763 lon ATP-dependent pr 99.8 5.2E-19 1.1E-23 175.2 22.0 191 126-326 321-554 (775)
55 KOG0989|consensus 99.8 1.6E-19 3.4E-24 153.0 15.0 195 113-324 24-233 (346)
56 PRK14960 DNA polymerase III su 99.8 2.8E-19 6.2E-24 168.2 17.5 191 115-325 5-222 (702)
57 PRK14949 DNA polymerase III su 99.8 3.8E-19 8.2E-24 172.0 18.6 196 116-325 7-223 (944)
58 PRK14961 DNA polymerase III su 99.8 4E-19 8.7E-24 161.6 17.7 191 115-325 6-223 (363)
59 PRK14964 DNA polymerase III su 99.8 4E-19 8.6E-24 164.6 17.4 191 116-326 4-221 (491)
60 PLN03025 replication factor C 99.8 5.7E-19 1.2E-23 158.2 17.9 185 115-322 3-201 (319)
61 PRK07994 DNA polymerase III su 99.8 7.2E-19 1.6E-23 167.5 17.5 186 116-320 7-219 (647)
62 PRK14958 DNA polymerase III su 99.8 4.9E-19 1.1E-23 166.4 15.9 192 115-326 6-224 (509)
63 KOG0735|consensus 99.8 4.1E-19 8.8E-24 164.8 14.9 194 125-329 408-623 (952)
64 TIGR02639 ClpA ATP-dependent C 99.8 8.1E-19 1.7E-23 173.0 17.7 180 118-316 175-386 (731)
65 PRK06645 DNA polymerase III su 99.8 1.4E-18 3.1E-23 162.2 17.8 198 115-326 11-233 (507)
66 PRK14963 DNA polymerase III su 99.8 1.7E-18 3.8E-23 162.3 18.2 186 115-319 4-215 (504)
67 PRK08691 DNA polymerase III su 99.8 1.4E-18 3E-23 164.9 16.9 198 115-326 6-224 (709)
68 KOG0736|consensus 99.8 4.9E-18 1.1E-22 159.0 19.0 164 160-326 433-609 (953)
69 PRK04195 replication factor C 99.8 4.6E-18 1E-22 160.4 19.2 188 115-324 4-205 (482)
70 PRK05563 DNA polymerase III su 99.8 3.3E-18 7.2E-23 162.9 17.8 190 115-324 6-222 (559)
71 PRK14951 DNA polymerase III su 99.8 3.4E-18 7.4E-23 162.6 17.8 196 115-324 6-227 (618)
72 PRK14952 DNA polymerase III su 99.8 4.4E-18 9.5E-23 161.3 18.4 184 115-317 3-215 (584)
73 PRK05896 DNA polymerase III su 99.8 3.2E-18 7E-23 160.9 17.0 186 115-319 6-218 (605)
74 PRK07940 DNA polymerase III su 99.8 6E-18 1.3E-22 154.0 17.3 187 122-322 2-214 (394)
75 PRK14957 DNA polymerase III su 99.8 5.7E-18 1.2E-22 159.1 17.6 185 116-319 7-218 (546)
76 PF05673 DUF815: Protein of un 99.8 4.4E-17 9.4E-22 136.0 20.6 192 117-325 19-244 (249)
77 COG0542 clpA ATP-binding subun 99.8 3.9E-17 8.5E-22 156.5 22.8 197 126-325 492-749 (786)
78 PRK07133 DNA polymerase III su 99.8 8E-18 1.7E-22 161.3 17.8 192 115-319 8-217 (725)
79 PHA02544 44 clamp loader, smal 99.8 1.5E-17 3.2E-22 149.3 18.4 186 114-319 10-207 (316)
80 PRK14959 DNA polymerase III su 99.8 7.5E-18 1.6E-22 159.2 17.1 189 115-322 6-221 (624)
81 PRK07764 DNA polymerase III su 99.8 8.7E-18 1.9E-22 165.0 17.8 187 115-316 5-216 (824)
82 PRK14969 DNA polymerase III su 99.8 6.2E-18 1.3E-22 159.9 15.4 190 115-324 6-222 (527)
83 KOG2028|consensus 99.8 7E-18 1.5E-22 145.9 13.7 186 118-323 131-338 (554)
84 PRK14965 DNA polymerase III su 99.8 8.9E-18 1.9E-22 160.6 15.5 187 115-320 6-219 (576)
85 PRK12402 replication factor C 99.8 4E-17 8.7E-22 147.9 18.5 185 115-316 5-221 (337)
86 PRK08451 DNA polymerase III su 99.8 2.4E-17 5.1E-22 154.2 17.3 192 115-326 4-222 (535)
87 PRK06647 DNA polymerase III su 99.8 3.4E-17 7.3E-22 155.4 18.1 196 115-324 6-222 (563)
88 PRK14953 DNA polymerase III su 99.8 1.6E-17 3.4E-22 155.4 15.5 197 115-325 6-223 (486)
89 PRK13342 recombination factor 99.8 3.3E-17 7.1E-22 151.7 17.3 184 117-325 4-199 (413)
90 PRK06305 DNA polymerase III su 99.8 4.2E-17 9.1E-22 151.6 17.8 190 116-318 8-219 (451)
91 TIGR02397 dnaX_nterm DNA polym 99.8 3.6E-17 7.8E-22 149.2 16.5 188 116-323 5-219 (355)
92 TIGR02902 spore_lonB ATP-depen 99.7 4E-17 8.7E-22 154.9 17.1 199 114-327 54-309 (531)
93 TIGR03345 VI_ClpV1 type VI sec 99.7 5.4E-17 1.2E-21 161.2 18.6 185 117-316 179-391 (852)
94 PRK09111 DNA polymerase III su 99.7 4.8E-17 1E-21 155.1 17.5 197 115-325 14-236 (598)
95 PRK11034 clpA ATP-dependent Cl 99.7 4.8E-17 1E-21 158.8 17.7 195 118-327 179-406 (758)
96 COG2812 DnaX DNA polymerase II 99.7 1.7E-17 3.8E-22 153.3 13.5 198 115-326 6-224 (515)
97 PRK14970 DNA polymerase III su 99.7 6.9E-17 1.5E-21 147.8 17.3 182 116-316 8-204 (367)
98 PRK14955 DNA polymerase III su 99.7 6.5E-17 1.4E-21 148.8 15.7 188 116-316 7-223 (397)
99 PRK10865 protein disaggregatio 99.7 9.3E-17 2E-21 160.0 17.8 183 118-315 171-381 (857)
100 KOG2004|consensus 99.7 1E-15 2.2E-20 142.7 23.1 193 126-328 412-647 (906)
101 PRK06893 DNA replication initi 99.7 2.7E-16 5.8E-21 134.1 17.6 178 119-317 10-199 (229)
102 PRK00440 rfc replication facto 99.7 2.7E-16 5.8E-21 141.4 18.4 186 114-322 6-204 (319)
103 PRK14954 DNA polymerase III su 99.7 2.2E-16 4.8E-21 150.7 18.1 190 116-318 7-225 (620)
104 PRK08084 DNA replication initi 99.7 4.6E-16 1E-20 133.1 18.1 176 119-317 16-205 (235)
105 PRK14948 DNA polymerase III su 99.7 2.3E-16 5.1E-21 151.4 18.0 190 116-318 7-219 (620)
106 CHL00095 clpC Clp protease ATP 99.7 2.7E-16 5.8E-21 156.9 18.0 179 119-316 173-382 (821)
107 PRK13341 recombination factor 99.7 2.9E-16 6.4E-21 152.6 17.3 186 116-326 19-221 (725)
108 PRK00149 dnaA chromosomal repl 99.7 3E-16 6.5E-21 147.0 16.7 185 119-316 116-317 (450)
109 TIGR03346 chaperone_ClpB ATP-d 99.7 4.4E-16 9.6E-21 155.8 18.0 187 115-316 163-377 (852)
110 PF00308 Bac_DnaA: Bacterial d 99.7 7.1E-16 1.5E-20 130.3 16.5 192 119-324 2-210 (219)
111 TIGR00362 DnaA chromosomal rep 99.7 6.1E-16 1.3E-20 143.3 17.3 185 119-316 104-305 (405)
112 PRK14950 DNA polymerase III su 99.7 4.3E-16 9.3E-21 149.8 16.7 184 116-318 7-218 (585)
113 COG0466 Lon ATP-dependent Lon 99.7 8.9E-16 1.9E-20 143.6 17.9 193 126-328 324-559 (782)
114 PRK08903 DnaA regulatory inact 99.7 2E-15 4.4E-20 128.9 18.2 180 119-325 12-202 (227)
115 PRK14971 DNA polymerase III su 99.7 8.8E-16 1.9E-20 147.4 17.4 185 116-319 8-220 (614)
116 PRK05342 clpX ATP-dependent pr 99.7 1.4E-15 3.1E-20 139.1 17.9 199 127-327 73-375 (412)
117 KOG0991|consensus 99.7 1.8E-16 4E-21 129.3 10.6 191 115-325 17-218 (333)
118 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.8E-15 3.9E-20 129.2 17.2 182 120-326 10-205 (226)
119 PRK11034 clpA ATP-dependent Cl 99.7 6.3E-16 1.4E-20 151.0 15.8 195 126-325 459-710 (758)
120 PRK14088 dnaA chromosomal repl 99.7 6.1E-16 1.3E-20 143.7 15.0 183 119-315 99-299 (440)
121 PRK06620 hypothetical protein; 99.7 2.6E-15 5.6E-20 126.3 17.0 168 119-317 10-185 (214)
122 TIGR03345 VI_ClpV1 type VI sec 99.7 1.8E-14 3.9E-19 143.4 25.7 194 126-325 567-825 (852)
123 CHL00095 clpC Clp protease ATP 99.7 1.7E-14 3.8E-19 144.0 24.8 197 125-325 509-776 (821)
124 PRK08727 hypothetical protein; 99.7 5.6E-15 1.2E-19 126.3 18.0 175 120-318 14-201 (233)
125 PRK12422 chromosomal replicati 99.7 3.6E-15 7.8E-20 138.2 17.4 189 119-316 105-308 (445)
126 TIGR02639 ClpA ATP-dependent C 99.7 2.9E-15 6.3E-20 147.9 17.5 196 126-327 455-708 (731)
127 PRK10787 DNA-binding ATP-depen 99.7 3.4E-15 7.3E-20 147.0 17.4 173 126-309 323-533 (784)
128 TIGR02903 spore_lon_C ATP-depe 99.7 1.1E-14 2.3E-19 140.5 20.5 183 117-312 146-386 (615)
129 TIGR00382 clpX endopeptidase C 99.7 5.9E-15 1.3E-19 134.3 17.2 200 127-328 79-382 (413)
130 COG2607 Predicted ATPase (AAA+ 99.6 2.5E-14 5.5E-19 117.5 18.8 192 117-325 52-276 (287)
131 TIGR00390 hslU ATP-dependent p 99.6 5.8E-15 1.3E-19 132.7 16.2 183 127-311 14-378 (441)
132 PRK14086 dnaA chromosomal repl 99.6 4.5E-15 9.9E-20 139.9 16.2 182 119-314 282-481 (617)
133 PRK05642 DNA replication initi 99.6 1.5E-14 3.3E-19 123.6 18.1 147 158-316 45-203 (234)
134 PRK05201 hslU ATP-dependent pr 99.6 4.8E-15 1E-19 133.2 13.8 183 127-311 17-380 (443)
135 PRK05564 DNA polymerase III su 99.6 2.3E-14 5E-19 128.2 17.5 173 123-316 2-185 (313)
136 PRK14087 dnaA chromosomal repl 99.6 2.2E-14 4.7E-19 133.5 17.8 191 121-326 111-323 (450)
137 PRK09112 DNA polymerase III su 99.6 1.6E-14 3.5E-19 129.9 15.9 189 119-322 17-241 (351)
138 PRK10865 protein disaggregatio 99.6 1E-13 2.3E-18 138.4 22.7 200 124-326 567-824 (857)
139 PRK07471 DNA polymerase III su 99.6 3.2E-14 6.9E-19 128.7 17.0 185 119-320 13-237 (365)
140 PTZ00112 origin recognition co 99.6 7.5E-14 1.6E-18 134.2 18.5 197 121-326 751-985 (1164)
141 TIGR03346 chaperone_ClpB ATP-d 99.6 6.3E-14 1.4E-18 140.4 17.7 201 125-328 565-823 (852)
142 TIGR02928 orc1/cdc6 family rep 99.6 2.3E-13 5E-18 124.7 19.4 198 120-327 10-251 (365)
143 PRK00411 cdc6 cell division co 99.6 1.9E-13 4.2E-18 126.4 18.5 198 120-326 25-258 (394)
144 PRK09087 hypothetical protein; 99.6 1.7E-13 3.8E-18 116.2 16.1 166 120-317 16-191 (226)
145 COG0593 DnaA ATPase involved i 99.6 1.5E-13 3.2E-18 123.9 16.4 184 118-314 80-279 (408)
146 COG0464 SpoVK ATPases of the A 99.6 8.8E-14 1.9E-18 132.2 15.8 167 156-328 16-198 (494)
147 PRK07399 DNA polymerase III su 99.6 1.6E-13 3.5E-18 121.8 16.3 183 123-322 2-222 (314)
148 cd02684 MIT_2 MIT: domain cont 99.5 6.9E-14 1.5E-18 96.3 10.2 72 3-75 2-73 (75)
149 TIGR02640 gas_vesic_GvpN gas v 99.5 3.6E-13 7.7E-18 117.2 17.1 129 159-292 22-198 (262)
150 cd02681 MIT_calpain7_1 MIT: do 99.5 8.2E-14 1.8E-18 95.5 10.0 70 5-74 4-73 (76)
151 COG1224 TIP49 DNA helicase TIP 99.5 7.4E-13 1.6E-17 114.8 18.2 92 219-313 292-395 (450)
152 PF06068 TIP49: TIP49 C-termin 99.5 3.1E-13 6.7E-18 118.8 15.3 96 219-317 279-386 (398)
153 TIGR00678 holB DNA polymerase 99.5 2.9E-13 6.3E-18 112.2 14.2 146 158-316 14-186 (188)
154 cd00009 AAA The AAA+ (ATPases 99.5 5E-13 1.1E-17 105.6 14.4 137 129-278 2-151 (151)
155 PRK08058 DNA polymerase III su 99.5 8.1E-13 1.7E-17 118.7 16.8 165 123-311 3-195 (329)
156 cd02683 MIT_1 MIT: domain cont 99.5 2.3E-13 5.1E-18 94.1 10.0 71 4-75 3-73 (77)
157 KOG1969|consensus 99.5 6.1E-13 1.3E-17 124.7 15.1 203 114-322 260-511 (877)
158 COG0470 HolB ATPase involved i 99.5 1.8E-13 3.8E-18 123.4 10.9 149 126-288 2-177 (325)
159 PRK05707 DNA polymerase III su 99.5 1.1E-12 2.4E-17 117.1 15.5 154 156-318 20-200 (328)
160 PRK13407 bchI magnesium chelat 99.5 1.7E-13 3.8E-18 121.9 9.9 161 120-292 3-216 (334)
161 PHA02244 ATPase-like protein 99.5 3E-12 6.5E-17 113.7 17.5 121 159-283 120-265 (383)
162 KOG2035|consensus 99.5 3.1E-12 6.7E-17 107.3 15.5 189 115-320 3-227 (351)
163 PRK04132 replication factor C 99.5 2.1E-12 4.5E-17 126.7 16.2 163 154-324 560-734 (846)
164 TIGR01650 PD_CobS cobaltochela 99.4 2.1E-12 4.5E-17 113.5 13.4 132 159-293 65-234 (327)
165 PRK06871 DNA polymerase III su 99.4 1.8E-11 3.8E-16 108.7 17.5 150 158-318 24-200 (325)
166 PRK07993 DNA polymerase III su 99.4 1.2E-11 2.6E-16 110.8 16.3 156 157-319 23-202 (334)
167 CHL00081 chlI Mg-protoporyphyr 99.4 5E-12 1.1E-16 112.8 13.8 162 118-292 10-232 (350)
168 COG1219 ClpX ATP-dependent pro 99.4 1E-11 2.2E-16 106.2 14.8 197 127-327 63-364 (408)
169 cd02678 MIT_VPS4 MIT: domain c 99.4 4.4E-12 9.5E-17 87.9 10.4 72 3-75 2-73 (75)
170 cd02677 MIT_SNX15 MIT: domain 99.4 3.8E-12 8.2E-17 87.4 9.4 68 3-71 2-69 (75)
171 PRK08769 DNA polymerase III su 99.4 2.3E-11 4.9E-16 107.8 16.3 155 158-320 26-207 (319)
172 PF04212 MIT: MIT (microtubule 99.4 7.2E-12 1.6E-16 85.6 10.3 69 3-72 1-69 (69)
173 PF01078 Mg_chelatase: Magnesi 99.4 1.8E-13 3.9E-18 112.1 2.7 46 123-182 1-46 (206)
174 COG0542 clpA ATP-binding subun 99.4 1.6E-11 3.5E-16 118.3 16.4 185 116-316 161-374 (786)
175 cd02682 MIT_AAA_Arch MIT: doma 99.4 6.4E-12 1.4E-16 85.3 9.6 67 5-72 4-70 (75)
176 smart00382 AAA ATPases associa 99.4 9.3E-12 2E-16 97.5 11.3 120 159-279 3-147 (148)
177 PRK11331 5-methylcytosine-spec 99.3 2.7E-11 5.7E-16 110.6 14.4 139 124-278 174-357 (459)
178 PF13177 DNA_pol3_delta2: DNA 99.3 1.2E-11 2.6E-16 99.6 10.8 135 129-279 1-161 (162)
179 PRK06964 DNA polymerase III su 99.3 2.9E-11 6.3E-16 108.0 14.2 132 157-290 20-202 (342)
180 KOG0990|consensus 99.3 7.6E-12 1.6E-16 107.2 9.7 190 114-323 30-234 (360)
181 TIGR02030 BchI-ChlI magnesium 99.3 2.7E-11 5.9E-16 108.2 13.7 157 123-291 2-218 (337)
182 COG0714 MoxR-like ATPases [Gen 99.3 2.6E-11 5.6E-16 109.3 13.5 151 127-292 26-203 (329)
183 KOG1942|consensus 99.3 1.1E-10 2.4E-15 98.9 15.7 92 218-312 296-400 (456)
184 cd02680 MIT_calpain7_2 MIT: do 99.3 1.9E-11 4.2E-16 83.2 8.9 67 3-74 2-72 (75)
185 TIGR00602 rad24 checkpoint pro 99.3 4.9E-11 1.1E-15 114.3 15.0 198 114-323 73-325 (637)
186 PF07728 AAA_5: AAA domain (dy 99.3 5.6E-13 1.2E-17 104.9 1.5 108 160-270 1-139 (139)
187 PRK06090 DNA polymerase III su 99.3 1.9E-10 4.1E-15 101.9 16.7 148 157-317 24-197 (319)
188 TIGR02974 phageshock_pspF psp 99.3 1.8E-11 3.9E-16 109.8 9.9 167 159-328 23-231 (329)
189 cd02656 MIT MIT: domain contai 99.3 5.5E-11 1.2E-15 82.7 10.2 71 3-74 2-72 (75)
190 TIGR01817 nifA Nif-specific re 99.3 7.1E-11 1.5E-15 113.3 14.2 192 120-328 191-426 (534)
191 COG1474 CDC6 Cdc6-related prot 99.3 2E-10 4.3E-15 104.0 16.2 192 125-326 17-241 (366)
192 TIGR02442 Cob-chelat-sub cobal 99.3 2.1E-11 4.5E-16 118.6 10.4 157 123-291 2-213 (633)
193 TIGR03015 pepcterm_ATPase puta 99.3 5.3E-10 1.2E-14 98.0 18.1 166 160-328 45-244 (269)
194 PRK13531 regulatory ATPase Rav 99.2 1.5E-10 3.2E-15 106.6 14.4 152 126-291 21-193 (498)
195 COG3829 RocR Transcriptional r 99.2 5E-11 1.1E-15 109.4 10.8 197 118-328 238-477 (560)
196 smart00763 AAA_PrkA PrkA AAA d 99.2 3.9E-10 8.5E-15 100.3 15.9 64 123-192 48-118 (361)
197 KOG0741|consensus 99.2 6.6E-11 1.4E-15 107.6 10.8 133 155-290 535-684 (744)
198 PRK11608 pspF phage shock prot 99.2 3.6E-10 7.8E-15 101.4 15.5 191 123-328 4-238 (326)
199 COG1220 HslU ATP-dependent pro 99.2 1.3E-10 2.8E-15 100.4 11.8 65 127-192 17-83 (444)
200 PF07724 AAA_2: AAA domain (Cd 99.2 3.6E-11 7.7E-16 97.4 8.1 101 157-260 2-131 (171)
201 PRK15429 formate hydrogenlyase 99.2 6.6E-10 1.4E-14 109.7 18.2 193 121-328 372-607 (686)
202 smart00745 MIT Microtubule Int 99.2 1.8E-10 3.8E-15 80.6 10.1 72 2-74 3-74 (77)
203 TIGR02329 propionate_PrpR prop 99.2 1.3E-10 2.9E-15 109.8 12.6 194 121-328 208-448 (526)
204 PRK10820 DNA-binding transcrip 99.2 3E-10 6.6E-15 108.2 15.1 196 119-328 198-435 (520)
205 TIGR00368 Mg chelatase-related 99.2 8E-11 1.7E-15 110.6 10.8 144 122-283 189-395 (499)
206 smart00350 MCM minichromosome 99.2 1.4E-10 3.1E-15 110.1 12.0 162 126-293 204-401 (509)
207 COG2204 AtoC Response regulato 99.2 3E-10 6.6E-15 104.2 13.5 193 122-328 138-372 (464)
208 PRK11388 DNA-binding transcrip 99.2 4.1E-10 8.9E-15 110.4 15.0 195 120-328 320-552 (638)
209 PRK15424 propionate catabolism 99.2 2.2E-10 4.9E-15 108.3 12.6 193 122-328 216-463 (538)
210 KOG0745|consensus 99.2 7.5E-10 1.6E-14 98.6 14.6 169 159-329 227-507 (564)
211 PRK05022 anaerobic nitric oxid 99.2 8.2E-10 1.8E-14 105.2 16.0 191 123-328 185-418 (509)
212 PRK08116 hypothetical protein; 99.2 3.8E-10 8.2E-15 98.3 11.9 118 159-281 115-251 (268)
213 COG1221 PspF Transcriptional r 99.2 1.3E-10 2.8E-15 104.7 8.9 196 120-328 73-307 (403)
214 PRK12377 putative replication 99.1 2.3E-10 5E-15 97.9 9.6 138 118-270 67-222 (248)
215 TIGR00764 lon_rel lon-related 99.1 2.5E-09 5.5E-14 103.2 16.9 53 117-183 10-62 (608)
216 COG0606 Predicted ATPase with 99.1 5.3E-11 1.2E-15 107.8 4.5 146 122-284 176-384 (490)
217 PRK08699 DNA polymerase III su 99.1 5.6E-10 1.2E-14 99.7 10.9 130 157-290 20-183 (325)
218 COG1239 ChlI Mg-chelatase subu 99.1 2.8E-09 6.1E-14 95.4 14.9 160 121-294 13-234 (423)
219 PRK05917 DNA polymerase III su 99.1 2.8E-09 6E-14 92.7 14.3 117 158-279 19-154 (290)
220 PF07726 AAA_3: ATPase family 99.1 5.6E-11 1.2E-15 89.5 1.9 102 160-270 1-129 (131)
221 KOG2680|consensus 99.0 1.3E-08 2.9E-13 86.8 15.7 93 219-314 289-393 (454)
222 KOG1051|consensus 99.0 1.7E-09 3.8E-14 105.9 11.6 126 126-258 563-710 (898)
223 PF03215 Rad17: Rad17 cell cyc 99.0 7.8E-09 1.7E-13 97.5 15.6 198 113-323 7-265 (519)
224 PRK07952 DNA replication prote 99.0 2.2E-09 4.7E-14 91.7 10.3 107 159-270 100-221 (244)
225 COG3604 FhlA Transcriptional r 99.0 3.3E-09 7E-14 96.5 11.6 196 119-328 217-454 (550)
226 PRK08181 transposase; Validate 99.0 1.9E-09 4.1E-14 93.5 9.0 120 159-283 107-246 (269)
227 PF00158 Sigma54_activat: Sigm 99.0 6.3E-09 1.4E-13 84.1 11.3 98 159-259 23-144 (168)
228 TIGR02031 BchD-ChlD magnesium 99.0 4.2E-09 9.2E-14 101.5 11.7 134 159-292 17-174 (589)
229 PRK09862 putative ATP-dependen 99.0 2.1E-09 4.5E-14 100.7 9.3 143 122-282 188-391 (506)
230 TIGR02915 PEP_resp_reg putativ 98.9 1.4E-08 3E-13 95.6 13.9 189 123-328 137-370 (445)
231 PTZ00111 DNA replication licen 98.9 4.9E-09 1.1E-13 102.9 10.6 162 127-292 452-657 (915)
232 PF01637 Arch_ATPase: Archaeal 98.9 3.6E-09 7.7E-14 90.4 8.4 175 127-316 1-229 (234)
233 PRK07276 DNA polymerase III su 98.9 8.1E-08 1.8E-12 83.9 16.6 143 130-288 7-171 (290)
234 PRK05818 DNA polymerase III su 98.9 3.1E-08 6.8E-13 84.4 13.3 121 157-279 6-147 (261)
235 PRK10923 glnG nitrogen regulat 98.9 2E-08 4.3E-13 95.2 13.1 188 123-328 136-369 (469)
236 PRK06835 DNA replication prote 98.9 6.4E-09 1.4E-13 92.8 9.0 109 159-271 184-306 (329)
237 KOG2227|consensus 98.9 1.2E-07 2.6E-12 85.7 16.6 186 125-320 150-366 (529)
238 PF14532 Sigma54_activ_2: Sigm 98.9 1E-08 2.2E-13 80.4 8.7 104 159-278 22-137 (138)
239 PRK06526 transposase; Provisio 98.9 5.6E-09 1.2E-13 90.1 7.4 95 159-259 99-201 (254)
240 PRK08939 primosomal protein Dn 98.9 7.5E-09 1.6E-13 91.7 8.3 67 158-226 156-225 (306)
241 KOG1970|consensus 98.9 2.6E-07 5.6E-12 85.1 17.8 202 112-322 69-316 (634)
242 COG1484 DnaC DNA replication p 98.9 6.5E-09 1.4E-13 89.7 7.2 98 158-260 105-210 (254)
243 PRK07132 DNA polymerase III su 98.8 1.6E-07 3.5E-12 82.7 15.6 142 159-313 19-177 (299)
244 KOG1514|consensus 98.8 1.7E-07 3.7E-12 88.6 16.3 165 159-326 423-624 (767)
245 PF13173 AAA_14: AAA domain 98.8 2.1E-08 4.5E-13 77.5 8.1 117 159-283 3-126 (128)
246 PF05621 TniB: Bacterial TniB 98.8 4.7E-07 1E-11 78.6 16.8 167 159-328 62-267 (302)
247 PRK11361 acetoacetate metaboli 98.8 1.5E-07 3.2E-12 89.0 14.8 188 124-328 142-374 (457)
248 PF12775 AAA_7: P-loop contain 98.8 3.6E-09 7.8E-14 92.2 3.2 127 159-293 34-194 (272)
249 PRK09183 transposase/IS protei 98.8 2.1E-08 4.6E-13 87.0 7.8 97 159-259 103-206 (259)
250 PRK06921 hypothetical protein; 98.7 2.6E-08 5.7E-13 86.6 7.7 106 158-269 117-239 (266)
251 TIGR01818 ntrC nitrogen regula 98.7 2.8E-07 6.1E-12 87.2 14.9 187 125-328 134-365 (463)
252 PF01695 IstB_IS21: IstB-like 98.7 7.9E-09 1.7E-13 84.4 3.2 96 159-259 48-150 (178)
253 PF03969 AFG1_ATPase: AFG1-lik 98.7 7.6E-08 1.6E-12 87.1 8.7 100 156-259 60-168 (362)
254 PRK15115 response regulator Gl 98.7 7E-07 1.5E-11 84.1 15.5 162 159-328 158-365 (444)
255 PF13401 AAA_22: AAA domain; P 98.7 2E-07 4.4E-12 72.1 9.9 97 159-256 5-125 (131)
256 PRK13765 ATP-dependent proteas 98.7 4.9E-07 1.1E-11 87.4 14.5 53 117-183 23-75 (637)
257 PF00931 NB-ARC: NB-ARC domain 98.6 5.2E-07 1.1E-11 79.8 12.0 152 158-315 19-196 (287)
258 PRK10365 transcriptional regul 98.6 1.9E-06 4.1E-11 81.0 14.9 162 159-328 163-370 (441)
259 PF00493 MCM: MCM2/3/5 family 98.6 5.7E-08 1.2E-12 87.4 4.2 157 126-295 25-224 (331)
260 PF05729 NACHT: NACHT domain 98.5 1.8E-06 4E-11 69.4 11.6 130 160-294 2-165 (166)
261 PLN03210 Resistant to P. syrin 98.5 7.4E-06 1.6E-10 85.8 18.6 177 119-315 178-389 (1153)
262 PF00910 RNA_helicase: RNA hel 98.5 8.8E-07 1.9E-11 66.1 7.9 22 161-182 1-22 (107)
263 COG3267 ExeA Type II secretory 98.5 1.4E-05 3.1E-10 67.2 15.8 166 160-327 53-250 (269)
264 KOG1968|consensus 98.4 1.1E-06 2.5E-11 87.1 10.3 200 114-320 309-530 (871)
265 PRK07261 topology modulation p 98.4 2.9E-06 6.3E-11 69.0 10.0 32 160-192 2-33 (171)
266 PRK13406 bchD magnesium chelat 98.4 3.4E-06 7.4E-11 81.0 11.9 124 159-283 26-173 (584)
267 COG3283 TyrR Transcriptional r 98.4 9E-06 2E-10 71.5 13.1 194 120-327 199-429 (511)
268 COG1241 MCM2 Predicted ATPase 98.4 3.5E-07 7.5E-12 88.0 4.9 160 126-292 287-483 (682)
269 cd01120 RecA-like_NTPases RecA 98.4 6.1E-06 1.3E-10 66.1 11.3 32 161-192 2-35 (165)
270 KOG2170|consensus 98.3 3.2E-05 6.9E-10 66.6 15.3 182 127-314 84-322 (344)
271 PRK15455 PrkA family serine pr 98.3 6.2E-07 1.4E-11 84.2 5.5 65 122-192 73-137 (644)
272 COG1485 Predicted ATPase [Gene 98.3 3.7E-06 8E-11 74.0 9.8 103 150-259 57-171 (367)
273 KOG0480|consensus 98.3 1.8E-06 3.9E-11 80.8 8.3 166 124-296 344-546 (764)
274 KOG0478|consensus 98.3 3.2E-06 7E-11 79.8 10.0 161 126-292 430-626 (804)
275 PHA02774 E1; Provisional 98.3 5.3E-06 1.1E-10 78.1 11.3 34 159-192 435-468 (613)
276 PRK06581 DNA polymerase III su 98.3 1.7E-05 3.7E-10 66.6 12.9 133 159-295 16-164 (263)
277 PHA00729 NTP-binding motif con 98.3 6.4E-06 1.4E-10 69.1 10.3 24 159-182 18-41 (226)
278 KOG2228|consensus 98.3 5.2E-06 1.1E-10 72.4 9.2 158 126-292 25-219 (408)
279 PF12774 AAA_6: Hydrolytic ATP 98.3 8.9E-06 1.9E-10 69.1 10.6 120 159-288 33-176 (231)
280 PHA02624 large T antigen; Prov 98.2 7.7E-06 1.7E-10 77.3 10.5 104 159-278 432-561 (647)
281 PRK08118 topology modulation p 98.2 3.3E-06 7.2E-11 68.3 6.8 32 160-192 3-34 (167)
282 PRK12723 flagellar biosynthesi 98.2 5.5E-05 1.2E-09 69.1 15.3 157 158-318 174-374 (388)
283 cd01124 KaiC KaiC is a circadi 98.2 9.5E-06 2.1E-10 66.9 8.9 32 161-192 2-35 (187)
284 cd03216 ABC_Carb_Monos_I This 98.2 1.8E-05 4E-10 63.8 10.1 99 157-257 25-140 (163)
285 COG1136 SalX ABC-type antimicr 98.2 2.7E-05 5.9E-10 65.3 11.3 59 214-278 156-217 (226)
286 COG1618 Predicted nucleotide k 98.2 4.8E-05 1E-09 59.6 11.6 24 159-182 6-29 (179)
287 PF13207 AAA_17: AAA domain; P 98.2 2.1E-06 4.5E-11 65.5 4.0 31 161-192 2-32 (121)
288 PRK14722 flhF flagellar biosyn 98.1 2.3E-05 5E-10 71.0 11.1 103 159-265 138-265 (374)
289 cd03222 ABC_RNaseL_inhibitor T 98.1 2.2E-05 4.7E-10 64.0 9.9 97 159-255 26-129 (177)
290 COG1116 TauB ABC-type nitrate/ 98.1 1.3E-05 2.9E-10 67.4 8.5 23 160-182 31-53 (248)
291 PF06309 Torsin: Torsin; Inte 98.1 2E-05 4.4E-10 59.5 8.7 50 126-182 26-77 (127)
292 COG3854 SpoIIIAA ncharacterize 98.1 2.6E-05 5.6E-10 64.6 9.7 92 158-256 137-250 (308)
293 PRK13949 shikimate kinase; Pro 98.1 1.9E-05 4.2E-10 64.0 8.7 32 159-191 2-33 (169)
294 PRK04296 thymidine kinase; Pro 98.1 5.2E-05 1.1E-09 62.8 11.1 31 160-190 4-36 (190)
295 PRK08533 flagellar accessory p 98.1 3.6E-05 7.9E-10 65.7 10.1 35 158-192 24-60 (230)
296 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 5.8E-05 1.2E-09 59.5 10.4 85 157-243 25-116 (144)
297 PF13604 AAA_30: AAA domain; P 98.0 3.8E-05 8.2E-10 63.9 9.8 99 159-258 19-132 (196)
298 cd03238 ABC_UvrA The excision 98.0 8.6E-05 1.9E-09 60.5 11.6 113 158-278 21-163 (176)
299 KOG2383|consensus 98.0 3.5E-05 7.7E-10 68.8 9.9 28 155-182 111-138 (467)
300 cd03214 ABC_Iron-Siderophores_ 98.0 3.2E-05 6.9E-10 63.5 9.2 101 157-258 24-157 (180)
301 PRK04841 transcriptional regul 98.0 0.00017 3.7E-09 74.1 16.3 149 159-317 33-221 (903)
302 cd00267 ABC_ATPase ABC (ATP-bi 98.0 3.7E-05 8.1E-10 61.5 9.2 96 158-257 25-138 (157)
303 KOG1051|consensus 98.0 5.8E-05 1.3E-09 74.8 11.6 157 123-294 184-365 (898)
304 PF13671 AAA_33: AAA domain; P 98.0 2E-05 4.3E-10 61.9 6.8 33 161-196 2-34 (143)
305 COG1102 Cmk Cytidylate kinase 98.0 2.4E-05 5.3E-10 61.2 6.7 28 161-189 3-30 (179)
306 PRK00131 aroK shikimate kinase 98.0 8.9E-06 1.9E-10 66.2 4.5 32 158-190 4-35 (175)
307 COG5271 MDN1 AAA ATPase contai 98.0 4.2E-05 9E-10 78.9 9.7 133 160-295 890-1050(4600)
308 COG5271 MDN1 AAA ATPase contai 98.0 5.3E-05 1.2E-09 78.2 10.4 131 159-293 1544-1704(4600)
309 TIGR02237 recomb_radB DNA repa 98.0 3.1E-05 6.6E-10 65.2 7.8 41 154-194 7-50 (209)
310 PF14516 AAA_35: AAA-like doma 98.0 0.00027 5.8E-09 63.8 14.2 154 157-315 30-233 (331)
311 PRK06762 hypothetical protein; 97.9 8.6E-05 1.9E-09 60.0 9.9 37 159-196 3-39 (166)
312 PRK14974 cell division protein 97.9 0.00023 5E-09 63.9 13.4 36 158-193 140-177 (336)
313 PRK10536 hypothetical protein; 97.9 0.0001 2.2E-09 63.1 10.5 97 160-258 76-214 (262)
314 TIGR01618 phage_P_loop phage n 97.9 4.3E-05 9.2E-10 64.3 8.2 22 159-180 13-34 (220)
315 KOG0066|consensus 97.9 0.00034 7.4E-09 63.4 14.2 24 159-182 614-637 (807)
316 TIGR02858 spore_III_AA stage I 97.9 4.1E-05 8.9E-10 66.6 8.3 94 159-258 112-228 (270)
317 COG1126 GlnQ ABC-type polar am 97.9 6.7E-05 1.4E-09 61.8 8.9 43 212-255 148-193 (240)
318 COG4619 ABC-type uncharacteriz 97.9 4.8E-05 1E-09 60.1 7.7 26 157-182 28-53 (223)
319 cd03228 ABCC_MRP_Like The MRP 97.9 0.00013 2.9E-09 59.2 10.8 101 157-260 27-156 (171)
320 PF00448 SRP54: SRP54-type pro 97.9 4.2E-05 9.1E-10 63.5 7.8 104 159-263 2-131 (196)
321 PRK11889 flhF flagellar biosyn 97.9 0.00024 5.2E-09 64.4 13.0 50 130-182 216-265 (436)
322 cd03283 ABC_MutS-like MutS-lik 97.9 7.8E-05 1.7E-09 62.1 9.3 24 159-182 26-49 (199)
323 PF04665 Pox_A32: Poxvirus A32 97.9 0.00019 4E-09 61.1 11.5 130 159-292 14-170 (241)
324 KOG3347|consensus 97.9 1.1E-05 2.4E-10 62.0 3.6 32 159-191 8-39 (176)
325 cd03247 ABCC_cytochrome_bd The 97.9 0.00017 3.7E-09 59.0 11.0 99 157-258 27-156 (178)
326 PRK00771 signal recognition pa 97.9 0.00025 5.5E-09 65.9 13.3 37 157-193 94-132 (437)
327 cd01131 PilT Pilus retraction 97.9 5.5E-05 1.2E-09 63.1 8.1 67 160-226 3-82 (198)
328 cd01129 PulE-GspE PulE/GspE Th 97.9 0.00011 2.5E-09 63.9 10.2 95 122-230 57-160 (264)
329 COG1120 FepC ABC-type cobalami 97.9 8.1E-05 1.8E-09 63.7 8.9 24 159-182 29-52 (258)
330 PF10443 RNA12: RNA12 protein; 97.9 0.0013 2.7E-08 60.1 16.9 76 218-295 149-232 (431)
331 PRK14730 coaE dephospho-CoA ki 97.9 4.6E-05 1E-09 63.3 7.1 123 160-290 3-146 (195)
332 cd03246 ABCC_Protease_Secretio 97.9 0.00018 3.9E-09 58.6 10.6 98 159-258 29-155 (173)
333 cd03230 ABC_DR_subfamily_A Thi 97.9 0.0001 2.2E-09 60.1 9.0 98 158-257 26-153 (173)
334 COG3842 PotA ABC-type spermidi 97.9 4.2E-05 9E-10 68.5 7.2 22 161-182 34-55 (352)
335 PF01583 APS_kinase: Adenylyls 97.9 8.9E-05 1.9E-09 58.7 8.2 39 160-198 4-44 (156)
336 PRK13947 shikimate kinase; Pro 97.9 1.7E-05 3.6E-10 64.5 4.3 31 160-191 3-33 (171)
337 PRK06067 flagellar accessory p 97.9 0.00017 3.6E-09 61.8 10.6 38 155-192 21-61 (234)
338 cd00046 DEXDc DEAD-like helica 97.9 0.00011 2.5E-09 56.7 8.9 23 160-182 2-24 (144)
339 COG4178 ABC-type uncharacteriz 97.9 0.0001 2.2E-09 70.2 9.9 47 210-259 525-574 (604)
340 PRK13764 ATPase; Provisional 97.9 0.00011 2.4E-09 70.6 10.2 67 159-226 258-332 (602)
341 TIGR00064 ftsY signal recognit 97.9 0.00048 1E-08 60.3 13.5 37 157-193 71-109 (272)
342 PRK03839 putative kinase; Prov 97.8 1.6E-05 3.4E-10 65.3 4.0 31 160-191 2-32 (180)
343 COG0563 Adk Adenylate kinase a 97.8 9.1E-05 2E-09 60.4 8.3 34 160-196 2-35 (178)
344 cd02022 DPCK Dephospho-coenzym 97.8 7.2E-05 1.6E-09 61.3 7.7 34 161-198 2-35 (179)
345 PRK05703 flhF flagellar biosyn 97.8 0.00025 5.4E-09 66.0 11.9 104 159-264 222-349 (424)
346 cd03243 ABC_MutS_homologs The 97.8 0.00018 4E-09 60.1 10.1 22 159-180 30-51 (202)
347 COG3284 AcoR Transcriptional a 97.8 7.6E-05 1.7E-09 70.5 8.4 165 160-328 338-538 (606)
348 COG3839 MalK ABC-type sugar tr 97.8 7.4E-05 1.6E-09 66.6 7.9 23 160-182 31-53 (338)
349 PF13191 AAA_16: AAA ATPase do 97.8 2.4E-05 5.1E-10 64.3 4.6 60 127-195 2-63 (185)
350 COG4088 Predicted nucleotide k 97.8 0.00014 3E-09 59.4 8.7 23 160-182 3-25 (261)
351 COG2884 FtsE Predicted ATPase 97.8 0.00024 5.3E-09 57.3 9.9 42 213-256 150-194 (223)
352 PRK00625 shikimate kinase; Pro 97.8 2.1E-05 4.6E-10 63.8 4.0 31 160-191 2-32 (173)
353 PRK10416 signal recognition pa 97.8 0.00055 1.2E-08 61.2 13.3 26 157-182 113-138 (318)
354 cd00464 SK Shikimate kinase (S 97.8 2.5E-05 5.4E-10 62.2 4.2 31 160-191 1-31 (154)
355 cd00227 CPT Chloramphenicol (C 97.8 2.2E-05 4.8E-10 64.1 3.9 36 159-195 3-38 (175)
356 PRK08233 hypothetical protein; 97.8 0.00027 5.8E-09 57.9 10.4 33 160-192 5-37 (182)
357 PF08303 tRNA_lig_kinase: tRNA 97.8 0.00083 1.8E-08 53.1 12.3 127 164-296 5-147 (168)
358 COG1373 Predicted ATPase (AAA+ 97.8 0.00045 9.7E-09 63.9 12.8 129 160-296 39-184 (398)
359 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 0.00018 3.9E-09 61.4 9.3 37 210-246 149-188 (254)
360 TIGR01351 adk adenylate kinase 97.8 0.00013 2.8E-09 61.5 8.4 33 161-196 2-34 (210)
361 cd03229 ABC_Class3 This class 97.8 0.00024 5.2E-09 58.1 9.8 97 159-255 27-158 (178)
362 cd03223 ABCD_peroxisomal_ALDP 97.8 0.00021 4.6E-09 57.8 9.3 87 157-243 26-137 (166)
363 PTZ00088 adenylate kinase 1; P 97.8 0.0002 4.4E-09 60.9 9.5 34 160-196 8-41 (229)
364 PRK12724 flagellar biosynthesi 97.8 0.00068 1.5E-08 62.2 13.2 106 159-264 224-351 (432)
365 COG1124 DppF ABC-type dipeptid 97.7 0.00021 4.5E-09 60.0 9.0 39 213-251 154-195 (252)
366 TIGR01420 pilT_fam pilus retra 97.7 0.00011 2.4E-09 66.6 8.1 68 159-226 123-203 (343)
367 KOG2543|consensus 97.7 0.0011 2.3E-08 59.2 13.8 59 126-194 7-65 (438)
368 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 3.1E-05 6.7E-10 63.6 4.1 33 161-196 2-34 (183)
369 PRK14532 adenylate kinase; Pro 97.7 3.1E-05 6.7E-10 64.0 4.1 35 160-197 2-36 (188)
370 cd03239 ABC_SMC_head The struc 97.7 0.00055 1.2E-08 55.9 11.3 26 160-185 24-49 (178)
371 TIGR02688 conserved hypothetic 97.7 9.7E-05 2.1E-09 67.4 7.4 23 159-181 210-232 (449)
372 COG1119 ModF ABC-type molybden 97.7 0.00027 5.8E-09 59.4 9.4 60 209-268 180-242 (257)
373 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00034 7.5E-09 60.0 10.5 36 157-192 20-57 (237)
374 PRK00279 adk adenylate kinase; 97.7 0.00032 6.9E-09 59.3 10.2 34 160-196 2-35 (215)
375 TIGR02012 tigrfam_recA protein 97.7 0.00015 3.2E-09 64.6 8.2 73 154-226 50-141 (321)
376 PF00437 T2SE: Type II/IV secr 97.7 0.00014 3E-09 63.8 8.1 104 119-233 98-211 (270)
377 cd03233 ABC_PDR_domain1 The pl 97.7 0.00027 5.7E-09 59.1 9.5 45 213-257 131-178 (202)
378 PRK06217 hypothetical protein; 97.7 3.6E-05 7.9E-10 63.3 4.1 31 160-191 3-33 (183)
379 PRK13900 type IV secretion sys 97.7 0.0002 4.4E-09 64.3 9.1 71 159-230 161-246 (332)
380 PRK10867 signal recognition pa 97.7 0.00091 2E-08 62.1 13.6 70 157-226 99-191 (433)
381 cd02021 GntK Gluconate kinase 97.7 3.7E-05 7.9E-10 61.0 3.9 27 161-188 2-28 (150)
382 KOG0482|consensus 97.7 7.1E-05 1.5E-09 68.7 6.1 158 126-291 343-538 (721)
383 COG0529 CysC Adenylylsulfate k 97.7 0.00028 6.2E-09 56.2 8.7 38 159-196 24-63 (197)
384 COG2805 PilT Tfp pilus assembl 97.7 0.00024 5.1E-09 61.4 8.9 67 160-226 127-206 (353)
385 COG1122 CbiO ABC-type cobalt t 97.7 0.00012 2.7E-09 62.3 7.2 41 216-256 154-197 (235)
386 cd03280 ABC_MutS2 MutS2 homolo 97.7 0.00022 4.8E-09 59.5 8.7 21 159-179 29-49 (200)
387 cd02019 NK Nucleoside/nucleoti 97.7 6.5E-05 1.4E-09 51.0 4.4 31 161-191 2-32 (69)
388 cd00983 recA RecA is a bacter 97.7 0.00018 3.9E-09 64.0 8.3 73 154-226 50-141 (325)
389 PRK14531 adenylate kinase; Pro 97.7 4.5E-05 9.8E-10 62.7 4.3 35 159-196 3-37 (183)
390 PRK05800 cobU adenosylcobinami 97.7 0.00037 7.9E-09 56.5 9.5 33 160-193 3-35 (170)
391 PRK13948 shikimate kinase; Pro 97.7 5.3E-05 1.2E-09 62.0 4.6 34 157-191 9-42 (182)
392 TIGR01313 therm_gnt_kin carboh 97.7 3.9E-05 8.5E-10 61.8 3.8 32 161-195 1-32 (163)
393 PF01745 IPT: Isopentenyl tran 97.7 5.3E-05 1.2E-09 62.3 4.5 38 160-198 3-40 (233)
394 PF08298 AAA_PrkA: PrkA AAA do 97.7 0.00012 2.6E-09 65.1 6.9 61 125-191 61-121 (358)
395 cd03213 ABCG_EPDR ABCG transpo 97.7 0.00026 5.7E-09 58.7 8.7 98 157-255 34-168 (194)
396 PF07693 KAP_NTPase: KAP famil 97.7 0.0008 1.7E-08 60.6 12.5 109 217-327 171-319 (325)
397 PRK13695 putative NTPase; Prov 97.7 0.00082 1.8E-08 54.7 11.5 23 160-182 2-24 (174)
398 smart00534 MUTSac ATPase domai 97.7 0.00059 1.3E-08 56.2 10.7 20 161-180 2-21 (185)
399 cd03115 SRP The signal recogni 97.7 0.00082 1.8E-08 54.6 11.4 33 161-193 3-37 (173)
400 cd03269 ABC_putative_ATPase Th 97.7 0.00038 8.1E-09 58.6 9.7 26 157-182 25-50 (210)
401 COG3840 ThiQ ABC-type thiamine 97.7 0.00041 8.8E-09 55.7 9.0 38 217-255 147-187 (231)
402 PRK00081 coaE dephospho-CoA ki 97.7 0.00017 3.6E-09 59.9 7.3 35 160-198 4-38 (194)
403 TIGR03499 FlhF flagellar biosy 97.7 0.00041 9E-09 61.1 10.2 37 158-194 194-234 (282)
404 cd02020 CMPK Cytidine monophos 97.7 4.8E-05 1E-09 60.0 3.9 30 161-191 2-31 (147)
405 COG1118 CysA ABC-type sulfate/ 97.7 0.00025 5.3E-09 61.5 8.3 24 159-182 29-52 (345)
406 COG0703 AroK Shikimate kinase 97.6 4.6E-05 9.9E-10 61.0 3.6 32 159-191 3-34 (172)
407 COG1125 OpuBA ABC-type proline 97.6 0.00023 5.1E-09 60.1 7.8 23 160-182 29-51 (309)
408 COG1117 PstB ABC-type phosphat 97.6 0.00055 1.2E-08 56.4 9.8 22 160-181 35-56 (253)
409 KOG4509|consensus 97.6 0.00021 4.5E-09 56.3 7.0 72 4-75 12-83 (247)
410 PF02562 PhoH: PhoH-like prote 97.6 0.00022 4.7E-09 59.2 7.6 37 219-257 120-156 (205)
411 TIGR01425 SRP54_euk signal rec 97.6 0.0013 2.9E-08 60.7 13.5 36 158-193 100-137 (429)
412 COG2804 PulE Type II secretory 97.6 0.00047 1E-08 63.9 10.5 95 121-230 234-338 (500)
413 cd03232 ABC_PDR_domain2 The pl 97.6 0.00048 1E-08 57.1 9.8 24 158-181 33-56 (192)
414 PRK11432 fbpC ferric transport 97.6 0.00033 7.2E-09 63.6 9.5 24 159-182 33-56 (351)
415 PRK14530 adenylate kinase; Pro 97.6 6E-05 1.3E-09 63.7 4.4 28 160-188 5-32 (215)
416 PF06745 KaiC: KaiC; InterPro 97.6 0.00055 1.2E-08 58.3 10.3 73 154-226 14-123 (226)
417 cd01428 ADK Adenylate kinase ( 97.6 5.8E-05 1.2E-09 62.6 4.1 33 161-196 2-34 (194)
418 cd03217 ABC_FeS_Assembly ABC-t 97.6 0.00048 1E-08 57.5 9.7 99 157-257 25-162 (200)
419 cd03301 ABC_MalK_N The N-termi 97.6 0.00044 9.5E-09 58.3 9.5 26 157-182 25-50 (213)
420 cd01130 VirB11-like_ATPase Typ 97.6 0.00055 1.2E-08 56.4 9.8 71 159-230 26-111 (186)
421 PF13245 AAA_19: Part of AAA d 97.6 9.5E-05 2E-09 51.2 4.4 23 160-182 12-35 (76)
422 PRK11650 ugpC glycerol-3-phosp 97.6 0.00036 7.8E-09 63.6 9.4 24 159-182 31-54 (356)
423 PRK06547 hypothetical protein; 97.6 6.6E-05 1.4E-09 60.9 4.2 39 158-199 15-53 (172)
424 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 0.0004 8.7E-09 58.8 9.2 25 158-182 30-54 (218)
425 TIGR02533 type_II_gspE general 97.6 0.00039 8.4E-09 65.8 9.9 96 121-230 218-322 (486)
426 TIGR02525 plasmid_TraJ plasmid 97.6 0.0005 1.1E-08 62.6 10.2 69 160-229 151-235 (372)
427 PF12780 AAA_8: P-loop contain 97.6 0.0014 3E-08 57.1 12.5 89 125-226 8-97 (268)
428 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00054 1.2E-08 57.7 9.8 22 159-180 30-51 (213)
429 COG1131 CcmA ABC-type multidru 97.6 0.00047 1E-08 61.1 9.8 46 213-259 149-197 (293)
430 TIGR01448 recD_rel helicase, p 97.6 0.00044 9.6E-09 68.7 10.6 102 159-262 339-458 (720)
431 PRK09452 potA putrescine/sperm 97.6 0.00039 8.5E-09 63.7 9.5 24 159-182 41-64 (375)
432 cd01394 radB RadB. The archaea 97.6 0.00061 1.3E-08 57.6 10.1 35 159-193 20-56 (218)
433 PRK12726 flagellar biosynthesi 97.6 0.0015 3.3E-08 59.1 12.9 63 129-193 179-243 (407)
434 PRK13539 cytochrome c biogenes 97.6 0.00055 1.2E-08 57.4 9.6 25 158-182 28-52 (207)
435 TIGR02788 VirB11 P-type DNA tr 97.6 0.00041 9E-09 61.9 9.3 71 158-229 144-228 (308)
436 cd02024 NRK1 Nicotinamide ribo 97.6 0.00089 1.9E-08 55.0 10.5 28 161-188 2-29 (187)
437 cd03215 ABC_Carb_Monos_II This 97.6 0.00054 1.2E-08 56.3 9.3 25 158-182 26-50 (182)
438 PRK09361 radB DNA repair and r 97.6 0.00025 5.3E-09 60.4 7.5 40 154-193 18-60 (225)
439 TIGR02782 TrbB_P P-type conjug 97.6 0.00028 6.2E-09 62.5 8.1 71 159-230 133-215 (299)
440 TIGR03265 PhnT2 putative 2-ami 97.6 0.00043 9.2E-09 63.0 9.4 24 159-182 31-54 (353)
441 KOG0477|consensus 97.6 5.9E-05 1.3E-09 70.8 3.8 54 127-182 451-506 (854)
442 cd03227 ABC_Class2 ABC-type Cl 97.6 0.0005 1.1E-08 55.3 8.9 24 159-182 22-45 (162)
443 COG1855 ATPase (PilT family) [ 97.6 5.2E-05 1.1E-09 68.7 3.3 44 122-182 244-287 (604)
444 PRK05057 aroK shikimate kinase 97.6 8.4E-05 1.8E-09 60.4 4.3 33 159-192 5-37 (172)
445 cd03293 ABC_NrtD_SsuB_transpor 97.6 0.00054 1.2E-08 58.1 9.5 24 159-182 31-54 (220)
446 PRK11823 DNA repair protein Ra 97.6 0.00018 4E-09 67.4 7.1 70 157-226 79-164 (446)
447 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 0.00054 1.2E-08 58.8 9.5 26 157-182 26-51 (236)
448 COG1936 Predicted nucleotide k 97.6 6.1E-05 1.3E-09 59.8 3.2 30 160-191 2-31 (180)
449 PRK13538 cytochrome c biogenes 97.6 0.001 2.2E-08 55.7 10.8 25 158-182 27-51 (204)
450 PRK13541 cytochrome c biogenes 97.6 0.00084 1.8E-08 55.8 10.3 26 157-182 25-50 (195)
451 PRK10436 hypothetical protein; 97.6 0.00062 1.3E-08 63.9 10.3 92 122-226 195-295 (462)
452 PRK14527 adenylate kinase; Pro 97.6 0.00062 1.4E-08 56.3 9.4 35 159-196 7-41 (191)
453 PF06414 Zeta_toxin: Zeta toxi 97.6 0.00034 7.3E-09 58.4 7.8 42 158-199 15-56 (199)
454 COG2909 MalT ATP-dependent tra 97.6 0.0012 2.7E-08 64.5 12.4 150 159-317 38-229 (894)
455 cd01121 Sms Sms (bacterial rad 97.6 0.00024 5.1E-09 64.9 7.3 70 157-226 81-166 (372)
456 PRK03731 aroL shikimate kinase 97.6 9.6E-05 2.1E-09 60.0 4.4 32 159-191 3-34 (171)
457 PF08433 KTI12: Chromatin asso 97.5 0.00045 9.7E-09 60.2 8.7 84 160-244 3-97 (270)
458 cd03265 ABC_DrrA DrrA is the A 97.5 0.00069 1.5E-08 57.4 9.7 25 158-182 26-50 (220)
459 PRK14528 adenylate kinase; Pro 97.5 9.1E-05 2E-09 61.1 4.2 33 160-195 3-35 (186)
460 TIGR02768 TraA_Ti Ti-type conj 97.5 0.0004 8.6E-09 69.3 9.4 96 160-256 370-476 (744)
461 PRK13946 shikimate kinase; Pro 97.5 8.1E-05 1.8E-09 61.3 3.9 32 159-191 11-42 (184)
462 cd03226 ABC_cobalt_CbiO_domain 97.5 0.00069 1.5E-08 56.7 9.5 25 158-182 26-50 (205)
463 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00065 1.4E-08 57.6 9.5 26 157-182 30-55 (221)
464 PRK11607 potG putrescine trans 97.5 0.00058 1.3E-08 62.7 9.7 24 159-182 46-69 (377)
465 cd02027 APSK Adenosine 5'-phos 97.5 0.00045 9.8E-09 54.7 7.9 35 161-195 2-38 (149)
466 PRK06696 uridine kinase; Valid 97.5 0.0002 4.3E-09 60.9 6.2 38 159-196 23-62 (223)
467 cd03258 ABC_MetN_methionine_tr 97.5 0.00061 1.3E-08 58.3 9.3 26 157-182 30-55 (233)
468 cd00544 CobU Adenosylcobinamid 97.5 0.00076 1.6E-08 54.5 9.2 31 161-192 2-32 (169)
469 PF13238 AAA_18: AAA domain; P 97.5 6.9E-05 1.5E-09 57.5 3.0 22 161-182 1-22 (129)
470 PRK13833 conjugal transfer pro 97.5 0.00067 1.4E-08 60.5 9.6 71 159-230 145-226 (323)
471 PF05707 Zot: Zonular occluden 97.5 0.00023 5E-09 59.0 6.3 115 161-279 3-146 (193)
472 TIGR01360 aden_kin_iso1 adenyl 97.5 0.0001 2.2E-09 60.8 4.1 33 160-195 5-37 (188)
473 COG3172 NadR Predicted ATPase/ 97.5 0.0026 5.6E-08 49.9 11.4 67 159-226 9-86 (187)
474 PRK04328 hypothetical protein; 97.5 0.0011 2.4E-08 57.3 10.6 35 158-192 23-59 (249)
475 cd03259 ABC_Carb_Solutes_like 97.5 0.00076 1.6E-08 56.8 9.5 24 159-182 27-50 (213)
476 PRK11248 tauB taurine transpor 97.5 0.00076 1.6E-08 58.6 9.7 25 158-182 27-51 (255)
477 COG1127 Ttg2A ABC-type transpo 97.5 0.00069 1.5E-08 56.8 8.8 45 211-255 156-203 (263)
478 PRK02496 adk adenylate kinase; 97.5 9.6E-05 2.1E-09 60.8 3.9 28 160-188 3-30 (184)
479 TIGR00152 dephospho-CoA kinase 97.5 0.0005 1.1E-08 56.8 8.1 122 161-289 2-143 (188)
480 TIGR03410 urea_trans_UrtE urea 97.5 0.00076 1.6E-08 57.6 9.5 26 157-182 25-50 (230)
481 TIGR00959 ffh signal recogniti 97.5 0.0028 6.1E-08 58.9 13.7 69 158-226 99-190 (428)
482 PF10236 DAP3: Mitochondrial r 97.5 0.006 1.3E-07 54.5 15.4 47 273-320 258-307 (309)
483 PRK04040 adenylate kinase; Pro 97.5 0.00012 2.6E-09 60.4 4.3 36 159-195 3-38 (188)
484 cd03300 ABC_PotA_N PotA is an 97.5 0.0009 1.9E-08 57.2 9.9 26 157-182 25-50 (232)
485 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 0.0011 2.4E-08 56.4 10.3 26 157-182 47-72 (224)
486 COG1134 TagH ABC-type polysacc 97.5 0.0011 2.4E-08 55.8 9.9 24 159-182 54-77 (249)
487 PRK13894 conjugal transfer ATP 97.5 0.00073 1.6E-08 60.4 9.5 72 159-231 149-231 (319)
488 PRK09544 znuC high-affinity zi 97.5 0.00092 2E-08 57.9 9.9 26 157-182 29-54 (251)
489 cd03237 ABC_RNaseL_inhibitor_d 97.5 0.0006 1.3E-08 58.9 8.7 24 159-182 26-49 (246)
490 cd03292 ABC_FtsE_transporter F 97.5 0.00097 2.1E-08 56.2 9.9 26 157-182 26-51 (214)
491 PRK11629 lolD lipoprotein tran 97.5 0.00088 1.9E-08 57.3 9.6 24 159-182 36-59 (233)
492 PRK11000 maltose/maltodextrin 97.5 0.00067 1.5E-08 62.2 9.3 24 159-182 30-53 (369)
493 cd03268 ABC_BcrA_bacitracin_re 97.5 0.0011 2.3E-08 55.7 9.9 25 158-182 26-50 (208)
494 COG2274 SunT ABC-type bacterio 97.5 0.001 2.2E-08 65.6 10.9 59 212-278 621-682 (709)
495 TIGR02538 type_IV_pilB type IV 97.5 0.0008 1.7E-08 65.1 10.1 94 122-229 293-395 (564)
496 PRK13635 cbiO cobalt transport 97.5 0.00093 2E-08 58.8 9.7 24 159-182 34-57 (279)
497 TIGR00960 3a0501s02 Type II (G 97.5 0.0011 2.4E-08 56.0 9.9 25 158-182 29-53 (216)
498 TIGR01277 thiQ thiamine ABC tr 97.5 0.0011 2.4E-08 55.8 9.9 26 157-182 23-48 (213)
499 PTZ00202 tuzin; Provisional 97.5 0.0098 2.1E-07 54.8 16.1 62 122-193 259-320 (550)
500 PRK13808 adenylate kinase; Pro 97.5 0.00092 2E-08 59.7 9.6 34 160-196 2-35 (333)
No 1
>KOG0739|consensus
Probab=100.00 E-value=7.7e-74 Score=477.02 Aligned_cols=325 Identities=65% Similarity=1.050 Sum_probs=298.1
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKGKKQPVKD 82 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~~~~~~~~ 82 (330)
.++|||||+++|+..|+++||++|+.+|+.++++|...+++|....+.++.||.++.||++|+|+|+.++....+.+.++
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~~~~k~ 85 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEKGAGKK 85 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 58899999999999999999999999999999999999999987788999999999999999999999998876555443
Q ss_pred CCCc---ccCCCCCCC--CCCCCChhHHHHHHhhcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCC
Q psy3808 83 GESR---TKDDKKESD--EDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVP 157 (330)
Q Consensus 83 ~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (330)
+... ..+.++.+. +..+.+++.+++...|.+.|+.+.|+++|+||.|++.+++.|+++|++|+.+|++|.+.+.|
T Consensus 86 ~~~a~a~~~~~k~~ds~~eg~d~~pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P 165 (439)
T KOG0739|consen 86 GDEAVATVPKGKKKDSDGEGEDDEPEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP 165 (439)
T ss_pred CccccCCCCCCCCCCccccccCCChhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCc
Confidence 3322 122222222 22233478888999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-------- 229 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-------- 229 (330)
|++||||||||||||+||+++|.+. +.+|+.++.++++++|.|++++.++.+|+.|+.++|+|||||| +|
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA-nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDE-iDslcg~r~e 243 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDE-IDSLCGSRSE 243 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc-CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeeh-hhhhccCCCC
Confidence 9999999999999999999999999 6999999999999999999999999999999999999999999 44
Q ss_pred ------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHh
Q psy3808 230 ------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDEN 303 (330)
Q Consensus 230 ------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~ 303 (330)
+++...|+.+|+++..+.++|+|+++||.||.+|.+++|||.++|++|+|+...|..+|+..++..+..+++.|
T Consensus 244 nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d 323 (439)
T KOG0739|consen 244 NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQD 323 (439)
T ss_pred CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 304 LKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 304 ~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
+..|+++|+||||+||.-+|++|+|.
T Consensus 324 ~~eL~~kTeGySGsDisivVrDalme 349 (439)
T KOG0739|consen 324 FKELARKTEGYSGSDISIVVRDALME 349 (439)
T ss_pred HHHHHhhcCCCCcCceEEEehhhhhh
Confidence 99999999999999999999999885
No 2
>KOG0738|consensus
Probab=100.00 E-value=2.4e-50 Score=347.35 Aligned_cols=221 Identities=53% Similarity=0.891 Sum_probs=209.0
Q ss_pred HHHHhhcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC
Q psy3808 106 KMQANLEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS 185 (330)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~ 185 (330)
.+.+.++..+....|+++|+||+|+.++|+.|+++|++|+..|.+|++...||++||++||||||||+||+|+|.++ +.
T Consensus 193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc-~t 271 (491)
T KOG0738|consen 193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC-GT 271 (491)
T ss_pred HHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-cC
Confidence 45666788888899999999999999999999999999999999999999999999999999999999999999999 79
Q ss_pred cEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc---------------hhhHHHHHHHHhcCCCCCCc-
Q psy3808 186 TFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID---------------RGISNALFLLLSGVGNDMDG- 249 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~---------------~~~~~~l~~~l~~~~~~~~~- 249 (330)
+||.|+.+.+.++|.|++++.++-+|+.|+.++|++||||| +| +++...|+.+++++.....+
T Consensus 272 TFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDE-IDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 272 TFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDE-IDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred eEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhh-HHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999999999999999999999999999999 44 56788999999999887777
Q ss_pred --EEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcc
Q psy3808 250 --ILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFK 327 (330)
Q Consensus 250 --v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~ 327 (330)
|+|+++||.||++|.+|+|||.+.|++|+|+.+.|..+++..++.... .++.++..||+.++||||+||.++|++|.
T Consensus 351 k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nvCreAs 429 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNVCREAS 429 (491)
T ss_pred eeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988764 47889999999999999999999999998
Q ss_pred cc
Q psy3808 328 VD 329 (330)
Q Consensus 328 ~~ 329 (330)
|+
T Consensus 430 m~ 431 (491)
T KOG0738|consen 430 MM 431 (491)
T ss_pred HH
Confidence 85
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-48 Score=332.46 Aligned_cols=209 Identities=44% Similarity=0.731 Sum_probs=191.7
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
+.+.|.++++||+|+++++++|++.|.+|+.+|.+|...+. ||+|||||||||||||+||+|+|+.. +++|+.+..++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-~AtFIrvvgSE 220 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-DATFIRVVGSE 220 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-CceEEEeccHH
Confidence 45789999999999999999999999999999999998775 88999999999999999999999999 79999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHH---HHHHHHhcCCCCCCcEEEEecCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISN---ALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~---~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+..+|+|+..+.++.+|..|+.++|||||||| +| +.++. .|+..|+++.. .++|-||+|||
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDE-IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~ATN 298 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDE-IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-RGNVKVIMATN 298 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEec-hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-CCCeEEEEecC
Confidence 99999999999999999999999999999999 33 34444 45555666655 37899999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+++.|||+|+| ||++.|.||+|+...|.+||+.+.++.... ++.+|+.||+.++|+||+||+++|.+|-|
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm 370 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGM 370 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhH
Confidence 99999999999 999999999999999999999999988753 77999999999999999999999999976
No 4
>KOG0730|consensus
Probab=100.00 E-value=1.2e-45 Score=337.93 Aligned_cols=212 Identities=42% Similarity=0.717 Sum_probs=197.7
Q ss_pred ccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 113 GAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
..+..+.|+++|+||+|++++|++|++.|.+|+.++..|...+ .|++|||||||||||||++|+++|++. +.+|+.+.
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvk 500 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVK 500 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-cCCeeecc
Confidence 3445788999999999999999999999999999999999887 688999999999999999999999999 89999999
Q ss_pred ccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 192 SSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+.+++++|+|++++.++.+|+.|++.+|||||+|| +| .++.+.+++.|++++.. .+|+||++||
T Consensus 501 gpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDE-iDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~-k~V~ViAATN 578 (693)
T KOG0730|consen 501 GPELFSKYVGESERAIREVFRKARQVAPCIIFFDE-IDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL-KNVLVIAATN 578 (693)
T ss_pred CHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhh-HHhHhhccCCCccchHHHHHHHHHHHccccccc-CcEEEEeccC
Confidence 99999999999999999999999999999999999 44 45667888999998776 6899999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+|+.+|++++| ||++.|+||+||.+.|.+||+..+++.+.. ++.++..||..|+||||+||.++|++|.+
T Consensus 579 Rpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 579 RPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred ChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999998764 56899999999999999999999999975
No 5
>KOG0733|consensus
Probab=100.00 E-value=7.1e-43 Score=315.97 Aligned_cols=212 Identities=40% Similarity=0.641 Sum_probs=194.0
Q ss_pred ccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 113 GAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.++....++++|.||+|++....+|.+.+.. +.+|..|...+ .|++|+|||||||||||+||+++|+++ +.||+.++
T Consensus 178 ~~~~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vPf~~is 255 (802)
T KOG0733|consen 178 EGLEFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVPFLSIS 255 (802)
T ss_pred cccCCCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCceEeec
Confidence 3444556689999999999999999999888 78888877665 588999999999999999999999999 89999999
Q ss_pred ccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCC---CCcEEEEe
Q psy3808 192 SSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGND---MDGILVLG 254 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~---~~~v~vi~ 254 (330)
+.++++.+.|++++.++.+|+.|....|||+|||| +| +++...|+..|+++... .++|+|||
T Consensus 256 ApeivSGvSGESEkkiRelF~~A~~~aPcivFiDe-IDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 256 APEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDE-IDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred chhhhcccCcccHHHHHHHHHHHhccCCeEEEeec-ccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 99999999999999999999999999999999999 44 66778899999988765 46799999
Q ss_pred cCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 255 ATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 255 ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|||+|+.+||+|+| ||++.|.+..|+..+|.+|++.++++..+. .+.++..||+.|.||+|+||.+||.+|.+
T Consensus 335 ATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGADL~AL~~~Aa~ 409 (802)
T KOG0733|consen 335 ATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGADLMALCREAAF 409 (802)
T ss_pred cCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccchhHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999988765 58899999999999999999999999864
No 6
>KOG0733|consensus
Probab=100.00 E-value=2.1e-43 Score=319.46 Aligned_cols=211 Identities=41% Similarity=0.719 Sum_probs=194.7
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.....|.++|+||+|+++++.+|..++..|+.+|+.|...+. ++.|||||||||||||.||+|+|++. +..|+.+...
T Consensus 501 GF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NFisVKGP 579 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-GANFISVKGP 579 (802)
T ss_pred cceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-cCceEeecCH
Confidence 335679999999999999999999999999999999987764 67899999999999999999999999 8999999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
+++++|+|+++..++.+|..|+...|||||+|| +| .++.+.|+..|+++..+ .+|.||++||+|
T Consensus 580 ELlNkYVGESErAVR~vFqRAR~saPCVIFFDE-iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R-~gV~viaATNRP 657 (802)
T KOG0733|consen 580 ELLNKYVGESERAVRQVFQRARASAPCVIFFDE-IDALVPRRSDEGSSVSSRVVNQLLTELDGLEER-RGVYVIAATNRP 657 (802)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecc-hhhcCcccCCCCchhHHHHHHHHHHHhcccccc-cceEEEeecCCC
Confidence 999999999999999999999999999999999 44 56778999999998766 689999999999
Q ss_pred CCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCC-ChHhHHHHHHHcC--CCCHHHHHHHHhhccc
Q psy3808 260 WVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTI-SDENLKELAKRTE--GYSGADISTLERNFKV 328 (330)
Q Consensus 260 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~-~~~~~~~la~~~~--g~~~~di~~l~~~a~~ 328 (330)
+.+||+++| ||++.+++++|+.++|..|++..++..+..+ ++.+++.||+.+. ||||+||..||++|.+
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi 731 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASI 731 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 999999999 9999999999999999999999998554443 5689999999988 9999999999999875
No 7
>KOG0737|consensus
Probab=100.00 E-value=1.8e-41 Score=292.19 Aligned_cols=214 Identities=45% Similarity=0.739 Sum_probs=194.4
Q ss_pred cccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC--CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 112 EGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR--VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 112 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
...+....-.++|+|++|++.+++.+++.|.+|+++|.+|..++ .|++||||+||||||||++|+++|++. +..|+.
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fIn 157 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-GANFIN 157 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-CCCcce
Confidence 34444455679999999999999999999999999999996543 477999999999999999999999999 899999
Q ss_pred ecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCC-cEEEEe
Q psy3808 190 VSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMD-GILVLG 254 (330)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~-~v~vi~ 254 (330)
++++.++++|.|+.++.++.+|..|...+|+|||||| ++ ..+.+.|....+++..+.. +|+|+|
T Consensus 158 v~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDE-vds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 158 VSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDE-VDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred eeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhh-HHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 9999999999999999999999999999999999999 44 2345678888888876544 799999
Q ss_pred cCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 255 ATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 255 ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|||+|.++|.+++||++..++++.|+..+|..|++.++...... ++.|+..+|..|.||||+||.++|+.|++
T Consensus 237 ATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred CCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999998765 78999999999999999999999999976
No 8
>KOG0734|consensus
Probab=100.00 E-value=1.1e-40 Score=297.72 Aligned_cols=204 Identities=38% Similarity=0.613 Sum_probs=183.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcccc
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWL 200 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 200 (330)
+++|+|+.|.+++|++|++.|.+.......-..++.-|+||||+||||||||+||+|+|++. +.||+..+.+++...|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CCCeEeccccchhhhhh
Confidence 78899999999999999997766544333334456667999999999999999999999999 89999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHH
Q psy3808 201 GESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAI 266 (330)
Q Consensus 201 ~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l 266 (330)
|...+.++.+|..|+..+|||||||| +| +...+.++..|+++..+ .+|+||++||.|+.+|++|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDE-iDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN-eGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDE-IDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN-EGIIVIGATNFPEALDKAL 456 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEec-hhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC-CceEEEeccCChhhhhHHh
Confidence 99999999999999999999999999 55 33456777788888765 6899999999999999999
Q ss_pred Hh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 267 RR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 267 ~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.| ||++.|.+|.||...|.+|++.++.+.... .+.|...||+-|.||+|+||.++++.|++
T Consensus 457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 457 TRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred cCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 99 999999999999999999999999887643 67899999999999999999999999976
No 9
>KOG0740|consensus
Probab=100.00 E-value=3.2e-40 Score=294.50 Aligned_cols=217 Identities=52% Similarity=0.860 Sum_probs=197.0
Q ss_pred hcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 111 LEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
+.+.|....+.+.|+|+.|++.+++.+.+.+++|...+.+|.+...|.+++||.||||+|||+|++++|.++ +..|+.+
T Consensus 139 i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~-~atff~i 217 (428)
T KOG0740|consen 139 IRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES-GATFFNI 217 (428)
T ss_pred HHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-cceEeec
Confidence 344455667889999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred cccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCC-CCCCcEEEEec
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVG-NDMDGILVLGA 255 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~-~~~~~v~vi~t 255 (330)
+++++.++|+|+.++.++.+|..|+..+|+|||||| +| +.....++..+.+.. ...++|+||||
T Consensus 218 SassLtsK~~Ge~eK~vralf~vAr~~qPsvifidE-idslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 218 SASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDE-IDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred cHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEech-hHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 999999999999999999999999999999999999 44 233444555544443 34568999999
Q ss_pred CCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 256 TNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 256 tn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
||.||.+|.+++|||.+++++|+|++++|..+|..++.+.+..+.+.++..|++.|+||+++||.++|++|+|.
T Consensus 297 TN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~ 370 (428)
T KOG0740|consen 297 TNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMG 370 (428)
T ss_pred CCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999874
No 10
>KOG0736|consensus
Probab=100.00 E-value=6.1e-40 Score=303.77 Aligned_cols=212 Identities=38% Similarity=0.651 Sum_probs=194.2
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
...+.|+++|+||+|++++|..|.+.+.+|+.++++|..+..+..|||||||||||||.+|+|+|.++ ...|+.+...+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-sL~FlSVKGPE 740 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPE 740 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-eeeEEeecCHH
Confidence 34678999999999999999999999999999999999888887899999999999999999999999 68999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc----------------hhhHHHHHHHHhcCCC-CCCcEEEEecCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERID----------------RGISNALFLLLSGVGN-DMDGILVLGATN 257 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~----------------~~~~~~l~~~l~~~~~-~~~~v~vi~ttn 257 (330)
+.+.|+|+++.+++.+|+.|+..+|||||+|| +| +++...++..++++.. ....|+||||||
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~PCVIFFDE-LDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAAPCVIFFDE-LDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccCCeEEEecc-ccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 99999999999999999999999999999999 44 5567789999999987 567899999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCC-HHHHHHHHHHHhcCCCCCCChHhHHHHHHHc-CCCCHHHHHHHHhhcccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPE-LNARLFMFRHHLGNTRNTISDENLKELAKRT-EGYSGADISTLERNFKVD 329 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~-~~~r~~il~~~l~~~~~~~~~~~~~~la~~~-~g~~~~di~~l~~~a~~~ 329 (330)
+|+.+||+|+| ||++.+++.+++ .+.+..+++...++.... ++.++..+|+.. ..|||+|+-++|.+|-++
T Consensus 820 RPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~ 894 (953)
T KOG0736|consen 820 RPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLA 894 (953)
T ss_pred CccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHH
Confidence 99999999999 999999998875 667889999998887754 778999999887 579999999999999764
No 11
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.9e-38 Score=257.33 Aligned_cols=203 Identities=34% Similarity=0.549 Sum_probs=177.9
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
..+.++|+|++|++++|+...-. ...+..|..|..+. |++||||||||||||++|+++|++. ..|++.+.+.++.+
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli-~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~-kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLI-MEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEA-KVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHH-HHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhccc-CCceEEechHHHHH
Confidence 35678999999999999986643 34456676666554 4799999999999999999999999 79999999999999
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeCCcc---------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDERID---------------RGISNALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~---------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
.++|+....++.+++.|+..+|||+|||| +| ..+.++|++.++++..+ .+|+.|++||+|+.+
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE-~DAiaLdRryQelRGDVsEiVNALLTelDgi~en-eGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDE-LDAIALDRRYQELRGDVSEIVNALLTELDGIKEN-EGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehh-hhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC-CceEEEeecCChhhc
Confidence 99999999999999999999999999999 44 34568899999998854 789999999999999
Q ss_pred CHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH-Hhhcc
Q psy3808 263 DAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL-ERNFK 327 (330)
Q Consensus 263 ~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l-~~~a~ 327 (330)
|+++++||...|.|.+|+.++|.+|++.+++..+..++ .++..++..|.|+||+||..- .+.|+
T Consensus 268 D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~-~~~~~~~~~t~g~SgRdikekvlK~aL 332 (368)
T COG1223 268 DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD-ADLRYLAAKTKGMSGRDIKEKVLKTAL 332 (368)
T ss_pred CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc-cCHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999987654 459999999999999999753 34443
No 12
>KOG0727|consensus
Probab=100.00 E-value=6.3e-38 Score=256.78 Aligned_cols=210 Identities=36% Similarity=0.637 Sum_probs=187.8
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
-+.|.+++.|++|++-+++++++++.+|+.+..++..-+. ||+|+|+|||||||||+||+++|+.. ...|+.+..+++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-~a~firvvgsef 225 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVVGSEF 225 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-chheeeeccHHH
Confidence 4678999999999999999999999999999999987664 88999999999999999999999998 789999999999
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeC-------------CcchhhHHH---HHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDE-------------RIDRGISNA---LFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe-------------~~~~~~~~~---l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
..+|.|+....++.+|..++.+.|+|||||| ..|+.++.. ++..++++... .+|-+|++||+.
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-~nvkvimatnra 304 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-TNVKVIMATNRA 304 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-cceEEEEecCcc
Confidence 9999999999999999999999999999999 223444444 44455555443 579999999999
Q ss_pred CCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 260 WVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 260 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
+.+||+++| |+++.|.||+||..+++.+|.....+... .++.|++.+...-+..|++||+++|++|-|.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l-s~~vdle~~v~rpdkis~adi~aicqeagm~ 375 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL-SDEVDLEDLVARPDKISGADINAICQEAGML 375 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC-CcccCHHHHhcCccccchhhHHHHHHHHhHH
Confidence 999999999 99999999999999999999999888765 3778999999999999999999999999763
No 13
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=276.30 Aligned_cols=210 Identities=37% Similarity=0.655 Sum_probs=184.3
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
..+.|.++|+||+|++.+++.+.+.+.+|+.++..|...+ .+++++||+||||||||++|+++|+.+ +.+|+.+.+++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l-~~~fi~i~~s~ 214 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT-TATFIRVVGSE 214 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHH
Confidence 4578999999999999999999999999999999988766 467899999999999999999999999 78999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--------------hhHHHH---HHHHhcCCCCCCcEEEEecCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR--------------GISNAL---FLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~--------------~~~~~l---~~~l~~~~~~~~~v~vi~ttn 257 (330)
+..+|.|+.+..++.+|..++...|+|||||| +|. .....+ +..++++.. ..+++||+|||
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDE-ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~-~~~v~VI~aTN 292 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDE-VDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ-TTNVKVIMATN 292 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEEC-HhhhccccccccCCccHHHHHHHHHHHHHhhccCC-CCCEEEEEecC
Confidence 99999999999999999999999999999999 442 122233 334444333 25789999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
+++.+||+++| ||+..|+|++|+..+|..||+.++.+.+.. .+.++..+|..|+||||+||.++|++|.+.
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~ 365 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQ 365 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999998 999999999999999999999999887643 667999999999999999999999999763
No 14
>KOG0735|consensus
Probab=100.00 E-value=1e-36 Score=280.10 Aligned_cols=206 Identities=38% Similarity=0.688 Sum_probs=190.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCC-cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccc
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPW-KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW 199 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 199 (330)
..+|+|++|+.++++.+.+.+.+|..+|.+|...+.+. .|||||||||||||+||.++|..+ +..|+.+.+.++.++|
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-NLRFISVKGPELLSKY 741 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-CeeEEEecCHHHHHHH
Confidence 48999999999999999999999999999999877643 589999999999999999999998 7899999999999999
Q ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeC-------------CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHH
Q psy3808 200 LGESEKLVKTLFELARAHRPSIIFIDE-------------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAI 266 (330)
Q Consensus 200 ~~~~~~~~~~~f~~a~~~~~~ii~iDe-------------~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l 266 (330)
.|.++..++.+|..|+..+|||+|+|| ....++.+.+++.+++.+. .++|.|+++|++|+.+||++
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg-l~GV~i~aaTsRpdliDpAL 820 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG-LDGVYILAATSRPDLIDPAL 820 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc-cceEEEEEecCCccccCHhh
Confidence 999999999999999999999999999 2336778899999999876 58999999999999999999
Q ss_pred Hh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 267 RR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 267 ~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
+| |+++.++.|.|+..+|.+|++.+...... .++.|++.+|.+|+||||+||..++-+|.+.
T Consensus 821 LRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~ 884 (952)
T KOG0735|consen 821 LRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYNAQLA 884 (952)
T ss_pred cCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHHHHHH
Confidence 99 99999999999999999999988766543 4788999999999999999999999998753
No 15
>KOG0731|consensus
Probab=100.00 E-value=8.7e-37 Score=287.83 Aligned_cols=206 Identities=44% Similarity=0.679 Sum_probs=186.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
...++|.||.|.+++|++|.+.|.+ +.+|..|...+ .+|+|+||+||||||||.||+|+|.+. +.||+.++.+++..
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gVPF~svSGSEFvE 382 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CCceeeechHHHHH
Confidence 3459999999999999999997765 66777776655 577999999999999999999999999 89999999999999
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeCCcc------------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDERID------------------RGISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~------------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
.++|.....++.+|..++..+|||||||| +| ....++++..++++... .+|+|+++||+|
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifide-ida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDE-IDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRP 460 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecc-cccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCc
Confidence 99999899999999999999999999999 43 23346777778888766 789999999999
Q ss_pred CCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 260 WVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 260 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+.+|++++| ||++.|+++.|+...|..|++.+++......++.++..+|.+|.||+|+||.++|++|.+
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~ 531 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAAL 531 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHH
Confidence 999999999 999999999999999999999999998876688899999999999999999999999875
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-36 Score=285.44 Aligned_cols=213 Identities=51% Similarity=0.819 Sum_probs=194.1
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccC-CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
.+....+.++|+|++|++.+++.+.+.+.+++.++..|.. +..+++++|||||||||||+||+++|.++ +.+|+.+..
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-~~~fi~v~~ 309 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-RSRFISVKG 309 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-CCeEEEeeC
Confidence 5667889999999999999999999999999999998876 34566899999999999999999999999 899999999
Q ss_pred cchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 193 SDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
+++.++|+|++++.++.+|..|+...|||||||| +| ....+.++..++++... .+|+||+|||+
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDE-iDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~-~~v~vi~aTN~ 387 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDE-IDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA-EGVLVIAATNR 387 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEc-hhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc-CceEEEecCCC
Confidence 9999999999999999999999999999999999 32 25677888888877665 67999999999
Q ss_pred CCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCC-CChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 259 PWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNT-ISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 259 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
||.+|++++| ||+..++||+||..+|.+||+.++...... ..+.++..+++.++||+|+||..+|++|.+.
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~ 461 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALE 461 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999876543 4678999999999999999999999999863
No 17
>KOG0652|consensus
Probab=100.00 E-value=2.1e-36 Score=248.93 Aligned_cols=213 Identities=35% Similarity=0.625 Sum_probs=189.6
Q ss_pred cccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 112 EGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 112 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
....+-+.|...++|++|++.++++|.+++++|+.++.-|...+. ||+|+|+|||||||||.+|+++|... +.+|+.+
T Consensus 158 kaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT-~aTFLKL 236 (424)
T KOG0652|consen 158 KAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT-NATFLKL 236 (424)
T ss_pred ceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc-cchHHHh
Confidence 344456789999999999999999999999999999999988764 88999999999999999999999998 7899999
Q ss_pred cccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHH---HHHHHHhcCCCCCCcEEEE
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISN---ALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~---~l~~~l~~~~~~~~~v~vi 253 (330)
....+...|.|...+.++..|..++..+|+|||||| +| +.++. .++.+++++... +.|-||
T Consensus 237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDE-lDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~-~~vKvi 314 (424)
T KOG0652|consen 237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDE-LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD-DRVKVI 314 (424)
T ss_pred cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEec-hhhhccccccccccccHHHHHHHHHHHHhhcCCCCc-cceEEE
Confidence 999999999999999999999999999999999999 33 33444 345556666554 679999
Q ss_pred ecCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 254 GATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
++||+.+-+||+++| |+++.|.||.|+.+.|.+|++.+.++... .++.+|..||+-|++|+|++.+++|-+|-|
T Consensus 315 AATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv-~~DvNfeELaRsTddFNGAQcKAVcVEAGM 390 (424)
T KOG0652|consen 315 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV-SDDVNFEELARSTDDFNGAQCKAVCVEAGM 390 (424)
T ss_pred eecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC-CCCCCHHHHhhcccccCchhheeeehhhhH
Confidence 999999999999998 99999999999999999999999888765 478999999999999999999999988754
No 18
>KOG0726|consensus
Probab=100.00 E-value=1.8e-36 Score=252.73 Aligned_cols=208 Identities=38% Similarity=0.642 Sum_probs=185.3
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.+.|.-++.|++|++.+++++++.+.+|+.+|.++...+. ||+||+|||+||||||.||+|+|+.. .++|+++..+++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-SATFlRvvGseL 255 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-SATFLRVVGSEL 255 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-chhhhhhhhHHH
Confidence 3457889999999999999999999999999999988764 88999999999999999999999998 689999999999
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHH---HHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISN---ALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~---~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
..+|.|+..+.++.+|+.|..++|+|+|||| +| +.++. .++.+++++..+ ..|-||++||+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDE-IdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr-gDvKvimATnr 333 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDE-IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-GDVKVIMATNR 333 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeeh-hhhhccccccCCCccHHHHHHHHHHHHHhccCcccc-CCeEEEEeccc
Confidence 9999999999999999999999999999999 44 23333 445555666554 56999999999
Q ss_pred CCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 259 PWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 259 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.+.+||+|.| |+++.|.||.||...+..||..+..+... ..+.+++.+.-.-+.+||+||+++|.+|-+
T Consensus 334 ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl-~~dVnle~li~~kddlSGAdIkAictEaGl 404 (440)
T KOG0726|consen 334 IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL-AEDVNLEELIMTKDDLSGADIKAICTEAGL 404 (440)
T ss_pred ccccCHhhcCCCccccccccCCCchhhhceeEEEeecccch-hccccHHHHhhcccccccccHHHHHHHHhH
Confidence 9999999999 99999999999999999999988777654 367889999988899999999999999864
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.1e-35 Score=289.53 Aligned_cols=210 Identities=45% Similarity=0.772 Sum_probs=188.1
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
..+.|.++|+|++|++.+++.|.+.+.+|+.++..+...+ .+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 444 ~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~-~~~fi~v~~~~ 522 (733)
T TIGR01243 444 LVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES-GANFIAVRGPE 522 (733)
T ss_pred hccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHH
Confidence 3456889999999999999999999999999999887755 466899999999999999999999999 79999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch---------------hhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR---------------GISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~---------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
+.++|+|+++..++.+|..++...|||||||| +|. ...+.++..++++... .+++||+|||.|
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~p~iifiDE-id~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aTn~~ 600 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAAPAIIFFDE-IDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL-SNVVVIAATNRP 600 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC-hhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC-CCEEEEEeCCCh
Confidence 99999999999999999999999999999999 442 2345677777776554 679999999999
Q ss_pred CCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 260 WVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 260 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
+.+|++++| ||+..+++|+|+.++|.+||+.++.+.+.. ++.++..||+.|+||||+||.++|++|.+.
T Consensus 601 ~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~ 671 (733)
T TIGR01243 601 DILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMA 671 (733)
T ss_pred hhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999998 999999999999999999999988776543 667899999999999999999999999763
No 20
>KOG0728|consensus
Probab=100.00 E-value=1.6e-35 Score=242.48 Aligned_cols=210 Identities=38% Similarity=0.633 Sum_probs=186.7
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.+.+.|..+++-++|++.+++++++.+.+|..+|.+|...+. .|+|+|||||||||||.||+++|+.. ...|+.++.+
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-~c~firvsgs 215 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGS 215 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-ceEEEEechH
Confidence 345678889999999999999999999999999999998875 46899999999999999999999998 6789999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHH---HHHHHHhcCCCCCCcEEEEecC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISN---ALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~---~l~~~l~~~~~~~~~v~vi~tt 256 (330)
++..+|.|+....++.+|-.|+.++|+|||+|| +| ..++. .++.++++++.. .++-+|.+|
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmde-idsigs~r~e~~~ggdsevqrtmlellnqldgfeat-knikvimat 293 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE-IDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT-KNIKVIMAT 293 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeec-ccccccccccCCCCccHHHHHHHHHHHHhccccccc-cceEEEEec
Confidence 999999999999999999999999999999999 43 33333 455556666554 679999999
Q ss_pred CCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 257 NIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 257 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+.+-+||+++| |+++.|.||+|+.+.|.+|++.+-++.+.. .-.++..+|+...|.||++++.+|.+|-|
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 999999999999 999999999999999999999887776542 45789999999999999999999999865
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.7e-35 Score=266.50 Aligned_cols=212 Identities=45% Similarity=0.692 Sum_probs=184.3
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
...+.|.+.|+||+|++++++.+.+.+.+|+.++..|...+ .+++++||+||||||||++|+++|+.+ +.+|+.++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~-~~~~i~v~~~ 199 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGS 199 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh-CCCEEEeehH
Confidence 34567899999999999999999999999999999887665 467899999999999999999999999 7899999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------------hHHHHHHHHhcCCC--CCCcEEEEecCC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------------ISNALFLLLSGVGN--DMDGILVLGATN 257 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------------~~~~l~~~l~~~~~--~~~~v~vi~ttn 257 (330)
++...|.|+.+..++.+|..++...|+|||||| +|.. ....+..++..+.. ...++.||+|||
T Consensus 200 ~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDE-iD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn 278 (389)
T PRK03992 200 ELVQKFIGEGARLVRELFELAREKAPSIIFIDE-IDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN 278 (389)
T ss_pred HHhHhhccchHHHHHHHHHHHHhcCCeEEEEec-hhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecC
Confidence 999999999999999999999999999999999 5532 22334444433321 235799999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
.++.+|++++| ||+..|.||+|+.++|.+||+.++...... .+.++..||..|+||+|+||.++|++|.+.
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~ 351 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMF 351 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999998 999999999999999999999998877543 457899999999999999999999999763
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-34 Score=268.66 Aligned_cols=210 Identities=29% Similarity=0.405 Sum_probs=172.8
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
+....+..+|+||+|++.+|+.+.+....... .....+..+++|+||+||||||||++|+++|+++ +.+++.++++.
T Consensus 218 le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~--~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~~~l~~~~ 294 (489)
T CHL00195 218 LEFYSVNEKISDIGGLDNLKDWLKKRSTSFSK--QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-QLPLLRLDVGK 294 (489)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHHhhH--HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEEEhHH
Confidence 33445788999999999999999875432211 1111233456899999999999999999999999 89999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhH------------HHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGIS------------NALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~------------~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
+.++|+|+++..++.+|..++...|||||||| +|.... ..+..++..+.....+++||+|||.++.+
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDE-ID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDE-IDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLL 373 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehh-hhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhC
Confidence 99999999999999999999999999999999 553211 12222333333344679999999999999
Q ss_pred CHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCC-CChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 263 DAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNT-ISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 263 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|++++| ||+..++++.|+.++|..||+.++.+.... ..+.++..||+.|+||||+||.++|.+|.+
T Consensus 374 d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 374 PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 999998 999999999999999999999999886533 357899999999999999999999999875
No 23
>KOG0729|consensus
Probab=100.00 E-value=1.7e-35 Score=244.28 Aligned_cols=210 Identities=38% Similarity=0.641 Sum_probs=185.9
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
+.+.|.++++|++|..++++.+++.+.+|+.+|+.|-..+. |++|+|+|||||||||.+|+++|+.. +..|+.+-.++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-dacfirvigse 246 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-DACFIRVIGSE 246 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-CceEEeehhHH
Confidence 45688999999999999999999999999999998877764 88999999999999999999999999 79999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeC-------Cc------chhhHHHH---HHHHhcCCCCCCcEEEEecCCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDE-------RI------DRGISNAL---FLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe-------~~------~~~~~~~l---~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
+..+|+|+....++.+|+.|+..+.||||+|| ++ |..++..+ ..+++++... .++-|+++||+
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr-gnikvlmatnr 325 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR-GNIKVLMATNR 325 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC-CCeEEEeecCC
Confidence 99999999999999999999999999999999 22 23344444 4445555443 67999999999
Q ss_pred CCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 259 PWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 259 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+.+||+|+| |+++.+.|.+||.+.|..||+.+.+..... .+.-|+-||+....-+|++|..+|.+|-|
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagm 396 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGM 396 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhH
Confidence 9999999999 999999999999999999999887776543 66789999999999999999999999865
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-34 Score=266.57 Aligned_cols=206 Identities=42% Similarity=0.644 Sum_probs=183.4
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
...++|.|+.|.+++++++.+.|...........-++..|+|++|+||||||||+||+++|.+. +.||+.+|.+++..-
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CCCceeccchhhhhh
Confidence 4679999999999999999998876554444444455677999999999999999999999999 899999999999999
Q ss_pred ccChhHHHHHHHHHHHHhcCCeEEEEeCCcc-----------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCC
Q psy3808 199 WLGESEKLVKTLFELARAHRPSIIFIDERID-----------------RGISNALFLLLSGVGNDMDGILVLGATNIPWV 261 (330)
Q Consensus 199 ~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~ 261 (330)
|+|-....++.+|..++.++|||||||| +| +...+.++..++++.. ..+|++|++||+|+-
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDE-iDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-~~gviviaaTNRpdV 300 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDE-IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-NEGVIVIAATNRPDV 300 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEeh-hhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-CCceEEEecCCCccc
Confidence 9999999999999999999999999999 44 2355677778888773 378999999999999
Q ss_pred cCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 262 LDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 262 l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+|++|+| ||++.|.++.||...|.+|++.++...+.. ++.++..+|+.|.||+|+|+.+++++|.+
T Consensus 301 lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal 368 (596)
T COG0465 301 LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAAL 368 (596)
T ss_pred chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHH
Confidence 9999999 999999999999999999999888887765 77899999999999999999999998875
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=260.10 Aligned_cols=209 Identities=38% Similarity=0.608 Sum_probs=181.9
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
+.+.|..+|+||+|++.+++.+.+.+.+|+.++.+|...+ .+++++||+||||||||++|+++|+++ +.+|+.++.++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el-~~~fi~V~~se 252 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET-SATFLRVVGSE 252 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh-CCCEEEEecch
Confidence 4567889999999999999999999999999999887665 466899999999999999999999999 68899999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------------hHHHHHH---HHhcCCCCCCcEEEEecCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------------ISNALFL---LLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------------~~~~l~~---~l~~~~~~~~~v~vi~ttn 257 (330)
+.+.|.|+....++.+|..+....|+|||||| +|.. ....+.. .++++.. ..++.||+|||
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDE-ID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~-~~~V~VI~ATN 330 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDE-IDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS-RGDVKVIMATN 330 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHH-HHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc-cCCeEEEEecC
Confidence 99999999999999999999999999999999 4421 2223333 3444332 35789999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.++.+|++++| ||+..|.|++|+..+|.+||+.++.+.... ++.++..++..++||||+||.++|++|.+
T Consensus 331 r~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGL 402 (438)
T ss_pred ChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999987 999999999999999999999998877543 56789999999999999999999999875
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.9e-33 Score=264.23 Aligned_cols=207 Identities=45% Similarity=0.716 Sum_probs=177.6
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccC-CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.+.|.++|+||+|++++++.+.+.+.. +..+..+.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCeeeccHHHH
Confidence 346789999999999999999987765 555555544 34566899999999999999999999999 799999999999
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----------------hhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----------------GISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
.+.+.|.....++.+|..++...|+|||||| +|. ...+.++..++++... .+++||+|||+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDE-id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~-~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDE-IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN-TGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEec-hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC-CCeEEEEecCC
Confidence 9999999999999999999999999999999 542 1223455555555433 57999999999
Q ss_pred CCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 259 PWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 259 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+.+|++++| ||+..+.+++|+.++|.+||+.++...+.. ++.++..+|..+.||+++||.++|++|.+
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~ 273 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAAL 273 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999876543 56789999999999999999999999864
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3e-32 Score=248.24 Aligned_cols=212 Identities=44% Similarity=0.716 Sum_probs=181.8
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
...+.|.+.|+|++|++++++.+.+.+..|+.++..+...+ .+++++||+||||||||++|+++|+.+ +.+|+.+.+.
T Consensus 112 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l-~~~~~~v~~~ 190 (364)
T TIGR01242 112 EVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGS 190 (364)
T ss_pred eeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC-CCCEEecchH
Confidence 34567899999999999999999999999999988887655 466899999999999999999999999 7889999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------------hHHHHHHHHhcCC--CCCCcEEEEecCC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------------ISNALFLLLSGVG--NDMDGILVLGATN 257 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------------~~~~l~~~l~~~~--~~~~~v~vi~ttn 257 (330)
++...|.|.....++.+|..++...|+|||||| +|.. ....+..++..+. ....++.||+|||
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDE-iD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn 269 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDE-IDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhh-hhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 999999999999999999999999999999999 5432 2234444443332 1235799999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
.++.+|+++++ ||+..+.|+.|+.++|..||+.++...... .+.++..+++.+.||+|+||.++|++|.+.
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~ 342 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMF 342 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999998 999999999999999999999988776532 456899999999999999999999999763
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=9.2e-32 Score=249.06 Aligned_cols=208 Identities=34% Similarity=0.610 Sum_probs=166.0
Q ss_pred hcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCC-----
Q psy3808 111 LEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANN----- 184 (330)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~----- 184 (330)
....+..+.|.++|+||+|++++++.+.+.+.+|+.++.+|...+ .|++++|||||||||||++|+++|+++..
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 345566778999999999999999999999999999999987655 46689999999999999999999999821
Q ss_pred ----CcEEEecccchhccccChhHHHHHHHHHHHHhc----CCeEEEEeCCcch---------------hhHHHHHHHHh
Q psy3808 185 ----STFFSVSSSDLVSKWLGESEKLVKTLFELARAH----RPSIIFIDERIDR---------------GISNALFLLLS 241 (330)
Q Consensus 185 ----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~----~~~ii~iDe~~~~---------------~~~~~l~~~l~ 241 (330)
..|+.++.+++.++|.|+++..++.+|..++.. .|+|||||| +|. ...+.|+..++
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDE-iD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDE-MDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEeh-hhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 236677788899999999999999999988764 699999999 542 12346777777
Q ss_pred cCCCCCCcEEEEecCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 242 GVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 242 ~~~~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
++... ++++||+|||+++.+||+++| ||+..|+|++|+.++|.+||+.++...- .++ .+ +..+.|++++++
T Consensus 327 gl~~~-~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l-~l~-~~----l~~~~g~~~a~~ 399 (512)
T TIGR03689 327 GVESL-DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL-PLD-AD----LAEFDGDREATA 399 (512)
T ss_pred ccccC-CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-Cch-HH----HHHhcCCCHHHH
Confidence 76543 679999999999999999999 9999999999999999999999986532 221 11 122345555555
Q ss_pred HHHHhhc
Q psy3808 320 STLERNF 326 (330)
Q Consensus 320 ~~l~~~a 326 (330)
.++|++|
T Consensus 400 ~al~~~a 406 (512)
T TIGR03689 400 AALIQRA 406 (512)
T ss_pred HHHHHHH
Confidence 5555544
No 29
>KOG0732|consensus
Probab=100.00 E-value=3e-32 Score=263.56 Aligned_cols=209 Identities=40% Similarity=0.697 Sum_probs=191.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHh----CCCcEEEeccc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVSSS 193 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~~~ 193 (330)
...+.|++++|++.++..|++.|.+|+.+|..|...+ .|++|+|||||||||||+.|+++|..+ ....|+.-..+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 3468999999999999999999999999999998766 478999999999999999999999988 23367778888
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
+..++|+|+.+..++.+|+.|+...|+|||+|| ++ ..+...++.+|+++... ..|+||||||+|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffde-IdGlapvrSskqEqih~SIvSTLLaLmdGldsR-gqVvvigATnRp 416 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDE-IDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR-GQVVVIGATNRP 416 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccc-cccccccccchHHHhhhhHHHHHHHhccCCCCC-CceEEEcccCCc
Confidence 999999999999999999999999999999999 44 45677899999998776 679999999999
Q ss_pred CCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 260 WVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 260 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
+.+||+++| ||++.++||+|+.+.|..|+.....+....+...-+..||+.+.||.|+||+++|.+|.+.
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALI 488 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhh
Confidence 999999999 9999999999999999999999988888778888999999999999999999999999875
No 30
>KOG0651|consensus
Probab=100.00 E-value=1.9e-32 Score=230.58 Aligned_cols=209 Identities=36% Similarity=0.589 Sum_probs=183.4
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCC-CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGK-RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.....++|+++.|...+..++.+.+.+|+..+.+|... -.||.+++||||||+|||.+|+++|..+ +..|+.++++.+
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m-g~nfl~v~ss~l 202 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM-GVNFLKVVSSAL 202 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc-CCceEEeeHhhh
Confidence 34557899999999999999999999999999999884 4588999999999999999999999999 789999999999
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeC-------------CcchhhHHHHHHHHhcCCC--CCCcEEEEecCCCCC
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDE-------------RIDRGISNALFLLLSGVGN--DMDGILVLGATNIPW 260 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe-------------~~~~~~~~~l~~~l~~~~~--~~~~v~vi~ttn~~~ 260 (330)
.++|.|++.+.++..|..|+.+.|||||+|| ..++.++..|..+++++.. ...+|-+|+|||+|+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 9999999999999999999999999999999 2235556667776665543 235799999999999
Q ss_pred CcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcc
Q psy3808 261 VLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFK 327 (330)
Q Consensus 261 ~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~ 327 (330)
.|+|+|+| |+++.+++|+|+...|..|++........ ..+.+.+.+.+.++||.|+|+.+.|++|-
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid~eaivK~~d~f~gad~rn~~tEag 350 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEIDDEAILKLVDGFNGADLRNVCTEAG 350 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccccHHHHHHHHhccChHHHhhhccccc
Confidence 99999999 99999999999999999998876554432 35567899999999999999999999885
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=99.98 E-value=2.2e-31 Score=254.33 Aligned_cols=205 Identities=40% Similarity=0.659 Sum_probs=172.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccC-CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
.+.++|+|++|++++++.+.+.+.. +..+..+.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-EVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeeeccHHHHHH
Confidence 4568999999999999999987755 444554443 33456899999999999999999999999 79999999999988
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
.+.|.....++.+|..++...|||||||| +|.. ..+.++..++++.. ..+++||++||.++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDE-ID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~-~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDE-IDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG-NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEec-chhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC-CCCeeEEEecCchH
Confidence 88888888899999999999999999999 6432 12233333444433 35799999999999
Q ss_pred CcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 261 VLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 261 ~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.+|++++| ||+..+.+++|+.++|.+||+.++..... .++.++..+|+.+.||+++||.++|++|++
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal 401 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAI 401 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 99999998 99999999999999999999999988543 467889999999999999999999999864
No 32
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=8.7e-31 Score=263.61 Aligned_cols=173 Identities=25% Similarity=0.287 Sum_probs=143.0
Q ss_pred CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccc----------cC----------------------
Q psy3808 154 KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW----------LG---------------------- 201 (330)
Q Consensus 154 ~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~----------~~---------------------- 201 (330)
+..|++||||+||||||||+||+++|+++ +.||+.++++++...+ .|
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 34577999999999999999999999999 8999999999988654 11
Q ss_pred ---------hh--HHHHHHHHHHHHhcCCeEEEEeCCcchhh--------HHHHHHHHhcCCC--CCCcEEEEecCCCCC
Q psy3808 202 ---------ES--EKLVKTLFELARAHRPSIIFIDERIDRGI--------SNALFLLLSGVGN--DMDGILVLGATNIPW 260 (330)
Q Consensus 202 ---------~~--~~~~~~~f~~a~~~~~~ii~iDe~~~~~~--------~~~l~~~l~~~~~--~~~~v~vi~ttn~~~ 260 (330)
.. ...++.+|+.|+.++|||||||| +|... .+.++..+++... ...+|+||||||+|+
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDE-IDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD 1783 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPN-IHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQ 1783 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEc-hhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcc
Confidence 11 22378899999999999999999 65322 4566677776532 346799999999999
Q ss_pred CcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCC--hHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 261 VLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTIS--DENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 261 ~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~--~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.+|||++| ||++.|.++.|+..+|.+++..++...+..+. ..++..+|+.|.||||+||+++|++|++
T Consensus 1784 ~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1784 KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999 99999999999999999998866544443333 3579999999999999999999999986
No 33
>KOG0730|consensus
Probab=99.97 E-value=2.2e-30 Score=237.95 Aligned_cols=205 Identities=39% Similarity=0.678 Sum_probs=188.7
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
+++. ++++|.......+.+.+.+|+..+..+...+ .+++++|+|||||||||.+++++|++. +..++.+++.+++++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-GAFLFLINGPELISK 257 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-CceeEecccHHHHHh
Confidence 5666 8999999999999999999999999987655 467999999999999999999999999 789999999999999
Q ss_pred ccChhHHHHHHHHHHHHhcC-CeEEEEeCCc-------------chhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCH
Q psy3808 199 WLGESEKLVKTLFELARAHR-PSIIFIDERI-------------DRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDA 264 (330)
Q Consensus 199 ~~~~~~~~~~~~f~~a~~~~-~~ii~iDe~~-------------~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~ 264 (330)
+.|+++..++..|+.+..++ |++||||| + +..+...++.+++++... .+++||++||+|..+|+
T Consensus 258 ~~gEte~~LR~~f~~a~k~~~psii~IdE-ld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~-~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQVPSIIFIDE-LDALCPKREGADDVESRVVSQLLTLLDGLKPD-AKVIVLAATNRPDSLDP 335 (693)
T ss_pred cccchHHHHHHHHHHHhccCCCeeEeHHh-HhhhCCcccccchHHHHHHHHHHHHHhhCcCc-CcEEEEEecCCccccCh
Confidence 99999999999999999999 99999999 3 345667889999988744 68999999999999999
Q ss_pred HHHh-ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 265 AIRR-RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 265 ~l~~-Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
+++| ||++.+.+..|+...|..|++.++...+.. ++.++..+|..+.||+|+|+.++|++|.+.
T Consensus 336 alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~ 400 (693)
T KOG0730|consen 336 ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQ 400 (693)
T ss_pred hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999998865 789999999999999999999999999764
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=7.1e-30 Score=222.93 Aligned_cols=167 Identities=20% Similarity=0.246 Sum_probs=137.9
Q ss_pred CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHh-----cCCeEEEEeCCc
Q psy3808 154 KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARA-----HRPSIIFIDERI 228 (330)
Q Consensus 154 ~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~-----~~~~ii~iDe~~ 228 (330)
+..+|++++||||||||||++|+++|+++ +.+++.+++.++.++|.|++++.++.+|..|.. .+|||||||| +
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~el-g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE-I 221 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKM-GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND-L 221 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHc-CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh-h
Confidence 34577999999999999999999999999 899999999999999999999999999999875 4699999999 4
Q ss_pred ch--------------hh-HHHHHHHHhcC-----------CCCCCcEEEEecCCCCCCcCHHHHh--ccccEEEecCCC
Q psy3808 229 DR--------------GI-SNALFLLLSGV-----------GNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPE 280 (330)
Q Consensus 229 ~~--------------~~-~~~l~~~l~~~-----------~~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~ 280 (330)
|. .+ ...|+.++++. .....+|+||+|||+|+.|+|+|+| ||++.+ ..|+
T Consensus 222 DA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd 299 (413)
T PLN00020 222 DAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPT 299 (413)
T ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCC
Confidence 41 11 24566666542 1234679999999999999999999 999864 5899
Q ss_pred HHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCC----CCHHHHHHHHhhc
Q psy3808 281 LNARLFMFRHHLGNTRNTISDENLKELAKRTEG----YSGADISTLERNF 326 (330)
Q Consensus 281 ~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g----~~~~di~~l~~~a 326 (330)
.++|.+|++.+++..+ ++..++..|+..+.| |.|+--..+..++
T Consensus 300 ~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 300 REDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred HHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999999998864 567899999999988 5565444444443
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=7.6e-30 Score=246.41 Aligned_cols=204 Identities=38% Similarity=0.607 Sum_probs=173.0
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCccccc-CCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFT-GKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
....|+|+.|.+..++.+.+.+.++.. +..+. .....+++++|+||||||||++++++++++ +.+|+.++++++...
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~-~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-~~~f~~is~~~~~~~ 224 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLRE-PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFVEM 224 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhC-HHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCEEEEehHHhHHh
Confidence 457899999999999999998866433 33332 233445789999999999999999999999 789999999999999
Q ss_pred ccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCCCCCcEEEEecCCCCCC
Q psy3808 199 WLGESEKLVKTLFELARAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGNDMDGILVLGATNIPWV 261 (330)
Q Consensus 199 ~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~ 261 (330)
+.+.....++.+|..++...|||||||| +|.. ..+.++..++++.. ..++++|+|||+|+.
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDE-iD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-~~~vivIaaTN~p~~ 302 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDE-IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDV 302 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehh-HhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC-CCCeeEEEecCChhh
Confidence 9999889999999999999999999999 5432 23445555666544 367999999999999
Q ss_pred cCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 262 LDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 262 l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+|++++| ||++.+.|++|+.++|.+||+.++.+.+.. .+.++..+|+.+.||||+||.++|++|.+
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 9999998 999999999999999999999999887643 56789999999999999999999999975
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2.7e-29 Score=247.53 Aligned_cols=206 Identities=43% Similarity=0.742 Sum_probs=183.2
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
.+.++|+||+|++.+++.+.+.+.+|+.++..+...+. +++++||+||||||||++|+++|+++ +.+++.+++.++.+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~-~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-GAYFISINGPEIMS 250 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh-CCeEEEEecHHHhc
Confidence 47899999999999999999999999999998877654 56899999999999999999999999 78999999999999
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--------------hhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDERIDR--------------GISNALFLLLSGVGNDMDGILVLGATNIPWVLD 263 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~--------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~ 263 (330)
.+.|..+..++.+|..+....|+|||||| ++. .....++.+++++... ..++||++||.++.+|
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDE-id~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDE-IDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeeh-hhhhcccccCCcchHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 99999999999999999999999999999 432 3455677777776543 5789999999999999
Q ss_pred HHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 264 AAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 264 ~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+++++ ||+..+.++.|+..+|.+||+.++..... .++.++..++..+.||+++||..+|+.|.+
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99998 99999999999999999999988776653 256789999999999999999999998875
No 37
>KOG0741|consensus
Probab=99.94 E-value=6.7e-27 Score=209.49 Aligned_cols=210 Identities=31% Similarity=0.511 Sum_probs=169.1
Q ss_pred ccCCCCCccc--ccchHHHHHHH-HHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 117 MEKPNVKWTD--VAGLEAAKEAL-KEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 117 ~~~~~~~~~~--~~G~~~~~~~l-~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
+..|...|.+ |+|++.--..+ +++.....-.|......+. ..+|+|||||||||||.+||.|...++...---++.
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3456777776 56776544444 4555444444555555554 347999999999999999999999996666666899
Q ss_pred cchhccccChhHHHHHHHHHHHHh--------cCCeEEEEeC---------------CcchhhHHHHHHHHhcCCCCCCc
Q psy3808 193 SDLVSKWLGESEKLVKTLFELARA--------HRPSIIFIDE---------------RIDRGISNALFLLLSGVGNDMDG 249 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~f~~a~~--------~~~~ii~iDe---------------~~~~~~~~~l~~~l~~~~~~~~~ 249 (330)
.++.++|+|+++.+++.+|..|.. ..-.||++|| ..+..+.+.|+.-++++..- .+
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL-NN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL-NN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh-hc
Confidence 999999999999999999987754 2345999999 23466778888888887654 67
Q ss_pred EEEEecCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCC---CCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 250 ILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNT---RNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 250 v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~---~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
++|||-||+++.+|.+|+| ||...+.+.+||...|.+|++.+..+. ...-++.|+..||..|-.|||++|+.+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 9999999999999999999 999999999999999999998766543 33347789999999999999999999999
Q ss_pred hcc
Q psy3808 325 NFK 327 (330)
Q Consensus 325 ~a~ 327 (330)
.|.
T Consensus 450 sA~ 452 (744)
T KOG0741|consen 450 SAQ 452 (744)
T ss_pred HHH
Confidence 874
No 38
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.91 E-value=4.4e-23 Score=179.59 Aligned_cols=201 Identities=16% Similarity=0.214 Sum_probs=147.0
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCC---CCcceEEECCCCCchHHHHHHHHHHh------CCCcEEEeccc
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV---PWKGILLFGPPGTGKSYLAKAVATEA------NNSTFFSVSSS 193 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~ill~GppGtGKT~la~~la~~~------~~~~~~~~~~~ 193 (330)
.+++++|++++|+.|.+.+.++.........+.. ...+++|+||||||||++|+++|+.+ ....++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 4678999999999999887665433221122211 22479999999999999999999875 23468889999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------hHHHHHHHHhcCCCCCCcEEEEecCCCC-----C
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------ISNALFLLLSGVGNDMDGILVLGATNIP-----W 260 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------~~~~l~~~l~~~~~~~~~v~vi~ttn~~-----~ 260 (330)
++.+.|.|++...+..+|..+. ++|||||| ++.. ....+..++..+......+++|+++... .
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE-~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~ 159 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDE-AYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFL 159 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEec-hhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHH
Confidence 9999999999888888887664 47999999 6532 1234444555444444556666665432 2
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHc-------C--CCCHHHHHHHHhhcc
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRT-------E--GYSGADISTLERNFK 327 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~-------~--g~~~~di~~l~~~a~ 327 (330)
.++|++.+||+..+.||.++.+++..|++.++...+..+++..+..|+... . .-+++.+.+++..|.
T Consensus 160 ~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~ 235 (261)
T TIGR02881 160 SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAI 235 (261)
T ss_pred hcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 367899999998999999999999999999998887778887777775432 1 124677878777664
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=4.1e-23 Score=180.89 Aligned_cols=195 Identities=19% Similarity=0.282 Sum_probs=143.6
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCC----CCCcceEEECCCCCchHHHHHHHHHHh------CCCcEEEecccch
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKR----VPWKGILLFGPPGTGKSYLAKAVATEA------NNSTFFSVSSSDL 195 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~ill~GppGtGKT~la~~la~~~------~~~~~~~~~~~~~ 195 (330)
+++|++++|+.+.+.+.+.. .+..+...+ .++.+++|+||||||||++|+++|..+ ...+++.++.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 69999999999998875522 222222222 123469999999999999999999876 2236899999999
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch------------hhHHHHHHHHhcCCCCCCcEEEEecCCCC----
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR------------GISNALFLLLSGVGNDMDGILVLGATNIP---- 259 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~---- 259 (330)
.+.|.|.++.....++..+. ++|||||| ++. .....+...++ ....+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE-~~~l~~~~~~~~~~~e~~~~L~~~me---~~~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDE-AYYLYKPDNERDYGSEAIEILLQVME---NQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEc-cchhccCCCccchHHHHHHHHHHHHh---cCCCCEEEEEeCCcHHHHH
Confidence 99999988777777777653 47999999 543 22334444444 334567888777542
Q ss_pred -CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHH------cCCCC-HHHHHHHHhhccc
Q psy3808 260 -WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKR------TEGYS-GADISTLERNFKV 328 (330)
Q Consensus 260 -~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~------~~g~~-~~di~~l~~~a~~ 328 (330)
..++|++.+||+..+.|++++.+++..|++.++.+.+..+++.....+... ...|. ++++.++++.|..
T Consensus 176 ~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 176 FYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 234699999999999999999999999999999988777777655554443 23455 7999999988764
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.90 E-value=4.1e-23 Score=169.63 Aligned_cols=191 Identities=20% Similarity=0.295 Sum_probs=128.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
...+.+|+|++|+++++..+.-.+.... ..+.+..+++||||||+||||||+.||+++ +..|..+++..+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~-------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~-~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAK-------KRGEALDHMLFYGPPGLGKTTLARIIANEL-GVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHH-------CTTS---EEEEESSTTSSHHHHHHHHHHHC-T--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHH-------hcCCCcceEEEECCCccchhHHHHHHHhcc-CCCeEeccchhhhh
Confidence 3456799999999999999876653221 112334589999999999999999999999 78888777654321
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC---------------CCCcEEEEecCCCCC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN---------------DMDGILVLGATNIPW 260 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~---------------~~~~v~vi~ttn~~~ 260 (330)
.. .+..++... ....|||||| ++.+..++.|+..+++..- +..++.+||||++..
T Consensus 89 -----~~-dl~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g 160 (233)
T PF05496_consen 89 -----AG-DLAAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG 160 (233)
T ss_dssp -----CH-HHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC
T ss_pred -----HH-HHHHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc
Confidence 11 122222222 3457999999 4445666777777765321 113478999999999
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
.+.+.|++||+....+..++.++...|+++.....+..+++.....+|+.+.|- ++--.+++++
T Consensus 161 ~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt-PRiAnrll~r 224 (233)
T PF05496_consen 161 LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT-PRIANRLLRR 224 (233)
T ss_dssp CTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS-HHHHHHHHHH
T ss_pred ccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC-hHHHHHHHHH
Confidence 999999999999889999999999999999999999999999999999999984 4444455544
No 41
>KOG0742|consensus
Probab=99.90 E-value=9.3e-23 Score=178.07 Aligned_cols=200 Identities=26% Similarity=0.399 Sum_probs=152.3
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
.+...|++||-...+...|....+.-. .-.....|.++|+||||||||||++|+-||... |..+-.++..++..-
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTa----NTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-GlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATA----NTKKHQAPFRNILFYGPPGTGKTMFARELARHS-GLDYAIMTGGDVAPL 423 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhc----ccccccchhhheeeeCCCCCCchHHHHHHHhhc-CCceehhcCCCcccc
Confidence 345568899998888888887664321 112344577999999999999999999999998 676666666665431
Q ss_pred ccChhHHHHHHHHHHHHhcCC-eEEEEeC-----------CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHH
Q psy3808 199 WLGESEKLVKTLFELARAHRP-SIIFIDE-----------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAI 266 (330)
Q Consensus 199 ~~~~~~~~~~~~f~~a~~~~~-~ii~iDe-----------~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l 266 (330)
-.+.-..++.+|+.+..... -++|||| -+......+|..++-.-......++++.+||+|.++|.++
T Consensus 424 -G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 424 -GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred -chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHH
Confidence 22234578999999987654 4788999 2334455667777766555556788888999999999999
Q ss_pred HhccccEEEecCCCHHHHHHHHHHHhcCCCC--------------------------CCChHhHHHHHHHcCCCCHHHHH
Q psy3808 267 RRRFEKRIYIALPELNARLFMFRHHLGNTRN--------------------------TISDENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 267 ~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~--------------------------~~~~~~~~~la~~~~g~~~~di~ 320 (330)
-.|++.+|.||+|..++|..|+..|+.++-. .+++..+...|+.|+||||++|.
T Consensus 503 ~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREia 582 (630)
T KOG0742|consen 503 NDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIA 582 (630)
T ss_pred HhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHH
Confidence 9999999999999999999999988765410 12334567899999999999999
Q ss_pred HHHh
Q psy3808 321 TLER 324 (330)
Q Consensus 321 ~l~~ 324 (330)
.|+-
T Consensus 583 kLva 586 (630)
T KOG0742|consen 583 KLVA 586 (630)
T ss_pred HHHH
Confidence 8873
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=2.1e-22 Score=176.60 Aligned_cols=195 Identities=20% Similarity=0.243 Sum_probs=146.2
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCC----CCCcceEEECCCCCchHHHHHHHHHHhC------CCcEEEecccch
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKR----VPWKGILLFGPPGTGKSYLAKAVATEAN------NSTFFSVSSSDL 195 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~ill~GppGtGKT~la~~la~~~~------~~~~~~~~~~~~ 195 (330)
+++|++++|+.+.+.+.+ +..+..+...+ .|..+++|+||||||||++|++++..+. ..+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998766 32333333222 2445899999999999999999998772 236899999999
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh------------hHHHHHHHHhcCCCCCCcEEEEecCCCC--C-
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG------------ISNALFLLLSGVGNDMDGILVLGATNIP--W- 260 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~------------~~~~l~~~l~~~~~~~~~v~vi~ttn~~--~- 260 (330)
.+.+.|.+...+..+|+.+. +++||||| ++.. ..+.++..++ ....++++|++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDE-i~~L~~~~~~~~~~~~~~~~Ll~~le---~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDE-AYYLYRPDNERDYGQEAIEILLQVME---NQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEec-hhhhccCCCccchHHHHHHHHHHHHh---cCCCCEEEEEeCCcHHHHH
Confidence 88888988777777777653 48999999 6522 2344445554 334567888777543 2
Q ss_pred --CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHc------CC-CCHHHHHHHHhhccc
Q psy3808 261 --VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRT------EG-YSGADISTLERNFKV 328 (330)
Q Consensus 261 --~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~------~g-~~~~di~~l~~~a~~ 328 (330)
.++|+|.+||+..|.||+++.+++..|++.++.+....+++..+..++... +. -+++.+.++++.|..
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999887777877777776652 22 247899999988764
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.4e-21 Score=171.11 Aligned_cols=181 Identities=28% Similarity=0.373 Sum_probs=136.8
Q ss_pred CCCCCcccccchHHHHH---HHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 119 KPNVKWTDVAGLEAAKE---ALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
-.+.++++++|++.+.. -|.+.+. .+. ..+++|||||||||||+|+.||+.. +..|..+|+...
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~----------~~~--l~SmIl~GPPG~GKTTlA~liA~~~-~~~f~~~sAv~~ 84 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVE----------AGH--LHSMILWGPPGTGKTTLARLIAGTT-NAAFEALSAVTS 84 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHh----------cCC--CceeEEECCCCCCHHHHHHHHHHhh-CCceEEeccccc
Confidence 35789999999998763 3444441 122 2489999999999999999999999 789998887432
Q ss_pred hccccChhHHHHHHHHHHHHhcC----CeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecC--CCCCCcCHHHHhc
Q psy3808 196 VSKWLGESEKLVKTLFELARAHR----PSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGAT--NIPWVLDAAIRRR 269 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~----~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt--n~~~~l~~~l~~R 269 (330)
.-+.++.+++.++... ..|||||| +++........++..+++ ..+++||+| |+...++++|+||
T Consensus 85 -------gvkdlr~i~e~a~~~~~~gr~tiLflDE-IHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 85 -------GVKDLREIIEEARKNRLLGRRTILFLDE-IHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred -------cHHHHHHHHHHHHHHHhcCCceEEEEeh-hhhcChhhhhhhhhhhcC--CeEEEEeccCCCCCeeecHHHhhh
Confidence 3456788888885532 47999999 666555555555555443 457888877 7778999999999
Q ss_pred cccEEEecCCCHHHHHHHHHHHhc--CCCCC-----CChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 270 FEKRIYIALPELNARLFMFRHHLG--NTRNT-----ISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 270 f~~~i~~~~p~~~~r~~il~~~l~--~~~~~-----~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
+ .++.+.+.+.++...++++.+. ..+.. +++..+..|+..+.|...+.|+.+.
T Consensus 155 ~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE 214 (436)
T COG2256 155 A-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLE 214 (436)
T ss_pred h-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHH
Confidence 9 7799999999999999988333 23332 5788999999999998887776654
No 44
>KOG0744|consensus
Probab=99.87 E-value=1.1e-21 Score=166.66 Aligned_cols=199 Identities=27% Similarity=0.413 Sum_probs=149.6
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCC-CCC-cceEEECCCCCchHHHHHHHHHHh--------CCCcEEEecc
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPW-KGILLFGPPGTGKSYLAKAVATEA--------NNSTFFSVSS 192 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~-~~ill~GppGtGKT~la~~la~~~--------~~~~~~~~~~ 192 (330)
-|+.++--..+|+.+..++...+...+-....+ ..+ +-+|+|||||||||+|++++|+.+ ....++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 466677777899999888866554443322222 122 459999999999999999999987 2235789999
Q ss_pred cchhccccChhHHHHHHHHHHHHhc---CCe--EEEEeC-----------------CcchhhHHHHHHHHhcCCCCCCcE
Q psy3808 193 SDLVSKWLGESEKLVKTLFELARAH---RPS--IIFIDE-----------------RIDRGISNALFLLLSGVGNDMDGI 250 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~f~~a~~~---~~~--ii~iDe-----------------~~~~~~~~~l~~~l~~~~~~~~~v 250 (330)
..++++|.+++.+.+..+|+..... ..+ .++||| ...-++.++++++++.+... ++|
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nv 298 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNV 298 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCE
Confidence 9999999999999999999876542 223 456898 11135678999999998765 789
Q ss_pred EEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC---CCCC--------------ChHhHHHHHHH-cC
Q psy3808 251 LVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT---RNTI--------------SDENLKELAKR-TE 312 (330)
Q Consensus 251 ~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~---~~~~--------------~~~~~~~la~~-~~ 312 (330)
++++|+|..+.+|.+|..|-+.+.++.+|+...+.+|++..+++. ++.. .+.....++.. +.
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999876543 1111 11223344444 48
Q ss_pred CCCHHHHHHH
Q psy3808 313 GYSGADISTL 322 (330)
Q Consensus 313 g~~~~di~~l 322 (330)
|.||+.|.-+
T Consensus 379 gLSGRtlrkL 388 (423)
T KOG0744|consen 379 GLSGRTLRKL 388 (423)
T ss_pred CCccchHhhh
Confidence 9999888754
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.4e-20 Score=172.49 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=143.9
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-------- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-------- 186 (330)
+..++.+.+|++++|++.+++.|...+.. +..++.+||+||||||||++|+.+|+.+.+..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 44578899999999999999999988742 12235699999999999999999999984321
Q ss_pred ---------------EEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 187 ---------------FFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 187 ---------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
++.+++.. ...-..++.+...+. .....|+|||| ++......+..++..++.+.
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDE-ah~Ls~~A~NALLKtLEEPp 149 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDE-VHMLTDQSFNALLKTLEEPP 149 (484)
T ss_pred CCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEec-hhhcCHHHHHHHHHHhhcCC
Confidence 12222110 001123333333322 33456999999 88777777777777777777
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
..+++|.+|+.++.+.+++++|| ..+.|.+++.++....++..+...+..+++..+..||+.++|.....|..+
T Consensus 150 ~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 150 AHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred CceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 88999999999999999999999 568999999999999999999988888899999999999999777655544
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.1e-20 Score=147.45 Aligned_cols=116 Identities=39% Similarity=0.676 Sum_probs=101.7
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcC-CeEEEEeCCcchh--------
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHR-PSIIFIDERIDRG-------- 231 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~-~~ii~iDe~~~~~-------- 231 (330)
|||+||||||||++|+.+|+.+ +.+++.+++.++.+.+.+.....+..+|..+.... |+|||||| +|..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe-~d~l~~~~~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE-IDKLFPKSQPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET-GGGTSHHCSTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhc-ccccccccccccccccccccccccccccccccccccceeeeecc-chhccccccccc
Confidence 6899999999999999999999 79999999999998889999999999999998887 99999999 5532
Q ss_pred ------hHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHH-hccccEEEecC
Q psy3808 232 ------ISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIR-RRFEKRIYIAL 278 (330)
Q Consensus 232 ------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~-~Rf~~~i~~~~ 278 (330)
....+...++.......++++|+|||.++.+++++. +||+..+.+|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 345666777776665567999999999999999999 99999999874
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=9.9e-20 Score=162.56 Aligned_cols=186 Identities=24% Similarity=0.341 Sum_probs=134.4
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccCh
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE 202 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 202 (330)
+|++++|++++++.|..++..... ...++.+++|+||||||||++|+++|+++ +..+..+....... .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~~~~~~~~~~~~~~--~~- 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEM-GVNLKITSGPALEK--PG- 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHh-CCCEEEeccchhcC--ch-
Confidence 689999999999999887743221 12234679999999999999999999999 56665554432211 11
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCC---------------CCCCcEEEEecCCCCCCcCH
Q psy3808 203 SEKLVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVG---------------NDMDGILVLGATNIPWVLDA 264 (330)
Q Consensus 203 ~~~~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~---------------~~~~~v~vi~ttn~~~~l~~ 264 (330)
.+...+.. ...+.+||||| ++. ...+.+...+.... ....++.+|++||.++.+++
T Consensus 71 ---~l~~~l~~--~~~~~vl~iDE-i~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~ 144 (305)
T TIGR00635 71 ---DLAAILTN--LEEGDVLFIDE-IHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTS 144 (305)
T ss_pred ---hHHHHHHh--cccCCEEEEeh-HhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCH
Confidence 11122221 13567999999 553 33344444443222 11234788899999999999
Q ss_pred HHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 265 AIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 265 ~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
++++||...+.+++|+.+++..+++..+...+..+++..+..+++.+.|+.. .+..+++.+
T Consensus 145 ~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR-~~~~ll~~~ 205 (305)
T TIGR00635 145 PLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPR-IANRLLRRV 205 (305)
T ss_pred HHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc-hHHHHHHHH
Confidence 9999998889999999999999999998888888899999999999999774 445555543
No 48
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=9.9e-20 Score=152.59 Aligned_cols=183 Identities=23% Similarity=0.337 Sum_probs=140.6
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
...+..|++++|++.+++.|.-++.-... .+....|+||+||||.||||||+.+|+++ |..+...+...+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCeEecccccccC
Confidence 44578999999999999999877743322 23345699999999999999999999999 67666555544321
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC---------------CCCcEEEEecCCCCC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN---------------DMDGILVLGATNIPW 260 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~---------------~~~~v~vi~ttn~~~ 260 (330)
.|. +-.++.. -....|+|||| ++...+.+.+...|+++.- +...+.+||+|.+..
T Consensus 91 --~gD----laaiLt~--Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G 162 (332)
T COG2255 91 --PGD----LAAILTN--LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG 162 (332)
T ss_pred --hhh----HHHHHhc--CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc
Confidence 121 2222221 13457999999 3334556667777765432 224578999999999
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
.+...|+.||+....+..++.++..+|+.+.....+..+++.....+|+.+.|-..
T Consensus 163 ~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 163 MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999888889999999999999999654
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=5.4e-20 Score=174.70 Aligned_cols=188 Identities=18% Similarity=0.210 Sum_probs=142.9
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..+|.+.+|++|+|++.+++.|..++. .+...+.+||+||+|||||++++++++.+.+.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 4467889999999999999999998873 12233578999999999999999999988321
Q ss_pred --------------cEEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 186 --------------TFFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 186 --------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
.++.++..+ ...-..++.+.+.+.. ....|||||| .|......+..++..++...
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDE-ah~LT~~A~NALLKtLEEPP 147 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDE-VHMLTNHAFNAMLKTLEEPP 147 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeC-hhhCCHHHHHHHHHHHHhcC
Confidence 122222211 0112234444444332 3456999999 77766666666666666666
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHH
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADIST 321 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~ 321 (330)
.++.||.+||.++.+.+.++||| ..+.|..++.++....++..+...++.+++..+..|++.++|.....|+.
T Consensus 148 ~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 148 PHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 78899999999999999999999 67999999999999999999988888889999999999999987655544
No 50
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=4.4e-20 Score=173.23 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=144.7
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..++.+.+|++|+|++.+++.|...+.. +..++.+||+||+|+|||++|+.+++.+.+.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 34678899999999999999999988832 2223678999999999999999999998431
Q ss_pred -------------------cEEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhc
Q psy3808 186 -------------------TFFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSG 242 (330)
Q Consensus 186 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~ 242 (330)
.++.++... ...-..++.+.+... .....|++||| .|......+..++..
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDE-ah~Ls~~AaNALLKT 147 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDE-VHMLTNHAFNAMLKT 147 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEC-hHhcCHHHHHHHHHh
Confidence 112222211 011223344443332 33457999999 888877888888888
Q ss_pred CCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 243 VGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 243 ~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
++....+++||.+||.++.+.+.++||| ..+.|..++.++....++..+...+...++..+..|++.++|..+..+ ++
T Consensus 148 LEEPP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdAL-sL 225 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDAL-SL 225 (700)
T ss_pred hccCCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH-HH
Confidence 8887788999999999999999999999 669999999999999999888887777788889999999998666444 44
Q ss_pred Hh
Q psy3808 323 ER 324 (330)
Q Consensus 323 ~~ 324 (330)
+.
T Consensus 226 Ld 227 (700)
T PRK12323 226 TD 227 (700)
T ss_pred HH
Confidence 33
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=8e-20 Score=169.93 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=141.3
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+...+.+.+|++++|++.+++.|...+.. +..++++||+||||||||++|+++|+.+.+.
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 34567899999999999999998887632 2234679999999999999999999988321
Q ss_pred --------------cEEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 186 --------------TFFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 186 --------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
.++.++++. ...-..++.+...+.. ....||+||| ++......+..++..+....
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE-~h~Lt~~a~~~LLk~LE~p~ 145 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDE-VHMLTKEAFNALLKTLEEPP 145 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEC-hHHhHHHHHHHHHHHHHhCC
Confidence 233333321 0112334444444432 2346999999 87766666666666666655
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
..+++|++|+.+..+++++.+|+ ..+.|++++..+...+++..+...+..+++..+..|++.+.|..+..+..+.
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67888877777889999999999 5799999999999999999998888888999999999999887665555544
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=2.4e-19 Score=161.34 Aligned_cols=189 Identities=23% Similarity=0.299 Sum_probs=138.8
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
++.+.+|++++|.++.++.+...+.... ..+.++++++|+||||||||++|+++|+++ +..+...+...+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~-------~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAK-------KRGEALDHVLLYGPPGLGKTTLANIIANEM-GVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEECCCCccHHHHHHHHHHHh-CCCeEEEecccccC
Confidence 4456799999999999999988774321 123345789999999999999999999999 56665555433211
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh---hHHHHHHHHhcCCC---------------CCCcEEEEecCCCC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDERIDRG---ISNALFLLLSGVGN---------------DMDGILVLGATNIP 259 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~---------------~~~~v~vi~ttn~~ 259 (330)
...+..++... ..++|||||| ++.. ..+.+...+..... ...++.+|++||++
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDE-i~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~ 160 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDE-IHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA 160 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEec-HhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc
Confidence 12233333322 3568999999 6533 34445455543210 11346788999999
Q ss_pred CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 260 WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 260 ~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
..+++++++||...+.+++|+.+++.+|++..+...+..+++..+..+++.+.|+.. .+..+++
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR-~a~~~l~ 224 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPR-IANRLLR 224 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCch-HHHHHHH
Confidence 999999999999899999999999999999999988888999999999999999764 4444444
No 53
>KOG0743|consensus
Probab=99.84 E-value=9.3e-20 Score=162.38 Aligned_cols=187 Identities=24% Similarity=0.350 Sum_probs=146.7
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCC-cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcccc
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPW-KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWL 200 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 200 (330)
.+|+.++-..+.|+.|.+-+..++.....+..-|.|| ||.|||||||||||+++.|+|+.+ +..++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-NYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-CCceEEeeeccccCc--
Confidence 8899999999999999999999999999999999998 689999999999999999999999 788888887665322
Q ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCCcch---------------------hhHHHHHHHHhcCCCCC-CcEEEEecCCC
Q psy3808 201 GESEKLVKTLFELARAHRPSIIFIDERIDR---------------------GISNALFLLLSGVGNDM-DGILVLGATNI 258 (330)
Q Consensus 201 ~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~---------------------~~~~~l~~~l~~~~~~~-~~v~vi~ttn~ 258 (330)
.. ++.+.... ...+||+|.+ +|- .....|+.+++++-... +--++|.|||.
T Consensus 275 ---~d-Lr~LL~~t--~~kSIivIED-IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ---SD-LRHLLLAT--PNKSILLIED-IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---HH-HHHHHHhC--CCCcEEEEee-cccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 22 55554433 3347999988 441 23345788888875543 22466779999
Q ss_pred CCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCC--CCHHHHHH
Q psy3808 259 PWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEG--YSGADIST 321 (330)
Q Consensus 259 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g--~~~~di~~ 321 (330)
++.|||||+| |++.+|+++.-+..+-..++..+++-.. +..-+..+.+...+ .|++|+..
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHH
Confidence 9999999999 9999999999999999999999987643 23344555555444 47887754
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.83 E-value=5.2e-19 Score=175.21 Aligned_cols=191 Identities=23% Similarity=0.285 Sum_probs=136.1
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh---------
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV--------- 196 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~--------- 196 (330)
++.|++.+++.+.+++....... .....+++|+||||||||++|+++|+.+ +.+++.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l-~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKAL-NRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHh-cCCeEEEeCCCcccHHHHcCCC
Confidence 58899999999999775432111 1122379999999999999999999999 7889888765432
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh-------HHHHHHHHhc-----CC-------CCCCcEEEEecCC
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI-------SNALFLLLSG-----VG-------NDMDGILVLGATN 257 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~-------~~~l~~~l~~-----~~-------~~~~~v~vi~ttn 257 (330)
..|.|.....+...|..+....| |||||| +|... .++|+..++. +. .+..++++|+|||
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDE-idk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN 471 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDE-IDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATAN 471 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEec-hhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecC
Confidence 24566666666677777766666 899999 66543 3566666653 11 1224689999999
Q ss_pred CCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHh-----cCC-----CCCCChHhHHHHHHHcC-CCCHH----HHHHH
Q psy3808 258 IPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHL-----GNT-----RNTISDENLKELAKRTE-GYSGA----DISTL 322 (330)
Q Consensus 258 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l-----~~~-----~~~~~~~~~~~la~~~~-g~~~~----di~~l 322 (330)
.++.++++|++|| ..|.|+.|+.+++..|++.++ ... ...+++..+..|++... .+..+ .|..+
T Consensus 472 ~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 472 SIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKI 550 (775)
T ss_pred CchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHH
Confidence 9999999999999 579999999999999998765 211 23567778888877432 23333 45555
Q ss_pred Hhhc
Q psy3808 323 ERNF 326 (330)
Q Consensus 323 ~~~a 326 (330)
|+.+
T Consensus 551 ~~~~ 554 (775)
T TIGR00763 551 CRKA 554 (775)
T ss_pred HHHH
Confidence 5544
No 55
>KOG0989|consensus
Probab=99.83 E-value=1.6e-19 Score=152.95 Aligned_cols=195 Identities=22% Similarity=0.210 Sum_probs=142.0
Q ss_pred ccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE-----
Q psy3808 113 GAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF----- 187 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~----- 187 (330)
..+..+|.+.+|++++|++.+++.|+..+.. ... .++|||||||||||+.|+++|.++.+...
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~----------~~l--p~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR----------RIL--PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh----------cCC--ceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 4567789999999999999999999998842 112 38999999999999999999999955322
Q ss_pred EEecccchhccccChhHHHHHHHHHHHHh---------cC-CeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 188 FSVSSSDLVSKWLGESEKLVKTLFELARA---------HR-PSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~f~~a~~---------~~-~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
...+.++..+..++. ..+. -|..... .+ +-|+++|| .|....++...+..-++.....+.+|.-||
T Consensus 92 l~lnaSderGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDE-cdsmtsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 92 LELNASDERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDE-CDSMTSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred hhhcccccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEec-hhhhhHHHHHHHHHHHhccccceEEEEEcC
Confidence 233444443332211 1111 1111111 12 25999999 665554444333333333445688888999
Q ss_pred CCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 258 IPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 258 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
....+.+.+.+|+.+ +.|+....+.....++.++.+.++..++..++.++..++|.-...|.-|-+
T Consensus 168 ylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 168 YLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred ChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999999999999955 889998888888889999999999999999999999999988777665544
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.8e-19 Score=168.18 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=140.7
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..++.+.+|++|+|++.+++.|..++. .+..++.+||+||||+|||++|+++|+.+.+.
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 3457788999999999999999998883 22334689999999999999999999998431
Q ss_pred --------------cEEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 186 --------------TFFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 186 --------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
.++.+++++- ..-..++.+...+. ..+..|++||| .+......+..++..++...
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDE-Vh~LS~~A~NALLKtLEEPP 146 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDE-VHMLSTHSFNALLKTLEEPP 146 (702)
T ss_pred cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEec-hHhcCHHHHHHHHHHHhcCC
Confidence 1222222210 11223444443332 23457999999 77665555555555555555
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
..+.+|.+|+.++.+.+.+++|+ ..+.|.+++..+....++..+...+..+++..+..|++.+.|..+ ++.+++..
T Consensus 147 ~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLR-dALnLLDQ 222 (702)
T PRK14960 147 EHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLR-DALSLTDQ 222 (702)
T ss_pred CCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHH
Confidence 67778888888888999999999 669999999999999999999988888999999999999998554 44444433
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=3.8e-19 Score=172.03 Aligned_cols=196 Identities=19% Similarity=0.187 Sum_probs=142.1
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc------E-E
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST------F-F 188 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~------~-~ 188 (330)
..++.+.+|++|+|++.+++.|+.++.. + ..++.+||+||||||||++|+++|+.+.+.. + .
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~----------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ----------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh----------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 4567889999999999999999988732 1 2235679999999999999999999984321 1 0
Q ss_pred Eecccchhccc------c-C---hhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEe
Q psy3808 189 SVSSSDLVSKW------L-G---ESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLG 254 (330)
Q Consensus 189 ~~~~~~~~~~~------~-~---~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ 254 (330)
+-+|..+.... + + ..-..++.+..... .....|+|||| ++......+..++..++.+...+.||+
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDE-Ah~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDE-VHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEec-hHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 11111111000 0 0 11123344433332 23456999999 887777777777777777777888888
Q ss_pred cCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 255 ATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 255 ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
+|+.+..+.+.+++|+ .++.|.+++.++....+++.+...++.+++..+..|++.+.|..+ ++.+++..
T Consensus 155 aTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~ALnLLdQ 223 (944)
T PRK14949 155 ATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DALSLTDQ 223 (944)
T ss_pred ECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHH
Confidence 8888889999999999 679999999999999999988877778888999999999998666 44455543
No 58
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=4e-19 Score=161.61 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=138.0
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-------- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-------- 186 (330)
+..++.+.+|++++|++.+++.+...+.. +..++.++|+||||+|||++|+++|+.+.+..
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34567889999999999999999987732 12235789999999999999999999883211
Q ss_pred ---------------EEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 187 ---------------FFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 187 ---------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
++.+++.. ...-..++.+...+.. ....|++||| .+......+..++..+..+.
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDE-a~~l~~~a~naLLk~lEe~~ 147 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDE-VHMLSRHSFNALLKTLEEPP 147 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEC-hhhcCHHHHHHHHHHHhcCC
Confidence 11111110 0112234444444332 2345999999 77666555555566565565
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
..+.+|.+|+.+..+.+++.+|+ ..+.|++|+.++...+++..+...+..+++..+..++..+.|..+ ++.+++..
T Consensus 148 ~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R-~al~~l~~ 223 (363)
T PRK14961 148 QHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMR-DALNLLEH 223 (363)
T ss_pred CCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHH
Confidence 67777777887888999999999 679999999999999999988888877899999999999998554 44444443
No 59
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=4e-19 Score=164.63 Aligned_cols=191 Identities=18% Similarity=0.178 Sum_probs=145.1
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC-----------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN----------- 184 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~----------- 184 (330)
..++.+.+|+|++|++.+++.|...+.. +..++++||+||||+|||++|+.+|..+.+
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 4578889999999999999999887632 233478999999999999999999987621
Q ss_pred ------------CcEEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCC
Q psy3808 185 ------------STFFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMD 248 (330)
Q Consensus 185 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~ 248 (330)
..++.+++++- ..-..++.+.+.+.. ....|++||| .+......+..++..++.+.+
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDE-ah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDE-VHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeC-hHhCCHHHHHHHHHHHhCCCC
Confidence 12233333211 112345555554432 3456999999 777766677777777777777
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
.+.+|.+|+.+..+.+.+++|+ ..+.|.+++..+....++..+...+..+++..+..|++.++| +.+++.+++..+
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdql 221 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQA 221 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 8888888888888999999999 669999999999999999999998888999999999999987 444555555443
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=99.82 E-value=5.7e-19 Score=158.22 Aligned_cols=185 Identities=21% Similarity=0.195 Sum_probs=135.1
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----cEEEe
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS----TFFSV 190 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~----~~~~~ 190 (330)
+..++.+.+|++++|++++++.|..++.. ... .+++|+||||||||++|+++|+++.+. .++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~----------~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARD----------GNM--PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhc----------CCC--ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 45678899999999999999999887631 222 369999999999999999999997332 35555
Q ss_pred cccchhccccChhHHHHHHHHHH-HH------hcCCeEEEEeCCcchhhH---HHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFEL-AR------AHRPSIIFIDERIDRGIS---NALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~-a~------~~~~~ii~iDe~~~~~~~---~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
++++..+. ..++..... +. ...+.||+||| +|.... +.+...++. ....+.+|.++|.+.
T Consensus 71 n~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE-~d~lt~~aq~aL~~~lE~---~~~~t~~il~~n~~~ 140 (319)
T PLN03025 71 NASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDE-ADSMTSGAQQALRRTMEI---YSNTTRFALACNTSS 140 (319)
T ss_pred cccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEec-hhhcCHHHHHHHHHHHhc---ccCCceEEEEeCCcc
Confidence 55443211 122222211 11 12357999999 665544 445444443 334456677888888
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
.+.+++++|+ ..+.|++|+.++....++..+...+..+++..+..++..+.|..+.-+..+
T Consensus 141 ~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 141 KIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred ccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999998 579999999999999999999998988999999999999998776655554
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=7.2e-19 Score=167.50 Aligned_cols=186 Identities=20% Similarity=0.215 Sum_probs=140.7
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc---------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--------- 186 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--------- 186 (330)
..++.+.+|++|+|++.+++.|...+.. + ..++.+||+||+|+|||++|+++|+.+.+..
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDL----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 4567889999999999999999988732 2 2235689999999999999999999984311
Q ss_pred --------------EEEecccchhccccChhHHHHHHHHHHH----HhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCC
Q psy3808 187 --------------FFSVSSSDLVSKWLGESEKLVKTLFELA----RAHRPSIIFIDERIDRGISNALFLLLSGVGNDMD 248 (330)
Q Consensus 187 --------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a----~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~ 248 (330)
++.++...- . .-..++.+...+ ......|++||| .|......+..++..++.+..
T Consensus 76 C~~C~~i~~g~~~D~ieidaas~----~--~VddiR~li~~~~~~p~~g~~KV~IIDE-ah~Ls~~a~NALLKtLEEPp~ 148 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAASR----T--KVEDTRELLDNVQYAPARGRFKVYLIDE-VHMLSRHSFNALLKTLEEPPE 148 (647)
T ss_pred CHHHHHHHcCCCCCceeeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEec-hHhCCHHHHHHHHHHHHcCCC
Confidence 122222110 0 112234433332 223456999999 887777777777777777777
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHH
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~ 320 (330)
.+.||.+|+.+..+.+.+++|| ..+.|.+++.++....++..+...++..++..+..|++.++|..+..+.
T Consensus 149 ~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 149 HVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred CeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 8888888988999999999998 7799999999999999999888777778889999999999997665444
No 62
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=4.9e-19 Score=166.39 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=143.7
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-------- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-------- 186 (330)
+..++.+.+|++|+|++.+++.|...+.. +..++.+||+||||||||++|+++|+.+.+..
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 45678899999999999999999988832 22235789999999999999999999883321
Q ss_pred ---------------EEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 187 ---------------FFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 187 ---------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
++.++++. ...-..++.+...+. .....|++||| .|......+..++..++...
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE-~~~ls~~a~naLLk~LEepp 147 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDE-VHMLSGHSFNALLKTLEEPP 147 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEC-hHhcCHHHHHHHHHHHhccC
Confidence 33333221 011222444444332 23456999999 88777777777777777777
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
+.+.+|.+|+.++.+.+.+++|+ ..+.|.+++..+....++.++...+..+++..+..+++.++|. .+++.+++..+
T Consensus 148 ~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~Gs-lR~al~lLdq~ 224 (509)
T PRK14958 148 SHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGS-VRDALSLLDQS 224 (509)
T ss_pred CCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-HHHHHHHHHHH
Confidence 78888888888899999999999 6689999999998888999998888888999999999999874 44565655443
No 63
>KOG0735|consensus
Probab=99.81 E-value=4.1e-19 Score=164.77 Aligned_cols=194 Identities=23% Similarity=0.280 Sum_probs=155.1
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC---CcEEEecccchhccccC
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN---STFFSVSSSDLVSKWLG 201 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~---~~~~~~~~~~~~~~~~~ 201 (330)
.|++-...+++...+....|. ....++||+||+|||||.|+++++.++.. .++..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n~~~spv----------~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV----------FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhcccc----------cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566667777776665443331 22257999999999999999999999832 35567899988777677
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCCcc-----------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCH
Q psy3808 202 ESEKLVKTLFELARAHRPSIIFIDERID-----------------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDA 264 (330)
Q Consensus 202 ~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~ 264 (330)
...+.+..+|..+.+++|+||++|+ +| .+....+...+..+......+.+|++.+....++|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDd-ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDD-LDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcc-hhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 7788899999999999999999999 33 22223344455555556667899999999999999
Q ss_pred HHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 265 AIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 265 ~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
.|.+ +|+.++.+|.|...+|.+|++..+.+........++..++..|+||...|+..++.+|.+.
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~ 623 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHE 623 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHH
Confidence 8887 8999999999999999999999998876555666777899999999999999999998764
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.81 E-value=8.1e-19 Score=172.96 Aligned_cols=180 Identities=26% Similarity=0.366 Sum_probs=141.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcEE
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTFF 188 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~~ 188 (330)
...+-++++++|.++....+.+.+.. ...++++|+||||||||++|+++|..+ .+..++
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 34567899999999998887766521 123589999999999999999999986 245688
Q ss_pred Eecccchh--ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh------------HHHHHHHHhcCCCCCCcEEEEe
Q psy3808 189 SVSSSDLV--SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI------------SNALFLLLSGVGNDMDGILVLG 254 (330)
Q Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~------------~~~l~~~l~~~~~~~~~v~vi~ 254 (330)
.++++.+. .+|.|+.+..++.+|+.+....++|||||| ++... .+.+...+. ...+.+||
T Consensus 243 ~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE-ih~l~~~g~~~~~~~~~~~~L~~~l~-----~g~i~~Ig 316 (731)
T TIGR02639 243 SLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE-IHTIVGAGATSGGSMDASNLLKPALS-----SGKLRCIG 316 (731)
T ss_pred EecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec-HHHHhccCCCCCccHHHHHHHHHHHh-----CCCeEEEE
Confidence 88888877 478899999999999998878889999999 55322 222322222 25688999
Q ss_pred cCCCC-----CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC----CCCCCChHhHHHHHHHcCCCCH
Q psy3808 255 ATNIP-----WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN----TRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 255 ttn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~~~g~~~ 316 (330)
+||.+ ...|+++.|||+ .|.++.|+.+++..|++..... ++..+++..+..++..+..|.+
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 99863 367999999996 6999999999999999965543 3456789999999999988754
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=1.4e-18 Score=162.19 Aligned_cols=198 Identities=19% Similarity=0.162 Sum_probs=144.5
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-------- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-------- 186 (330)
+..++.+.+|+|++|++.+++.|...+.. +..++++||+||||||||++|+++|+.+.+..
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 44678899999999999999999887631 22346899999999999999999999983211
Q ss_pred ---EEEecccchhccc----------cChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCc
Q psy3808 187 ---FFSVSSSDLVSKW----------LGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDG 249 (330)
Q Consensus 187 ---~~~~~~~~~~~~~----------~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~ 249 (330)
..+-+|..+.... ....-..++.+.+.+.. ....|++||| .+......+..++..+......
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDE-a~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDE-VHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEC-hhhcCHHHHHHHHHHHhhcCCC
Confidence 1111111111100 01123345556555543 2456999999 7766666666666666666677
Q ss_pred EEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 250 ILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 250 v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
+++|.+|+.+..+.+++.+|+ ..+.|.+++..+...+++..+...+..+++..+..+++.++|... ++.+++..+
T Consensus 159 ~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR-~al~~Ldka 233 (507)
T PRK06645 159 IIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSAR-DAVSILDQA 233 (507)
T ss_pred EEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHH
Confidence 888888888889999999999 568999999999999999999988888899999999999998544 554444443
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.7e-18 Score=162.30 Aligned_cols=186 Identities=20% Similarity=0.197 Sum_probs=140.3
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..++.+.+|++|+|++.+++.|...+.. +..++.+||+||||||||++|+++|+.+.+.
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 44678899999999999999999988742 2233567999999999999999999988321
Q ss_pred -------------cEEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCC
Q psy3808 186 -------------TFFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMD 248 (330)
Q Consensus 186 -------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~ 248 (330)
.++.+++.. ...-..++.+...+. ...+.||+||| .+......+..++..+.....
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDE-ad~ls~~a~naLLk~LEep~~ 145 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDE-AHMMSKSAFNALLKTLEEPPE 145 (504)
T ss_pred ChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEEC-ccccCHHHHHHHHHHHHhCCC
Confidence 122333221 111233444433332 23567999999 776666666667776666666
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
.+++|.+++.+..+.+.+.+|+ ..+.|++|+..+....++..+...+..+++..+..+++.++|..+.-+
T Consensus 146 ~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 146 HVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred CEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 7788888888899999999998 579999999999999999999888888899999999999998666443
No 67
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=1.4e-18 Score=164.92 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=142.1
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE-------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF------- 187 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~------- 187 (330)
+..++.+.+|++|+|++.+++.|..++.. +..++.+||+||+|||||++|+++++.+.+..-
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 45678899999999999999999998742 233467999999999999999999998732210
Q ss_pred EEecccchhcc----------ccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEE
Q psy3808 188 FSVSSSDLVSK----------WLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 188 ~~~~~~~~~~~----------~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi 253 (330)
.+-+|..+... ..+..-..++.++..+. .....||+||| .+......+..++..+....+.+.+|
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDE-ad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDE-VHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred ccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEEC-ccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 00011111000 00111234555554432 23457999999 77655555555555555555678888
Q ss_pred ecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 254 GATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
.+|+.+..+.+.+++|| ..+.|+.++..+....++..+...+..+++..+..|++.++|-.. ++.+++..+
T Consensus 154 LaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslR-dAlnLLDqa 224 (709)
T PRK08691 154 LATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMR-DALSLLDQA 224 (709)
T ss_pred EEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 88888999999999999 568899999999999999999998888899999999999987554 555555443
No 68
>KOG0736|consensus
Probab=99.79 E-value=4.9e-18 Score=159.00 Aligned_cols=164 Identities=28% Similarity=0.422 Sum_probs=141.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc----------
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID---------- 229 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~---------- 229 (330)
.+||+|+||||||++++++|.++ |.+++.++|.++.+...+.++..+...|..++...|+|||+-+ .|
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~l-g~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~-~dvl~id~dgge 510 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASEL-GLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRN-LDVLGIDQDGGE 510 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHh-CCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEec-cceeeecCCCch
Confidence 69999999999999999999999 8999999999999988888899999999999999999999987 22
Q ss_pred -hhhHHHHHHHHh--cCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHH
Q psy3808 230 -RGISNALFLLLS--GVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKE 306 (330)
Q Consensus 230 -~~~~~~l~~~l~--~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~ 306 (330)
..+...+..++. .......+++||++++..+.+++.+++-|...|.+|.|+.++|.+|++.++...... .+.....
T Consensus 511 d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~ 589 (953)
T KOG0736|consen 511 DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQ 589 (953)
T ss_pred hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHH
Confidence 223333333333 233345679999999999999999999888899999999999999999999887654 6788999
Q ss_pred HHHHcCCCCHHHHHHHHhhc
Q psy3808 307 LAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 307 la~~~~g~~~~di~~l~~~a 326 (330)
+|+++.||+.+++..++.+.
T Consensus 590 ~a~~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736|consen 590 LARKTSGFSFGDLEALVAHS 609 (953)
T ss_pred HHHhcCCCCHHHHHHHhcCc
Confidence 99999999999999998765
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=99.79 E-value=4.6e-18 Score=160.36 Aligned_cols=188 Identities=26% Similarity=0.325 Sum_probs=141.0
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
++.++.+.+|++++|++.+++.+..++.... .+.+++++||+||||||||++|+++|+++ +..++.+++++
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el-~~~~ielnasd 74 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDY-GWEVIELNASD 74 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEEcccc
Confidence 5567889999999999999999999885322 23345789999999999999999999999 78888888876
Q ss_pred hhccccChhHHHHHHHHHHHHh------cCCeEEEEeCCcchh-------hHHHHHHHHhcCCCCCCcEEEEecCCCCCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARA------HRPSIIFIDERIDRG-------ISNALFLLLSGVGNDMDGILVLGATNIPWV 261 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~------~~~~ii~iDe~~~~~-------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~ 261 (330)
.... ..+..+...+.. ..+.||+||| +|.. ....+...+.. .+..+|+++|.++.
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDE-aD~L~~~~d~~~~~aL~~~l~~-----~~~~iIli~n~~~~ 142 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDE-VDGIHGNEDRGGARAILELIKK-----AKQPIILTANDPYD 142 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEec-CcccccccchhHHHHHHHHHHc-----CCCCEEEeccCccc
Confidence 4321 122222222211 2467999999 5532 34455555542 23345557788888
Q ss_pred cCH-HHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 262 LDA-AIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 262 l~~-~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
+.+ .+++|+ ..+.|++|+..++..+++..+...+..+++..+..|++.+.|.....|..+..
T Consensus 143 ~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 143 PSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQA 205 (482)
T ss_pred cchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 887 677777 67999999999999999999998888889999999999999877776666543
No 70
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=3.3e-18 Score=162.87 Aligned_cols=190 Identities=21% Similarity=0.235 Sum_probs=143.5
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..++.+.+|++++|++.+++.|...+.. +..++.+||+||+|||||++|+.+|+.+.+.
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34577899999999999999999988742 2234679999999999999999999987321
Q ss_pred --------------cEEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 186 --------------TFFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 186 --------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
.++.++++. +..-..++.+...+.. ....|++||| .+......+..++..++.+.
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE-~~~Lt~~a~naLLKtLEepp 147 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDE-VHMLSTGAFNALLKTLEEPP 147 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEEC-cccCCHHHHHHHHHHhcCCC
Confidence 122222211 1123345555555442 3456999999 88777777777777777777
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
..+++|.+|+.+..+.+++++|+ ..+.|++|+..+....++..+...+..+++..+..+++.++|-.+ +..+++.
T Consensus 148 ~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R-~al~~Ld 222 (559)
T PRK05563 148 AHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMR-DALSILD 222 (559)
T ss_pred CCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 78888888888999999999999 468999999999999999999888888899999999999998444 4444443
No 71
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=3.4e-18 Score=162.60 Aligned_cols=196 Identities=19% Similarity=0.211 Sum_probs=143.3
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-------- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-------- 186 (330)
+..++.+.+|++|+|++.+++.|...+.. . ..++.+||+||+|||||++|+++|+.+.+..
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~----------~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQ----------Q-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 44678889999999999999999988732 1 2235689999999999999999999883210
Q ss_pred ---E-EEecccchhcc----c--c----ChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCC
Q psy3808 187 ---F-FSVSSSDLVSK----W--L----GESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMD 248 (330)
Q Consensus 187 ---~-~~~~~~~~~~~----~--~----~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~ 248 (330)
. .+-+|..+... + + ...-..++.+.+.+.. ....|++||| .|......+..++..++....
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDE-vh~Ls~~a~NaLLKtLEEPP~ 153 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDE-VHMLTNTAFNAMLKTLEEPPE 153 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEC-hhhCCHHHHHHHHHhcccCCC
Confidence 0 01111111000 0 0 0112234555444332 2346999999 888877788888888877777
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
.+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+...+..+++..+..|++.++|..+ ++.+++.
T Consensus 154 ~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR-~al~lLd 227 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMR-DALSLTD 227 (618)
T ss_pred CeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 8888888888888999999999 779999999999999999999888888899999999999998544 4444443
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.4e-18 Score=161.30 Aligned_cols=184 Identities=18% Similarity=0.162 Sum_probs=137.6
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC------c--
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS------T-- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~------~-- 186 (330)
+..++.+.+|++|+|++.+++.|...+.. +..++.+||+||+|||||++|+++|+.+.+. +
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 34578899999999999999999998832 2233568999999999999999999987321 0
Q ss_pred -----------------EEEecccchhccccChhHHHHHHHHHHH----HhcCCeEEEEeCCcchhhHHHHHHHHhcCCC
Q psy3808 187 -----------------FFSVSSSDLVSKWLGESEKLVKTLFELA----RAHRPSIIFIDERIDRGISNALFLLLSGVGN 245 (330)
Q Consensus 187 -----------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a----~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~ 245 (330)
++.++.+.. ..-..++.+...+ ......|++||| .+......+..++..++.
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDE-ah~Lt~~A~NALLK~LEE 144 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDE-AHMVTTAGFNALLKIVEE 144 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEC-CCcCCHHHHHHHHHHHhc
Confidence 111211110 0112233333222 223456999999 777767777777777777
Q ss_pred CCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 246 DMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 246 ~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
....+++|.+|+.+..+.+++++|+ ..+.|..++..+....++.++...+..+++..+..+++.+.|-.+.
T Consensus 145 pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~ 215 (584)
T PRK14952 145 PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRD 215 (584)
T ss_pred CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 7778888888888899999999998 6799999999999999999998888888998999999998885543
No 73
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=3.2e-18 Score=160.94 Aligned_cols=186 Identities=16% Similarity=0.174 Sum_probs=136.4
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..++.+.+|++++|++.+++.+...+.. +..++++||+||||+|||++|+++|..+.+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 45678899999999999999999987731 2233689999999999999999999987321
Q ss_pred --------------cEEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 186 --------------TFFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 186 --------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
.++.+++... ..-..++.+...+.. ....|++||| .+.....+...++..+..+.
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDE-ad~Lt~~A~NaLLKtLEEPp 147 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDE-AHMLSTSAWNALLKTLEEPP 147 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEec-hHhCCHHHHHHHHHHHHhCC
Confidence 1122222110 112234444443332 2346999999 76655555555555555565
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
..+++|.+|+.+..+.+++++|+ ..+.|++|+..+....++..+...+..+++..+..++..+.|..+..+
T Consensus 148 ~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~Al 218 (605)
T PRK05896 148 KHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGL 218 (605)
T ss_pred CcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 67888888888899999999999 469999999999999999988888877889999999999998655433
No 74
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=6e-18 Score=154.00 Aligned_cols=187 Identities=22% Similarity=0.239 Sum_probs=127.7
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc---------------
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--------------- 186 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--------------- 186 (330)
..|++|+|++.+++.|...+.........+ .+..++++||+||||+|||++|+++|..+.+..
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 368999999999999999997544322111 112347899999999999999999999772211
Q ss_pred -------EEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEec
Q psy3808 187 -------FFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 187 -------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~t 255 (330)
++.+.+.. ... .-..++.+++.+.. ....|++||| .+.........++..++.+.+++++|.+
T Consensus 80 ~~~~hpD~~~i~~~~---~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDe-ad~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---LSI--GVDEVRELVTIAARRPSTGRWRIVVIED-ADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred hcCCCCCEEEecccc---ccC--CHHHHHHHHHHHHhCcccCCcEEEEEec-hhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 11122211 001 12345666665543 2346999999 7665555545555555555566666666
Q ss_pred CCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 256 TNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 256 tn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
|+.++.+.|+++||+ ..+.|++|+.++....+... .+ .++.....++..+.|..+..+.-+
T Consensus 154 a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 154 APSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRR---DG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred ECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 666899999999999 67999999999877766532 22 466778899999999888665543
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=5.7e-18 Score=159.11 Aligned_cols=185 Identities=16% Similarity=0.170 Sum_probs=135.5
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS---------- 185 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~---------- 185 (330)
..++.+.+|++++|++.+++.|...+.. +..++.+||+||||+|||++|+.+|+.+.+.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 4567889999999999999999987732 1223568999999999999999999987321
Q ss_pred -------------cEEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCC
Q psy3808 186 -------------TFFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMD 248 (330)
Q Consensus 186 -------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~ 248 (330)
.++.++... ..| -..++.+...+. .....|++||| .+......+..++..++...+
T Consensus 76 C~sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDE-a~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDE-VHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred cHHHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEec-hhhccHHHHHHHHHHHhcCCC
Confidence 111121110 011 112333333322 23456999999 777666666666666666667
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
.+.+|++|+.+..+.+.+++|+ ..+.|.+++.++....++..+...+...++..+..+++.++|..+..+
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~al 218 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDAL 218 (546)
T ss_pred CceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 7777777777888888999999 779999999999998999888888888899999999999988555433
No 76
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.78 E-value=4.4e-17 Score=135.98 Aligned_cols=192 Identities=27% Similarity=0.362 Sum_probs=143.6
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccc
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSD 194 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~ 194 (330)
....++.+++++|.+.+++.|.+.....+ .+.|.+++||||++|||||++++++..++ .|..++.+...+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 34568999999999999999988875443 34566899999999999999999999988 344567666655
Q ss_pred hhccccChhHHHHHHHHHHHH-hcCCeEEEEeC---CcchhhHHHHHHHHhcC-CCCCCcEEEEecCCCCCCcC------
Q psy3808 195 LVSKWLGESEKLVKTLFELAR-AHRPSIIFIDE---RIDRGISNALFLLLSGV-GNDMDGILVLGATNIPWVLD------ 263 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~-~~~~~ii~iDe---~~~~~~~~~l~~~l~~~-~~~~~~v~vi~ttn~~~~l~------ 263 (330)
+.. +..++...+ ...+.|||+|+ ..+......|..++++. ...+++|+|.+|||+-+.+.
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~ 161 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDR 161 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhc
Confidence 532 334444444 23567999999 23355567888888864 45667899999998643221
Q ss_pred -----------------HHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHH----HHHHcCCCCHHHHHHH
Q psy3808 264 -----------------AAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKE----LAKRTEGYSGADISTL 322 (330)
Q Consensus 264 -----------------~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~----la~~~~g~~~~di~~l 322 (330)
-+|..||+..+.|.+|+.++-..|++.++...+..++...+.. -|..-.|.||+--.+.
T Consensus 162 ~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF 241 (249)
T PF05673_consen 162 EDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQF 241 (249)
T ss_pred cCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 1455599999999999999999999999999998888755544 3445677899877776
Q ss_pred Hhh
Q psy3808 323 ERN 325 (330)
Q Consensus 323 ~~~ 325 (330)
+..
T Consensus 242 ~~~ 244 (249)
T PF05673_consen 242 IDD 244 (249)
T ss_pred HHH
Confidence 654
No 77
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.9e-17 Score=156.47 Aligned_cols=197 Identities=21% Similarity=0.262 Sum_probs=141.9
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC--CcEEEecccchhcc-----
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN--STFFSVSSSDLVSK----- 198 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~--~~~~~~~~~~~~~~----- 198 (330)
.|+|+++++..+.+++... ...+...+.|..++||.||+|+|||.||+++|..+.| ..++.+++++++.+
T Consensus 492 rViGQd~AV~avs~aIrra---RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRA---RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred ceeChHHHHHHHHHHHHHH---hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHH
Confidence 4999999999999988432 2334555667778999999999999999999999943 67899999998643
Q ss_pred ccChhHHH-----HHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC--------CCCcEEEEecCCCCC---
Q psy3808 199 WLGESEKL-----VKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN--------DMDGILVLGATNIPW--- 260 (330)
Q Consensus 199 ~~~~~~~~-----~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~~--- 260 (330)
..|.++.+ -..+.+..+..++|||++|| ..+..+.+.|++.++...- +..+++||+|||...
T Consensus 569 LIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i 648 (786)
T COG0542 569 LIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEI 648 (786)
T ss_pred HhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHH
Confidence 22322222 24566778888899999999 3344555666666664321 234689999997531
Q ss_pred -------------------------CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC---------CCCCChHhHHH
Q psy3808 261 -------------------------VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT---------RNTISDENLKE 306 (330)
Q Consensus 261 -------------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~---------~~~~~~~~~~~ 306 (330)
.+.|+|+.|++.+|.|.+.+.+...+|+..++... ...+++.....
T Consensus 649 ~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~ 728 (786)
T COG0542 649 LRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDF 728 (786)
T ss_pred HhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHH
Confidence 14588999999999999999999999987665432 23457777888
Q ss_pred HHHHcC--CCCHHHHHHHHhh
Q psy3808 307 LAKRTE--GYSGADISTLERN 325 (330)
Q Consensus 307 la~~~~--g~~~~di~~l~~~ 325 (330)
|+.... .|-.+-|..++++
T Consensus 729 l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 729 LAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHhccCCCcCchHHHHHHHH
Confidence 887653 3555666665543
No 78
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=8e-18 Score=161.27 Aligned_cols=192 Identities=19% Similarity=0.194 Sum_probs=141.0
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE-----EE
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF-----FS 189 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~-----~~ 189 (330)
+..++.+.+|++|+|++.+++.|...+.. +..++.+||+||+|+|||++|+++|+.+.+..- .+
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 45678899999999999999999998832 223367899999999999999999998732110 00
Q ss_pred eccc-------chh--ccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 190 VSSS-------DLV--SKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 190 ~~~~-------~~~--~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
-.|. ++. ..........++.+.+.+.. ....|++||| .+.....++..++..++.+.+.+++|.+|
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDE-a~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDE-VHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEC-hhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 0000 000 00000112335555555443 3456999999 77766666767777777777788888888
Q ss_pred CCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 257 NIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 257 n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
+.++.+.+++++|+ ..+.|.+++.++....++..+...+...++..+..+|+.+.|-.+..+
T Consensus 156 te~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 156 TEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred CChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 88999999999999 479999999999999999888888877888889999999998655433
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.78 E-value=1.5e-17 Score=149.30 Aligned_cols=186 Identities=20% Similarity=0.173 Sum_probs=131.1
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.+..++.+.+|++++|++++++.+..++. .+..++.++|+||||+|||++|+++++.+ +.+++.++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~-~~~~~~i~~~ 77 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEV-GAEVLFVNGS 77 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHh-CccceEeccC
Confidence 45678889999999999999999998873 12233567779999999999999999998 6778888887
Q ss_pred chhccccChhHHHHHHHHHHHH-hcCCeEEEEeCCcchh----hHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHh
Q psy3808 194 DLVSKWLGESEKLVKTLFELAR-AHRPSIIFIDERIDRG----ISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR 268 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~-~~~~~ii~iDe~~~~~----~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~ 268 (330)
+ .. .......+........ ...+.||+||| ++.. ....+...++.. ..++.+|.+||.+..+.+++++
T Consensus 78 ~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe-~d~l~~~~~~~~L~~~le~~---~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 78 D--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDE-FDRLGLADAQRHLRSFMEAY---SKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred c--cc-HHHHHHHHHHHHHhhcccCCCeEEEEEC-cccccCHHHHHHHHHHHHhc---CCCceEEEEcCChhhchHHHHh
Confidence 6 21 2111122222111111 13568999999 6644 233444445442 3456788899999999999999
Q ss_pred ccccEEEecCCCHHHHHHHHHHH-------hcCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 269 RFEKRIYIALPELNARLFMFRHH-------LGNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 269 Rf~~~i~~~~p~~~~r~~il~~~-------l~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
|| ..+.++.|+.+++..+++.+ +...+..+++..+..+++.+.|-...-+
T Consensus 151 R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l 207 (316)
T PHA02544 151 RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTI 207 (316)
T ss_pred hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 99 56899999999988776543 3345666777788889988877555443
No 80
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=7.5e-18 Score=159.25 Aligned_cols=189 Identities=20% Similarity=0.186 Sum_probs=138.9
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-------- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-------- 186 (330)
+..++.+.+|++|+|++.+++.|...+.. . .-.+.+||+||||||||++|+.+|+.+.+..
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQE----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHc----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 44678899999999999999999988832 1 2225899999999999999999999883210
Q ss_pred ---------------EEEecccchhccccChhHHHHHHHHHH----HHhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 187 ---------------FFSVSSSDLVSKWLGESEKLVKTLFEL----ARAHRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 187 ---------------~~~~~~~~~~~~~~~~~~~~~~~~f~~----a~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
++.++...- . .-..++.+.+. .......||+||| ++......+..++..++...
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~~----~--~Id~iR~L~~~~~~~p~~g~~kVIIIDE-ad~Lt~~a~naLLk~LEEP~ 147 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGASN----R--GIDDAKRLKEAIGYAPMEGRYKVFIIDE-AHMLTREAFNALLKTLEEPP 147 (624)
T ss_pred ccHHHHHHhcCCCCceEEEecccc----c--CHHHHHHHHHHHHhhhhcCCceEEEEEC-hHhCCHHHHHHHHHHhhccC
Confidence 222222110 0 01122222222 2233457999999 77766666666666666565
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
..+++|++|+.+..+.+.+++|+ ..+.|++++.++...+++..+...+..+++..+..|++.+.|..+..|..+
T Consensus 148 ~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lL 221 (624)
T PRK14959 148 ARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLL 221 (624)
T ss_pred CCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67888888888888999999999 568999999999999999988888877899999999999998766555544
No 81
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=8.7e-18 Score=165.04 Aligned_cols=187 Identities=18% Similarity=0.142 Sum_probs=137.2
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..++.+.+|++|+|++.+++.|...+.. +...+.+||+||+|||||++|+.||+.+.+.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 44678899999999999999999988732 2223569999999999999999999998421
Q ss_pred ----------------cEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCc
Q psy3808 186 ----------------TFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDG 249 (330)
Q Consensus 186 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~ 249 (330)
.|+.++.... ..+.........++.........|+|||| .|......+..++..+++....
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~~~p~~~~~KV~IIDE-ad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASH--GGVDDARELRERAFFAPAESRYKIFIIDE-AHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEec-hhhcCHHHHHHHHHHHhCCCCC
Confidence 0111211110 00111122222222222334567999999 8877777777777777776678
Q ss_pred EEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 250 ILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 250 v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
++||++|+.++.+.+.|++|+ ..+.|..++..+...+++..+...++.+++..+..|++.+.|...
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred eEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 888888888888999999999 679999999999999999999888888888889999999988443
No 82
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=6.2e-18 Score=159.93 Aligned_cols=190 Identities=19% Similarity=0.216 Sum_probs=140.2
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-------- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-------- 186 (330)
+..++.+.+|++++|++.+++.|..++.. +..++.+||+||||+|||++|+++|+.+.+..
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34567889999999999999999988742 22335689999999999999999999983311
Q ss_pred ---------------EEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 187 ---------------FFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 187 ---------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
++.++.+. ...-..++.+...+.. ....|++||| .+......+..++..++...
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDE-ad~ls~~a~naLLK~LEepp 147 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDE-VHMLSKSAFNAMLKTLEEPP 147 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcC-cccCCHHHHHHHHHHHhCCC
Confidence 11111110 1112345555554432 2346999999 87776666666777776666
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
+.+.+|.+|+.+..+.+.+++|+ ..+.|+.++.++....+...+...+...++..+..|++.++|..+ ++.+++.
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr-~al~lld 222 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMR-DALSLLD 222 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 77888888888888888899999 669999999999998888888877777888899999999988655 4444444
No 83
>KOG2028|consensus
Probab=99.77 E-value=7e-18 Score=145.89 Aligned_cols=186 Identities=28% Similarity=0.419 Sum_probs=131.6
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--EEEecccch
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--FFSVSSSDL 195 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--~~~~~~~~~ 195 (330)
.-.+.+++|++|++.+... .-.+...+ .....| +++||||||||||+||+.|+....... |+.+++..-
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~i------eq~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLI------EQNRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHH------HcCCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 3457889999999887654 11111111 223344 899999999999999999999873222 555555332
Q ss_pred hccccChhHHHHHHHHHHHHh-----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecC--CCCCCcCHHHHh
Q psy3808 196 VSKWLGESEKLVKTLFELARA-----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGAT--NIPWVLDAAIRR 268 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~-----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt--n~~~~l~~~l~~ 268 (330)
....++.+|+.+.. ....|||||| +++........++..++. ..|++||+| |+...++.+|++
T Consensus 202 -------~t~dvR~ife~aq~~~~l~krkTilFiDE-iHRFNksQQD~fLP~VE~--G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 202 -------KTNDVRDIFEQAQNEKSLTKRKTILFIDE-IHRFNKSQQDTFLPHVEN--GDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred -------chHHHHHHHHHHHHHHhhhcceeEEEeHH-hhhhhhhhhhcccceecc--CceEEEecccCCCccchhHHHHh
Confidence 24467788887764 3457999999 887777666666666554 458888887 777899999999
Q ss_pred ccccEEEecCCCHHHHHHHHHHHhc------C----CCC---CCChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 269 RFEKRIYIALPELNARLFMFRHHLG------N----TRN---TISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 269 Rf~~~i~~~~p~~~~r~~il~~~l~------~----~~~---~~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
|| .++.+.....+....|+.+.+. + .+. .+++-.++.|+..+.|.....|+.|.
T Consensus 272 RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Le 338 (554)
T KOG2028|consen 272 RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALE 338 (554)
T ss_pred cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHH
Confidence 99 6677888888888888876332 1 111 24556789999999999988887764
No 84
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=8.9e-18 Score=160.65 Aligned_cols=187 Identities=21% Similarity=0.238 Sum_probs=140.6
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-------- 186 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-------- 186 (330)
+..++.+.+|++|+|++++++.|...+.. +..++.+||+||+|+|||++|+++++.+.+..
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 34678889999999999999999988732 22346789999999999999999999983211
Q ss_pred ---------------EEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 187 ---------------FFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 187 ---------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
++.++... ...-..++.+...+.. ....|++||| .+......+..++..++.+.
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIde-v~~Lt~~a~naLLk~LEepp 147 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDE-VHMLSTNAFNALLKTLEEPP 147 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEC-hhhCCHHHHHHHHHHHHcCC
Confidence 11121111 1112234555444432 2345999999 77776666666777666677
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHH
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~ 320 (330)
+.++||.+|+.++.+.+.+++|+ ..+.|..++..+....++..+...+..+++..+..+++.++|..+..+.
T Consensus 148 ~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~ 219 (576)
T PRK14965 148 PHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLS 219 (576)
T ss_pred CCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 78888888899999999999999 5689999999999988998888888888999999999999986554433
No 85
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.76 E-value=4e-17 Score=147.87 Aligned_cols=185 Identities=19% Similarity=0.213 Sum_probs=129.8
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC----CcEEEe
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN----STFFSV 190 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~----~~~~~~ 190 (330)
+..++.+.+|++++|.+++++.+..++.. ... .+++|+||||||||++|+++++++.+ .+++.+
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~----------~~~--~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDS----------PNL--PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhC----------CCC--ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 55678899999999999999999987732 112 36999999999999999999998832 246777
Q ss_pred cccchhcccc-------------Ch-------hHHHHHHHHHHHHh-----cCCeEEEEeCCcchh---hHHHHHHHHhc
Q psy3808 191 SSSDLVSKWL-------------GE-------SEKLVKTLFELARA-----HRPSIIFIDERIDRG---ISNALFLLLSG 242 (330)
Q Consensus 191 ~~~~~~~~~~-------------~~-------~~~~~~~~f~~a~~-----~~~~ii~iDe~~~~~---~~~~l~~~l~~ 242 (330)
++.++...+. +. ....++.+...... ..+.+|+||| .+.. ..+.+...++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe-~~~l~~~~~~~L~~~le~ 151 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDN-AEALREDAQQALRRIMEQ 151 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeC-cccCCHHHHHHHHHHHHh
Confidence 7766532210 00 01122222222222 2346999999 6533 34455555554
Q ss_pred CCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 243 VGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 243 ~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
.. ..+.+|.+++.+..+.+.+.+|+ ..+.+++|+..+...+++..+...+..+++..+..|+..+.|...
T Consensus 152 ~~---~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr 221 (337)
T PRK12402 152 YS---RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLR 221 (337)
T ss_pred cc---CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 32 23445556666667778899998 668999999999999999999988888899999999999976444
No 86
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2.4e-17 Score=154.21 Aligned_cols=192 Identities=20% Similarity=0.186 Sum_probs=139.6
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..++.+.+|++++|++.+++.|...+.. +..++.+|||||+|+|||++|+++++.+.+.
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 34578889999999999999999988731 2233568999999999999999999987211
Q ss_pred --------------cEEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 186 --------------TFFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 186 --------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
.++.++...- ..-..++.+...... ....|++||| .+.....++..++..++.+.
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDE-ad~Lt~~A~NALLK~LEEpp 145 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDE-VHMLTKEAFNALLKTLEEPP 145 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEEC-cccCCHHHHHHHHHHHhhcC
Confidence 1222221110 012334444443221 2235999999 77666666666666666666
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
+.+.+|.+|+.+..+.+++++|+ ..+.|.+++.++....++..+...+..+++..+..|++.++| +.+++.+++..+
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqa 222 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQA 222 (535)
T ss_pred CceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 67777777788899999999998 579999999999999999999888888899999999999998 444555555443
No 87
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=3.4e-17 Score=155.44 Aligned_cols=196 Identities=22% Similarity=0.200 Sum_probs=140.9
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC------cE-
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS------TF- 187 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~------~~- 187 (330)
+..++.+.+|++|+|++.+++.|...+.. +..++.+||+||||+|||++|+++|+.+.+. +.
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 34578899999999999999999988832 2233679999999999999999999998321 11
Q ss_pred EEecccchhcc-------ccCh---hHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEE
Q psy3808 188 FSVSSSDLVSK-------WLGE---SEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 188 ~~~~~~~~~~~-------~~~~---~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi 253 (330)
.+.+|..+... +-|. .-..++.+.+.+. .....|++||| .+.....++..++..+..+...+++|
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDE-a~~Ls~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDE-VHMLSNSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEC-hhhcCHHHHHHHHHhhccCCCCEEEE
Confidence 01111111000 0011 1123334433222 24556999999 77776666667777777777788888
Q ss_pred ecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 254 GATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
++|+.+..+.+++++|+. .+.|.+++.++....++..+...+..+++..+..|++.+.|..+ ++.+++.
T Consensus 154 ~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR-~alslLd 222 (563)
T PRK06647 154 FATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVR-DAYTLFD 222 (563)
T ss_pred EecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 888888899999999994 68999999999999999998888888899999999999998544 4444443
No 88
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.6e-17 Score=155.40 Aligned_cols=197 Identities=18% Similarity=0.167 Sum_probs=138.4
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC------cE-
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS------TF- 187 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~------~~- 187 (330)
+..++.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+.+|..+.+. |+
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 34577889999999999999999988832 2233568999999999999999999988421 11
Q ss_pred EEecccchhcc-----c-----cChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEE
Q psy3808 188 FSVSSSDLVSK-----W-----LGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 188 ~~~~~~~~~~~-----~-----~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi 253 (330)
.+.+|..+... + ....-..++.+...+.. ..+.|++||| .+......+..++..+..+...+++|
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDE-ad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDE-AHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEC-hhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 11111111110 0 00112234444444332 3456999999 77666655556666666665667777
Q ss_pred ecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 254 GATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
.+|+.++.+.+++.+|+. .+.|++|+..+....++..+...+..+++..+..|+..++|-.+ ++.++++.
T Consensus 154 l~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr-~al~~Ldk 223 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMR-DAASLLDQ 223 (486)
T ss_pred EEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHH
Confidence 777778888899999994 69999999999999999999988888888999999999987544 44444443
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.76 E-value=3.3e-17 Score=151.73 Aligned_cols=184 Identities=26% Similarity=0.341 Sum_probs=128.9
Q ss_pred ccCCCCCcccccchHHHHHH---HHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 117 MEKPNVKWTDVAGLEAAKEA---LKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
..+.+.+|++++|++++... +...+.. . ...+++|+||||||||++|+++++.+ +..|+.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~----------~--~~~~ilL~GppGtGKTtLA~~ia~~~-~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA----------G--RLSSMILWGPPGTGKTTLARIIAGAT-DAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc----------C--CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecc
Confidence 34567889999999999766 7776621 1 12489999999999999999999998 6788888775
Q ss_pred chhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecC--CCCCCcCHHHH
Q psy3808 194 DLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGAT--NIPWVLDAAIR 267 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt--n~~~~l~~~l~ 267 (330)
.. ....++.++..+. .....|||||| ++.........++..+.. ..+++|++| |....++++++
T Consensus 71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDE-i~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDE-IHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred cc-------cHHHHHHHHHHHHHhhhcCCceEEEEec-hhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHh
Confidence 32 1223344444332 23568999999 775544333333333332 346666654 44468899999
Q ss_pred hccccEEEecCCCHHHHHHHHHHHhcCC--CC-CCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 268 RRFEKRIYIALPELNARLFMFRHHLGNT--RN-TISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 268 ~Rf~~~i~~~~p~~~~r~~il~~~l~~~--~~-~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
+|| ..+.|++++.++...+++..+... +. .+++..+..+++.+.|.....+ +++..
T Consensus 141 SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~al-n~Le~ 199 (413)
T PRK13342 141 SRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRAL-NLLEL 199 (413)
T ss_pred ccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHH-HHHHH
Confidence 999 779999999999999998877542 33 5788889999999977655443 44433
No 90
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=4.2e-17 Score=151.61 Aligned_cols=190 Identities=19% Similarity=0.164 Sum_probs=133.6
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--------E
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--------F 187 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--------~ 187 (330)
..++.+.+|+||+|++.+++.|...+.. +..++.+||+||||+|||++|+++|+.+.+.. -
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 3457789999999999999999988732 22336799999999999999999999873210 0
Q ss_pred EEecccchhc-------cccCh---hHHHHHHHHHHH----HhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEE
Q psy3808 188 FSVSSSDLVS-------KWLGE---SEKLVKTLFELA----RAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 188 ~~~~~~~~~~-------~~~~~---~~~~~~~~f~~a----~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi 253 (330)
.+.+|..+.. .+-|. .-..++.+.+.. ......||+||| .+.........++..+....+.+++|
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIde-ad~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDE-VHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred ccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEec-HHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 1111111100 00010 012233222222 224567999999 77665555555555555566678888
Q ss_pred ecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 254 GATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
++|+.+..+.+++++|+ ..+.|+.++.++....++..+...+..+++..+..|+..++|..+..
T Consensus 156 l~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 156 LATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred EEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 88888889999999999 56999999999999999988888887789999999999998855433
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.75 E-value=3.6e-17 Score=149.24 Aligned_cols=188 Identities=21% Similarity=0.262 Sum_probs=136.1
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS---------- 185 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~---------- 185 (330)
..++++.+|++++|++.+++.+...+.. +..++.+||+||||+|||++|++++..+.+.
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567889999999999999999987732 2233679999999999999999999987321
Q ss_pred -------------cEEEecccchhccccChhHHHHHHHHHHHHhc----CCeEEEEeCCcchhhHHHHHHHHhcCCCCCC
Q psy3808 186 -------------TFFSVSSSDLVSKWLGESEKLVKTLFELARAH----RPSIIFIDERIDRGISNALFLLLSGVGNDMD 248 (330)
Q Consensus 186 -------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~----~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~ 248 (330)
.++.+++.. ......++.++..+... ...||+||| .+......+..++..+.....
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviide-a~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDE-VHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeC-hhhcCHHHHHHHHHHHhCCcc
Confidence 112222210 11223455566554432 345999999 765555555555555555556
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
.+++|.+|+.+..+.+++.+|+ ..+.|++|+..+...+++..+...+..+++..+..|+..++|..+ .+.+.+
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~-~a~~~l 219 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLR-DALSLL 219 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChH-HHHHHH
Confidence 7777778888888889999999 568999999999999999999888888898999999999988544 343333
No 92
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.75 E-value=4e-17 Score=154.88 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=136.8
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CC
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NN 184 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~ 184 (330)
.+...+.+.+|++++|.+...+.+...+.. ..+.+++|+||||||||++|++++..+ .+
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 344556779999999999999998865421 123589999999999999999998653 13
Q ss_pred CcEEEecccch--hc-----cccChhHHHH---HHHHH----------HHHhcCCeEEEEeC--CcchhhHHHHHHHHhc
Q psy3808 185 STFFSVSSSDL--VS-----KWLGESEKLV---KTLFE----------LARAHRPSIIFIDE--RIDRGISNALFLLLSG 242 (330)
Q Consensus 185 ~~~~~~~~~~~--~~-----~~~~~~~~~~---~~~f~----------~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~ 242 (330)
.+|+.+++... .. ...+....-+ ...|. .......++||||| .++...++.|+..++.
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~ 201 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLED 201 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHh
Confidence 57888887531 11 1111000000 00000 11122347999999 3344556666666543
Q ss_pred CC--------------------------CCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCC
Q psy3808 243 VG--------------------------NDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTR 296 (330)
Q Consensus 243 ~~--------------------------~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~ 296 (330)
-. .+.+-.++++||+.|+.+++++++|| ..+.|++++.+++..|++..+.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~ 280 (531)
T TIGR02902 202 RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIG 280 (531)
T ss_pred CeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcC
Confidence 10 01112345566788999999999999 5688999999999999999999888
Q ss_pred CCCChHhHHHHHHHcCCCCHHHHHHHHhhcc
Q psy3808 297 NTISDENLKELAKRTEGYSGADISTLERNFK 327 (330)
Q Consensus 297 ~~~~~~~~~~la~~~~g~~~~di~~l~~~a~ 327 (330)
..+++..+..|+..+. +++++.++++.|.
T Consensus 281 i~is~~al~~I~~y~~--n~Rel~nll~~Aa 309 (531)
T TIGR02902 281 INLEKHALELIVKYAS--NGREAVNIVQLAA 309 (531)
T ss_pred CCcCHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 8889988988887664 7899999998875
No 93
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75 E-value=5.4e-17 Score=161.22 Aligned_cols=185 Identities=22% Similarity=0.260 Sum_probs=136.9
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcE
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTF 187 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~ 187 (330)
....+-++++++|.++..+.+.+.+.. ...++++|+||||||||++|+.+|..+ .+..+
T Consensus 179 ~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i 246 (852)
T TIGR03345 179 AQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRL 246 (852)
T ss_pred HHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeE
Confidence 344567899999999987777765521 122589999999999999999999986 23456
Q ss_pred EEecccchh--ccccChhHHHHHHHHHHHHh-cCCeEEEEeCCcchhhH-------HHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 188 FSVSSSDLV--SKWLGESEKLVKTLFELARA-HRPSIIFIDERIDRGIS-------NALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 188 ~~~~~~~~~--~~~~~~~~~~~~~~f~~a~~-~~~~ii~iDe~~~~~~~-------~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+.++.+.+. ..+.|+.+..++.++..+.. ..++|||||| ++.... .....++..... ...+.+||||+
T Consensus 247 ~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDE-ih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT 324 (852)
T TIGR03345 247 LSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDE-AHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATT 324 (852)
T ss_pred EEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeC-hHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecC
Confidence 777777765 36788899999999998865 4678999999 543321 111112222222 25688999997
Q ss_pred CC-----CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC----CCCCCChHhHHHHHHHcCCCCH
Q psy3808 258 IP-----WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN----TRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 258 ~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~~~g~~~ 316 (330)
.. ...|++|.|||. .|.++.|+.+++..|++.+... +++.+++..+..++..+.+|.+
T Consensus 325 ~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred HHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 64 358999999995 7999999999999997655533 3456789999999999998854
No 94
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=4.8e-17 Score=155.09 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=142.5
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc-E------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-F------ 187 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~-~------ 187 (330)
+..++.+.+|++|+|++.+++.|...+.. +..++++||+||+|+|||++|+++|+.+.+.. .
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 44678889999999999999999988732 23346899999999999999999999883211 0
Q ss_pred -----EEecccchhccc------c----ChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCC
Q psy3808 188 -----FSVSSSDLVSKW------L----GESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMD 248 (330)
Q Consensus 188 -----~~~~~~~~~~~~------~----~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~ 248 (330)
.+-+|..+.... + ...-..++.+...+.. ....||+||| .+......+..++..+++..+
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDE-ad~Ls~~a~naLLKtLEePp~ 161 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDE-VHMLSTAAFNALLKTLEEPPP 161 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEC-hHhCCHHHHHHHHHHHHhCCC
Confidence 011111111100 0 0012345555554443 3456999999 777666666667777766667
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
.+.||.+|+.+..+.+.+++|+ ..+.|..++..+....++..+...+..+++..+..|++.++|... ++.+++..
T Consensus 162 ~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr-~al~~Ldk 236 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVR-DGLSLLDQ 236 (598)
T ss_pred CeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHH
Confidence 7888778888888889999999 569999999999999999999988888899999999999998554 44444433
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.75 E-value=4.8e-17 Score=158.77 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=141.8
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcEE
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTFF 188 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~~ 188 (330)
.-..-.++.++|.++..+.+.+.+.. ...+++||+||||||||++|++++..+ .+..++
T Consensus 179 ~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~ 246 (758)
T PRK11034 179 LARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_pred HHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE
Confidence 33456788899999988888876632 122578999999999999999999875 134556
Q ss_pred Eecccchh--ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------hHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 189 SVSSSDLV--SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------ISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
.++...+. .+|.|+.+..++.++..+....++|||||| ++.. ....+..++..+... ..+.+|++|+.
T Consensus 247 ~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDE-Ih~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE-IHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred eccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEecc-HHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 66666655 467888899999999988888889999999 5422 122233333333222 56899999987
Q ss_pred CC-----CcCHHHHhccccEEEecCCCHHHHHHHHHHHhc----CCCCCCChHhHHHHHHHcCCCC-----HHHHHHHHh
Q psy3808 259 PW-----VLDAAIRRRFEKRIYIALPELNARLFMFRHHLG----NTRNTISDENLKELAKRTEGYS-----GADISTLER 324 (330)
Q Consensus 259 ~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----~~~~~~~~~~~~~la~~~~g~~-----~~di~~l~~ 324 (330)
++ ..|++|.|||+ .|.++.|+.+++..|++.+.. .+++.+++..+...+..+..|. +...-.++.
T Consensus 325 ~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlld 403 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 403 (758)
T ss_pred HHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHH
Confidence 64 57999999995 799999999999999986543 3455678888887777666543 345556666
Q ss_pred hcc
Q psy3808 325 NFK 327 (330)
Q Consensus 325 ~a~ 327 (330)
+|.
T Consensus 404 ea~ 406 (758)
T PRK11034 404 EAG 406 (758)
T ss_pred HHH
Confidence 554
No 96
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.7e-17 Score=153.27 Aligned_cols=198 Identities=20% Similarity=0.214 Sum_probs=154.1
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc------E-
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST------F- 187 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~------~- 187 (330)
+..+|.+.+|+|++|++.+.+.|...+.. +.-.++++|+||.|||||++|+.+|..+++.. +
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 45678999999999999999999998842 22236899999999999999999999984331 1
Q ss_pred EEecccchhcc-cc---------ChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEE
Q psy3808 188 FSVSSSDLVSK-WL---------GESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 188 ~~~~~~~~~~~-~~---------~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi 253 (330)
.+.+|..+... ++ ...-..++.+.+.+. ...+-|++||| .+......+..++..++.++..|.+|
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDE-vHMLS~~afNALLKTLEEPP~hV~FI 153 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDE-VHMLSKQAFNALLKTLEEPPSHVKFI 153 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEec-HHhhhHHHHHHHhcccccCccCeEEE
Confidence 11122222111 11 111233455544443 24456999999 99999999999999999999999999
Q ss_pred ecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 254 GATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
.+|..+..+++.++||+ ..+.|...+.++....+..++.+.++..++..+..+|+.++|-.. |...+..+|
T Consensus 154 lATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~R-DalslLDq~ 224 (515)
T COG2812 154 LATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLR-DALSLLDQA 224 (515)
T ss_pred EecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChh-hHHHHHHHH
Confidence 99999999999999999 558999999999999999999999999999999999999998444 555555544
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=6.9e-17 Score=147.80 Aligned_cols=182 Identities=18% Similarity=0.195 Sum_probs=132.1
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------c
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS---------T 186 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~---------~ 186 (330)
..++.+.+|++++|++.+++.+...+.. +..++++|||||||+|||++|+++++.+.+. +
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567899999999999999999988832 2334689999999999999999999988321 0
Q ss_pred --EEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 187 --FFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 187 --~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
++.++.. .......++.++..+.. ..+.||+||| .+......+..++..+......+++|.+++.+.
T Consensus 77 ~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE-~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 77 FNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE-VHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred cceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeC-hhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 1111111 11112445555554432 2456999999 765554444444444444445566666777788
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
.+.+++.+|+ ..+.+++|+..+...++...+...+..+++..+..|+..+.|..+
T Consensus 150 kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 150 KIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALR 204 (367)
T ss_pred cCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHH
Confidence 8999999998 568999999999999999988888888899999999999887444
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=6.5e-17 Score=148.82 Aligned_cols=188 Identities=17% Similarity=0.174 Sum_probs=131.9
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEE-------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFF------- 188 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~------- 188 (330)
...+.+.+|++|+|++.+++.|...+. .+..++.+||+||||+|||++|+++|+.+.+....
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 456788999999999999999988773 12233679999999999999999999998432100
Q ss_pred --------Eecccchhc-------cccC---hhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCC
Q psy3808 189 --------SVSSSDLVS-------KWLG---ESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGND 246 (330)
Q Consensus 189 --------~~~~~~~~~-------~~~~---~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~ 246 (330)
+-+|..+.. .+-+ ..-..++.+.+.+. .....|++||| .+.........++..+++.
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIde-a~~l~~~~~~~LLk~LEep 154 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDE-VHMLSIAAFNAFLKTLEEP 154 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeC-hhhCCHHHHHHHHHHHhcC
Confidence 000000000 0001 01233444433332 22345999999 7766555555555555566
Q ss_pred CCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 247 MDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 247 ~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
.+.+++|.+|+.+..+.+++.+|+ ..+.|++++.++....++..+...+..+++..+..|+..++|..+
T Consensus 155 ~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 155 PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMR 223 (397)
T ss_pred CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 566777777777788888999998 468999999999998899888888878899999999999998554
No 99
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.73 E-value=9.3e-17 Score=160.04 Aligned_cols=183 Identities=21% Similarity=0.304 Sum_probs=134.3
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcEE
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTFF 188 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~~ 188 (330)
...+-.+++++|.+...+.+.+.+.. ...++++|+||||||||++|+++|..+ .+.+++
T Consensus 171 ~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 34567889999999987777765521 223579999999999999999999987 246778
Q ss_pred Eecccchh--ccccChhHHHHHHHHHHHH-hcCCeEEEEeCCcchhhHH-------HHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 189 SVSSSDLV--SKWLGESEKLVKTLFELAR-AHRPSIIFIDERIDRGISN-------ALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~f~~a~-~~~~~ii~iDe~~~~~~~~-------~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
.++...+. .+|.|+.+..++.+|.... ...++|||||| ++..... ....++..... .+.+.+||+|+.
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDE-ih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~ 316 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE-LHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTL 316 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEec-HHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCC
Confidence 88777765 4578888999999998754 35688999999 5533210 11122222222 256899999987
Q ss_pred CC-----CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC----CCCCChHhHHHHHHHcCCCC
Q psy3808 259 PW-----VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT----RNTISDENLKELAKRTEGYS 315 (330)
Q Consensus 259 ~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~----~~~~~~~~~~~la~~~~g~~ 315 (330)
++ ..|+++.|||+ .|.++.|+.+++..|++.+.... ++.+++..+...+..+.+|.
T Consensus 317 ~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred HHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 75 48999999996 58899999999999998776442 34567777777777776664
No 100
>KOG2004|consensus
Probab=99.73 E-value=1e-15 Score=142.71 Aligned_cols=193 Identities=24% Similarity=0.326 Sum_probs=138.6
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh---------
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV--------- 196 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~--------- 196 (330)
|-.|++++|+.+.+++.-... .+.....-+||+||||+|||++++.||..+ +..|++++...+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~AL-nRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARAL-NRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHh-CCceEEEeccccccHHhhcccc
Confidence 567999999999998843221 112223459999999999999999999999 8999999886553
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-------hHHHHHHHHhcCC------------CCCCcEEEEecCC
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG-------ISNALFLLLSGVG------------NDMDGILVLGATN 257 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-------~~~~l~~~l~~~~------------~~~~~v~vi~ttn 257 (330)
..|+|.-+..+-+....+....| +++||| +|+. -..+|+.+++.-. -+..+|+||+|.|
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDE-vDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDE-VDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeeh-hhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 24777777777777777777788 888999 6533 2356666665321 2335799999999
Q ss_pred CCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC-----C-----CCCChHhHHHHHHHcCCCC-----HHHHHHH
Q psy3808 258 IPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT-----R-----NTISDENLKELAKRTEGYS-----GADISTL 322 (330)
Q Consensus 258 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~-----~-----~~~~~~~~~~la~~~~g~~-----~~di~~l 322 (330)
..+.++++|+.|+ ..|.++-+..++...|-+.+|-.. + +.+++..+..|-+..-.=+ -..|..+
T Consensus 563 ~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI 641 (906)
T KOG2004|consen 563 VIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKI 641 (906)
T ss_pred ccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999 779999999999999988876432 2 2344444444433221111 1567777
Q ss_pred Hhhccc
Q psy3808 323 ERNFKV 328 (330)
Q Consensus 323 ~~~a~~ 328 (330)
||.+++
T Consensus 642 ~Rk~Al 647 (906)
T KOG2004|consen 642 CRKVAL 647 (906)
T ss_pred HHHHHH
Confidence 777665
No 101
>PRK06893 DNA replication initiation factor; Validated
Probab=99.73 E-value=2.7e-16 Score=134.13 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=116.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV 196 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~ 196 (330)
.+..+|++++|.+... .+...... +... ....++||||||||||+|++++|+++ .+.....++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~~--~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKN-------FIDL--QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHH-------hhcc--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4678999999765432 11111110 1111 11368999999999999999999986 22344444443211
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcC---HHHHh
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPWVLD---AAIRR 268 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~---~~l~~ 268 (330)
. ....++... ....+|+||| ++. .....+..+++........+++++++..|..++ +.+.+
T Consensus 80 ~--------~~~~~~~~~--~~~dlLilDD-i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s 148 (229)
T PRK06893 80 Y--------FSPAVLENL--EQQDLVCLDD-LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS 148 (229)
T ss_pred h--------hhHHHHhhc--ccCCEEEEeC-hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH
Confidence 1 111222222 2457999999 553 223456666665544323355666666665544 88999
Q ss_pred ccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 269 RFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 269 Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
|+. ..+.+++|+.+++..|++..+...+..+++..+..|++..+|....
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~ 199 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHT 199 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 764 5789999999999999999998888889999999999999986654
No 102
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.73 E-value=2.7e-16 Score=141.39 Aligned_cols=186 Identities=25% Similarity=0.255 Sum_probs=130.9
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----cEEE
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS----TFFS 189 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~----~~~~ 189 (330)
.+..++.+.+|++++|.+++++.+..++.. ... .+++|+||||||||++++++++.+.+. .++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~----------~~~--~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKE----------KNM--PHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhC----------CCC--CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 355678889999999999999999988732 122 268999999999999999999987322 2344
Q ss_pred ecccchhccccChhHHHH-HHHHHHHHh-----cCCeEEEEeCCcchhh---HHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 190 VSSSDLVSKWLGESEKLV-KTLFELARA-----HRPSIIFIDERIDRGI---SNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~-~~~f~~a~~-----~~~~ii~iDe~~~~~~---~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
+++++..+ ...+ ..+...+.. ..+.+|+||| ++... ...+...++.. ...+.+|.++|.+.
T Consensus 74 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe-~~~l~~~~~~~L~~~le~~---~~~~~lIl~~~~~~ 143 (319)
T PRK00440 74 LNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDE-ADNLTSDAQQALRRTMEMY---SQNTRFILSCNYSS 143 (319)
T ss_pred eccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeC-cccCCHHHHHHHHHHHhcC---CCCCeEEEEeCCcc
Confidence 44332111 1111 122222221 2346999999 65443 34455555442 23455666777777
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
.+.+++.+|+. .+.|++++.++...+++..+...+..+++..+..+++.+.|..+..+..+
T Consensus 144 ~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 144 KIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred ccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88888999984 58999999999999999999988888899999999999998666544444
No 103
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.2e-16 Score=150.74 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=135.9
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE--------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF-------- 187 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~-------- 187 (330)
...+.+.+|++|+|++.+++.|+..+.. +.-++++||+||+|||||++|+.+|+.+.+...
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 4567899999999999999999987731 223367999999999999999999999843110
Q ss_pred -------EEecccchhc-------cccCh---hHHHHHHHHHHH----HhcCCeEEEEeCCcchhhHHHHHHHHhcCCCC
Q psy3808 188 -------FSVSSSDLVS-------KWLGE---SEKLVKTLFELA----RAHRPSIIFIDERIDRGISNALFLLLSGVGND 246 (330)
Q Consensus 188 -------~~~~~~~~~~-------~~~~~---~~~~~~~~f~~a----~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~ 246 (330)
.+-+|..+.. .+-+. .-..++.+.+.. .....-|++||| .+......+..++..++..
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdE-ad~Lt~~a~naLLK~LEeP 154 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDE-VHMLSTAAFNAFLKTLEEP 154 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeC-hhhcCHHHHHHHHHHHhCC
Confidence 0001111100 00110 123344443333 223456999999 7777666666777777766
Q ss_pred CCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 247 MDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 247 ~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
.+.+++|.+|+.+..+.+++.+|+ ..+.|.+++..+....++..+...+..+++..+..|+..+.|..+..
T Consensus 155 p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 155 PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 666777777777788989999999 67999999999998888888888787789999999999999855533
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.72 E-value=4.6e-16 Score=133.13 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=117.9
Q ss_pred CCCCCccccc-c-hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccc
Q psy3808 119 KPNVKWTDVA-G-LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSD 194 (330)
Q Consensus 119 ~~~~~~~~~~-G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~ 194 (330)
.+..+|++++ | +..+...+...... ....+++||||||||||+|++++++.+. +..+..++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3456788887 3 55666666665421 1124799999999999999999998762 33445555544
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCCC---cCHHH
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPWV---LDAAI 266 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~---l~~~l 266 (330)
.... ...+.+... ...+|+||| ++. .....+..++..........++++++++|.. +.|.+
T Consensus 84 ~~~~--------~~~~~~~~~--~~dlliiDd-i~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 84 RAWF--------VPEVLEGME--QLSLVCIDN-IECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred Hhhh--------hHHHHHHhh--hCCEEEEeC-hhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 3211 111111111 125899999 543 3344555555554332222455555566654 57999
Q ss_pred Hhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 267 RRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 267 ~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
++|+. .++.+.+|+.+++.++++..+...+..+++..+..|++..+|-.+.
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT 205 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHH
Confidence 99985 6799999999999999998787778889999999999999986553
No 105
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.3e-16 Score=151.36 Aligned_cols=190 Identities=22% Similarity=0.175 Sum_probs=136.1
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEE------E
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFF------S 189 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~------~ 189 (330)
..++.+.+|++++|++.+++.|...+.. . ...+++||+||+|+|||++|+++|+.+.+.... +
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALIS----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHc----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 3567789999999999999999988842 1 122589999999999999999999998431100 0
Q ss_pred ecc---cchh----------ccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEE
Q psy3808 190 VSS---SDLV----------SKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILV 252 (330)
Q Consensus 190 ~~~---~~~~----------~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~v 252 (330)
-.| ..+. .......-..++.+...+.. ....||+||| .+......+..++..++.....+++
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDE-ad~Lt~~a~naLLK~LEePp~~tvf 154 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDE-CHMLSTAAFNALLKTLEEPPPRVVF 154 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEEC-ccccCHHHHHHHHHHHhcCCcCeEE
Confidence 000 0000 00011123455666555443 2346999999 7766655566666666666677888
Q ss_pred EecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 253 LGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 253 i~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
|++|+.+..+.+++++|+ ..+.|+.++.++....+...+.+.+..+++..+..+++.+.|..+..
T Consensus 155 IL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 155 VLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDA 219 (620)
T ss_pred EEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHH
Confidence 888888888999999999 56899999998888888888888777788888999999999866533
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.71 E-value=2.7e-16 Score=156.91 Aligned_cols=179 Identities=25% Similarity=0.350 Sum_probs=138.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC---------CCcEEE
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN---------NSTFFS 189 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~---------~~~~~~ 189 (330)
...-.++.++|.++.++.+.+.+.. ...++++|+||||||||++|+.+|..+. +.+++.
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 3456788999999999999987732 2346899999999999999999999862 367888
Q ss_pred ecccchh--ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh-----------HHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 190 VSSSDLV--SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI-----------SNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 190 ~~~~~~~--~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~-----------~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
+++..+. .+|.|+.+..++.+++.+....++|||||| ++... .+.|...+. ...+.+|++|
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDE-ih~l~~~g~~~g~~~~a~lLkp~l~-----rg~l~~IgaT 314 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDE-VHTLIGAGAAEGAIDAANILKPALA-----RGELQCIGAT 314 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEec-HHHHhcCCCCCCcccHHHHhHHHHh-----CCCcEEEEeC
Confidence 9988876 478899999999999998888889999999 54221 222222222 1458888888
Q ss_pred CCCC-----CcCHHHHhccccEEEecCCCHHHHHHHHHHHhc----CCCCCCChHhHHHHHHHcCCCCH
Q psy3808 257 NIPW-----VLDAAIRRRFEKRIYIALPELNARLFMFRHHLG----NTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 257 n~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
+..+ ..++++.+||. .+.++.|+.++...|++.... ..+..+++..+..++..+.+|.+
T Consensus 315 t~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred CHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 8663 57899999995 589999999999888875432 23445788889999999998865
No 107
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.71 E-value=2.9e-16 Score=152.61 Aligned_cols=186 Identities=23% Similarity=0.288 Sum_probs=126.6
Q ss_pred cccCCCCCcccccchHHHHH---HHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKE---ALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
...+.+.+|++++|++.+.. .+.+.+. .... .+++|+||||||||++|+++++.+ +.+|+.+++
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~----------~~~~--~slLL~GPpGtGKTTLA~aIA~~~-~~~f~~lna 85 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIK----------ADRV--GSLILYGPPGVGKTTLARIIANHT-RAHFSSLNA 85 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHh----------cCCC--ceEEEECCCCCCHHHHHHHHHHHh-cCcceeehh
Confidence 34566789999999999885 4555442 1122 479999999999999999999998 677877776
Q ss_pred cchhccccChhHHHHHHHHHHH-----HhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecC--CCCCCcCHH
Q psy3808 193 SDLVSKWLGESEKLVKTLFELA-----RAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGAT--NIPWVLDAA 265 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~f~~a-----~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt--n~~~~l~~~ 265 (330)
.... . ..++..+..+ ......+||||| ++.........++..+.. ..+++|++| |+...++++
T Consensus 86 ~~~~---i----~dir~~i~~a~~~l~~~~~~~IL~IDE-Ih~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 86 VLAG---V----KDLRAEVDRAKERLERHGKRTILFIDE-VHRFNKAQQDALLPWVEN--GTITLIGATTENPYFEVNKA 155 (725)
T ss_pred hhhh---h----HHHHHHHHHHHHHhhhcCCceEEEEeC-hhhCCHHHHHHHHHHhcC--ceEEEEEecCCChHhhhhhH
Confidence 4311 1 1122222222 113457999999 765444333333333322 446677655 333568899
Q ss_pred HHhccccEEEecCCCHHHHHHHHHHHhc-------CCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 266 IRRRFEKRIYIALPELNARLFMFRHHLG-------NTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 266 l~~Rf~~~i~~~~p~~~~r~~il~~~l~-------~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
+.+|+ ..+.|++++.+++..+++..+. ..+..+++..+..|++.+.|... .+.++++.|
T Consensus 156 L~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R-~lln~Le~a 221 (725)
T PRK13341 156 LVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR-SLLNALELA 221 (725)
T ss_pred hhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 99997 5699999999999999999887 44567889999999999987554 444444443
No 108
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.71 E-value=3e-16 Score=147.03 Aligned_cols=185 Identities=19% Similarity=0.305 Sum_probs=127.1
Q ss_pred CCCCCccccc-c--hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----CCcEEEec
Q psy3808 119 KPNVKWTDVA-G--LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----NSTFFSVS 191 (330)
Q Consensus 119 ~~~~~~~~~~-G--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----~~~~~~~~ 191 (330)
.+..+|++++ | ...+...+..+... .+...++++||||||||||+|++++++++. +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~----------~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAEN----------PGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhC----------cCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3667899966 4 23344545544321 122346799999999999999999999872 45678888
Q ss_pred ccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCCC---cC
Q psy3808 192 SSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPWV---LD 263 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~---l~ 263 (330)
+.++...+..........-|.... ..+.+|+||| ++. .....++..++.+... ...++|+++..|.. ++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDD-i~~l~~~~~~~~~l~~~~n~l~~~-~~~iiits~~~p~~l~~l~ 262 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDD-IQFLAGKERTQEEFFHTFNALHEA-GKQIVLTSDRPPKELPGLE 262 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEeh-hhhhcCCHHHHHHHHHHHHHHHHC-CCcEEEECCCCHHHHHHHH
Confidence 887765543332211112222222 2467999999 642 2345666666655443 23466656666644 67
Q ss_pred HHHHhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 264 AAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 264 ~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
+.+.+||. ..+.+++|+.++|..|++..+...+..+++..+..||..+.|-.+
T Consensus 263 ~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 263 ERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHH
Confidence 89999996 479999999999999999999888888999999999999987544
No 109
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=4.4e-16 Score=155.76 Aligned_cols=187 Identities=20% Similarity=0.301 Sum_probs=138.7
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCC
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNS 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~ 185 (330)
+.....+-.++.++|.++..+.+...+.. ...++++|+||||||||++|++++..+ .+.
T Consensus 163 l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~ 230 (852)
T TIGR03346 163 LTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNK 230 (852)
T ss_pred HHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCC
Confidence 33445567889999999988777776521 223578999999999999999999986 245
Q ss_pred cEEEecccchh--ccccChhHHHHHHHHHHHHhc-CCeEEEEeCCcchhhH-------HHHHHHHhcCCCCCCcEEEEec
Q psy3808 186 TFFSVSSSDLV--SKWLGESEKLVKTLFELARAH-RPSIIFIDERIDRGIS-------NALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 186 ~~~~~~~~~~~--~~~~~~~~~~~~~~f~~a~~~-~~~ii~iDe~~~~~~~-------~~l~~~l~~~~~~~~~v~vi~t 255 (330)
+++.++...+. .+|.|+.+..+..++..+... .++|||||| ++.... .....++..... ...+.+||+
T Consensus 231 ~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDE-ih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~Iga 308 (852)
T TIGR03346 231 RLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDE-LHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGA 308 (852)
T ss_pred eEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEecc-HHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEe
Confidence 67788777765 467888888999999887653 589999999 553321 112233333322 256889999
Q ss_pred CCCC-----CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC----CCCCCChHhHHHHHHHcCCCCH
Q psy3808 256 TNIP-----WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN----TRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 256 tn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~~~g~~~ 316 (330)
|+.+ ...|+++.|||+ .|.++.|+.+++..|++.+... +++.+.+..+..++..+.+|..
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 9876 357999999995 5899999999999999876544 3445678889999999888754
No 110
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.70 E-value=7.1e-16 Score=130.32 Aligned_cols=192 Identities=19% Similarity=0.278 Sum_probs=122.2
Q ss_pred CCCCCccccc-c--hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh----CCCcEEEec
Q psy3808 119 KPNVKWTDVA-G--LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVS 191 (330)
Q Consensus 119 ~~~~~~~~~~-G--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~ 191 (330)
.|..+|++++ | ...+...+...+.. .+...+.++||||+|+|||+|.+++++++ ++..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~----------~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAEN----------PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHS----------TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhc----------CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3678899986 4 44455555544422 22233569999999999999999999886 356788888
Q ss_pred ccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCCC---cC
Q psy3808 192 SSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPWV---LD 263 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~---l~ 263 (330)
+.++...+..........-|.... ....+|+||+ ++. .....+..+++.+... .+.+|+++...|.. ++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDD-i~~l~~~~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL-RSADLLIIDD-IQFLAGKQRTQEELFHLFNRLIES-GKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEET-GGGGTTHHHHHHHHHHHHHHHHHT-TSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEec-chhhcCchHHHHHHHHHHHHHHhh-CCeEEEEeCCCCccccccC
Confidence 887765433222111011122212 3456999999 553 3456777777776554 44566656556543 56
Q ss_pred HHHHhcccc--EEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 264 AAIRRRFEK--RIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 264 ~~l~~Rf~~--~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~ 324 (330)
+.+.+||.. .+.+.+|+.+.|..|++..+...+..+++..+..|++..++ +.++|..++.
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~ 210 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALN 210 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHH
Confidence 889998755 78889999999999999999999999999999999999876 4445655554
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.70 E-value=6.1e-16 Score=143.27 Aligned_cols=185 Identities=21% Similarity=0.319 Sum_probs=123.9
Q ss_pred CCCCCccccc-chHH--HHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh----CCCcEEEec
Q psy3808 119 KPNVKWTDVA-GLEA--AKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVS 191 (330)
Q Consensus 119 ~~~~~~~~~~-G~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~ 191 (330)
.+..+|++++ |... +...+...... .+..+++++||||||+|||+|++++++++ ++..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~----------~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAEN----------PGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhC----------cCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3567899954 5332 33344443321 12234579999999999999999999987 245678888
Q ss_pred ccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCCC---cC
Q psy3808 192 SSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPWV---LD 263 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~---l~ 263 (330)
+.++...+..........-|.... ..+.+|+||| ++. .....+...++.+... ...+||+++..|.. ++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDD-i~~l~~~~~~~~~l~~~~n~~~~~-~~~iiits~~~p~~l~~l~ 250 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDD-IQFLAGKERTQEEFFHTFNALHEN-GKQIVLTSDRPPKELPGLE 250 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEeh-hhhhcCCHHHHHHHHHHHHHHHHC-CCCEEEecCCCHHHHhhhh
Confidence 877665433221110011122111 2357999999 653 2345566666654333 33456656555644 56
Q ss_pred HHHHhcccc--EEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 264 AAIRRRFEK--RIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 264 ~~l~~Rf~~--~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
+.+.+||.. .+.+++|+.++|..|++..+...+..+++..+..||..+.|-.+
T Consensus 251 ~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 251 ERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVR 305 (405)
T ss_pred hhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHH
Confidence 889999964 69999999999999999999988888999999999999887443
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.3e-16 Score=149.83 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=131.8
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc---------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--------- 186 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--------- 186 (330)
..++.+.+|++|+|++.+++.|...+.. +..++.+||+||+|+|||++|+++|+.+.+..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4578899999999999999999887732 12235689999999999999999999873211
Q ss_pred ---------------EEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 187 ---------------FFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 187 ---------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
++.++... ...-..++.+...+.. ....||+||| .+......+..++..+....
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDE-a~~L~~~a~naLLk~LEepp 148 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDE-VHMLSTAAFNALLKTLEEPP 148 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeC-hHhCCHHHHHHHHHHHhcCC
Confidence 11111110 0112233443333222 3456999999 77655555555555555555
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
..++||.+++....+.+.+.+|+ ..+.|+.++..+...+++..+...+..+++..+..|++.+.|....-
T Consensus 149 ~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 149 PHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDA 218 (585)
T ss_pred CCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 66777777777788888999998 46899999999999999999888888889999999999999844433
No 113
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.9e-16 Score=143.63 Aligned_cols=193 Identities=23% Similarity=0.320 Sum_probs=140.5
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh---------
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV--------- 196 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~--------- 196 (330)
|-.|++++|+.+.+++.-...... ....-+||+||||+|||+|++.||..+ +..|++++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al-~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKAL-GRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHh-CCCEEEEecCccccHHHhcccc
Confidence 466999999999998854332211 111359999999999999999999999 8999999886542
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-------hHHHHHHHHhcCC------------CCCCcEEEEecCC
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG-------ISNALFLLLSGVG------------NDMDGILVLGATN 257 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-------~~~~l~~~l~~~~------------~~~~~v~vi~ttn 257 (330)
..|+|..+..+-+-...+....| ++++|| +|+. -..+++..++--. -+.+.|+||+|+|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDE-IDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDE-IDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeec-hhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC
Confidence 35777777777677777888888 888999 6643 2356666665321 1234799999999
Q ss_pred CCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhc-----CCC-----CCCChHhHHHHHHHcCCCC-----HHHHHHH
Q psy3808 258 IPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLG-----NTR-----NTISDENLKELAKRTEGYS-----GADISTL 322 (330)
Q Consensus 258 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~-----~~~-----~~~~~~~~~~la~~~~g~~-----~~di~~l 322 (330)
..+.++.+|+.|+ .+|.++-++..+..+|-+.++= ..+ ..+++..+..+.+....=+ -+.|..+
T Consensus 475 sl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki 553 (782)
T COG0466 475 SLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKI 553 (782)
T ss_pred ccccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHH
Confidence 9999999999999 7799999999999999887662 222 2345666666554422111 2678888
Q ss_pred Hhhccc
Q psy3808 323 ERNFKV 328 (330)
Q Consensus 323 ~~~a~~ 328 (330)
||-++.
T Consensus 554 ~RK~~~ 559 (782)
T COG0466 554 CRKAAK 559 (782)
T ss_pred HHHHHH
Confidence 887654
No 114
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.69 E-value=2e-15 Score=128.91 Aligned_cols=180 Identities=16% Similarity=0.202 Sum_probs=122.9
Q ss_pred CCCCCccccc--chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccc
Q psy3808 119 KPNVKWTDVA--GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSD 194 (330)
Q Consensus 119 ~~~~~~~~~~--G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~ 194 (330)
.++.+|++++ +...+...+..++. ...+.++++|+||||||||+||+++++.+ .+.+++.+++..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3457899987 34556666666542 11233579999999999999999999976 455777777766
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCCCCCcEEEEecCCCC--CCcCHHHHhc
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVGNDMDGILVLGATNIP--WVLDAAIRRR 269 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~--~~l~~~l~~R 269 (330)
+... + .......+|+||| ++ ......+...+.........+++++++..| +.+.+.+.+|
T Consensus 81 ~~~~------------~--~~~~~~~~liiDd-i~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDD-VERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeC-hhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 4321 1 1123456999999 54 334455666665544332223445444333 2456888888
Q ss_pred c--ccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 270 F--EKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 270 f--~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
| ...+.+++|+..++..+++..+...+..+++..+..|++...| +..++.++++.
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 8 4689999999999999999988888888999999999997665 44555555543
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.8e-16 Score=147.44 Aligned_cols=185 Identities=19% Similarity=0.192 Sum_probs=136.8
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS---------- 185 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~---------- 185 (330)
..++.+.+|++|+|++.+++.|...+.. +..++.+|||||+|+|||++|+++|..+.+.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3567889999999999999999988732 2233679999999999999999999987321
Q ss_pred --------------cEEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCC
Q psy3808 186 --------------TFFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDM 247 (330)
Q Consensus 186 --------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~ 247 (330)
.++.+++.. ...-..++.+...+.. ...-|++||| .+.........++..++...
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIde-a~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDE-VHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEEC-cccCCHHHHHHHHHHHhCCC
Confidence 111122110 0112334454444432 2345999999 77666666666666666666
Q ss_pred CcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 248 DGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
..+++|.+|+.+..+.+++++|+ ..+.|.+++..+....++..+...+...++..+..|+..++|..+..+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 67778878877889999999999 669999999999999999988888888888899999999988555433
No 116
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.69 E-value=1.4e-15 Score=139.13 Aligned_cols=199 Identities=24% Similarity=0.322 Sum_probs=133.8
Q ss_pred ccchHHHHHHHHHHhhcccCCcccc-c---CCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh-ccccC
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLF-T---GKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV-SKWLG 201 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~-~---~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~~~ 201 (330)
|+|++++++.+..++..+...-... . ....+..++||+||||||||++|+++|..+ +.+|+.++++.+. ..|+|
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL-DVPFAIADATTLTEAGYVG 151 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCccc
Confidence 8999999999977764322211100 0 112244689999999999999999999999 7899999998875 35777
Q ss_pred hh-HHHHHHHHHH----HHhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCC----------CCCc
Q psy3808 202 ES-EKLVKTLFEL----ARAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGN----------DMDG 249 (330)
Q Consensus 202 ~~-~~~~~~~f~~----a~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~----------~~~~ 249 (330)
.. +..+..++.. .....++|||||| ++.. +++.|+.++++-.. +...
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDE-Idkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDE-IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEec-hhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 64 3334444432 1234678999999 5433 56788888875310 1112
Q ss_pred EEEEecCCCCC----------------------------------------------------CcCHHHHhccccEEEec
Q psy3808 250 ILVLGATNIPW----------------------------------------------------VLDAAIRRRFEKRIYIA 277 (330)
Q Consensus 250 v~vi~ttn~~~----------------------------------------------------~l~~~l~~Rf~~~i~~~ 277 (330)
+++|.|+|..+ .+.|+|+.|++.++.|.
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~ 310 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLE 310 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecC
Confidence 44455544300 13578888999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------cCCC--CCCChHhHHHHHHH--cCCCCHHHHHHHHhhcc
Q psy3808 278 LPELNARLFMFRH----HL-------GNTR--NTISDENLKELAKR--TEGYSGADISTLERNFK 327 (330)
Q Consensus 278 ~p~~~~r~~il~~----~l-------~~~~--~~~~~~~~~~la~~--~~g~~~~di~~l~~~a~ 327 (330)
+.+.++..+|+.. .+ ...+ ..+++..+..|++. ..++-.+.|..++++.+
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l 375 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEIL 375 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHh
Confidence 9999999999862 22 2223 34688889999986 44566667777666544
No 117
>KOG0991|consensus
Probab=99.69 E-value=1.8e-16 Score=129.33 Aligned_cols=191 Identities=20% Similarity=0.228 Sum_probs=140.4
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----cEEEe
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS----TFFSV 190 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~----~~~~~ 190 (330)
++.+|.+..+.|++|+++....+.-.. ..++.| +++|.|||||||||-+.++|+++-|. .+..+
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via----------~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIA----------KEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHH----------HcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 677899999999999999999998655 334555 89999999999999999999998443 35667
Q ss_pred cccchhccccChhHHHHHHHHHHHH-hcCC---eEEEEeCCcc---hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcC
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFELAR-AHRP---SIIFIDERID---RGISNALFLLLSGVGNDMDGILVLGATNIPWVLD 263 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~a~-~~~~---~ii~iDe~~~---~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~ 263 (330)
++++-.+- .-....+. .|..-+ ..+| .||++|| .| ...+.++.+.+.-+.+ .+.+..++|....+-
T Consensus 85 NASdeRGI--DvVRn~IK-~FAQ~kv~lp~grhKIiILDE-ADSMT~gAQQAlRRtMEiyS~---ttRFalaCN~s~KIi 157 (333)
T KOG0991|consen 85 NASDERGI--DVVRNKIK-MFAQKKVTLPPGRHKIIILDE-ADSMTAGAQQALRRTMEIYSN---TTRFALACNQSEKII 157 (333)
T ss_pred cCcccccc--HHHHHHHH-HHHHhhccCCCCceeEEEeec-cchhhhHHHHHHHHHHHHHcc---cchhhhhhcchhhhh
Confidence 76653221 11122232 233222 2333 3999999 55 4455666666665543 356777889999999
Q ss_pred HHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 264 AAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 264 ~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
..+.+|+ ..+.+...+..+...-+....+..++..+++.++.+....+|.....++++-..
T Consensus 158 EPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 158 EPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQST 218 (333)
T ss_pred hhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHH
Confidence 9999999 457777777777766666677777888899999999999999999888887543
No 118
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.69 E-value=1.8e-15 Score=129.19 Aligned_cols=182 Identities=16% Similarity=0.228 Sum_probs=125.2
Q ss_pred CCCCccccc--chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccch
Q psy3808 120 PNVKWTDVA--GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDL 195 (330)
Q Consensus 120 ~~~~~~~~~--G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~ 195 (330)
...+|++++ +...+.+.++.++. .....+++|+||||||||++|++++..+ .+.+++.+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 346777876 36667888877652 1223689999999999999999999887 3457888888777
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh-----HHHHHHHHhcCCCCCCcEEEEecCCCCCCc--C-HHHH
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI-----SNALFLLLSGVGNDMDGILVLGATNIPWVL--D-AAIR 267 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~-----~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l--~-~~l~ 267 (330)
.... ..++... ..+.+|+||| ++... ...+..+++..... ...+|++++..+..+ . +.+.
T Consensus 78 ~~~~--------~~~~~~~--~~~~lLvIDd-i~~l~~~~~~~~~L~~~l~~~~~~-~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 78 AQAD--------PEVLEGL--EQADLVCLDD-VEAIAGQPEWQEALFHLYNRVREA-GGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred HHhH--------HHHHhhc--ccCCEEEEeC-hhhhcCChHHHHHHHHHHHHHHHc-CCeEEEECCCChHHCCcccHHHH
Confidence 5321 1222222 2346999999 65322 45566666544332 234445444444332 2 7888
Q ss_pred hccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 268 RRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 268 ~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
+|+. ..+.+|+|+.+++..+++.++...+..+++..+..|+.... -+.+++.++++++
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~ 205 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDAL 205 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 8874 67999999999999999988877777889999999999644 4667787776653
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=6.3e-16 Score=150.98 Aligned_cols=195 Identities=17% Similarity=0.269 Sum_probs=134.3
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc-----ccc
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS-----KWL 200 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~-----~~~ 200 (330)
.|+|++++++.|...+..... .....+.|..++||+||||||||++|+++|..+ +.+++.++++++.. ...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~---gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc---cccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-CCCcEEeechhhcccccHHHHc
Confidence 389999999999998854321 111233455679999999999999999999999 68999999887643 222
Q ss_pred ChhHH-----HHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCC--------CCCCcEEEEecCCCC-----
Q psy3808 201 GESEK-----LVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVG--------NDMDGILVLGATNIP----- 259 (330)
Q Consensus 201 ~~~~~-----~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~--------~~~~~v~vi~ttn~~----- 259 (330)
|.... ....+....+..+.+|||||| ++ ..+.+.|+.+++... .+..++++|+|||..
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDE-ieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~ 613 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDE-IEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 613 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEecc-HhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHh
Confidence 21111 112334445566779999999 55 455566777776321 122467899999832
Q ss_pred --------------------CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhc---------CCCCCCChHhHHHHHHH
Q psy3808 260 --------------------WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLG---------NTRNTISDENLKELAKR 310 (330)
Q Consensus 260 --------------------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~---------~~~~~~~~~~~~~la~~ 310 (330)
..+.|+|+.|++.++.|++.+.++...|+..++. .....+++..+..|+..
T Consensus 614 ~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~ 693 (758)
T PRK11034 614 RKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEK 693 (758)
T ss_pred hcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHh
Confidence 1256899999999999999999999999876653 22345677788888865
Q ss_pred c--CCCCHHHHHHHHhh
Q psy3808 311 T--EGYSGADISTLERN 325 (330)
Q Consensus 311 ~--~g~~~~di~~l~~~ 325 (330)
. ..|-.+.|..++++
T Consensus 694 ~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 694 GYDRAMGARPMARVIQD 710 (758)
T ss_pred CCCCCCCCchHHHHHHH
Confidence 3 23445666666554
No 120
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=6.1e-16 Score=143.72 Aligned_cols=183 Identities=15% Similarity=0.267 Sum_probs=122.6
Q ss_pred CCCCCccccc-chHH--HHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh----CCCcEEEec
Q psy3808 119 KPNVKWTDVA-GLEA--AKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVS 191 (330)
Q Consensus 119 ~~~~~~~~~~-G~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~ 191 (330)
.+..+|++++ |... +.....+... ..+. +++++||||||||||+|++++++++ ++..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~----------~~~~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAK----------NPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHh----------CcCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4678899988 5322 2233333221 1111 3579999999999999999999986 234678888
Q ss_pred ccchhccccChhH-HHHHHHHHHHHhcCCeEEEEeCCcchh-----hHHHHHHHHhcCCCCCCcEEEEecCCCCCC---c
Q psy3808 192 SSDLVSKWLGESE-KLVKTLFELARAHRPSIIFIDERIDRG-----ISNALFLLLSGVGNDMDGILVLGATNIPWV---L 262 (330)
Q Consensus 192 ~~~~~~~~~~~~~-~~~~~~f~~a~~~~~~ii~iDe~~~~~-----~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~---l 262 (330)
+.++...+..... ..+. -|.......+.+|+||| ++.. ....+...+..+... ...+||++...|.. +
T Consensus 168 ~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDD-i~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDD-VQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSEF 244 (440)
T ss_pred HHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEec-hhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHHH
Confidence 8776554332211 1111 22222223578999999 6532 344566666554443 34566655566654 4
Q ss_pred CHHHHhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCC
Q psy3808 263 DAAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYS 315 (330)
Q Consensus 263 ~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~ 315 (330)
.+.+.+||. ..+.+++|+.+.|..|++..+...+..+++..+..||+.+.|..
T Consensus 245 ~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 245 QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCH
Confidence 567888884 46889999999999999999988888899999999999998743
No 121
>PRK06620 hypothetical protein; Validated
Probab=99.68 E-value=2.6e-15 Score=126.29 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=114.2
Q ss_pred CCCCCcccccc---hHHHHHHHHHHhhcccCCcccccCCCCC-CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 119 KPNVKWTDVAG---LEAAKEALKEAVILPIKFPQLFTGKRVP-WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 119 ~~~~~~~~~~G---~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
.+..+|++++- +..+...+..+...+ ...| .++++||||||||||||++++++.. +..+ ++...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~~~~--~~~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLS-NAYI--IKDIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhcc-CCEE--cchhh
Confidence 35668888775 334555555543211 1122 2679999999999999999999876 4322 22111
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCC--cCHHHHhcccc
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWV--LDAAIRRRFEK 272 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~--l~~~l~~Rf~~ 272 (330)
.. . ..+ ....+++||| ++......+..++..+... ++.++|+++..|.. + +++++|+..
T Consensus 78 ~~-------~----~~~-----~~~d~lliDd-i~~~~~~~lf~l~N~~~e~-g~~ilits~~~p~~l~l-~~L~SRl~~ 138 (214)
T PRK06620 78 FN-------E----EIL-----EKYNAFIIED-IENWQEPALLHIFNIINEK-QKYLLLTSSDKSRNFTL-PDLSSRIKS 138 (214)
T ss_pred hc-------h----hHH-----hcCCEEEEec-cccchHHHHHHHHHHHHhc-CCEEEEEcCCCccccch-HHHHHHHhC
Confidence 10 0 111 1236899999 8754334566666555444 45667766655543 5 889999853
Q ss_pred --EEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 273 --RIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 273 --~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
++.+.+|+.+.+..+++..+...+..+++..+..|+..+.|-...
T Consensus 139 gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 139 VLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred CceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Confidence 689999999999999999988788889999999999999876553
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=1.8e-14 Score=143.42 Aligned_cols=194 Identities=20% Similarity=0.256 Sum_probs=133.4
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchhcc-----
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLVSK----- 198 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~----- 198 (330)
.|+|++.+++.+.+.+..... .....+.|...+||+||||||||.+|+++|..+. ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~---gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARA---GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSR 643 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcc
Confidence 599999999999998854321 1112234434589999999999999999999983 347888888776422
Q ss_pred -------ccChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC--------CCCcEEEEecCCCCC-
Q psy3808 199 -------WLGESEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN--------DMDGILVLGATNIPW- 260 (330)
Q Consensus 199 -------~~~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~~- 260 (330)
|+|..+. ..+....+..+++||+||| ..+....+.|+..++...- +..+++||.|||...
T Consensus 644 l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~ 721 (852)
T TIGR03345 644 LKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSD 721 (852)
T ss_pred ccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchH
Confidence 3332211 1344555667889999999 3334555566666654321 124678888988521
Q ss_pred ----------------------------CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC--------C--CCCChH
Q psy3808 261 ----------------------------VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT--------R--NTISDE 302 (330)
Q Consensus 261 ----------------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~--------~--~~~~~~ 302 (330)
.+.|+|++|++ +|.|.+.+.++...|+...+... + ..+++.
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~ 800 (852)
T TIGR03345 722 LIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEA 800 (852)
T ss_pred HHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHH
Confidence 14588888996 89999999999999987765431 3 346788
Q ss_pred hHHHHHHHcCC--CCHHHHHHHHhh
Q psy3808 303 NLKELAKRTEG--YSGADISTLERN 325 (330)
Q Consensus 303 ~~~~la~~~~g--~~~~di~~l~~~ 325 (330)
.+..|+....+ |-.+.|..+++.
T Consensus 801 a~~~La~~g~~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 801 LVEHIVARCTEVESGARNIDAILNQ 825 (852)
T ss_pred HHHHHHHHcCCCCCChHHHHHHHHH
Confidence 89999988754 556777777655
No 123
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.67 E-value=1.7e-14 Score=143.99 Aligned_cols=197 Identities=19% Similarity=0.229 Sum_probs=133.2
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchhcc----
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLVSK---- 198 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~---- 198 (330)
..|+|++.+++.+...+.... ......+.|...+||+||||||||++|+++|..+. +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~---~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR---VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh---hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 358999999999988874321 11122344545689999999999999999999883 357888888776321
Q ss_pred -ccChhHH-----HHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC--------CCCcEEEEecCCCCCC
Q psy3808 199 -WLGESEK-----LVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVGN--------DMDGILVLGATNIPWV 261 (330)
Q Consensus 199 -~~~~~~~-----~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~~~ 261 (330)
..|.... ....+....+..+.+||+||| ++ ....+.|+..++...- +..+++||+|||....
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDe-ieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~ 664 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDE-IEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSK 664 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECC-hhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchH
Confidence 1121111 112455666667779999999 55 4555666666654211 2356889989875311
Q ss_pred -------------------------------------cCHHHHhccccEEEecCCCHHHHHHHHHHHhcC-------C--
Q psy3808 262 -------------------------------------LDAAIRRRFEKRIYIALPELNARLFMFRHHLGN-------T-- 295 (330)
Q Consensus 262 -------------------------------------l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~-------~-- 295 (330)
+.|.|++|++.+|.|.+.+.++...|+...+.. .
T Consensus 665 ~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i 744 (821)
T CHL00095 665 VIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGI 744 (821)
T ss_pred HHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 346788899999999999999999998776653 2
Q ss_pred CCCCChHhHHHHHHH--cCCCCHHHHHHHHhh
Q psy3808 296 RNTISDENLKELAKR--TEGYSGADISTLERN 325 (330)
Q Consensus 296 ~~~~~~~~~~~la~~--~~g~~~~di~~l~~~ 325 (330)
...+++.....|+.. ...|-.+.|..++++
T Consensus 745 ~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 745 QLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred EEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 234677788888886 234455666666654
No 124
>PRK08727 hypothetical protein; Validated
Probab=99.67 E-value=5.6e-15 Score=126.30 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=115.9
Q ss_pred CCCCcccccchHH-HHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh
Q psy3808 120 PNVKWTDVAGLEA-AKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV 196 (330)
Q Consensus 120 ~~~~~~~~~G~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~ 196 (330)
+..+|+++++... ....+..... +.....++|+||+|||||+|++++++.+ .+....+++..++.
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~~------------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALAA------------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHHh------------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 4568888875443 3333332221 1122469999999999999999998876 24455556654432
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCCC---cCHHHHh
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPWV---LDAAIRR 268 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~---l~~~l~~ 268 (330)
. .+...+... ....+|+||| ++. .....+..++...... ..-+|+++...|.. +++.+.+
T Consensus 82 ~--------~~~~~~~~l--~~~dlLiIDD-i~~l~~~~~~~~~lf~l~n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 82 G--------RLRDALEAL--EGRSLVALDG-LESIAGQREDEVALFDFHNRARAA-GITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred h--------hHHHHHHHH--hcCCEEEEeC-cccccCChHHHHHHHHHHHHHHHc-CCeEEEECCCChhhhhhhhHHHHH
Confidence 2 122233322 3446999999 552 2334555555554332 22344444455554 4689999
Q ss_pred cc--ccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 269 RF--EKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 269 Rf--~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
|| ...+.+++|+.+++..|++..+...+..+++..+..|++.++|...+-
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 96 567899999999999999998887788899999999999999866655
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=3.6e-15 Score=138.24 Aligned_cols=189 Identities=18% Similarity=0.271 Sum_probs=124.8
Q ss_pred CCCCCccccc-chH--HHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 119 KPNVKWTDVA-GLE--AAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 119 ~~~~~~~~~~-G~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
.|..+|++++ |.. -+...+.++...+. ...+.+.++++||||||+|||+|++++++.+ .+..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~------~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE------QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc------cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4678899987 432 23334444332110 0112234679999999999999999999987 35677888887
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCC---CcCHH
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPW---VLDAA 265 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~---~l~~~ 265 (330)
.+...+.......-...|.... ..+.+|+||| ++. .....+...+..+... ...+|++++..|. .+++.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDD-iq~l~~k~~~qeelf~l~N~l~~~-~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIED-IEVFSGKGATQEEFFHTFNSLHTE-GKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcc-hhhhcCChhhHHHHHHHHHHHHHC-CCcEEEecCCCHHHHhhhHHH
Confidence 6654332211111111233222 3467999999 543 2345556665544332 3455555555554 46789
Q ss_pred HHhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 266 IRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 266 l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
+.+||. ..+.+++|+.++|..|++..+...+..+++..+..|+....+-.+
T Consensus 256 L~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir 308 (445)
T PRK12422 256 LISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVK 308 (445)
T ss_pred HHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHH
Confidence 999995 678899999999999999999998888999999999998887554
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=2.9e-15 Score=147.90 Aligned_cols=196 Identities=18% Similarity=0.276 Sum_probs=138.3
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc-------
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK------- 198 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~------- 198 (330)
.|+|++++++.+...+.... ......+.|..++||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~---~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSR---AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-GVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHh---cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-cCCeEEEeCchhhhcccHHHHh
Confidence 48899999999988775321 1112233454569999999999999999999999 688999998876432
Q ss_pred -----ccChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCC--------CCCCcEEEEecCCCCC---
Q psy3808 199 -----WLGESEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVG--------NDMDGILVLGATNIPW--- 260 (330)
Q Consensus 199 -----~~~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~--------~~~~~v~vi~ttn~~~--- 260 (330)
|+|.. ....+....+..+.+||+||| .++....+.|+.+++... .+..++++|+|||...
T Consensus 531 g~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~ 608 (731)
T TIGR02639 531 GAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEM 608 (731)
T ss_pred cCCCCCcccc--hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhh
Confidence 22211 122344555667789999999 334555666777766431 1234678898997641
Q ss_pred ----------------------CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC-------C--CCCCChHhHHHHHH
Q psy3808 261 ----------------------VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN-------T--RNTISDENLKELAK 309 (330)
Q Consensus 261 ----------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~-------~--~~~~~~~~~~~la~ 309 (330)
.+.|.|+.|++.++.|.+.+.++...|++..+.+ . ...+++..+..|+.
T Consensus 609 ~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~ 688 (731)
T TIGR02639 609 SKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAE 688 (731)
T ss_pred hhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHH
Confidence 2568899999999999999999999999887753 1 24567888888998
Q ss_pred H--cCCCCHHHHHHHHhhcc
Q psy3808 310 R--TEGYSGADISTLERNFK 327 (330)
Q Consensus 310 ~--~~g~~~~di~~l~~~a~ 327 (330)
. ...|..+.|..++++-+
T Consensus 689 ~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 689 KGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred hCCCcccCchHHHHHHHHHh
Confidence 6 34566677777776543
No 127
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.66 E-value=3.4e-15 Score=146.99 Aligned_cols=173 Identities=20% Similarity=0.346 Sum_probs=121.9
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc--------
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS-------- 197 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~-------- 197 (330)
+..|++.+|+.+.+++...... .......++|+||||||||++++.+|+.+ +.+++.++.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l-~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKAT-GRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEcCCCCCHHHhccch
Confidence 4889999999999887543221 11122469999999999999999999999 68888887655321
Q ss_pred -cccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh-------HHHHHHHHhcC------------CCCCCcEEEEecCC
Q psy3808 198 -KWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI-------SNALFLLLSGV------------GNDMDGILVLGATN 257 (330)
Q Consensus 198 -~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~-------~~~l~~~l~~~------------~~~~~~v~vi~ttn 257 (330)
.|.|.....+...+..+....| ||+||| +|... ..+|+..++.- ..+.+++++|+|+|
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDE-idk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN 473 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDE-IDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSN 473 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEC-hhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCC
Confidence 2444444444444444443444 899999 65432 35677766531 11336799999998
Q ss_pred CCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC----------CCCCCChHhHHHHHH
Q psy3808 258 IPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN----------TRNTISDENLKELAK 309 (330)
Q Consensus 258 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----------~~~~~~~~~~~~la~ 309 (330)
.. .++++|++|| ..|.++.++.++..+|.+.++.. ....+++..+..+++
T Consensus 474 ~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 474 SM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred CC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 76 5999999999 57999999999999999887741 123456777777775
No 128
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.66 E-value=1.1e-14 Score=140.51 Aligned_cols=183 Identities=22% Similarity=0.314 Sum_probs=123.1
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcE
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTF 187 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~ 187 (330)
....+.+|++++|++...+.+...+..+ .+.+++|+||||||||++|+++++.. .+.+|
T Consensus 146 ~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 146 SLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 3455789999999999988877665221 12479999999999999999998765 13568
Q ss_pred EEecccchhc-------cccChhHH----HHHHHHH----------HHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCC
Q psy3808 188 FSVSSSDLVS-------KWLGESEK----LVKTLFE----------LARAHRPSIIFIDE--RIDRGISNALFLLLSGVG 244 (330)
Q Consensus 188 ~~~~~~~~~~-------~~~~~~~~----~~~~~f~----------~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~ 244 (330)
+.+++..+.. .+.+.... .....+. .......++||||| .++...+..++..+..-.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~ 293 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKR 293 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCe
Confidence 8888765421 11111100 0000000 00122356999999 445556666766665421
Q ss_pred -------------------------CCCCcEEEEe-cCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCC
Q psy3808 245 -------------------------NDMDGILVLG-ATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNT 298 (330)
Q Consensus 245 -------------------------~~~~~v~vi~-ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~ 298 (330)
.....+++|+ ||+.+..+++++++||. .+.+++++.+++..|++..+...+..
T Consensus 294 v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ 372 (615)
T TIGR02903 294 VEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVH 372 (615)
T ss_pred EEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 0112345555 45668889999999995 57899999999999999999887766
Q ss_pred CChHhHHHHHHHcC
Q psy3808 299 ISDENLKELAKRTE 312 (330)
Q Consensus 299 ~~~~~~~~la~~~~ 312 (330)
+++..+..|++.+.
T Consensus 373 ls~eal~~L~~ys~ 386 (615)
T TIGR02903 373 LAAGVEELIARYTI 386 (615)
T ss_pred CCHHHHHHHHHCCC
Confidence 78888888888764
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.65 E-value=5.9e-15 Score=134.33 Aligned_cols=200 Identities=26% Similarity=0.383 Sum_probs=135.3
Q ss_pred ccchHHHHHHHHHHhhcccCCcccc-cCC-----CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh-ccc
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLF-TGK-----RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV-SKW 199 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~-~~~-----~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~ 199 (330)
|+|++++++.+..++......-... ... ..+..++||+||||||||++|+++|..+ +.+|..+++..+. ..|
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l-~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGY 157 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc-CCCeEEechhhcccccc
Confidence 8999999999987763222111100 000 1123689999999999999999999999 7899888887764 357
Q ss_pred cChh-HHHHHHHHHHH----HhcCCeEEEEeCCcch-----------------hhHHHHHHHHhcCCC----------CC
Q psy3808 200 LGES-EKLVKTLFELA----RAHRPSIIFIDERIDR-----------------GISNALFLLLSGVGN----------DM 247 (330)
Q Consensus 200 ~~~~-~~~~~~~f~~a----~~~~~~ii~iDe~~~~-----------------~~~~~l~~~l~~~~~----------~~ 247 (330)
.|.. +..+..++..+ ....++|||||| ++. .+++.|+.++++... +.
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDE-Idkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDE-IDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecc-cchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 7764 34444443322 234678999999 552 467788888865431 12
Q ss_pred CcEEEEecCCCCC--------------------------------------------------CcCHHHHhccccEEEec
Q psy3808 248 DGILVLGATNIPW--------------------------------------------------VLDAAIRRRFEKRIYIA 277 (330)
Q Consensus 248 ~~v~vi~ttn~~~--------------------------------------------------~l~~~l~~Rf~~~i~~~ 277 (330)
.++++|.|+|..+ .+.|+|+.|++.++.|.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~ 316 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE 316 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC
Confidence 3467777776510 03477888999999999
Q ss_pred CCCHHHHHHHHHHH----h-------c--CCCCCCChHhHHHHHHH--cCCCCHHHHHHHHhhccc
Q psy3808 278 LPELNARLFMFRHH----L-------G--NTRNTISDENLKELAKR--TEGYSGADISTLERNFKV 328 (330)
Q Consensus 278 ~p~~~~r~~il~~~----l-------~--~~~~~~~~~~~~~la~~--~~g~~~~di~~l~~~a~~ 328 (330)
+.+.++..+|+... + . .....+++..+..||+. ...+-.+-|..++++.++
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~ 382 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLL 382 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhH
Confidence 99999999887642 2 1 22234578889999987 445667778887776654
No 130
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.65 E-value=2.5e-14 Score=117.49 Aligned_cols=192 Identities=27% Similarity=0.339 Sum_probs=140.6
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccc
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSD 194 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~ 194 (330)
..++.+.+.+++|.+.+++.|.+.....+ .+.|.+++||||..|||||+|++|+.+++ .+..++.|+-.+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~--------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFA--------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHH--------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 44567999999999999999988764332 35567899999999999999999999998 344678888777
Q ss_pred hhccccChhHHHHHHHHHHHHhc-CCeEEEEeC-C--cchhhHHHHHHHHhc-CCCCCCcEEEEecCCCCCCcCH-----
Q psy3808 195 LVSKWLGESEKLVKTLFELARAH-RPSIIFIDE-R--IDRGISNALFLLLSG-VGNDMDGILVLGATNIPWVLDA----- 264 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~-~~~ii~iDe-~--~~~~~~~~l~~~l~~-~~~~~~~v~vi~ttn~~~~l~~----- 264 (330)
+.. +..+++..+.. ...|||+|+ . -+......+...+++ +...+.+|+|.+|+|+-+.++.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn 194 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDN 194 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhC
Confidence 643 33444444433 457999998 2 234556677777775 4556678999999998654431
Q ss_pred -----------------HHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHH--HH--HHcCCCCHHHHHHHH
Q psy3808 265 -----------------AIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKE--LA--KRTEGYSGADISTLE 323 (330)
Q Consensus 265 -----------------~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~--la--~~~~g~~~~di~~l~ 323 (330)
++-.||+..+.|++++.++...|+..++...+...++..++. +. -.-.|-||+--.+.+
T Consensus 195 ~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~ 274 (287)
T COG2607 195 EGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFI 274 (287)
T ss_pred CCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHH
Confidence 233499999999999999999999999999998887654443 32 234566776555554
Q ss_pred hh
Q psy3808 324 RN 325 (330)
Q Consensus 324 ~~ 325 (330)
+.
T Consensus 275 ~~ 276 (287)
T COG2607 275 RD 276 (287)
T ss_pred HH
Confidence 43
No 131
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.65 E-value=5.8e-15 Score=132.65 Aligned_cols=183 Identities=28% Similarity=0.418 Sum_probs=129.4
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccC--CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh-ccccC-h
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTG--KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV-SKWLG-E 202 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~~~-~ 202 (330)
|+|++++++.+..++...+....+... ...+++++||+||||||||++|+++|..+ +.+|+.+++..+. ..|.| .
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeecceeecCCcccCC
Confidence 899999999998777644322222111 12345899999999999999999999999 7999999988776 36777 3
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q psy3808 203 SEKLVKTLFELA-------------------------------------------------------------------- 214 (330)
Q Consensus 203 ~~~~~~~~f~~a-------------------------------------------------------------------- 214 (330)
.+..++.+|..+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 455555554443
Q ss_pred -----------------------------------------------------------------------HhcCCeEEE
Q psy3808 215 -----------------------------------------------------------------------RAHRPSIIF 223 (330)
Q Consensus 215 -----------------------------------------------------------------------~~~~~~ii~ 223 (330)
+....+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012446999
Q ss_pred EeCCcc---------------hhhHHHHHHHHhcCC-------CCCCcEEEEecC----CCCCCcCHHHHhccccEEEec
Q psy3808 224 IDERID---------------RGISNALFLLLSGVG-------NDMDGILVLGAT----NIPWVLDAAIRRRFEKRIYIA 277 (330)
Q Consensus 224 iDe~~~---------------~~~~~~l~~~l~~~~-------~~~~~v~vi~tt----n~~~~l~~~l~~Rf~~~i~~~ 277 (330)
||| +| .+++..|+.++.+-. -+.++++||++. ..|.++-|.|.-||+.++.+.
T Consensus 253 iDE-iDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 253 IDE-IDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEc-hhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 999 54 335566666666522 133578999876 357778899999999999999
Q ss_pred CCCHHHHHHHHH-----------HHhcCCC--CCCChHhHHHHHHHc
Q psy3808 278 LPELNARLFMFR-----------HHLGNTR--NTISDENLKELAKRT 311 (330)
Q Consensus 278 ~p~~~~r~~il~-----------~~l~~~~--~~~~~~~~~~la~~~ 311 (330)
+++.++...||. .++.-.+ ..+++..+..+|+..
T Consensus 332 ~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 999999988872 1223233 235777788877764
No 132
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=4.5e-15 Score=139.93 Aligned_cols=182 Identities=20% Similarity=0.305 Sum_probs=124.1
Q ss_pred CCCCCcccccchHH---HHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh----CCCcEEEec
Q psy3808 119 KPNVKWTDVAGLEA---AKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVS 191 (330)
Q Consensus 119 ~~~~~~~~~~G~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~ 191 (330)
.+..+|++++.-.. +...+...+.. .+...+.++|||++|||||+|++++++++ .+..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~----------~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEA----------PAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhC----------ccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 35678898874222 22333333311 11223469999999999999999999987 245778889
Q ss_pred ccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc-----hhhHHHHHHHHhcCCCCCCcEEEEecCCC-CC---Cc
Q psy3808 192 SSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-----RGISNALFLLLSGVGNDMDGILVLGATNI-PW---VL 262 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----~~~~~~l~~~l~~~~~~~~~v~vi~ttn~-~~---~l 262 (330)
+.++...+...........|... ...+.+|+||| ++ ......|+.+++.+... .+-+|| |++. |. .+
T Consensus 352 aeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDD-Iq~l~gke~tqeeLF~l~N~l~e~-gk~III-TSd~~P~eL~~l 427 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDD-IQFLEDKESTQEEFFHTFNTLHNA-NKQIVL-SSDRPPKQLVTL 427 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEeh-hccccCCHHHHHHHHHHHHHHHhc-CCCEEE-ecCCChHhhhhc
Confidence 88877655433222222233322 23468999999 54 23345677777766544 233445 4544 33 46
Q ss_pred CHHHHhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCC
Q psy3808 263 DAAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGY 314 (330)
Q Consensus 263 ~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~ 314 (330)
++.|.+||. .++.+..|+.+.|..|++..+...+..+++..+..|+....+-
T Consensus 428 ~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 428 EDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred cHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC
Confidence 789999984 4678899999999999999999999999999999999998764
No 133
>PRK05642 DNA replication initiation factor; Validated
Probab=99.65 E-value=1.5e-14 Score=123.64 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=106.1
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc-----h
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-----R 230 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----~ 230 (330)
.+.++|+||+|||||+|++++++++ .+..+++++..++... . ..+.+... ...+|+||| ++ .
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----~----~~~~~~~~--~~d~LiiDD-i~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----G----PELLDNLE--QYELVCLDD-LDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----h----HHHHHhhh--hCCEEEEec-hhhhcCCh
Confidence 3679999999999999999999876 2456777887776542 1 12222222 235899999 54 2
Q ss_pred hhHHHHHHHHhcCCCCCCcEEEEecCCCCC--C-cCHHHHhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHH
Q psy3808 231 GISNALFLLLSGVGNDMDGILVLGATNIPW--V-LDAAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLK 305 (330)
Q Consensus 231 ~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~--~-l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~ 305 (330)
.....+..+++..... .+.++++++..|. . ..|.+.+||. ..+.+.+|+.+++..+++..+...+..+++..+.
T Consensus 114 ~~~~~Lf~l~n~~~~~-g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~ 192 (234)
T PRK05642 114 DWEEALFHLFNRLRDS-GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGH 192 (234)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3345677777665443 3566776665553 3 3689999984 5677899999999999997777777888999999
Q ss_pred HHHHHcCCCCH
Q psy3808 306 ELAKRTEGYSG 316 (330)
Q Consensus 306 ~la~~~~g~~~ 316 (330)
.|++..+|..+
T Consensus 193 ~L~~~~~~d~r 203 (234)
T PRK05642 193 FILTRGTRSMS 203 (234)
T ss_pred HHHHhcCCCHH
Confidence 99999987544
No 134
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.63 E-value=4.8e-15 Score=133.24 Aligned_cols=183 Identities=27% Similarity=0.427 Sum_probs=129.8
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCC--CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc-cccC-h
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKR--VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS-KWLG-E 202 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~~-~ 202 (330)
|+|++++++.+..++...+.+..+..... .+++++||+||||||||++|+++|..+ +.+|+.++++.+.. .|.| .
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh-CChheeecchhhccCCcccCC
Confidence 89999999999888854332222211111 234789999999999999999999999 79999999987774 6877 3
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q psy3808 203 SEKLVKTLFELAR------------------------------------------------------------------- 215 (330)
Q Consensus 203 ~~~~~~~~f~~a~------------------------------------------------------------------- 215 (330)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3455555555440
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q psy3808 216 -----------------------------------------------------------------------AHRPSIIFI 224 (330)
Q Consensus 216 -----------------------------------------------------------------------~~~~~ii~i 224 (330)
...-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred eCCcc---------------hhhHHHHHHHHhcCC-------CCCCcEEEEecC----CCCCCcCHHHHhccccEEEecC
Q psy3808 225 DERID---------------RGISNALFLLLSGVG-------NDMDGILVLGAT----NIPWVLDAAIRRRFEKRIYIAL 278 (330)
Q Consensus 225 De~~~---------------~~~~~~l~~~l~~~~-------~~~~~v~vi~tt----n~~~~l~~~l~~Rf~~~i~~~~ 278 (330)
|| +| .+++..|+.++.+-. -+.++++||++. ..|.++-|.|.-||+.++.+.+
T Consensus 256 DE-iDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 256 DE-IDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred Ec-chhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 99 44 335556666666522 133578999776 4567788999999999999999
Q ss_pred CCHHHHHHHHH-----------HHhcCCC--CCCChHhHHHHHHHc
Q psy3808 279 PELNARLFMFR-----------HHLGNTR--NTISDENLKELAKRT 311 (330)
Q Consensus 279 p~~~~r~~il~-----------~~l~~~~--~~~~~~~~~~la~~~ 311 (330)
++.++...||. .++.-.+ ..+++..+..+|+..
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 380 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 380 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 99999888873 1222223 345777888888765
No 135
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=2.3e-14 Score=128.16 Aligned_cols=173 Identities=17% Similarity=0.200 Sum_probs=120.9
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC-------cEEEecccch
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS-------TFFSVSSSDL 195 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~-------~~~~~~~~~~ 195 (330)
+|++++|++.+++.+...+. .+..++.+||+||+|+|||++|++++..+-+. .++.+.+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 68999999999999998872 22333678999999999999999999987221 12233221
Q ss_pred hccccChhHHHHHHHHHHH----HhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccc
Q psy3808 196 VSKWLGESEKLVKTLFELA----RAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFE 271 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a----~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~ 271 (330)
.+... .-..++.+...+ .....-|++||+ .+.....+...++..++++++++++|.+|+.++.+.|++++|+
T Consensus 69 ~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~-ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc- 144 (313)
T PRK05564 69 NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYN-SEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC- 144 (313)
T ss_pred cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEec-hhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc-
Confidence 01111 112344443322 233456999999 7776666666667777777777888778888899999999999
Q ss_pred cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 272 KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 272 ~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
..+.|++|+.++....++..+. ..++..+..++..++|-.+
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHH
Confidence 5799999999888776665432 2456667788888877544
No 136
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=2.2e-14 Score=133.50 Aligned_cols=191 Identities=15% Similarity=0.251 Sum_probs=126.3
Q ss_pred CCCccccc-chH--HHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh----CCCcEEEeccc
Q psy3808 121 NVKWTDVA-GLE--AAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVSSS 193 (330)
Q Consensus 121 ~~~~~~~~-G~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~~~ 193 (330)
..+|++++ |.. .+...+...+. ..+.+.++++||||+|+|||+|++++++.+ ++..++++++.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~----------~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSK----------NPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHh----------CcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 46888877 322 23333333321 122334679999999999999999999976 34677888888
Q ss_pred chhccccChhHH---HHHHHHHHHHhcCCeEEEEeCCcc-----hhhHHHHHHHHhcCCCCCCcEEEEecCCCCC---Cc
Q psy3808 194 DLVSKWLGESEK---LVKTLFELARAHRPSIIFIDERID-----RGISNALFLLLSGVGNDMDGILVLGATNIPW---VL 262 (330)
Q Consensus 194 ~~~~~~~~~~~~---~~~~~f~~a~~~~~~ii~iDe~~~-----~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~---~l 262 (330)
++...+...... .+.. |.. ....+.+|+||| ++ ......|..++...... .+.+||++...|. .+
T Consensus 181 ~f~~~~~~~l~~~~~~~~~-~~~-~~~~~dvLiIDD-iq~l~~k~~~~e~lf~l~N~~~~~-~k~iIltsd~~P~~l~~l 256 (450)
T PRK14087 181 EFARKAVDILQKTHKEIEQ-FKN-EICQNDVLIIDD-VQFLSYKEKTNEIFFTIFNNFIEN-DKQLFFSSDKSPELLNGF 256 (450)
T ss_pred HHHHHHHHHHHHhhhHHHH-HHH-HhccCCEEEEec-cccccCCHHHHHHHHHHHHHHHHc-CCcEEEECCCCHHHHhhc
Confidence 876654433221 1111 111 123456999999 53 33456676766665443 3345554444453 35
Q ss_pred CHHHHhccc--cEEEecCCCHHHHHHHHHHHhcCCCC--CCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 263 DAAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRN--TISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 263 ~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~--~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
++.+.+||. ..+.+.+|+.++|..|+++.+...+. .+++..+..||..+.|.. +.+..++.+.
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~-R~L~gaL~~l 323 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDV-RKIKGSVSRL 323 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCH-HHHHHHHHHH
Confidence 789999985 46888999999999999999987664 588999999999999844 4566666544
No 137
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=1.6e-14 Score=129.89 Aligned_cols=189 Identities=19% Similarity=0.140 Sum_probs=127.0
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC------cEEEe-c
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS------TFFSV-S 191 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~------~~~~~-~ 191 (330)
..+..+++|+|++++++.+...+.. +..++.+||+||+|+|||++|+.+|+.+.+. +.... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4678899999999999999988732 2233679999999999999999999988331 11000 0
Q ss_pred ---c---cch----------h-ccc-c--C-----hhHHHHHHHHHHH----HhcCCeEEEEeCCcchhhHHHHHHHHhc
Q psy3808 192 ---S---SDL----------V-SKW-L--G-----ESEKLVKTLFELA----RAHRPSIIFIDERIDRGISNALFLLLSG 242 (330)
Q Consensus 192 ---~---~~~----------~-~~~-~--~-----~~~~~~~~~f~~a----~~~~~~ii~iDe~~~~~~~~~l~~~l~~ 242 (330)
+ ..+ . ..+ . + -.-..++.+.... .....-|++||| .+....+....++..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDe-Ad~l~~~aanaLLk~ 164 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDP-ADDMNRNAANAILKT 164 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEc-hhhcCHHHHHHHHHH
Confidence 0 000 0 000 0 0 0012233332222 223456999999 776666555555555
Q ss_pred CCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 243 VGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 243 ~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
++.+..++++|..|+.|..+.|.+++|+ ..+.|++|+.++...++.......+ +++..+..+++.+.|..+..+.-+
T Consensus 165 LEEpp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 165 LEEPPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred HhcCCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555566676667788888999999999 6899999999999999987433222 457778889999998777655443
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.61 E-value=1e-13 Score=138.39 Aligned_cols=200 Identities=22% Similarity=0.257 Sum_probs=130.9
Q ss_pred cccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccc--
Q psy3808 124 WTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKW-- 199 (330)
Q Consensus 124 ~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~-- 199 (330)
...|+|++.+++.+...+..... .......|...++|+||||||||++|++|+..+ .+.+++.++++++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~---gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh---cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 44689999999999888853210 011123343579999999999999999999987 34578888887764321
Q ss_pred ---cChhHH-----HHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCC--------CCCCcEEEEecCCCC--
Q psy3808 200 ---LGESEK-----LVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVG--------NDMDGILVLGATNIP-- 259 (330)
Q Consensus 200 ---~~~~~~-----~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~--------~~~~~v~vi~ttn~~-- 259 (330)
.|.... ....+....+..+.+||+||| .++....+.++.+++... .+..+++||+|||..
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~ 723 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD 723 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchH
Confidence 111100 011233344455668999999 334555666666665321 112356788899863
Q ss_pred -----------------------CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC---------CCCCCChHhHHHH
Q psy3808 260 -----------------------WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN---------TRNTISDENLKEL 307 (330)
Q Consensus 260 -----------------------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~---------~~~~~~~~~~~~l 307 (330)
..+.|+|+.|++.++.|.+++.+....|++.++.. ....+++..+..|
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L 803 (857)
T PRK10865 724 LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLL 803 (857)
T ss_pred HHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHH
Confidence 12457899999999999999999999988776644 2234677888888
Q ss_pred HHHcC--CCCHHHHHHHHhhc
Q psy3808 308 AKRTE--GYSGADISTLERNF 326 (330)
Q Consensus 308 a~~~~--g~~~~di~~l~~~a 326 (330)
+.... .|-.+.|+.++++-
T Consensus 804 ~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 804 SENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHcCCCccCChHHHHHHHHHH
Confidence 87431 23346676666543
No 139
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=3.2e-14 Score=128.66 Aligned_cols=185 Identities=21% Similarity=0.187 Sum_probs=124.3
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc------E----E
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST------F----F 188 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~------~----~ 188 (330)
..+.++++|+|++.+++.|...+.. +..++.+||+||+|+||+++|.++|+.+-+.. . .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4578899999999999999988732 23346799999999999999999999872111 0 0
Q ss_pred -------Eeccc--------ch--hcc-ccCh--------hHHHHHHHHHHH----HhcCCeEEEEeCCcchhhHHHHHH
Q psy3808 189 -------SVSSS--------DL--VSK-WLGE--------SEKLVKTLFELA----RAHRPSIIFIDERIDRGISNALFL 238 (330)
Q Consensus 189 -------~~~~~--------~~--~~~-~~~~--------~~~~~~~~f~~a----~~~~~~ii~iDe~~~~~~~~~l~~ 238 (330)
+-+|. ++ +.. +.+. .-..++.+.... ....+-|++||+ .+.........
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDe-ad~m~~~aana 160 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDT-ADEMNANAANA 160 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEec-hHhcCHHHHHH
Confidence 00000 00 000 0000 012234433332 234677999999 77666666666
Q ss_pred HHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 239 LLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 239 ~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
++..++....++++|.+|+.+..+.+.+++|+ ..+.|++|+.++...++..... ..++..+..+++.++|-.+..
T Consensus 161 LLK~LEepp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~----~~~~~~~~~l~~~s~Gsp~~A 235 (365)
T PRK07471 161 LLKVLEEPPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGP----DLPDDPRAALAALAEGSVGRA 235 (365)
T ss_pred HHHHHhcCCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHcCCCHHHH
Confidence 66666666667778888888989999999999 6699999999999888876531 224444567888888866644
Q ss_pred HH
Q psy3808 319 IS 320 (330)
Q Consensus 319 i~ 320 (330)
+.
T Consensus 236 l~ 237 (365)
T PRK07471 236 LR 237 (365)
T ss_pred HH
Confidence 43
No 140
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.59 E-value=7.5e-14 Score=134.16 Aligned_cols=197 Identities=20% Similarity=0.216 Sum_probs=133.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC---------CCcEEEec
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN---------NSTFFSVS 191 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~---------~~~~~~~~ 191 (330)
..-.+.|.|.++..+.|..++...+. ...|.+.++|+|+||||||++++.++.++. ...++.++
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 34446799999999999888754332 112323467999999999999999988761 13467888
Q ss_pred ccchhccc----------------cC-hhHHHHHHHHHHHH--hcCCeEEEEeCCcchhh---HHHHHHHHhcCCCCCCc
Q psy3808 192 SSDLVSKW----------------LG-ESEKLVKTLFELAR--AHRPSIIFIDERIDRGI---SNALFLLLSGVGNDMDG 249 (330)
Q Consensus 192 ~~~~~~~~----------------~~-~~~~~~~~~f~~a~--~~~~~ii~iDe~~~~~~---~~~l~~~l~~~~~~~~~ 249 (330)
|..+...+ .| .....+..+|.... .....||+||| +|... ...|+.++.........
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDE-ID~L~kK~QDVLYnLFR~~~~s~SK 902 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDE-IDYLITKTQKVLFTLFDWPTKINSK 902 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeeh-HhhhCccHHHHHHHHHHHhhccCCe
Confidence 85432111 01 12234556665442 23356999999 77443 45566666654444457
Q ss_pred EEEEecCCC---CCCcCHHHHhccccE-EEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHH---cCCCCHHHHHHH
Q psy3808 250 ILVLGATNI---PWVLDAAIRRRFEKR-IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKR---TEGYSGADISTL 322 (330)
Q Consensus 250 v~vi~ttn~---~~~l~~~l~~Rf~~~-i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~---~~g~~~~di~~l 322 (330)
++|||.+|. +..+++.+.+||... +.|++++.+++..|++..+......+++..+..+|+. ..|.....| .+
T Consensus 903 LiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKAL-DI 981 (1164)
T PTZ00112 903 LVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKAL-QI 981 (1164)
T ss_pred EEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHH-HH
Confidence 889999975 556778899988653 8899999999999999988865556788889999884 445555444 34
Q ss_pred Hhhc
Q psy3808 323 ERNF 326 (330)
Q Consensus 323 ~~~a 326 (330)
|+.|
T Consensus 982 LRrA 985 (1164)
T PTZ00112 982 CRKA 985 (1164)
T ss_pred HHHH
Confidence 4444
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.58 E-value=6.3e-14 Score=140.41 Aligned_cols=201 Identities=20% Similarity=0.256 Sum_probs=138.2
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccc---
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKW--- 199 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~--- 199 (330)
..|+|++.+++.+...+.... ........|...+||+||||||||++|++++..+ .+.+++.++++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~---~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR---AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh---ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 459999999999998885321 1112233455679999999999999999999987 24578888887764321
Q ss_pred --cChhHH-----HHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCC--------CCCCcEEEEecCCCCCC-
Q psy3808 200 --LGESEK-----LVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVG--------NDMDGILVLGATNIPWV- 261 (330)
Q Consensus 200 --~~~~~~-----~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~--------~~~~~v~vi~ttn~~~~- 261 (330)
.|.... ....+....+..+.+||+||| .++....+.|+..++... .+..+++||+|||....
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~ 721 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQF 721 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHh
Confidence 111111 012344455556778999999 344555666777665432 11346788999987321
Q ss_pred ------------------------cCHHHHhccccEEEecCCCHHHHHHHHHHHhcC-------C--CCCCChHhHHHHH
Q psy3808 262 ------------------------LDAAIRRRFEKRIYIALPELNARLFMFRHHLGN-------T--RNTISDENLKELA 308 (330)
Q Consensus 262 ------------------------l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~-------~--~~~~~~~~~~~la 308 (330)
+.|.|..|++.++.|.+++.+....|+...+.. . ...+++..+..|+
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~ 801 (852)
T TIGR03346 722 IQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLA 801 (852)
T ss_pred HhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHH
Confidence 347788899999999999999999888765542 2 2456888899999
Q ss_pred HHcC--CCCHHHHHHHHhhccc
Q psy3808 309 KRTE--GYSGADISTLERNFKV 328 (330)
Q Consensus 309 ~~~~--g~~~~di~~l~~~a~~ 328 (330)
+... .+..+.|.+++++.+.
T Consensus 802 ~~~~~~~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 802 EAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred HhCCCCCCCchhHHHHHHHHHH
Confidence 8743 5677888888877653
No 142
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=2.3e-13 Score=124.67 Aligned_cols=198 Identities=19% Similarity=0.213 Sum_probs=125.1
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----C----CcEEEec
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----N----STFFSVS 191 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----~----~~~~~~~ 191 (330)
+....++++|.++..+.|...+...+. +..+.+++|+||||||||+++++++..+. + ..++.++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 344456799999999999887743221 12235799999999999999999998762 1 3567777
Q ss_pred ccchhcc----------cc--C--------hhHHHHHHHHHHHH-hcCCeEEEEeCCcchhh---HHHHHHHHhc--C-C
Q psy3808 192 SSDLVSK----------WL--G--------ESEKLVKTLFELAR-AHRPSIIFIDERIDRGI---SNALFLLLSG--V-G 244 (330)
Q Consensus 192 ~~~~~~~----------~~--~--------~~~~~~~~~f~~a~-~~~~~ii~iDe~~~~~~---~~~l~~~l~~--~-~ 244 (330)
+....+. .. + ........++.... ...+.||+||| +|... ...+..++.. . .
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE-~d~L~~~~~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDE-IDYLVGDDDDLLYQLSRARSNGD 160 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECc-hhhhccCCcHHHHhHhccccccC
Confidence 7543211 00 0 01223344444433 24567899999 76552 2233343332 1 1
Q ss_pred CCCCcEEEEecCCCCC---CcCHHHHhccc-cEEEecCCCHHHHHHHHHHHhcC--CCCCCChHhHHHHH---HHcCCCC
Q psy3808 245 NDMDGILVLGATNIPW---VLDAAIRRRFE-KRIYIALPELNARLFMFRHHLGN--TRNTISDENLKELA---KRTEGYS 315 (330)
Q Consensus 245 ~~~~~v~vi~ttn~~~---~l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la---~~~~g~~ 315 (330)
....++.+|+++|.+. .+++.+.+||. ..+.|++++.++...|++..+.. .+..+++..+..++ ..+.|..
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 1225688888888875 57888888885 56999999999999999988752 22235555555544 4456766
Q ss_pred HHHHHHHHhhcc
Q psy3808 316 GADISTLERNFK 327 (330)
Q Consensus 316 ~~di~~l~~~a~ 327 (330)
...+ ++|+.|.
T Consensus 241 R~al-~~l~~a~ 251 (365)
T TIGR02928 241 RKAI-DLLRVAG 251 (365)
T ss_pred HHHH-HHHHHHH
Confidence 5443 4555553
No 143
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.57 E-value=1.9e-13 Score=126.45 Aligned_cols=198 Identities=21% Similarity=0.297 Sum_probs=125.8
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----CCcEEEecccch
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----NSTFFSVSSSDL 195 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----~~~~~~~~~~~~ 195 (330)
|....+.++|.++..+.|...+...+. +..+.+++|+||||||||++++.+++.+. +..++.+++...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 334556799999999998887743221 12235799999999999999999998872 355777877543
Q ss_pred hc----------cccC--------hhHHHHHHHHHHHHh-cCCeEEEEeCCcchhh----HHHHHHHHhcCCC-CCCcEE
Q psy3808 196 VS----------KWLG--------ESEKLVKTLFELARA-HRPSIIFIDERIDRGI----SNALFLLLSGVGN-DMDGIL 251 (330)
Q Consensus 196 ~~----------~~~~--------~~~~~~~~~f~~a~~-~~~~ii~iDe~~~~~~----~~~l~~~l~~~~~-~~~~v~ 251 (330)
.+ ...+ ........+...... ..+.||+||| +|... ...+..++..... ...++.
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE-~d~l~~~~~~~~l~~l~~~~~~~~~~~v~ 175 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDD-INYLFEKEGNDVLYSLLRAHEEYPGARIG 175 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC-HhHhhccCCchHHHHHHHhhhccCCCeEE
Confidence 21 1111 112233333333332 3567999999 76543 2334444332221 123677
Q ss_pred EEecCCCC---CCcCHHHHhccc-cEEEecCCCHHHHHHHHHHHhcCC--CCCCChHhHHHHHHHcCCCCH--HHHHHHH
Q psy3808 252 VLGATNIP---WVLDAAIRRRFE-KRIYIALPELNARLFMFRHHLGNT--RNTISDENLKELAKRTEGYSG--ADISTLE 323 (330)
Q Consensus 252 vi~ttn~~---~~l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~~--~~~~~~~~~~~la~~~~g~~~--~di~~l~ 323 (330)
+|+++|.+ ..+++.+.+||. ..+.|++++.++...|++..+... ...+++..+..+++.+.+.+| +.+..+|
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll 255 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLL 255 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 77777765 357788888874 468999999999999999887543 234677788888888844322 2333555
Q ss_pred hhc
Q psy3808 324 RNF 326 (330)
Q Consensus 324 ~~a 326 (330)
+.|
T Consensus 256 ~~a 258 (394)
T PRK00411 256 RRA 258 (394)
T ss_pred HHH
Confidence 554
No 144
>PRK09087 hypothetical protein; Validated
Probab=99.56 E-value=1.7e-13 Score=116.20 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred CCCCcccccc---hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 120 PNVKWTDVAG---LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 120 ~~~~~~~~~G---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
+..+|++++. +..+...+.+.. ..+.+.++|+||+|||||||+++++... +.. .++...+.
T Consensus 16 ~~~~~~~Fi~~~~N~~a~~~l~~~~-------------~~~~~~l~l~G~~GsGKThLl~~~~~~~-~~~--~i~~~~~~ 79 (226)
T PRK09087 16 PAYGRDDLLVTESNRAAVSLVDHWP-------------NWPSPVVVLAGPVGSGKTHLASIWREKS-DAL--LIHPNEIG 79 (226)
T ss_pred CCCChhceeecCchHHHHHHHHhcc-------------cCCCCeEEEECCCCCCHHHHHHHHHHhc-CCE--EecHHHcc
Confidence 4568999885 334444333211 1122359999999999999999999876 443 33433221
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--hhHHHHHHHHhcCCCCCCcEEEEecCCCC--CCc-CHHHHhccc
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERIDR--GISNALFLLLSGVGNDMDGILVLGATNIP--WVL-DAAIRRRFE 271 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~--~~~~~l~~~l~~~~~~~~~v~vi~ttn~~--~~l-~~~l~~Rf~ 271 (330)
.. .+..+ . ..+|+||+ ++. .....+..++..+... .+.+||+++..| |.. .+.+++||.
T Consensus 80 ~~-------~~~~~----~---~~~l~iDD-i~~~~~~~~~lf~l~n~~~~~-g~~ilits~~~p~~~~~~~~dL~SRl~ 143 (226)
T PRK09087 80 SD-------AANAA----A---EGPVLIED-IDAGGFDETGLFHLINSVRQA-GTSLLMTSRLWPSSWNVKLPDLKSRLK 143 (226)
T ss_pred hH-------HHHhh----h---cCeEEEEC-CCCCCCCHHHHHHHHHHHHhC-CCeEEEECCCChHHhccccccHHHHHh
Confidence 11 11111 1 14788999 543 3355677777665544 345666665444 333 688999885
Q ss_pred --cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 272 --KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 272 --~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
..+.+.+|+.+.+..+++..+...+..+++..+..|++...|-..+
T Consensus 144 ~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~ 191 (226)
T PRK09087 144 AATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFA 191 (226)
T ss_pred CCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHH
Confidence 6789999999999999999999988889999999999999875543
No 145
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.56 E-value=1.5e-13 Score=123.90 Aligned_cols=184 Identities=21% Similarity=0.299 Sum_probs=129.6
Q ss_pred cCCCCCcccccchHH---HHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh----CCCcEEEe
Q psy3808 118 EKPNVKWTDVAGLEA---AKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA----NNSTFFSV 190 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~----~~~~~~~~ 190 (330)
-.+..+|++++.-.. +......+. ...+.+.+.++||||+|+|||+|++|+++.. ++..++++
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va----------~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVA----------ENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHH----------hccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec
Confidence 346788998875333 333333322 1222345679999999999999999999987 33457888
Q ss_pred cccchhccccChhHHHHHHHHHHHHhcCCeEEEEeC----CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCC---cC
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE----RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWV---LD 263 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe----~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~---l~ 263 (330)
+...+...++......--.-|..-. .-.+++||+ .........+...+..+... .+-+|+++-..|.. +.
T Consensus 150 ~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~-~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 150 TSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN-GKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc-CCEEEEEcCCCchhhcccc
Confidence 8888776655444333333444444 446899999 22334567777777766554 34566656566655 45
Q ss_pred HHHHhcccc--EEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCC
Q psy3808 264 AAIRRRFEK--RIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGY 314 (330)
Q Consensus 264 ~~l~~Rf~~--~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~ 314 (330)
+.|.+||.. ++.+.+|+.+.|..|++..+...+..++++.+..+|.....-
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~n 279 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 899999866 578899999999999999999999999999999999988753
No 146
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.8e-14 Score=132.20 Aligned_cols=167 Identities=44% Similarity=0.664 Sum_probs=145.6
Q ss_pred CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc------
Q psy3808 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID------ 229 (330)
Q Consensus 156 ~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~------ 229 (330)
.++++++++||||+|||+++++++.+ +..+..++..+..++|.+..+..++.+|..+....|+++++|+ .+
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~-~~~~~~~~ 92 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE--GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE-IDALAPKR 92 (494)
T ss_pred CCCCCceeeCCCCCchhHHHHHHHhc--cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech-hhhcccCc
Confidence 46689999999999999999999998 3444888999999999999999999999999999999999999 22
Q ss_pred --------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCC
Q psy3808 230 --------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTI 299 (330)
Q Consensus 230 --------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~ 299 (330)
......+...++++. ... +++++.+|.+..+++++++ ||+..+.++.|+...+.+|+..........
T Consensus 93 ~~~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~- 169 (494)
T COG0464 93 SSDQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLG- 169 (494)
T ss_pred cccccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCc-
Confidence 334567778888887 556 8999999999999999998 999999999999999999998877665533
Q ss_pred ChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 300 SDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 300 ~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.+.++..++..+.||+++++..+|+.+.+
T Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~l~~~~~~ 198 (494)
T COG0464 170 PPGTGKTLAARTVGKSGADLGALAKEAAL 198 (494)
T ss_pred ccccHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 46789999999999999999999987754
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=1.6e-13 Score=121.76 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=121.6
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc----------------
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST---------------- 186 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~---------------- 186 (330)
.|++|+|++.+++.+...+.. + ..++.+||+||+|+||+++|.++|..+-+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 588999999999999998832 2 2236899999999999999999999872211
Q ss_pred -EEEecccchh-cc--------ccC-------h-hHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCC
Q psy3808 187 -FFSVSSSDLV-SK--------WLG-------E-SEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVG 244 (330)
Q Consensus 187 -~~~~~~~~~~-~~--------~~~-------~-~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~ 244 (330)
++.+.+.... ++ ..| . .-..++.+...+. .....|++||+ .+.....+...++..++
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~-ae~m~~~aaNaLLK~LE 149 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIED-AETMNEAAANALLKTLE 149 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEc-hhhcCHHHHHHHHHHHh
Confidence 1222221000 00 000 0 0123444443333 23557999999 66666555555555555
Q ss_pred CCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 245 NDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 245 ~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
++. ++++|..|+.++.+.|+++||+ ..+.|++|+.++...++........ .+.+...++..+.|-.+..+..+
T Consensus 150 EPp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~---~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 150 EPG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI---LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred CCC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc---chhHHHHHHHHcCCCHHHHHHHH
Confidence 555 5566667788899999999999 6699999999999988887643221 12235788888888777665543
No 148
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=99.55 E-value=6.9e-14 Score=96.29 Aligned_cols=72 Identities=36% Similarity=0.655 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKG 75 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~ 75 (330)
++++|++++++|++.|+.|+|++|+.+|..+++.|...++++ .++..++.++.++.+|++|+|.|+.++.+.
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e-~~~~~k~~lr~k~~eyl~RAE~LK~~l~~~ 73 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYE-TDAQRKEALRQKVLQYVSRAEELKALIASD 73 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999999999999999999999999988 779999999999999999999999998764
No 149
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.54 E-value=3.6e-13 Score=117.24 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=88.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc------chhccccChhHHH-HH--------------------HHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS------DLVSKWLGESEKL-VK--------------------TLF 211 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~--------------------~~f 211 (330)
.+++|.||||||||++|+++|..+ +.+++.+++. ++.+.+.+..... +. .++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l-g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR-DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 479999999999999999999988 7888887664 3333333221111 11 111
Q ss_pred HHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCC----C---------CCCcEEEEecCCCCC-----CcCHHHHhcc
Q psy3808 212 ELARAHRPSIIFIDERID---RGISNALFLLLSGVG----N---------DMDGILVLGATNIPW-----VLDAAIRRRF 270 (330)
Q Consensus 212 ~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~----~---------~~~~v~vi~ttn~~~-----~l~~~l~~Rf 270 (330)
. +.. .+.+|+||| ++ ....+.|+..++.-. . ..+++.+|+|+|+.. .+++++.+||
T Consensus 101 ~-A~~-~g~~lllDE-i~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~ 177 (262)
T TIGR02640 101 L-AVR-EGFTLVYDE-FTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL 177 (262)
T ss_pred H-HHH-cCCEEEEcc-hhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhc
Confidence 1 222 346999999 55 455666777665321 0 113567899999763 5688999999
Q ss_pred ccEEEecCCCHHHHHHHHHHHh
Q psy3808 271 EKRIYIALPELNARLFMFRHHL 292 (330)
Q Consensus 271 ~~~i~~~~p~~~~r~~il~~~l 292 (330)
..+.++.|+.++..+|++..+
T Consensus 178 -~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 178 -ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred -EEEECCCCCHHHHHHHHHHhh
Confidence 679999999999999988754
No 150
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.54 E-value=8.2e-14 Score=95.45 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3808 5 DKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKK 74 (330)
Q Consensus 5 ~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~ 74 (330)
++|++++++||++|++|+|++|+.+|.++++.|...++.+..++..++.++.++.+|++|+|.|++.+..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l~~ 73 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLVQG 73 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3999999999999999999999999999999999988787677788889999999999999999999854
No 151
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.54 E-value=7.4e-13 Score=114.78 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=70.5
Q ss_pred CeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCC------------CCCcCHHHHhccccEEEecCCCHHHHHH
Q psy3808 219 PSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNI------------PWVLDAAIRRRFEKRIYIALPELNARLF 286 (330)
Q Consensus 219 ~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~------------~~~l~~~l~~Rf~~~i~~~~p~~~~r~~ 286 (330)
|+|||||| .+..-...|..+...++.....++++ +||+ |+-++..|+.|. .+|...+++.++.++
T Consensus 292 pGVLFIDE-vHmLDIE~FsFlnrAlEse~aPIii~-AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~py~~~Eire 368 (450)
T COG1224 292 PGVLFIDE-VHMLDIECFSFLNRALESELAPIIIL-ATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTRPYSREEIRE 368 (450)
T ss_pred cceEEEec-hhhhhHHHHHHHHHHhhcccCcEEEE-EcCCceeeecccCCcCCCCCCHhhhhhe-eEEecCCCCHHHHHH
Confidence 66777777 55554555555555555555566655 5554 677889999998 779999999999999
Q ss_pred HHHHHhcCCCCCCChHhHHHHHHHcCC
Q psy3808 287 MFRHHLGNTRNTISDENLKELAKRTEG 313 (330)
Q Consensus 287 il~~~l~~~~~~~~~~~~~~la~~~~g 313 (330)
|++..+....+.+++..++.|+....-
T Consensus 369 Ii~iRa~ee~i~l~~~Ale~L~~ig~e 395 (450)
T COG1224 369 IIRIRAKEEDIELSDDALEYLTDIGEE 395 (450)
T ss_pred HHHHhhhhhccccCHHHHHHHHhhchh
Confidence 999999999999999999999887554
No 152
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.53 E-value=3.1e-13 Score=118.79 Aligned_cols=96 Identities=21% Similarity=0.214 Sum_probs=62.6
Q ss_pred CeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCC------------CCCCcCHHHHhccccEEEecCCCHHHHHH
Q psy3808 219 PSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATN------------IPWVLDAAIRRRFEKRIYIALPELNARLF 286 (330)
Q Consensus 219 ~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn------------~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~ 286 (330)
|+|+|||| .+-.-...|..+-..++....+++++ +|| .|+-++..|+.|+ .+|...+++.++..+
T Consensus 279 pGVLFIDE-vHmLDiEcFsfLnralEs~~sPiiIl-ATNRg~~~irGt~~~sphGiP~DlLDRl-lII~t~py~~~ei~~ 355 (398)
T PF06068_consen 279 PGVLFIDE-VHMLDIECFSFLNRALESELSPIIIL-ATNRGITKIRGTDIISPHGIPLDLLDRL-LIIRTKPYSEEEIKQ 355 (398)
T ss_dssp E-EEEEES-GGGSBHHHHHHHHHHHTSTT--EEEE-EES-SEEE-BTTS-EEETT--HHHHTTE-EEEEE----HHHHHH
T ss_pred cceEEecc-hhhccHHHHHHHHHHhcCCCCcEEEE-ecCceeeeccCccCcCCCCCCcchHhhc-EEEECCCCCHHHHHH
Confidence 77888888 66555555555555555555666655 555 3567888999999 889999999999999
Q ss_pred HHHHHhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 287 MFRHHLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 287 il~~~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
|++..+...++.+++..+..|+......|-+
T Consensus 356 Il~iR~~~E~v~i~~~al~~L~~ig~~~SLR 386 (398)
T PF06068_consen 356 ILKIRAKEEDVEISEDALDLLTKIGVETSLR 386 (398)
T ss_dssp HHHHHHHHCT--B-HHHHHHHHHHHHHS-HH
T ss_pred HHHhhhhhhcCcCCHHHHHHHHHHhhhccHH
Confidence 9999999999999999998888776554433
No 153
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.52 E-value=2.9e-13 Score=112.16 Aligned_cols=146 Identities=23% Similarity=0.233 Sum_probs=101.1
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCC-----------------------cEEEecccchhccccChhHHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNS-----------------------TFFSVSSSDLVSKWLGESEKLVKTLFELA 214 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a 214 (330)
++.+||+||+|+|||++|+.++..+.+. .+..+.... ... .-..++.+...+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~--~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSI--KVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcC--CHHHHHHHHHHH
Confidence 3679999999999999999999997321 011111110 001 123444444444
Q ss_pred Hh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHH
Q psy3808 215 RA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRH 290 (330)
Q Consensus 215 ~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~ 290 (330)
.. ....||+||| .+.........++..++...+.+.+|.+|+.+..+.+++.+|+ ..+.|++|+.++...+++.
T Consensus 89 ~~~~~~~~~kviiide-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 89 SRTPQESGRRVVIIED-AERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC-QVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred ccCcccCCeEEEEEec-hhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc-EEeeCCCCCHHHHHHHHHH
Confidence 33 3456999999 7766555555555555555566777777777789999999999 5799999999998888876
Q ss_pred HhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 291 HLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 291 ~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
. + +++..+..++..++|..+
T Consensus 167 ~----g--i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 167 Q----G--ISEEAAELLLALAGGSPG 186 (188)
T ss_pred c----C--CCHHHHHHHHHHcCCCcc
Confidence 5 3 577789999999988643
No 154
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.51 E-value=5e-13 Score=105.59 Aligned_cols=137 Identities=45% Similarity=0.664 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChhHHH
Q psy3808 129 GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGESEKL 206 (330)
Q Consensus 129 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 206 (330)
|.+.+.+.+...+.. .+.++++++||||||||++++.++..+ .+.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 556666777666522 133589999999999999999999987 235677777766544322211111
Q ss_pred ---HHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCCCC---CCcEEEEecCCCCC--CcCHHHHhccccEEE
Q psy3808 207 ---VKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVGND---MDGILVLGATNIPW--VLDAAIRRRFEKRIY 275 (330)
Q Consensus 207 ---~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~~~---~~~v~vi~ttn~~~--~l~~~l~~Rf~~~i~ 275 (330)
....+.......+.+|++|| ++. .....+...+...... ..++.+|++++.+. .+++.+.+||+..+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~ 148 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDE-IDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIV 148 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeC-hhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEee
Confidence 11222334445678999999 764 3445566666665432 35678888888776 788899999987777
Q ss_pred ecC
Q psy3808 276 IAL 278 (330)
Q Consensus 276 ~~~ 278 (330)
+++
T Consensus 149 ~~~ 151 (151)
T cd00009 149 IPL 151 (151)
T ss_pred cCC
Confidence 663
No 155
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=8.1e-13 Score=118.65 Aligned_cols=165 Identities=17% Similarity=0.135 Sum_probs=113.5
Q ss_pred Ccccccc-hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc---------------
Q psy3808 123 KWTDVAG-LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--------------- 186 (330)
Q Consensus 123 ~~~~~~G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--------------- 186 (330)
.|+.|+| ++.+++.+...+. .+..++.+||+||+|+||+++|+++++.+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5788999 8889999988773 223346789999999999999999999872211
Q ss_pred --------EEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEe
Q psy3808 187 --------FFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLG 254 (330)
Q Consensus 187 --------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ 254 (330)
+..+.+. +... .-..++.+.+... ....-|++||+ .+.....+...++..++++.+.+++|.
T Consensus 72 ~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~-a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEH-ADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred HhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeeh-HhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 2222111 0101 1123344433322 23446999999 887777777777777777778888888
Q ss_pred cCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHc
Q psy3808 255 ATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRT 311 (330)
Q Consensus 255 ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~ 311 (330)
+|+.+..+.|+++||+ ..+.|++|+.++....++. .+ ++......++..+
T Consensus 146 ~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~~ 195 (329)
T PRK08058 146 LTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGLT 195 (329)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHHc
Confidence 9988999999999999 6699999999887666653 23 3444444555553
No 156
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=99.50 E-value=2.3e-13 Score=94.08 Aligned_cols=71 Identities=27% Similarity=0.432 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3808 4 FDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKG 75 (330)
Q Consensus 4 ~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~ 75 (330)
..+|++++++|+++|+.|+|++|+.+|.++++.|...++.+ .++..++.++.++.+|++|++.|++.+.+.
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e-~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~ 73 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGT-KDEAKKKNLRQKISEYMDRAEAIKKRLDQE 73 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999998 678899999999999999999999998764
No 157
>KOG1969|consensus
Probab=99.49 E-value=6.1e-13 Score=124.73 Aligned_cols=203 Identities=21% Similarity=0.235 Sum_probs=138.8
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhccc----C--Ccc-----------ccc----CCCCCC-cceEEECCCCCch
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPI----K--FPQ-----------LFT----GKRVPW-KGILLFGPPGTGK 171 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~----~--~~~-----------~~~----~~~~~~-~~ill~GppGtGK 171 (330)
.++-++.+..|.|+.|.+.+-+.+..++...- + ..+ .+. ....|+ +-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 56778899999999999998888877763211 0 001 111 112233 4588999999999
Q ss_pred HHHHHHHHHHhCCCcEEEecccchhccccChhHHHHH-HHHHHHHh---cCCeEEEEeCCcchhh---HHHHHHHHhcCC
Q psy3808 172 SYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVK-TLFELARA---HRPSIIFIDERIDRGI---SNALFLLLSGVG 244 (330)
Q Consensus 172 T~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~a~~---~~~~ii~iDe~~~~~~---~~~l~~~l~~~~ 244 (330)
||||+.+|+.. |..++.+++++-.+. ......+. .++..... ..|.+++||| +|-.. .+.++.++..-.
T Consensus 340 TTLAHViAkqa-GYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDE-IDGa~~~~Vdvilslv~a~~ 415 (877)
T KOG1969|consen 340 TTLAHVIAKQA-GYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDE-IDGAPRAAVDVILSLVKATN 415 (877)
T ss_pred hHHHHHHHHhc-CceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEec-ccCCcHHHHHHHHHHHHhhc
Confidence 99999999999 899999999875321 11122222 22222222 5788999999 87655 555555554111
Q ss_pred C-----CC--C-----------cEEEEecCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhH
Q psy3808 245 N-----DM--D-----------GILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENL 304 (330)
Q Consensus 245 ~-----~~--~-----------~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~ 304 (330)
. .. + .=-||+.+|. ...|+|+. -|..++.|++|......+-++..|...+...+...+
T Consensus 416 k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL 493 (877)
T KOG1969|consen 416 KQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKAL 493 (877)
T ss_pred chhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHH
Confidence 0 00 0 0135666665 45677765 688899999999999999999999999988888899
Q ss_pred HHHHHHcCCCCHHHHHHH
Q psy3808 305 KELAKRTEGYSGADISTL 322 (330)
Q Consensus 305 ~~la~~~~g~~~~di~~l 322 (330)
..|++.+++...+=|+.|
T Consensus 494 ~~L~el~~~DIRsCINtL 511 (877)
T KOG1969|consen 494 NALCELTQNDIRSCINTL 511 (877)
T ss_pred HHHHHHhcchHHHHHHHH
Confidence 999999997666655554
No 158
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.8e-13 Score=123.35 Aligned_cols=149 Identities=24% Similarity=0.259 Sum_probs=106.0
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC---------------------
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN--------------------- 184 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~--------------------- 184 (330)
+++|.+.+...+..++... +..++.+||+||||+|||++|.++|+.+.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 5778888888888776321 112235999999999999999999999831
Q ss_pred --CcEEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 185 --STFFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
..++.+++++....- -....++.+-..... .+.-||+||| .|....++...++..++.+..++.+|.+||.
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiide-ad~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDE-ADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCc-HHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 356667766543321 123334444433322 3456999999 8888887777777777777788999999999
Q ss_pred CCCcCHHHHhccccEEEecCCCHHHHHHHH
Q psy3808 259 PWVLDAAIRRRFEKRIYIALPELNARLFMF 288 (330)
Q Consensus 259 ~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il 288 (330)
++.+-+.+++|+ ..+.|++|+........
T Consensus 149 ~~~il~tI~SRc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 149 PSKILPTIRSRC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred hhhccchhhhcc-eeeecCCchHHHHHHHh
Confidence 999999999999 56888876655544433
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=1.1e-12 Score=117.08 Aligned_cols=154 Identities=20% Similarity=0.215 Sum_probs=105.7
Q ss_pred CCCcceEEECCCCCchHHHHHHHHHHhCCC-----------------------cEEEecccchhccccChhHHHHHHHHH
Q psy3808 156 VPWKGILLFGPPGTGKSYLAKAVATEANNS-----------------------TFFSVSSSDLVSKWLGESEKLVKTLFE 212 (330)
Q Consensus 156 ~~~~~ill~GppGtGKT~la~~la~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~ 212 (330)
..++.+||+||+|+|||++|+++|+.+.+. .++.+.+..- ++.. .-..++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~i--~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKTI--KVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCCC--CHHHHHHHHH
Confidence 344789999999999999999999988221 1222222110 0000 1233444443
Q ss_pred HHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHH
Q psy3808 213 LAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMF 288 (330)
Q Consensus 213 ~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il 288 (330)
.+. ....-|++||+ .+....++...++..++++.+++++|.+|+.+..+.|+++||+ ..+.|++|+.++....+
T Consensus 97 ~~~~~~~~~~~kv~iI~~-a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEP-AEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC-QQQACPLPSNEESLQWL 174 (328)
T ss_pred HHhhccccCCCeEEEECC-hhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc-eeeeCCCcCHHHHHHHH
Confidence 333 34456899999 8877777777777777777788999999999999999999999 45999999999887777
Q ss_pred HHHhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 289 RHHLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
..... ..++.....+++.+.|-.+..
T Consensus 175 ~~~~~----~~~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 175 QQALP----ESDERERIELLTLAGGSPLRA 200 (328)
T ss_pred HHhcc----cCChHHHHHHHHHcCCCHHHH
Confidence 65431 234555667777888755543
No 160
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.48 E-value=1.7e-13 Score=121.94 Aligned_cols=161 Identities=22% Similarity=0.319 Sum_probs=100.7
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC------CcEEEec--
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN------STFFSVS-- 191 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~------~~~~~~~-- 191 (330)
.+..|++|+|++++++.+.-.+..+ ...++||.||||||||++|++++..++. .++-..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 4678999999999999888544221 1258999999999999999999998832 1110000
Q ss_pred c---------cchh---------------ccccChh--HHHH---HHHHHHH--HhcCCeEEEEeC--CcchhhHHHHHH
Q psy3808 192 S---------SDLV---------------SKWLGES--EKLV---KTLFELA--RAHRPSIIFIDE--RIDRGISNALFL 238 (330)
Q Consensus 192 ~---------~~~~---------------~~~~~~~--~~~~---~~~f~~a--~~~~~~ii~iDe--~~~~~~~~~l~~ 238 (330)
+ ..+. ....|.. ...+ ...|..- .....++||+|| .++...+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle 150 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLD 150 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHH
Confidence 0 0000 0011110 0000 0001100 011235999999 344556667777
Q ss_pred HHhcCC----------CCCCcEEEEecCCCCC-CcCHHHHhccccEEEecCCCH-HHHHHHHHHHh
Q psy3808 239 LLSGVG----------NDMDGILVLGATNIPW-VLDAAIRRRFEKRIYIALPEL-NARLFMFRHHL 292 (330)
Q Consensus 239 ~l~~~~----------~~~~~v~vi~ttn~~~-~l~~~l~~Rf~~~i~~~~p~~-~~r~~il~~~l 292 (330)
.++.-. ....++++|+|+|+.+ .+.++++.||...+.+++|.. ++|.+|++...
T Consensus 151 ~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 151 VAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 765422 0224688998888754 588999999999999998876 88899988743
No 161
>PHA02244 ATPase-like protein
Probab=99.48 E-value=3e-12 Score=113.69 Aligned_cols=121 Identities=22% Similarity=0.254 Sum_probs=77.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc---ccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh---h
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK---WLGESEKLVKTLFELARAHRPSIIFIDERIDRG---I 232 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~---~ 232 (330)
.++||+||||||||++|+++|..+ +.+|+.++...-... +..........-+-.+. ..+++|+||| ++.. .
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDE-Id~a~p~v 196 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDE-IDASIPEA 196 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeC-cCcCCHHH
Confidence 469999999999999999999998 789988874210000 11111111111122222 3457999999 7644 3
Q ss_pred HHHHHHHHhcC--------CCCCCcEEEEecCCCC-----------CCcCHHHHhccccEEEecCCCHHH
Q psy3808 233 SNALFLLLSGV--------GNDMDGILVLGATNIP-----------WVLDAAIRRRFEKRIYIALPELNA 283 (330)
Q Consensus 233 ~~~l~~~l~~~--------~~~~~~v~vi~ttn~~-----------~~l~~~l~~Rf~~~i~~~~p~~~~ 283 (330)
...+...++.- .....++.+|+|+|++ ..+++++++|| ..+.++.|+..+
T Consensus 197 q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E 265 (383)
T PHA02244 197 LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIE 265 (383)
T ss_pred HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHH
Confidence 34444555321 1123568999999974 35789999999 579999998433
No 162
>KOG2035|consensus
Probab=99.46 E-value=3.1e-12 Score=107.35 Aligned_cols=189 Identities=17% Similarity=0.158 Sum_probs=134.2
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEE--Ee--
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFF--SV-- 190 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~--~~-- 190 (330)
++-++.+.+++.+.+.++....++.... ..-.| ++++|||+|+||-|.+.++.+++-|..+- .+
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~----------~~d~P--Hll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSS----------TGDFP--HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcc----------cCCCC--eEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 3456778889999999999999887652 11223 89999999999999999999988443211 00
Q ss_pred ----ccc-------chhcc--------ccChh-HHHHHHHHHHHHhc---------CCeEEEEeCCcchhh---HHHHHH
Q psy3808 191 ----SSS-------DLVSK--------WLGES-EKLVKTLFELARAH---------RPSIIFIDERIDRGI---SNALFL 238 (330)
Q Consensus 191 ----~~~-------~~~~~--------~~~~~-~~~~~~~f~~a~~~---------~~~ii~iDe~~~~~~---~~~l~~ 238 (330)
+++ .+.+. ..|.. +-.+..+.....+. ...|++|.| .|... +.++.+
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~e-ad~LT~dAQ~aLRR 149 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINE-ADELTRDAQHALRR 149 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEec-hHhhhHHHHHHHHH
Confidence 110 01111 12222 33444554443332 234888887 66544 445555
Q ss_pred HHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 239 LLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 239 ~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
-+..+ ..++.+|..+|....+-+++++|+ ..+.+|.|+.++...++...+.+.+..+++.-+..+|+.++|-....
T Consensus 150 TMEkY---s~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrA 225 (351)
T KOG2035|consen 150 TMEKY---SSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRA 225 (351)
T ss_pred HHHHH---hcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHH
Confidence 55554 355777778888888999999998 77999999999999999999999999999999999999999877766
Q ss_pred HH
Q psy3808 319 IS 320 (330)
Q Consensus 319 i~ 320 (330)
|-
T Consensus 226 ll 227 (351)
T KOG2035|consen 226 LL 227 (351)
T ss_pred HH
Confidence 53
No 163
>PRK04132 replication factor C small subunit; Provisional
Probab=99.45 E-value=2.1e-12 Score=126.68 Aligned_cols=163 Identities=18% Similarity=0.116 Sum_probs=126.1
Q ss_pred CCCCCcceEEEC--CCCCchHHHHHHHHHHhC----CCcEEEecccchhccccChhHHHHHHHHHHHHhc------CCeE
Q psy3808 154 KRVPWKGILLFG--PPGTGKSYLAKAVATEAN----NSTFFSVSSSDLVSKWLGESEKLVKTLFELARAH------RPSI 221 (330)
Q Consensus 154 ~~~~~~~ill~G--ppGtGKT~la~~la~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~------~~~i 221 (330)
...|.-+-+..| |++.||||+|+++|+++. +..++.+++++..+ -..++.+....... +..|
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KV 633 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKI 633 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEE
Confidence 344555677889 999999999999999972 34689999987432 12344443322211 2369
Q ss_pred EEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCCh
Q psy3808 222 IFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISD 301 (330)
Q Consensus 222 i~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~ 301 (330)
++||| .|.....+...++..++.+...+.+|++||.+..+.++++||| ..+.|++|+.++....++..+...+..+++
T Consensus 634 vIIDE-aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~ 711 (846)
T PRK04132 634 IFLDE-ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTE 711 (846)
T ss_pred EEEEC-cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 99999 7777666666666666666677899999999999999999999 679999999999999999998887877889
Q ss_pred HhHHHHHHHcCCCCHHHHHHHHh
Q psy3808 302 ENLKELAKRTEGYSGADISTLER 324 (330)
Q Consensus 302 ~~~~~la~~~~g~~~~di~~l~~ 324 (330)
..+..++..+.|..+..|..+-.
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999988877766543
No 164
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=2.1e-12 Score=113.53 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=93.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc--ccChhHH----------HHHHHHHHHHhcCCeEEEEeC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK--WLGESEK----------LVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~----------~~~~~f~~a~~~~~~ii~iDe 226 (330)
++++|.||||||||++++.+|..+ +.+++.+++...... .+|...- .....+..|. ..++++++||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l-~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARL-NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHH-CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 579999999999999999999999 789998877654433 3332110 0112223333 2457899999
Q ss_pred Ccchh---hHHHHHHHHhc-----CCC------CCCcEEEEecCCCCC------------CcCHHHHhccccEEEecCCC
Q psy3808 227 RIDRG---ISNALFLLLSG-----VGN------DMDGILVLGATNIPW------------VLDAAIRRRFEKRIYIALPE 280 (330)
Q Consensus 227 ~~~~~---~~~~l~~~l~~-----~~~------~~~~v~vi~ttn~~~------------~l~~~l~~Rf~~~i~~~~p~ 280 (330)
++.. ....+..+++. +.. ....+.||+|+|+.. .++.+++.||-.++.++.|+
T Consensus 143 -in~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~ 221 (327)
T TIGR01650 143 -YDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLE 221 (327)
T ss_pred -hhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCC
Confidence 6644 44555556652 111 224588999999854 36899999997778999999
Q ss_pred HHHHHHHHHHHhc
Q psy3808 281 LNARLFMFRHHLG 293 (330)
Q Consensus 281 ~~~r~~il~~~l~ 293 (330)
.++-..|+.....
T Consensus 222 ~e~E~~Il~~~~~ 234 (327)
T TIGR01650 222 HDNEAAIVLAKAK 234 (327)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999987653
No 165
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=1.8e-11 Score=108.66 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=103.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCC-----------------------cEEEecccchhccccChhHHHHHHHHHH-
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNS-----------------------TFFSVSSSDLVSKWLGESEKLVKTLFEL- 213 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~- 213 (330)
++.+||+||+|+||+++|+++|+.+-+. .++.+.+. .++.. .-..++.+.+.
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHHHHH
Confidence 4789999999999999999999987211 01112111 01111 12234443333
Q ss_pred ---HHhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHH
Q psy3808 214 ---ARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRH 290 (330)
Q Consensus 214 ---a~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~ 290 (330)
+.....-|++||+ .+.....+...++..++++.+++++|.+|+.+..+.|+++||+ ..+.|++|+.++....+..
T Consensus 100 ~~~~~~g~~KV~iI~~-a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 100 SQHAQQGGNKVVYIQG-AERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred hhccccCCceEEEEec-hhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 2334456999999 8888888888888888888899999999999999999999999 5689999998888777665
Q ss_pred HhcCCCCCCChHhHHHHHHHcCCCCHHH
Q psy3808 291 HLGNTRNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 291 ~l~~~~~~~~~~~~~~la~~~~g~~~~d 318 (330)
... .+......+++.+.|-.+..
T Consensus 178 ~~~-----~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 178 QSS-----AEISEILTALRINYGRPLLA 200 (325)
T ss_pred Hhc-----cChHHHHHHHHHcCCCHHHH
Confidence 421 13334556666676654433
No 166
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=1.2e-11 Score=110.75 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=107.5
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCCC-----------------------cEEEecccch-hccccChhHHHHHHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANNS-----------------------TFFSVSSSDL-VSKWLGESEKLVKTLFE 212 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~~-----------------------~~~~~~~~~~-~~~~~~~~~~~~~~~f~ 212 (330)
.++.+||+||+|+||+++|.++|..+-+. .++.+.+..- ..-.+.+.+.....+..
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 34789999999999999999999987211 1122222100 00011122223333333
Q ss_pred HHHhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHh
Q psy3808 213 LARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHL 292 (330)
Q Consensus 213 ~a~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l 292 (330)
.......-|++||+ .+.....+...++..++++.+++++|.+|+.+..+.|.++||+. .+.|++|+.++....+...
T Consensus 103 ~~~~g~~kV~iI~~-ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~~~~~~~~~~L~~~- 179 (334)
T PRK07993 103 HARLGGAKVVWLPD-AALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR-LHYLAPPPEQYALTWLSRE- 179 (334)
T ss_pred ccccCCceEEEEcc-hHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc-cccCCCCCHHHHHHHHHHc-
Confidence 33344556999999 88888888888888888888899999999999999999999996 5899999988877666432
Q ss_pred cCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 293 GNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 293 ~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
.+ .++.....+++.++|-.+..+
T Consensus 180 --~~--~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 180 --VT--MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred --cC--CCHHHHHHHHHHcCCCHHHHH
Confidence 22 455567778888888665444
No 167
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.40 E-value=5e-12 Score=112.84 Aligned_cols=162 Identities=23% Similarity=0.300 Sum_probs=105.3
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC------CcEEEec
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN------STFFSVS 191 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~------~~~~~~~ 191 (330)
..+...|++|+|+++++..|...++.| ...++||.||+|||||++|++++..+.. .+|. ..
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~ 76 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SH 76 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CC
Confidence 356779999999999999998877442 1258999999999999999999887732 1222 00
Q ss_pred cc-------chhc---------------cc----cChhHHHH------HHHHHHH---------HhcCCeEEEEeC--Cc
Q psy3808 192 SS-------DLVS---------------KW----LGESEKLV------KTLFELA---------RAHRPSIIFIDE--RI 228 (330)
Q Consensus 192 ~~-------~~~~---------------~~----~~~~~~~~------~~~f~~a---------~~~~~~ii~iDe--~~ 228 (330)
+. ...+ .| .+-++..+ ...|... .....++||+|| .+
T Consensus 77 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 77 PSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred CCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 10 0000 00 01111110 1111111 012246999999 44
Q ss_pred chhhHHHHHHHHhcCC----------CCCCcEEEEecCCCCC-CcCHHHHhccccEEEecCCC-HHHHHHHHHHHh
Q psy3808 229 DRGISNALFLLLSGVG----------NDMDGILVLGATNIPW-VLDAAIRRRFEKRIYIALPE-LNARLFMFRHHL 292 (330)
Q Consensus 229 ~~~~~~~l~~~l~~~~----------~~~~~v~vi~ttn~~~-~l~~~l~~Rf~~~i~~~~p~-~~~r~~il~~~l 292 (330)
+...+..++..++... ....++++|+|.|+.+ .+.+++..||...+.+..|+ .+.+.+|+++..
T Consensus 157 ~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 5566677777765311 0124688888888765 68999999999999999997 589999998753
No 168
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1e-11 Score=106.24 Aligned_cols=197 Identities=25% Similarity=0.382 Sum_probs=124.0
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccC---C--CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh-cccc
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTG---K--RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV-SKWL 200 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~~ 200 (330)
++|++.+|+.|.-+|-... .++... . -....++||.||+|||||.||+.+|+.+ +.||-..++..+. ..|+
T Consensus 63 VIGQe~AKKvLsVAVYNHY--KRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYV 139 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHY--KRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYV 139 (408)
T ss_pred eecchhhhceeeeeehhHH--HHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-CCCeeeccccchhhcccc
Confidence 7899999988865442211 111111 0 0123579999999999999999999999 7999888887775 4688
Q ss_pred Chh-HHHHHHHHHHHH----hcCCeEEEEeCCcc-----------------hhhHHHHHHHHhcCCCC------------
Q psy3808 201 GES-EKLVKTLFELAR----AHRPSIIFIDERID-----------------RGISNALFLLLSGVGND------------ 246 (330)
Q Consensus 201 ~~~-~~~~~~~f~~a~----~~~~~ii~iDe~~~-----------------~~~~~~l~~~l~~~~~~------------ 246 (330)
|+. +..+..+.+.+. ....+|||||| +| .+++.+|+.++.+-...
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDE-IDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Q 218 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDE-IDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQ 218 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEec-hhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCcc
Confidence 876 333444444332 23457999999 44 56778899998864321
Q ss_pred ------CCcEEEEecCCC---------------------------------------C-----CCcCHHHHhccccEEEe
Q psy3808 247 ------MDGILVLGATNI---------------------------------------P-----WVLDAAIRRRFEKRIYI 276 (330)
Q Consensus 247 ------~~~v~vi~ttn~---------------------------------------~-----~~l~~~l~~Rf~~~i~~ 276 (330)
..+++||+...- | +.+-|.|.-|++.+..+
T Consensus 219 e~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L 298 (408)
T COG1219 219 EFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATL 298 (408)
T ss_pred ceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeeh
Confidence 123566543200 0 01347777899888999
Q ss_pred cCCCHHHHHHHHHH-----------HhcC--CCCCCChHhHHHHHHHc--CCCCHHHHHHHHhhcc
Q psy3808 277 ALPELNARLFMFRH-----------HLGN--TRNTISDENLKELAKRT--EGYSGADISTLERNFK 327 (330)
Q Consensus 277 ~~p~~~~r~~il~~-----------~l~~--~~~~~~~~~~~~la~~~--~g~~~~di~~l~~~a~ 327 (330)
...+.++...|+.. ++.- ....+++..+..+|+.. .+--.+-|..++.+.+
T Consensus 299 ~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~l 364 (408)
T COG1219 299 EELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELL 364 (408)
T ss_pred hhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 99999988887742 2222 22335667777777653 2222234555554443
No 169
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=99.40 E-value=4.4e-12 Score=87.91 Aligned_cols=72 Identities=58% Similarity=0.946 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKG 75 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~ 75 (330)
.+++|++++++|++.|..|+|++|+.+|.++++.|...++.+ .++..+..++.++.+|++|+|.|+..+.+.
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e-~~~~~k~~~~~k~~eyl~RaE~LK~~l~~~ 73 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYE-KNPKSKESIRAKCTEYLDRAEKLKEYLAKK 73 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999888 568889999999999999999999998653
No 170
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=99.39 E-value=3.8e-12 Score=87.41 Aligned_cols=68 Identities=25% Similarity=0.493 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHH
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEY 71 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~ 71 (330)
.+.+|++++++|++.|++|+|++|+.+|.++++.|...++++ .++..++.++.++.+|+.|+|++...
T Consensus 2 ~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e-~~~~~k~~ir~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 2 YLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGD-SSPERREAVKRKIAEYLKRAEEILRL 69 (75)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999998 77999999999999999999999864
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=2.3e-11 Score=107.78 Aligned_cols=155 Identities=22% Similarity=0.223 Sum_probs=103.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCc--------------------EEEe--cccchhccc-cChhHHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNST--------------------FFSV--SSSDLVSKW-LGESEKLVKTLFELA 214 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~--------------------~~~~--~~~~~~~~~-~~~~~~~~~~~f~~a 214 (330)
++.+||+||+|+||+++|.++|..+-+.. ++.+ .+..-..+. ..-.-..++.+.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 36799999999999999999998772110 1111 110000000 000123344444433
Q ss_pred Hh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHH
Q psy3808 215 RA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRH 290 (330)
Q Consensus 215 ~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~ 290 (330)
.. ...-|++||+ .+.....+...++..++++.++++||.+|+.++.+.|.++||+ ..+.|++|+.++....+..
T Consensus 106 ~~~p~~g~~kV~iI~~-ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 106 ALTPQYGIAQVVIVDP-ADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred hhCcccCCcEEEEecc-HhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH
Confidence 32 2345999999 8877777777777777778788888889999999999999999 5689999998877666643
Q ss_pred HhcCCCCCCChHhHHHHHHHcCCCCHHHHH
Q psy3808 291 HLGNTRNTISDENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 291 ~l~~~~~~~~~~~~~~la~~~~g~~~~di~ 320 (330)
.+ .++.+...++..+.|-.+..+.
T Consensus 184 ----~~--~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 184 ----QG--VSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred ----cC--CChHHHHHHHHHcCCCHHHHHH
Confidence 22 3555566778888886665443
No 172
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=99.38 E-value=7.2e-12 Score=85.60 Aligned_cols=69 Identities=54% Similarity=0.844 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYL 72 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l 72 (330)
++++|+.++++|+++|+.|+|++|+.+|..+++.|...++.+ .+++.++.+++++.+|+.|++.|++.+
T Consensus 1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~-~~~~~~~~l~~k~~~yl~RAE~lk~~L 69 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSE-SNPERRQALRQKMKEYLERAEKLKEYL 69 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478999999999999999999999999999999999999888 568888899999999999999999864
No 173
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.38 E-value=1.8e-13 Score=112.14 Aligned_cols=46 Identities=41% Similarity=0.634 Sum_probs=37.6
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
.|+||+|++.+|+.+.-+..- .+++||+||||||||++|+.+...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999877631 3689999999999999999999877
No 174
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.6e-11 Score=118.28 Aligned_cols=185 Identities=24% Similarity=0.335 Sum_probs=136.1
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNST 186 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~ 186 (330)
...-....++.++|.++-++.+.+.+.. ...++-+|.|+||+|||.++..+|... .+..
T Consensus 161 t~~Ar~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~ 228 (786)
T COG0542 161 TELAREGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKR 228 (786)
T ss_pred HHHHhcCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCE
Confidence 3444567889999999888888877632 223567899999999999999999876 3456
Q ss_pred EEEecccchh--ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh---------HHHHHHHHhcCCCCCCcEEEEec
Q psy3808 187 FFSVSSSDLV--SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI---------SNALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 187 ~~~~~~~~~~--~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~---------~~~l~~~l~~~~~~~~~v~vi~t 255 (330)
++.++...+. .+|.|+.+..++.+.+.....++.|+|||| ++..+ .++ ..++...... ..+-+||+
T Consensus 229 i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDE-iHtiVGAG~~~G~a~DA-aNiLKPaLAR-GeL~~IGA 305 (786)
T COG0542 229 IYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDE-IHTIVGAGATEGGAMDA-ANLLKPALAR-GELRCIGA 305 (786)
T ss_pred EEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEec-hhhhcCCCcccccccch-hhhhHHHHhc-CCeEEEEe
Confidence 7888888775 478999999999999999988899999999 44211 111 1122211111 44778888
Q ss_pred CCCC-----CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhc----CCCCCCChHhHHHHHHHcCCCCH
Q psy3808 256 TNIP-----WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLG----NTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 256 tn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
|+.. -.-|++|-|||+. |.+..|+.++-..|++-.-. .+++.+++..+...+..+..|..
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~ 374 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIP 374 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcc
Confidence 8543 2468999999954 89999999999999875433 34566788888888887776643
No 175
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=99.37 E-value=6.4e-12 Score=85.26 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3808 5 DKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYL 72 (330)
Q Consensus 5 ~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l 72 (330)
+.|+.++++||++|+.|+|++|+.+|+++++.|.+.++.. .+...+..+++++.+|++|++.|++.+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~-pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNY-PDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3899999999999999999999999999999999999887 456668889999999999999999986
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.35 E-value=9.3e-12 Score=97.50 Aligned_cols=120 Identities=30% Similarity=0.433 Sum_probs=79.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCC--cEEEecccchhccc--------------cChhHHHHHHHHHHHHhcCCeEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNS--TFFSVSSSDLVSKW--------------LGESEKLVKTLFELARAHRPSII 222 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~~~~f~~a~~~~~~ii 222 (330)
..++|+||||||||++++.++..+... .++.+++......+ ..........++..+....+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999443 47878877643321 12234566678888887778999
Q ss_pred EEeCCcchhhHHHHHHHHh--------cCCCCCCcEEEEecCCC-CCCcCHHHHhccccEEEecCC
Q psy3808 223 FIDERIDRGISNALFLLLS--------GVGNDMDGILVLGATNI-PWVLDAAIRRRFEKRIYIALP 279 (330)
Q Consensus 223 ~iDe~~~~~~~~~l~~~l~--------~~~~~~~~v~vi~ttn~-~~~l~~~l~~Rf~~~i~~~~p 279 (330)
++|| ++............ .......+..+|+++|. ....+..+..|++..+.++.+
T Consensus 83 iiDe-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDE-ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEC-CcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999 65443332222111 11112245677778875 344455566588887777654
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.34 E-value=2.7e-11 Score=110.55 Aligned_cols=139 Identities=24% Similarity=0.378 Sum_probs=86.3
Q ss_pred cccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----c--EEEeccc----
Q psy3808 124 WTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS----T--FFSVSSS---- 193 (330)
Q Consensus 124 ~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~----~--~~~~~~~---- 193 (330)
++++.+.++..+.+...+. ..++++|+||||||||++|+.+|..+.+. . ++.++.+
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 6677777878777776652 13589999999999999999999988332 1 2223221
Q ss_pred chhcccc-Chh-----HHHHHHHHHHHHh--cCCeEEEEeCCcchhhHH----HHHHHHhcC------------------
Q psy3808 194 DLVSKWL-GES-----EKLVKTLFELARA--HRPSIIFIDERIDRGISN----ALFLLLSGV------------------ 243 (330)
Q Consensus 194 ~~~~~~~-~~~-----~~~~~~~f~~a~~--~~~~ii~iDe~~~~~~~~----~l~~~l~~~------------------ 243 (330)
+++..+. +.. ......+...|.. ..|++|+||| +++.... .+..+++.-
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDE-INRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e 318 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDE-INRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEE 318 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEeh-hhccCHHHhhhhhhhhccccccccccceeeeccccccc
Confidence 2222221 100 1122233344544 3578999999 7765543 333333310
Q ss_pred -CCCCCcEEEEecCCCCC----CcCHHHHhccccEEEecC
Q psy3808 244 -GNDMDGILVLGATNIPW----VLDAAIRRRFEKRIYIAL 278 (330)
Q Consensus 244 -~~~~~~v~vi~ttn~~~----~l~~~l~~Rf~~~i~~~~ 278 (330)
..-..++.||||+|..+ .+|.|++|||. .+.+.+
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred cccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 01124689999999887 79999999994 466654
No 178
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.33 E-value=1.2e-11 Score=99.58 Aligned_cols=135 Identities=24% Similarity=0.268 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----------------------c
Q psy3808 129 GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS----------------------T 186 (330)
Q Consensus 129 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~----------------------~ 186 (330)
|++.+++.|...+. .. ..++.+||+||+|+||+++|.+++..+-+. .
T Consensus 1 gq~~~~~~L~~~~~----------~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK----------SG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH----------CT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH----------cC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 77888888888773 22 233679999999999999999999987221 1
Q ss_pred EEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 187 FFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
++.+....... .. .-..++.+..... ....-|++||+ .+.....+...++..++++..++.+|.+|+.+..+
T Consensus 70 ~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~-ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 70 FIIIKPDKKKK-SI--KIDQIREIIEFLSLSPSEGKYKVIIIDE-ADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp EEEEETTTSSS-SB--SHHHHHHHHHHCTSS-TTSSSEEEEEET-GGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred eEEEecccccc-hh--hHHHHHHHHHHHHHHHhcCCceEEEeeh-HhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 22222211100 01 1234444444332 23456999999 88877777777777777777889999999999999
Q ss_pred CHHHHhccccEEEecCC
Q psy3808 263 DAAIRRRFEKRIYIALP 279 (330)
Q Consensus 263 ~~~l~~Rf~~~i~~~~p 279 (330)
.|.++||+ ..+.|++.
T Consensus 146 l~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 146 LPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp -HHHHTTS-EEEEE---
T ss_pred hHHHHhhc-eEEecCCC
Confidence 99999999 55777664
No 179
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=2.9e-11 Score=108.04 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=92.2
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCCC------------------------cEEEecccchhcc--------------
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANNS------------------------TFFSVSSSDLVSK-------------- 198 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~~------------------------~~~~~~~~~~~~~-------------- 198 (330)
.++++||+||+|+||+++|+++|+.+.+. .++.+.+......
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 34789999999999999999999987221 0111221100000
Q ss_pred ccC---------hhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHH
Q psy3808 199 WLG---------ESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAA 265 (330)
Q Consensus 199 ~~~---------~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 265 (330)
-.| -.-..++.+..... ....-|++||+ .+.....+...++..++++.+++++|.+|+.++.+.|+
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpT 178 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYP-AEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEec-hhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHH
Confidence 000 01123444443332 23445999999 88877777777777777888899999999999999999
Q ss_pred HHhccccEEEecCCCHHHHHHHHHH
Q psy3808 266 IRRRFEKRIYIALPELNARLFMFRH 290 (330)
Q Consensus 266 l~~Rf~~~i~~~~p~~~~r~~il~~ 290 (330)
++||+ ..+.|++|+.++....+..
T Consensus 179 I~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 179 ILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HHhcC-EEEEecCCCHHHHHHHHHH
Confidence 99999 6799999999888877765
No 180
>KOG0990|consensus
Probab=99.33 E-value=7.6e-12 Score=107.20 Aligned_cols=190 Identities=18% Similarity=0.165 Sum_probs=133.5
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC-cE----E
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS-TF----F 188 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~-~~----~ 188 (330)
.++.++++-.+.++++.+++...+.++. ...+.| +.|+|||||+|||+...+.|..+.+. +. .
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~----------~~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~l 97 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYS----------GMPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLL 97 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhc----------cCCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHH
Confidence 4567788999999999999999998874 223344 99999999999999999999998442 11 1
Q ss_pred EecccchhccccChhHHHHHHHHHHHHh-------cCCeEEEEeCCcchhhH---HHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 189 SVSSSDLVSKWLGESEKLVKTLFELARA-------HRPSIIFIDERIDRGIS---NALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~f~~a~~-------~~~~ii~iDe~~~~~~~---~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
.++.++-.+ .+ ....-...|...+. ..+..|++|| .|.... +++.+.... ...++.|+.-+|.
T Consensus 98 elnaSd~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDE-ADaMT~~AQnALRRviek---~t~n~rF~ii~n~ 170 (360)
T KOG0990|consen 98 ELNASDDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDE-ADAMTRDAQNALRRVIEK---YTANTRFATISNP 170 (360)
T ss_pred HhhccCccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecc-hhHhhHHHHHHHHHHHHH---hccceEEEEeccC
Confidence 122222111 11 12223345555543 2567899999 765544 455554443 3455666677899
Q ss_pred CCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 259 PWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 259 ~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
+..+.|++.+||.+ +.|.+.+.......+.+.++........+....+++.+-|.....++.|-
T Consensus 171 ~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lq 234 (360)
T KOG0990|consen 171 PQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQ 234 (360)
T ss_pred hhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999954 78888888888888888888887777788888888888877666555443
No 181
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.33 E-value=2.7e-11 Score=108.21 Aligned_cols=157 Identities=23% Similarity=0.278 Sum_probs=98.2
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC------CcEE--------
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN------STFF-------- 188 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~------~~~~-------- 188 (330)
.|..|+|+++++..|.-.+..|. ..+++|.|+||+|||++++++++.++. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 47889999999999876664321 257999999999999999999987621 1111
Q ss_pred -Eecccc-------------------hhc-----cccChh--HHHHH---HHHH--HHHhcCCeEEEEeC--CcchhhHH
Q psy3808 189 -SVSSSD-------------------LVS-----KWLGES--EKLVK---TLFE--LARAHRPSIIFIDE--RIDRGISN 234 (330)
Q Consensus 189 -~~~~~~-------------------~~~-----~~~~~~--~~~~~---~~f~--~a~~~~~~ii~iDe--~~~~~~~~ 234 (330)
+.+|.. +.. ...|.. ...+. ..|. .......+++|+|| .++...+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~ 149 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVD 149 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHH
Confidence 001110 000 111111 00000 0000 00112347999999 44456666
Q ss_pred HHHHHHhcCC----------CCCCcEEEEecCCCCC-CcCHHHHhccccEEEecCCCH-HHHHHHHHHH
Q psy3808 235 ALFLLLSGVG----------NDMDGILVLGATNIPW-VLDAAIRRRFEKRIYIALPEL-NARLFMFRHH 291 (330)
Q Consensus 235 ~l~~~l~~~~----------~~~~~v~vi~ttn~~~-~l~~~l~~Rf~~~i~~~~p~~-~~r~~il~~~ 291 (330)
.++..++.-. ....++++|+|+|+.+ .+.++++.||...+.++.|+. +++.+|++..
T Consensus 150 ~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 150 VLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred HHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 6777665321 0124578898888665 689999999999999999875 8888888764
No 182
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.32 E-value=2.6e-11 Score=109.30 Aligned_cols=151 Identities=26% Similarity=0.339 Sum_probs=98.0
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc--cccChhH
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS--KWLGESE 204 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~--~~~~~~~ 204 (330)
++|.++++..+...+.. .+++||.||||||||++|+.+|..+ +.+|+.+.+..... ...|...
T Consensus 26 ~~g~~~~~~~~l~a~~~--------------~~~vll~G~PG~gKT~la~~lA~~l-~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLA--------------GGHVLLEGPPGVGKTLLARALARAL-GLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHc--------------CCCEEEECCCCccHHHHHHHHHHHh-CCCeEEEecCCCCCHHHhcCchh
Confidence 77888877777665522 3589999999999999999999999 78999888864322 1111111
Q ss_pred HHH----HHHHHHHHh--cCC--eEEEEeC--CcchhhHHHHHHHHhcCC----C-----CCCcEEEEecCCC-----CC
Q psy3808 205 KLV----KTLFELARA--HRP--SIIFIDE--RIDRGISNALFLLLSGVG----N-----DMDGILVLGATNI-----PW 260 (330)
Q Consensus 205 ~~~----~~~f~~a~~--~~~--~ii~iDe--~~~~~~~~~l~~~l~~~~----~-----~~~~v~vi~ttn~-----~~ 260 (330)
-.. ...|..... ... +|+++|| +.+....+.++..++... . -...+++|+|+|+ ..
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~ 170 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTY 170 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCc
Confidence 000 000100000 001 4999999 344566777777777511 1 1246788888884 34
Q ss_pred CcCHHHHhccccEEEecCC-CHHHHHHHHHHHh
Q psy3808 261 VLDAAIRRRFEKRIYIALP-ELNARLFMFRHHL 292 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p-~~~~r~~il~~~l 292 (330)
.++.++++||...++++.| +..+...++....
T Consensus 171 ~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 171 PLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred CCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 6789999999888999999 5555555555443
No 183
>KOG1942|consensus
Probab=99.31 E-value=1.1e-10 Score=98.94 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=68.5
Q ss_pred CCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCC-------------CCCcCHHHHhccccEEEecCCCHHHH
Q psy3808 218 RPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNI-------------PWVLDAAIRRRFEKRIYIALPELNAR 284 (330)
Q Consensus 218 ~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~-------------~~~l~~~l~~Rf~~~i~~~~p~~~~r 284 (330)
-|+|+|||| .+-.-...|-.+-..++.+...+++ .+||+ |+.+++.++.|+ .+|..-+++.++.
T Consensus 296 vPGVLFIDE-VhMLDiEcFTyL~kalES~iaPivi-fAsNrG~~~irGt~d~~sPhGip~dllDRl-~Iirt~~y~~~e~ 372 (456)
T KOG1942|consen 296 VPGVLFIDE-VHMLDIECFTYLHKALESPIAPIVI-FASNRGMCTIRGTEDILSPHGIPPDLLDRL-LIIRTLPYDEEEI 372 (456)
T ss_pred cCcceEeee-hhhhhhHHHHHHHHHhcCCCCceEE-EecCCcceeecCCcCCCCCCCCCHHHhhhe-eEEeeccCCHHHH
Confidence 477888888 6655555555555555555455444 45553 567889999998 6788888899999
Q ss_pred HHHHHHHhcCCCCCCChHhHHHHHHHcC
Q psy3808 285 LFMFRHHLGNTRNTISDENLKELAKRTE 312 (330)
Q Consensus 285 ~~il~~~l~~~~~~~~~~~~~~la~~~~ 312 (330)
++|++......+..+++..+..|+....
T Consensus 373 r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 373 RQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred HHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 9999999888888889988888887543
No 184
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.31 E-value=1.9e-11 Score=83.16 Aligned_cols=67 Identities=30% Similarity=0.459 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHH----HHHHHHHHHHHHhhh
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCD----EYLARAEKLKEYLKK 74 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~----e~~~r~e~Lk~~l~~ 74 (330)
.+++||+++++|+..|.+|+|++|+.+|.+++++|.. + .++..++.++.++. +|++|+|.|+.++.+
T Consensus 2 ~l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~----e-kn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l~~ 72 (75)
T cd02680 2 DLERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN----T-SNETMDQALQTKLKQLARQALDRAEALKESMSK 72 (75)
T ss_pred CHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH----h-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4679999999999999999999999999999999988 2 45666888888885 999999999999863
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=4.9e-11 Score=114.28 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=118.9
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEE-ecc
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFS-VSS 192 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~-~~~ 192 (330)
.+..++.+.++++++|++..++.+..++.... ....+.+.++|+||||||||++++.+|+.+ +..++. .++
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~-------~~~~~~~illL~GP~GsGKTTl~~~la~~l-~~~~~Ew~np 144 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQV-------LENAPKRILLITGPSGCGKSTTIKILSKEL-GIQVQEWSNP 144 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc-------cccCCCcEEEEECCCCCCHHHHHHHHHHHh-hhHHHHHhhh
Confidence 46678899999999999999999988774321 112233459999999999999999999988 443322 111
Q ss_pred c---ch-------------hccccChhHHHHHHHHHHHH----------hcCCeEEEEeCCcchhh---HHHHHHHHh-c
Q psy3808 193 S---DL-------------VSKWLGESEKLVKTLFELAR----------AHRPSIIFIDERIDRGI---SNALFLLLS-G 242 (330)
Q Consensus 193 ~---~~-------------~~~~~~~~~~~~~~~f~~a~----------~~~~~ii~iDe~~~~~~---~~~l~~~l~-~ 242 (330)
. .. +..+.. .......+...+. .....||+||| ++... ...+..++. .
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s-~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDE-iPn~~~r~~~~lq~lLr~~ 222 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQS-QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVED-LPNQFYRDTRALHEILRWK 222 (637)
T ss_pred hhhcccccccccchhhhhccccccc-hHHHHHHHHHHHHhhhcccccccCCceeEEEeec-chhhchhhHHHHHHHHHHH
Confidence 1 00 011111 1122333333332 12456999999 64221 123333333 1
Q ss_pred CCCCCCcE-EEEecCCCCC----------C----cCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCC-------C
Q psy3808 243 VGNDMDGI-LVLGATNIPW----------V----LDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRN-------T 298 (330)
Q Consensus 243 ~~~~~~~v-~vi~ttn~~~----------~----l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~-------~ 298 (330)
.... ..+ +|+.+|..+. . +.+++++ |. .+|.|.+.........++..+..... .
T Consensus 223 ~~e~-~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 223 YVSI-GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred hhcC-CCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 2111 222 2332332221 1 3478886 55 46999999999988888777765421 1
Q ss_pred CChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 299 ISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 299 ~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
.++..+..|+..+.|.....|..|-
T Consensus 301 p~~~~l~~I~~~s~GDiRsAIn~LQ 325 (637)
T TIGR00602 301 PKKTSVELLCQGCSGDIRSAINSLQ 325 (637)
T ss_pred CCHHHHHHHHHhCCChHHHHHHHHH
Confidence 2456888999989988887777664
No 186
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=5.6e-13 Score=104.85 Aligned_cols=108 Identities=25% Similarity=0.370 Sum_probs=66.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch------hccccChh--HHHHHHHHHHHHhcCCeEEEEeCCcch-
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL------VSKWLGES--EKLVKTLFELARAHRPSIIFIDERIDR- 230 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~f~~a~~~~~~ii~iDe~~~~- 230 (330)
+|+|+||||||||++|+.+|..+ +.+++.++++.. .+.|.-.. .......+..+. ..+++++||| ++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDE-in~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDE-INRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESS-CGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-hcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECC-cccC
Confidence 48999999999999999999999 788877776542 22221100 000000000000 1568999999 664
Q ss_pred --hhHHHHHHHHhcCCC----------CCC------cEEEEecCCCCC----CcCHHHHhcc
Q psy3808 231 --GISNALFLLLSGVGN----------DMD------GILVLGATNIPW----VLDAAIRRRF 270 (330)
Q Consensus 231 --~~~~~l~~~l~~~~~----------~~~------~v~vi~ttn~~~----~l~~~l~~Rf 270 (330)
.+...+..+++.-.. ... ++.+|+|+|+.. .+++++++||
T Consensus 78 ~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 444455555553211 011 389999999988 8999999998
No 187
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=1.9e-10 Score=101.88 Aligned_cols=148 Identities=15% Similarity=0.071 Sum_probs=100.1
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCCC----------------------cEEEecccchhccccChhHHHHHHHHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANNS----------------------TFFSVSSSDLVSKWLGESEKLVKTLFELA 214 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a 214 (330)
.++.+||+||.|+||+++|+++|..+-+. .++.+.+.. .++.. .-..++.+...+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 34789999999999999999999987211 122222211 00101 122344443333
Q ss_pred H----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHH
Q psy3808 215 R----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRH 290 (330)
Q Consensus 215 ~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~ 290 (330)
. ....-|++||+ .+.....+...++..++++..++++|..|+.+..+.|.++||+ ..+.|++|+.++....+..
T Consensus 101 ~~~~~~~~~kV~iI~~-ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 101 QESSQLNGYRLFVIEP-ADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred hhCcccCCceEEEecc-hhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 2 23456999999 8888877777888888888889999999999999999999999 5689999998887776653
Q ss_pred HhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 291 HLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 291 ~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
.+. + ....+++.+.|-.+.
T Consensus 179 ----~~~--~--~~~~~l~l~~G~p~~ 197 (319)
T PRK06090 179 ----QGI--T--VPAYALKLNMGSPLK 197 (319)
T ss_pred ----cCC--c--hHHHHHHHcCCCHHH
Confidence 222 2 123455666664443
No 188
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.28 E-value=1.8e-11 Score=109.75 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=104.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcccc-----ChhH-------HHHHHHHHHHHhcCCeEEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWL-----GESE-------KLVKTLFELARAHRPSIIFI 224 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~f~~a~~~~~~ii~i 224 (330)
.+|||+|++||||+++|++|.... .+.||+.++|..+..... |... ......|.. ...++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~---a~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFER---ADGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhh---CCCCEEEe
Confidence 469999999999999999998766 346999999987633211 1000 000011222 23579999
Q ss_pred eC--CcchhhHHHHHHHHhcCCC--------CCCcEEEEecCCCC-------CCcCHHHHhcccc-EEEecCCC--HHHH
Q psy3808 225 DE--RIDRGISNALFLLLSGVGN--------DMDGILVLGATNIP-------WVLDAAIRRRFEK-RIYIALPE--LNAR 284 (330)
Q Consensus 225 De--~~~~~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~-~i~~~~p~--~~~r 284 (330)
|| .++...+..++..++.... ...++.+|++|+.. ..+.+.|..|+.. .|.+|+.. .++.
T Consensus 100 dei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI 179 (329)
T TIGR02974 100 DELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDI 179 (329)
T ss_pred CChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhH
Confidence 99 3345566667776654221 11347888888754 2355777788843 34444433 2334
Q ss_pred HHHHHHHhcC----C--C--CCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 285 LFMFRHHLGN----T--R--NTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 285 ~~il~~~l~~----~--~--~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
..+++.++.. . . ..+++..+..|.....--+.++|.+++++|++
T Consensus 180 ~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 180 MLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVY 231 (329)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 4455554432 1 2 34688888888888766677899999888764
No 189
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=99.28 E-value=5.5e-11 Score=82.68 Aligned_cols=71 Identities=42% Similarity=0.651 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKK 74 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~ 74 (330)
.+++|+.++++|++.|+.|+|++|+.+|.++++.|...++.+ .++..+..++.++.+|++|++.|+..+..
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~-~~~~~k~~l~~k~~~yl~RaE~Lk~~l~~ 72 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAE-KEPKLRKLLRKKVKEYLDRAEFLKELLKK 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467999999999999999999999999999999999999777 56888899999999999999999998754
No 190
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.27 E-value=7.1e-11 Score=113.33 Aligned_cols=192 Identities=18% Similarity=0.167 Sum_probs=124.3
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVS 197 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~ 197 (330)
+..++++++|.....+.+.+.+.... .....|||+|++||||+++|++|+... .+.+|+.++|..+..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 44688999998888888777664322 122479999999999999999999876 356999999987633
Q ss_pred cccChhHHHHHHHHHH---------------HHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC-C-------CCcEE
Q psy3808 198 KWLGESEKLVKTLFEL---------------ARAHRPSIIFIDERID---RGISNALFLLLSGVGN-D-------MDGIL 251 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~---------------a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~-~-------~~~v~ 251 (330)
.+. -..+|.. ......++||||| ++ ...+..++..++...- . ...+.
T Consensus 261 ~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~lde-i~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~r 333 (534)
T TIGR01817 261 TLL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDE-IGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR 333 (534)
T ss_pred HHH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEec-hhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEE
Confidence 211 1111110 0112357999999 55 4556666666654211 0 01367
Q ss_pred EEecCCCC-------CCcCHHHHhcccc-EEEecCCC--HHHHHHHHHHHhcCC------CCCCChHhHHHHHHHcCCCC
Q psy3808 252 VLGATNIP-------WVLDAAIRRRFEK-RIYIALPE--LNARLFMFRHHLGNT------RNTISDENLKELAKRTEGYS 315 (330)
Q Consensus 252 vi~ttn~~-------~~l~~~l~~Rf~~-~i~~~~p~--~~~r~~il~~~l~~~------~~~~~~~~~~~la~~~~g~~ 315 (330)
+|++|+.. ..+.+.|..|+.. .|.+|+.. .++...+++.++... ...+++..+..|......-+
T Consensus 334 iI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGN 413 (534)
T TIGR01817 334 LVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGN 413 (534)
T ss_pred EEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCCh
Confidence 88888654 2355677777743 35555543 234445555555421 24578888999988876667
Q ss_pred HHHHHHHHhhccc
Q psy3808 316 GADISTLERNFKV 328 (330)
Q Consensus 316 ~~di~~l~~~a~~ 328 (330)
.++|.++++.|++
T Consensus 414 vrEL~~v~~~a~~ 426 (534)
T TIGR01817 414 VRELENCLERTAT 426 (534)
T ss_pred HHHHHHHHHHHHH
Confidence 7899999988864
No 191
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2e-10 Score=103.98 Aligned_cols=192 Identities=21% Similarity=0.344 Sum_probs=122.6
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----CCcEEEecccchhccc-
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----NSTFFSVSSSDLVSKW- 199 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----~~~~~~~~~~~~~~~~- 199 (330)
+.+.+.++..+.+...+.-.+. +..| .+++++||||||||.+++.++.++. +..+++++|....+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~-------~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR-------GERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc-------CCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3488999999999887644332 2233 4699999999999999999999982 1127888886543321
Q ss_pred --------------cChh-HHHHHHHHHHHHh-cCCeEEEEeCCcchhhHH---HHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 200 --------------LGES-EKLVKTLFELARA-HRPSIIFIDERIDRGISN---ALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 200 --------------~~~~-~~~~~~~f~~a~~-~~~~ii~iDe~~~~~~~~---~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
.|.+ ......+++.... ....||++|| +|..... .+..++........++.+|+.+|..+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDE-id~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDE-VDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcc-hhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 1111 2223333333333 4566888999 6654443 55555554444445688898888764
Q ss_pred ---CcCHHHHhcccc-EEEecCCCHHHHHHHHHHHhcCC--CCCCChHhHHHHH---HHcCCCCHHHHHHHHhhc
Q psy3808 261 ---VLDAAIRRRFEK-RIYIALPELNARLFMFRHHLGNT--RNTISDENLKELA---KRTEGYSGADISTLERNF 326 (330)
Q Consensus 261 ---~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~~--~~~~~~~~~~~la---~~~~g~~~~di~~l~~~a 326 (330)
.+++.+.++|.. .|.||+++..+...|++...+.. ...+++..+..+| ....|.....| .+|+.|
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~ai-dilr~A 241 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAI-DILRRA 241 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHH-HHHHHH
Confidence 678899997754 48999999999999998876642 2234555555544 34444433333 334433
No 192
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.27 E-value=2.1e-11 Score=118.60 Aligned_cols=157 Identities=23% Similarity=0.311 Sum_probs=100.0
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC-------------------
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN------------------- 183 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~------------------- 183 (330)
-|.+|+|++.++..+.-.++.+. ..+|||.|+||||||++|++++..++
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~------------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPR------------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCC------------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 47899999999988876664321 14799999999999999999998873
Q ss_pred ---------------CCcEEEecccchhccccChh--HHHHH---HHHH--HHHhcCCeEEEEeC--CcchhhHHHHHHH
Q psy3808 184 ---------------NSTFFSVSSSDLVSKWLGES--EKLVK---TLFE--LARAHRPSIIFIDE--RIDRGISNALFLL 239 (330)
Q Consensus 184 ---------------~~~~~~~~~~~~~~~~~~~~--~~~~~---~~f~--~a~~~~~~ii~iDe--~~~~~~~~~l~~~ 239 (330)
..+|+.+.++......+|.. ...+. ..+. .......+|||||| .++...++.|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~ 149 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDA 149 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHH
Confidence 23555544433222222321 00000 0000 00011236999999 3445566667776
Q ss_pred HhcCC----------CCCCcEEEEecCCCC-CCcCHHHHhccccEEEecCCC-HHHHHHHHHHH
Q psy3808 240 LSGVG----------NDMDGILVLGATNIP-WVLDAAIRRRFEKRIYIALPE-LNARLFMFRHH 291 (330)
Q Consensus 240 l~~~~----------~~~~~v~vi~ttn~~-~~l~~~l~~Rf~~~i~~~~p~-~~~r~~il~~~ 291 (330)
++.-. ....++.+|+|+|+. ..+.++|+.||+..+.++.+. .+++.++++..
T Consensus 150 le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 150 AAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred HhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 65321 012358899998864 368899999999888888764 56777777653
No 193
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.26 E-value=5.3e-10 Score=97.99 Aligned_cols=166 Identities=18% Similarity=0.254 Sum_probs=99.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE---ecc----cch----hccc----cChh-HHHHHHH----HHHHHhcCC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS---VSS----SDL----VSKW----LGES-EKLVKTL----FELARAHRP 219 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~---~~~----~~~----~~~~----~~~~-~~~~~~~----f~~a~~~~~ 219 (330)
.++|+||+|+|||++++.++..+....+.. +++ .++ ...+ .+.. ......+ ........+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999873222221 111 111 1100 0111 1111222 222334567
Q ss_pred eEEEEeCCcchhhHH---HHHHHHhcCCCC-CCcEEEEecCCCC--CCc----CHHHHhccccEEEecCCCHHHHHHHHH
Q psy3808 220 SIIFIDERIDRGISN---ALFLLLSGVGND-MDGILVLGATNIP--WVL----DAAIRRRFEKRIYIALPELNARLFMFR 289 (330)
Q Consensus 220 ~ii~iDe~~~~~~~~---~l~~~l~~~~~~-~~~v~vi~ttn~~--~~l----~~~l~~Rf~~~i~~~~p~~~~r~~il~ 289 (330)
.+|+||| .+..... .+.. +...... ...+.|+.+.... ..+ ...+.+|+...+.+++.+.++...++.
T Consensus 125 ~vliiDe-~~~l~~~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~ 202 (269)
T TIGR03015 125 ALLVVDE-AQNLTPELLEELRM-LSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIE 202 (269)
T ss_pred eEEEEEC-cccCCHHHHHHHHH-HhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHH
Confidence 8999999 6554332 2222 2222221 1223333333221 111 234667887889999999999999998
Q ss_pred HHhcCCC----CCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 290 HHLGNTR----NTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 290 ~~l~~~~----~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
..+...+ ..+++..+..|++.+.|+... |+.+|..+..
T Consensus 203 ~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~ 244 (269)
T TIGR03015 203 HRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLL 244 (269)
T ss_pred HHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHH
Confidence 8876543 357888999999999999765 9999988754
No 194
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.25 E-value=1.5e-10 Score=106.56 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=87.4
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccc-hhccccChh
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSD-LVSKWLGES 203 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~-~~~~~~~~~ 203 (330)
.|+|.+++++.+...+. ...++||.||||||||++|++++..+.. .+|..+.+.. ......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 48899999998887662 2358999999999999999999998732 1343332221 111112211
Q ss_pred -HHHH--HHHHHHHHhc---CCeEEEEeC--CcchhhHHHHHHHHhcCCC-------CCCcEEEEecCCCCC---CcCHH
Q psy3808 204 -EKLV--KTLFELARAH---RPSIIFIDE--RIDRGISNALFLLLSGVGN-------DMDGILVLGATNIPW---VLDAA 265 (330)
Q Consensus 204 -~~~~--~~~f~~a~~~---~~~ii~iDe--~~~~~~~~~l~~~l~~~~~-------~~~~v~vi~ttn~~~---~l~~~ 265 (330)
-... ..-|...... ...++|+|| +......+.|+..+..-.- ..+.-++++|||... ...++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leA 166 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEA 166 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHH
Confidence 0000 1112111111 234899999 3334555666666632210 111124444556432 23458
Q ss_pred HHhccccEEEecCCC-HHHHHHHHHHH
Q psy3808 266 IRRRFEKRIYIALPE-LNARLFMFRHH 291 (330)
Q Consensus 266 l~~Rf~~~i~~~~p~-~~~r~~il~~~ 291 (330)
+..||-..+.+|+|+ .++...|+...
T Consensus 167 L~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 167 LYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred hHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 999997789999997 45557777653
No 195
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=5e-11 Score=109.36 Aligned_cols=197 Identities=20% Similarity=0.252 Sum_probs=127.2
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccch
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDL 195 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~ 195 (330)
.....+|++|+|.......+.+.+...- ....+|||.|.+||||..+|++|.+.. .+.||+.+||..+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIA----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhc----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4567899999998888777777663321 223579999999999999999999887 3459999999766
Q ss_pred hcc-------------ccChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC--------CCCcEEE
Q psy3808 196 VSK-------------WLGESEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN--------DMDGILV 252 (330)
Q Consensus 196 ~~~-------------~~~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~--------~~~~v~v 252 (330)
... |.|.....-..+|+.|.. +.||+|| .+...++..|++.++.-.- ..-.|.|
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRI 384 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRI 384 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEE
Confidence 322 111111112234554433 6899999 3455677778888775321 1124899
Q ss_pred EecCCCCC-------CcCHHHHhccccEEEecCCCHHHHH----HHHHHHhc----CCCC---CCChHhHHHHHHHcCCC
Q psy3808 253 LGATNIPW-------VLDAAIRRRFEKRIYIALPELNARL----FMFRHHLG----NTRN---TISDENLKELAKRTEGY 314 (330)
Q Consensus 253 i~ttn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~----~~~~---~~~~~~~~~la~~~~g~ 314 (330)
|+|||..- .+-..|.-|. .++.+..|...+|. .+...++. +.+. .+++..+..|.+.-.--
T Consensus 385 IAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPG 463 (560)
T COG3829 385 IAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPG 463 (560)
T ss_pred EeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCc
Confidence 99999741 2223333466 34566666654443 33333333 3322 35677788877766555
Q ss_pred CHHHHHHHHhhccc
Q psy3808 315 SGADISTLERNFKV 328 (330)
Q Consensus 315 ~~~di~~l~~~a~~ 328 (330)
+-++|++++.++.+
T Consensus 464 NVRELeNviER~v~ 477 (560)
T COG3829 464 NVRELENVIERAVN 477 (560)
T ss_pred hHHHHHHHHHHHHh
Confidence 66899999988874
No 196
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.24 E-value=3.9e-10 Score=100.35 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=47.6
Q ss_pred Ccc-cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC------cEEEecc
Q psy3808 123 KWT-DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS------TFFSVSS 192 (330)
Q Consensus 123 ~~~-~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~------~~~~~~~ 192 (330)
-|+ ++.|+++++..+.+++.... .+.....+.++|+||||||||++|++|++.++.. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 355 89999999999988875432 1222233568999999999999999999998322 6666644
No 197
>KOG0741|consensus
Probab=99.23 E-value=6.6e-11 Score=107.57 Aligned_cols=133 Identities=31% Similarity=0.441 Sum_probs=94.9
Q ss_pred CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEe-cccchhccccChhH--HHHHHHHHHHHhcCCeEEEEeC-----
Q psy3808 155 RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV-SSSDLVSKWLGESE--KLVKTLFELARAHRPSIIFIDE----- 226 (330)
Q Consensus 155 ~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~f~~a~~~~~~ii~iDe----- 226 (330)
..+..++||+||||+|||+||..+|... +-||+.+ ++.++.+ ..+++ ..+..+|+.|...+-+||++|+
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S-~FPFvKiiSpe~miG--~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSS-DFPFVKIISPEDMIG--LSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLL 611 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhc-CCCeEEEeChHHccC--ccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhh
Confidence 3455789999999999999999999988 7899875 4444433 22333 3578999999999999999999
Q ss_pred -------CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCH-HHHhccccEEEecCCCH-HHHHHHHHH
Q psy3808 227 -------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDA-AIRRRFEKRIYIALPEL-NARLFMFRH 290 (330)
Q Consensus 227 -------~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~-~l~~Rf~~~i~~~~p~~-~~r~~il~~ 290 (330)
+....+..+|+.++........+.+|++||+.-.-+.. .+...|+..+.+|..+. ++..++++.
T Consensus 612 D~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 612 DYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 22334445566666665544456888888876544432 56668999999988765 556666653
No 198
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.23 E-value=3.6e-10 Score=101.44 Aligned_cols=191 Identities=18% Similarity=0.174 Sum_probs=118.4
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchhcc--
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLVSK-- 198 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~-- 198 (330)
.+++++|.....+.+.+.+.... ....+|+|+|++||||+++|++|..... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 35678998777777766663321 1124699999999999999999997663 468999999876321
Q ss_pred ---ccChhH-------HHHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC-C-------CCcEEEEecCC
Q psy3808 199 ---WLGESE-------KLVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVGN-D-------MDGILVLGATN 257 (330)
Q Consensus 199 ---~~~~~~-------~~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~-~-------~~~v~vi~ttn 257 (330)
+.|... ......+. ....+.||||| ++ ...+..+...++.... . ...+.+|++|+
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~-i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDE-LATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATN 149 (326)
T ss_pred HHHHccccccccCCcccccCCchh---ccCCCeEEeCC-hhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCc
Confidence 111100 00011122 23357899999 55 4556666666654221 0 12477888876
Q ss_pred CC-------CCcCHHHHhccccEEEecCCCHHHH----HHHHHHHh----cCCC----CCCChHhHHHHHHHcCCCCHHH
Q psy3808 258 IP-------WVLDAAIRRRFEKRIYIALPELNAR----LFMFRHHL----GNTR----NTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 258 ~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r----~~il~~~l----~~~~----~~~~~~~~~~la~~~~g~~~~d 318 (330)
.. ..+.+.|..||.. +.+..|...+| ..++.+++ ...+ ..+++..+..|....---+-++
T Consensus 150 ~~l~~l~~~g~f~~dL~~~l~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrE 228 (326)
T PRK11608 150 ADLPAMVAEGKFRADLLDRLAF-DVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRE 228 (326)
T ss_pred hhHHHHHHcCCchHHHHHhcCC-CEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHH
Confidence 54 3456778888843 34444444443 34455543 2222 2467788888888776667789
Q ss_pred HHHHHhhccc
Q psy3808 319 ISTLERNFKV 328 (330)
Q Consensus 319 i~~l~~~a~~ 328 (330)
|++++++|+.
T Consensus 229 L~~vl~~a~~ 238 (326)
T PRK11608 229 LKNVVERSVY 238 (326)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 199
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.3e-10 Score=100.38 Aligned_cols=65 Identities=34% Similarity=0.435 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCC--CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKR--VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
++|++++|+.+.-++...+++..+-.... ..|++||+.||+|+|||.+|+.+|+-. +.||+.+-+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~-~aPFiKVEA 83 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA-GAPFIKVEA 83 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh-CCCeEEEEe
Confidence 89999999998776655444433322222 245899999999999999999999988 899987755
No 200
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.22 E-value=3.6e-11 Score=97.44 Aligned_cols=101 Identities=30% Similarity=0.411 Sum_probs=64.4
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCC---CcEEEecccchhc----cccChhHHHHHHHHHHHHhcCCeEEEEeCCcc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANN---STFFSVSSSDLVS----KWLGESEKLVKTLFELARAHRPSIIFIDERID 229 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~ 229 (330)
|...++|.||+|||||.+|+++|..+.. .+++.++++.+.. ...- ...+...-.........|||+|| +|
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~--~~l~~~~~~~v~~~~~gVVllDE-id 78 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSV--SKLLGSPPGYVGAEEGGVVLLDE-ID 78 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHC--HHHHHHTTCHHHHHHHTEEEEET-GG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhh--hhhhhcccceeeccchhhhhhHH-Hh
Confidence 3457999999999999999999999931 3899999988865 1111 11111110011112224999999 65
Q ss_pred h--------------hhHHHHHHHHhcCC--------CCCCcEEEEecCCCCC
Q psy3808 230 R--------------GISNALFLLLSGVG--------NDMDGILVLGATNIPW 260 (330)
Q Consensus 230 ~--------------~~~~~l~~~l~~~~--------~~~~~v~vi~ttn~~~ 260 (330)
+ .+++.|+.++++.. -+..++++|+|+|-..
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 4 55567777776422 1234689999998643
No 201
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.22 E-value=6.6e-10 Score=109.71 Aligned_cols=193 Identities=19% Similarity=0.280 Sum_probs=123.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcc
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSK 198 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~ 198 (330)
+..|++++|.....+.+.+.+.... ....+|+|+|++|||||++|++|.... .+.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 3578899998888888776664321 112479999999999999999999876 3569999999875321
Q ss_pred -----ccCh--------hHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC--------CCCcEEEEec
Q psy3808 199 -----WLGE--------SEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN--------DMDGILVLGA 255 (330)
Q Consensus 199 -----~~~~--------~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~--------~~~~v~vi~t 255 (330)
..|. ..... ..+.. ...++||||| .++...+..+...++.... ...++.+|++
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~---a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~ 517 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFEL---ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 517 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHh---cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEe
Confidence 1111 11111 12222 2347999999 3345556667777654221 1135778888
Q ss_pred CCCCC-------CcCHHHHhccccEEEecCCCHHHHH----HHHHHHhcC----CC---CCCChHhHHHHHHHcCCCCHH
Q psy3808 256 TNIPW-------VLDAAIRRRFEKRIYIALPELNARL----FMFRHHLGN----TR---NTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 256 tn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~~----~~---~~~~~~~~~~la~~~~g~~~~ 317 (330)
|+.+- .+.+.+..|+. .+.+..|...+|. .+++.++.. .+ ..+++..+..|.....--+-+
T Consensus 518 t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvr 596 (686)
T PRK15429 518 TNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVR 596 (686)
T ss_pred CCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHH
Confidence 87642 23445666663 3566666666554 344544432 22 136778888888877666779
Q ss_pred HHHHHHhhccc
Q psy3808 318 DISTLERNFKV 328 (330)
Q Consensus 318 di~~l~~~a~~ 328 (330)
+|++++++|++
T Consensus 597 EL~~~i~~a~~ 607 (686)
T PRK15429 597 ELENVIERAVL 607 (686)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 202
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=99.21 E-value=1.8e-10 Score=80.65 Aligned_cols=72 Identities=35% Similarity=0.628 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3808 2 TTFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKK 74 (330)
Q Consensus 2 ~~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~ 74 (330)
+.+++|++++++|++.|..|+|++|+.+|..+++.|...++.+ .++..++.++.++.+|+.|++.|+..+..
T Consensus 3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~-~~~~~~~~~~~k~~eyl~raE~lk~~~~~ 74 (77)
T smart00745 3 DYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVE-SDSKRREAVKAKAAEYLDRAEEIKKSLLE 74 (77)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999999887 66888899999999999999999998753
No 203
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.21 E-value=1.3e-10 Score=109.83 Aligned_cols=194 Identities=22% Similarity=0.256 Sum_probs=117.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcc
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSK 198 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~ 198 (330)
...|++++|.....+.+.+.+...- ....+|||+|++||||+++|++|.... .+.||+.++|..+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 3678999999888887777663221 112479999999999999999999765 3569999999876432
Q ss_pred cc-----ChhH--------HHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCCC--------CCcEEEEec
Q psy3808 199 WL-----GESE--------KLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGND--------MDGILVLGA 255 (330)
Q Consensus 199 ~~-----~~~~--------~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~~--------~~~v~vi~t 255 (330)
.. |..+ ..-..+|+.+ ..+.||||| .++...+..|+..++.-.-. .-.+.+|++
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaa 354 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAA 354 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEec
Confidence 11 1000 0011223322 246899999 33455666777776542210 113578888
Q ss_pred CCCCC-------CcCHHHHhccccEEEecCCCHHHH----HHHHHHHhcC----CCCCCChHhHHH-------HHHHcCC
Q psy3808 256 TNIPW-------VLDAAIRRRFEKRIYIALPELNAR----LFMFRHHLGN----TRNTISDENLKE-------LAKRTEG 313 (330)
Q Consensus 256 tn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r----~~il~~~l~~----~~~~~~~~~~~~-------la~~~~g 313 (330)
|+.+- .+.+.|..|+.. +.+..|...+| ..++..++.. .+..+++..+.. |.....-
T Consensus 355 t~~~l~~~v~~g~fr~dL~~rL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WP 433 (526)
T TIGR02329 355 THCALTTAVQQGRFRRDLFYRLSI-LRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWP 433 (526)
T ss_pred cCCCHHHHhhhcchhHHHHHhcCC-cEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCC
Confidence 87652 233455556642 44455554443 3455555543 233456665555 6555555
Q ss_pred CCHHHHHHHHhhccc
Q psy3808 314 YSGADISTLERNFKV 328 (330)
Q Consensus 314 ~~~~di~~l~~~a~~ 328 (330)
-+-++|+++++++..
T Consensus 434 GNvrEL~nvier~~i 448 (526)
T TIGR02329 434 GNVRELRNLVERLAL 448 (526)
T ss_pred chHHHHHHHHHHHHH
Confidence 566889998888764
No 204
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.21 E-value=3e-10 Score=108.17 Aligned_cols=196 Identities=14% Similarity=0.173 Sum_probs=119.9
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV 196 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~ 196 (330)
.....|++++|.....+.+.+.+.... .....|+|+|++||||+++|+++.... ...||+.++|+.+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456799999998876666655552111 112469999999999999999997765 34689999998764
Q ss_pred cccc-----ChhH-------HHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCC--C------CCCcEEEEe
Q psy3808 197 SKWL-----GESE-------KLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVG--N------DMDGILVLG 254 (330)
Q Consensus 197 ~~~~-----~~~~-------~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~--~------~~~~v~vi~ 254 (330)
.... |... .....+|+. ...+.||||| .+....+..++.++..-. . ....+.||+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~ 344 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 344 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEE
Confidence 3211 1000 000112332 2347899999 334556667777775421 0 012467888
Q ss_pred cCCCCC-------CcCHHHHhccccEEEecCCCHHHHH----HHHHHHh----cCCC---CCCChHhHHHHHHHcCCCCH
Q psy3808 255 ATNIPW-------VLDAAIRRRFEKRIYIALPELNARL----FMFRHHL----GNTR---NTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 255 ttn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l----~~~~---~~~~~~~~~~la~~~~g~~~ 316 (330)
+|+.+. .+.+.|..|+.. +.+..|...+|. .+++.++ .+.+ ..+++..+..|......-+.
T Consensus 345 st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNv 423 (520)
T PRK10820 345 ATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNV 423 (520)
T ss_pred ecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHH
Confidence 876542 355677778743 555555554443 3333333 3332 24677778888776555567
Q ss_pred HHHHHHHhhccc
Q psy3808 317 ADISTLERNFKV 328 (330)
Q Consensus 317 ~di~~l~~~a~~ 328 (330)
++|++++.+|+.
T Consensus 424 reL~nvl~~a~~ 435 (520)
T PRK10820 424 RQLKNAIYRALT 435 (520)
T ss_pred HHHHHHHHHHHH
Confidence 888888888764
No 205
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.21 E-value=8e-11 Score=110.56 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=87.6
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----------------
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS---------------- 185 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~---------------- 185 (330)
..|+++.|+..+++.+.-.+ ....+++|.||||||||++++.++..++..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 47899999999988777544 123579999999999999999999755211
Q ss_pred -----------cEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCC-------
Q psy3808 186 -----------TFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVG------- 244 (330)
Q Consensus 186 -----------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~------- 244 (330)
||.....+......+|.....-...+.. ...++||||| ++ ......|...++.-.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~l---A~~GvLfLDE-i~e~~~~~~~~L~~~LE~~~v~i~r~g 330 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISL---AHNGVLFLDE-LPEFKRSVLDALREPIEDGSISISRAS 330 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhc---cCCCeEecCC-hhhCCHHHHHHHHHHHHcCcEEEEecC
Confidence 1111111100000011100000011222 2347999999 55 445556666554321
Q ss_pred ---CCCCcEEEEecCCCC-----C------------------CcCHHHHhccccEEEecCCCHHH
Q psy3808 245 ---NDMDGILVLGATNIP-----W------------------VLDAAIRRRFEKRIYIALPELNA 283 (330)
Q Consensus 245 ---~~~~~v~vi~ttn~~-----~------------------~l~~~l~~Rf~~~i~~~~p~~~~ 283 (330)
....++.+|+++|+- . .+...|++||+..+.++.++..+
T Consensus 331 ~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 331 AKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 012468889999862 1 37788999999999999987663
No 206
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.20 E-value=1.4e-10 Score=110.09 Aligned_cols=162 Identities=22% Similarity=0.182 Sum_probs=95.4
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCC-C-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEe---cccchhcccc
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGK-R-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV---SSSDLVSKWL 200 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~---~~~~~~~~~~ 200 (330)
++.|.+.++..+.-.+.... ......+ . ....++||+|+||||||++|++++...+...|... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~--~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV--HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC--ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 47889988887765553211 1111111 1 11236999999999999999999998743333321 2211211100
Q ss_pred Chh---HHHHH-HHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCC----C------CCCcEEEEecCCCCC---
Q psy3808 201 GES---EKLVK-TLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVG----N------DMDGILVLGATNIPW--- 260 (330)
Q Consensus 201 ~~~---~~~~~-~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~----~------~~~~v~vi~ttn~~~--- 260 (330)
... +..++ ..+ .....++++||| ++. ..+..+...|..-. . -..++.||+|+|+.+
T Consensus 282 ~~~~~g~~~~~~G~l---~~A~~Gil~iDE-i~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y 357 (509)
T smart00350 282 RDPETREFTLEGGAL---VLADNGVCCIDE-FDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRY 357 (509)
T ss_pred EccCcceEEecCccE---EecCCCEEEEec-hhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCccc
Confidence 000 00000 000 112346999999 554 55566666664321 0 124578999999763
Q ss_pred ----------CcCHHHHhccccEE-EecCCCHHHHHHHHHHHhc
Q psy3808 261 ----------VLDAAIRRRFEKRI-YIALPELNARLFMFRHHLG 293 (330)
Q Consensus 261 ----------~l~~~l~~Rf~~~i-~~~~p~~~~r~~il~~~l~ 293 (330)
.+++++++||+..+ ..+.|+.+...+|.++.+.
T Consensus 358 ~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 358 DPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 58899999998864 4477999998888887553
No 207
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.19 E-value=3e-10 Score=104.17 Aligned_cols=193 Identities=19% Similarity=0.255 Sum_probs=122.8
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccc
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKW 199 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~ 199 (330)
....+++|.....+.+.+.+...- ....+|||+|++||||-.+|++|.... .+.||+.+||..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVA----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 467789998888888877763211 122479999999999999999999877 34599999998764321
Q ss_pred -----cChhH-------HHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCCC--------CCcEEEEecCC
Q psy3808 200 -----LGESE-------KLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGND--------MDGILVLGATN 257 (330)
Q Consensus 200 -----~~~~~-------~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~~--------~~~v~vi~ttn 257 (330)
.|... ..-...|+.| ..+.||+|| .+....+..++..++.-.-. .-.|-||++||
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~ 284 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATN 284 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecC
Confidence 11000 0001123322 347999999 34456667777777642211 12478999998
Q ss_pred CCC-------CcCHHHHhccccEEEecCCCHHHHH----HHHHHHh----cCCC---CCCChHhHHHHHHHcCCCCHHHH
Q psy3808 258 IPW-------VLDAAIRRRFEKRIYIALPELNARL----FMFRHHL----GNTR---NTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 258 ~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l----~~~~---~~~~~~~~~~la~~~~g~~~~di 319 (330)
..- .+-..|..|+ .++.+..|...+|. .++++++ ...+ ..+++..+..|.....--+.++|
T Consensus 285 ~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL 363 (464)
T COG2204 285 RDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVREL 363 (464)
T ss_pred cCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHH
Confidence 742 2445666688 45777777766654 3344444 3333 24566666666655544456899
Q ss_pred HHHHhhccc
Q psy3808 320 STLERNFKV 328 (330)
Q Consensus 320 ~~l~~~a~~ 328 (330)
.+++.++.+
T Consensus 364 ~N~ver~~i 372 (464)
T COG2204 364 ENVVERAVI 372 (464)
T ss_pred HHHHHHHHh
Confidence 999988765
No 208
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.19 E-value=4.1e-10 Score=110.42 Aligned_cols=195 Identities=18% Similarity=0.224 Sum_probs=122.0
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVS 197 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~ 197 (330)
+...|++++|.....+.+.+.+..... ...+|||+|++||||+++|++|.... .+.||+.++|..+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 345799999988777776665532211 12469999999999999999999876 246999999987632
Q ss_pred -----cccChh----HHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC-C-------CCcEEEEecCCC
Q psy3808 198 -----KWLGES----EKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN-D-------MDGILVLGATNI 258 (330)
Q Consensus 198 -----~~~~~~----~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~-~-------~~~v~vi~ttn~ 258 (330)
.+.|.. .......|+ ....++||||| .++...+..++..++.-.. + .-++.+|+||+.
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 111111 000000122 12357999999 3345556666666653211 0 014678888876
Q ss_pred C-------CCcCHHHHhccccEEEecCCCHHHHH----HHHHHHhcCC------CCCCChHhHHHHHHHcCCCCHHHHHH
Q psy3808 259 P-------WVLDAAIRRRFEKRIYIALPELNARL----FMFRHHLGNT------RNTISDENLKELAKRTEGYSGADIST 321 (330)
Q Consensus 259 ~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~~~------~~~~~~~~~~~la~~~~g~~~~di~~ 321 (330)
. ..+.+.|..|+. .+.+..|...+|. .+++.++... ...+++..+..|.+..-.-+.++|.+
T Consensus 467 ~l~~~~~~~~f~~dL~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~ 545 (638)
T PRK11388 467 DLAMLVEQNRFSRQLYYALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRS 545 (638)
T ss_pred CHHHHHhcCCChHHHhhhhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHH
Confidence 4 234455555663 4566666665553 3444444321 23468888888988876667789999
Q ss_pred HHhhccc
Q psy3808 322 LERNFKV 328 (330)
Q Consensus 322 l~~~a~~ 328 (330)
+++.|.+
T Consensus 546 ~l~~~~~ 552 (638)
T PRK11388 546 VIENLAL 552 (638)
T ss_pred HHHHHHH
Confidence 9988764
No 209
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.19 E-value=2.2e-10 Score=108.28 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=115.7
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHH--------h--CCCcEEEec
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATE--------A--NNSTFFSVS 191 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~--------~--~~~~~~~~~ 191 (330)
..|++++|.....+.+.+.+...- ....+|||+|++||||+++|++|... . .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 468899999888888877763221 12247999999999999999999987 2 356999999
Q ss_pred ccchhcccc-----ChhH--------HHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC--------CCC
Q psy3808 192 SSDLVSKWL-----GESE--------KLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN--------DMD 248 (330)
Q Consensus 192 ~~~~~~~~~-----~~~~--------~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~--------~~~ 248 (330)
|..+..... |... ..-..+|+.+ ..+.||||| .+....+..|+..++.-.- ..-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~ 362 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPV 362 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceecc
Confidence 987643211 1000 0001233332 346899999 3345566667776654211 012
Q ss_pred cEEEEecCCCCC-------CcCHHHHhccccEEEecCCCHHHH----HHHHHHHhcC----CCCCCChHhH-------HH
Q psy3808 249 GILVLGATNIPW-------VLDAAIRRRFEKRIYIALPELNAR----LFMFRHHLGN----TRNTISDENL-------KE 306 (330)
Q Consensus 249 ~v~vi~ttn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r----~~il~~~l~~----~~~~~~~~~~-------~~ 306 (330)
.+.+|++|+..- .+.+.+..|+.. +.+..|...+| ..++++++.. .+..++...+ ..
T Consensus 363 dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~ 441 (538)
T PRK15424 363 DVRVISATHCDLEEDVRQGRFRRDLFYRLSI-LRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETL 441 (538)
T ss_pred ceEEEEecCCCHHHHHhcccchHHHHHHhcC-CeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHH
Confidence 367888887642 133455556633 55556655544 3455556543 3333454433 33
Q ss_pred HHHHcCCCCHHHHHHHHhhccc
Q psy3808 307 LAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 307 la~~~~g~~~~di~~l~~~a~~ 328 (330)
|.....--+.++|+++++++++
T Consensus 442 L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 442 LLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HHhCCCCchHHHHHHHHHHHHH
Confidence 4444444456889998888754
No 210
>KOG0745|consensus
Probab=99.18 E-value=7.5e-10 Score=98.62 Aligned_cols=169 Identities=21% Similarity=0.422 Sum_probs=115.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh-ccccChh-HHHHHHHHHHHH----hcCCeEEEEeCCcc---
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV-SKWLGES-EKLVKTLFELAR----AHRPSIIFIDERID--- 229 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~f~~a~----~~~~~ii~iDe~~~--- 229 (330)
.+|||.||+|+|||.||+.+|..+ +.||.-.+|..+. ..|+|+. +..+..+...|. ..+.+|+|||| +|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDE-vDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDE-VDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEeh-hhhhc
Confidence 479999999999999999999999 7999999998875 4688875 556666665443 23557999999 43
Q ss_pred --------------hhhHHHHHHHHhcCCCC------------------CCcEEEEecCCC-------------------
Q psy3808 230 --------------RGISNALFLLLSGVGND------------------MDGILVLGATNI------------------- 258 (330)
Q Consensus 230 --------------~~~~~~l~~~l~~~~~~------------------~~~v~vi~ttn~------------------- 258 (330)
+.++..|+.++++-.-+ ..+|+||+...-
T Consensus 305 ~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg 384 (564)
T KOG0745|consen 305 KKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFG 384 (564)
T ss_pred ccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccC
Confidence 45677888888763211 123566644200
Q ss_pred -C------------------------------------CCcCHHHHhccccEEEecCCCHHHHHHHHHH-----------
Q psy3808 259 -P------------------------------------WVLDAAIRRRFEKRIYIALPELNARLFMFRH----------- 290 (330)
Q Consensus 259 -~------------------------------------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~----------- 290 (330)
| +-+-|.|.-||+..+.|...+.+...+++..
T Consensus 385 ~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~ 464 (564)
T KOG0745|consen 385 APSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKK 464 (564)
T ss_pred CCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHH
Confidence 0 0134788889999999999999988877642
Q ss_pred HhcCC--CCCCChHhHHHHHHHc--CCCCHHHHHHHHhhcccc
Q psy3808 291 HLGNT--RNTISDENLKELAKRT--EGYSGADISTLERNFKVD 329 (330)
Q Consensus 291 ~l~~~--~~~~~~~~~~~la~~~--~g~~~~di~~l~~~a~~~ 329 (330)
++.-. ...+++..+..+|+.. .+--.+-|..++..++++
T Consensus 465 lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lle 507 (564)
T KOG0745|consen 465 LFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLE 507 (564)
T ss_pred HhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhh
Confidence 22222 2235777788887653 333345677777776664
No 211
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.18 E-value=8.2e-10 Score=105.17 Aligned_cols=191 Identities=18% Similarity=0.211 Sum_probs=122.0
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcccc
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWL 200 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~ 200 (330)
.+.+++|.....+.+.+.+...- ....+|||+|++||||+++|++|.... .+.+|+.++|..+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 67789998888888877774321 122579999999999999999999876 346899999987643211
Q ss_pred -----ChhHH-------HHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC--------CCCcEEEEecCC
Q psy3808 201 -----GESEK-------LVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVGN--------DMDGILVLGATN 257 (330)
Q Consensus 201 -----~~~~~-------~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~--------~~~~v~vi~ttn 257 (330)
|.... .....|.. ...+.||||| ++ ...+..++..++...- ....+.+|++|+
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~lde-I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDE-IGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhh---cCCCEEEecC-hhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 10000 00012222 2357899999 55 4555566666654221 112478888887
Q ss_pred CCC-------CcCHHHHhccccEEEecCCCHHHHH----HHHHHHhc----C---CCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 258 IPW-------VLDAAIRRRFEKRIYIALPELNARL----FMFRHHLG----N---TRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 258 ~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~----~---~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
... .+.+.|..|+.. +.+..|...+|. .++++++. + ....+++..+..|....---+..+|
T Consensus 331 ~~l~~~~~~~~f~~dL~~rl~~-~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL 409 (509)
T PRK05022 331 RDLREEVRAGRFRADLYHRLSV-FPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVREL 409 (509)
T ss_pred CCHHHHHHcCCccHHHHhcccc-cEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHH
Confidence 642 355667677743 455555544443 34444433 2 2245788888889888777778999
Q ss_pred HHHHhhccc
Q psy3808 320 STLERNFKV 328 (330)
Q Consensus 320 ~~l~~~a~~ 328 (330)
++++++|++
T Consensus 410 ~~~i~ra~~ 418 (509)
T PRK05022 410 EHVISRAAL 418 (509)
T ss_pred HHHHHHHHH
Confidence 999988864
No 212
>PRK08116 hypothetical protein; Validated
Probab=99.16 E-value=3.8e-10 Score=98.30 Aligned_cols=118 Identities=18% Similarity=0.282 Sum_probs=71.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccCh----hHHHHHHHHHHHHhcCCeEEEEeCCcc---
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGE----SEKLVKTLFELARAHRPSIIFIDERID--- 229 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~a~~~~~~ii~iDe~~~--- 229 (330)
.+++|+|+||||||+||.++++.+ .+.+++.++..++...+... .......++... ....+|+||| +.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDD-lg~e~ 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDD-LGAER 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEec-ccCCC
Confidence 579999999999999999999987 35678888887765432111 111111222222 2346999999 52
Q ss_pred --hhhHHHHHHHHhcCCCCCCcEEEEecCCCC-CC----cCHHHHhcc---ccEEEecCCCH
Q psy3808 230 --RGISNALFLLLSGVGNDMDGILVLGATNIP-WV----LDAAIRRRF---EKRIYIALPEL 281 (330)
Q Consensus 230 --~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~-~~----l~~~l~~Rf---~~~i~~~~p~~ 281 (330)
......+..+++..... +..+|.|||.+ .. ++..+.+|+ ...|.++-||.
T Consensus 192 ~t~~~~~~l~~iin~r~~~--~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 DTEWAREKVYNIIDSRYRK--GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCHHHHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 23445566666653322 22345567654 33 456777774 23455555654
No 213
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-10 Score=104.71 Aligned_cols=196 Identities=17% Similarity=0.176 Sum_probs=115.0
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---CCCcEEEecccchh
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---NNSTFFSVSSSDLV 196 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---~~~~~~~~~~~~~~ 196 (330)
....+++++|....-+.+.+-+.. +. ....+||+.|++||||+.+|++|.... ...||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~-------~a---p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA-------YA---PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh-------hC---CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 356788999977766666665532 11 122479999999999999999998554 25699999998775
Q ss_pred ccccCh------------hHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCC-----C---CCCcEEEEe
Q psy3808 197 SKWLGE------------SEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVG-----N---DMDGILVLG 254 (330)
Q Consensus 197 ~~~~~~------------~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~-----~---~~~~v~vi~ 254 (330)
..-... ....-..+|+.| ..+++|+|| .+....+..++..++... . ....|.+|+
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~ 219 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLIC 219 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeee
Confidence 431110 011112233333 246999999 444566777888887622 1 224588888
Q ss_pred cCCCC--CCcCH--HHHh-ccccEEEecCCC--HHHHHHHHHH----HhcCCCCCCCh---HhHHHHHHHcCCCCHHHHH
Q psy3808 255 ATNIP--WVLDA--AIRR-RFEKRIYIALPE--LNARLFMFRH----HLGNTRNTISD---ENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 255 ttn~~--~~l~~--~l~~-Rf~~~i~~~~p~--~~~r~~il~~----~l~~~~~~~~~---~~~~~la~~~~g~~~~di~ 320 (330)
+|+.. ..+-. .+.+ ++...|.+|+.- ..++..+.++ ++.+.+..+.. ..+..|-...---+.++++
T Consensus 220 AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELk 299 (403)
T COG1221 220 ATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELK 299 (403)
T ss_pred ccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHH
Confidence 88642 23333 4444 555555555543 2233334444 44444444333 2344444433222557899
Q ss_pred HHHhhccc
Q psy3808 321 TLERNFKV 328 (330)
Q Consensus 321 ~l~~~a~~ 328 (330)
+++..++.
T Consensus 300 N~Ve~~~~ 307 (403)
T COG1221 300 NLVERAVA 307 (403)
T ss_pred HHHHHHHH
Confidence 99888764
No 214
>PRK12377 putative replication protein; Provisional
Probab=99.14 E-value=2.3e-10 Score=97.93 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=76.6
Q ss_pred cCCCCCccccc----chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEec
Q psy3808 118 EKPNVKWTDVA----GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVS 191 (330)
Q Consensus 118 ~~~~~~~~~~~----G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~ 191 (330)
.....+|+++. |...+......++.... . ...+++|+||||||||+||.++++.+ .+..++.++
T Consensus 67 ~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~-------~---~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 67 LHRKCSFANYQVQNDGQRYALSQAKSIADELM-------T---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred ccccCCcCCcccCChhHHHHHHHHHHHHHHHH-------h---cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34455677665 33345555554442211 1 12589999999999999999999988 456677777
Q ss_pred ccchhccccChh--HHHHHHHHHHHHhcCCeEEEEeCCc-----chhhHHHHHHHHhcCCCCCCcEEEEecCCCCC----
Q psy3808 192 SSDLVSKWLGES--EKLVKTLFELARAHRPSIIFIDERI-----DRGISNALFLLLSGVGNDMDGILVLGATNIPW---- 260 (330)
Q Consensus 192 ~~~~~~~~~~~~--~~~~~~~f~~a~~~~~~ii~iDe~~-----~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~---- 260 (330)
..++........ ......++... ....+|+||| + .......|..+++.-... ..-+|.|||...
T Consensus 137 ~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDD-lg~~~~s~~~~~~l~~ii~~R~~~--~~ptiitSNl~~~~l~ 211 (248)
T PRK12377 137 VPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDE-IGIQRETKNEQVVLNQIIDRRTAS--MRSVGMLTNLNHEAMS 211 (248)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcC-CCCCCCCHHHHHHHHHHHHHHHhc--CCCEEEEcCCCHHHHH
Confidence 777654321100 00011222221 4567999999 4 233445566666553322 122344787652
Q ss_pred -CcCHHHHhcc
Q psy3808 261 -VLDAAIRRRF 270 (330)
Q Consensus 261 -~l~~~l~~Rf 270 (330)
.+...+.+|+
T Consensus 212 ~~~~~ri~dRl 222 (248)
T PRK12377 212 TLLGERVMDRM 222 (248)
T ss_pred HHhhHHHHHHH
Confidence 2344555554
No 215
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.13 E-value=2.5e-09 Score=103.20 Aligned_cols=53 Identities=40% Similarity=0.500 Sum_probs=45.3
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~ 183 (330)
...|..-|++++|++++++.+...+.. .++++|+||||||||+++++++..++
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcC
Confidence 455677889999999999999887732 24899999999999999999999984
No 216
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.3e-11 Score=107.77 Aligned_cols=146 Identities=25% Similarity=0.268 Sum_probs=88.7
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE---EE------ecc
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF---FS------VSS 192 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~---~~------~~~ 192 (330)
..|.||+|++.+|+.+.-+.. ..+++||+||||||||++|+.+...++.... ++ ++.
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g 241 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAG 241 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcc
Confidence 378999999999999987662 2368999999999999999999887632110 11 111
Q ss_pred cchhc--cc-------cChhHHHHHHHH---------HHHHhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCC-------
Q psy3808 193 SDLVS--KW-------LGESEKLVKTLF---------ELARAHRPSIIFIDERIDRGISNALFLLLSGVGNDM------- 247 (330)
Q Consensus 193 ~~~~~--~~-------~~~~~~~~~~~f---------~~a~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~------- 247 (330)
..... .| .+.+... ..+. +....+ -+|+|+|| +.+.....|..+..-+++..
T Consensus 242 ~~~~~~~~~~~rPFr~PHHsaS~-~aLvGGG~~p~PGeIsLAH-~GVLFLDE-lpef~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 242 DLHEGCPLKIHRPFRAPHHSASL-AALVGGGGVPRPGEISLAH-NGVLFLDE-LPEFKRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred cccccCccceeCCccCCCccchH-HHHhCCCCCCCCCceeeec-CCEEEeec-cchhhHHHHHHHhCccccCcEEEEEcC
Confidence 10000 00 0101000 0000 001112 25999999 77666666666665555422
Q ss_pred ------CcEEEEecCCCCC-----------------------CcCHHHHhccccEEEecCCCHHHH
Q psy3808 248 ------DGILVLGATNIPW-----------------------VLDAAIRRRFEKRIYIALPELNAR 284 (330)
Q Consensus 248 ------~~v~vi~ttn~~~-----------------------~l~~~l~~Rf~~~i~~~~p~~~~r 284 (330)
.++.+|+++|+.- .+...|++|+|..+.++.++..++
T Consensus 319 ~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 319 SKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred CeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 2467788887531 144578889999999988774443
No 217
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=5.6e-10 Score=99.70 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=84.1
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCC------------------------CcEEEecccch---hccc-cChhHHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANN------------------------STFFSVSSSDL---VSKW-LGESEKLVK 208 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~------------------------~~~~~~~~~~~---~~~~-~~~~~~~~~ 208 (330)
.++.+||+||+|+|||++|+.+|+.+.+ ..|+.+++..- .++. ..-.-..++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 3468999999999999999999998721 12333333110 0000 000123455
Q ss_pred HHHHHHHh----cCCeEEEEeC--CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHH
Q psy3808 209 TLFELARA----HRPSIIFIDE--RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELN 282 (330)
Q Consensus 209 ~~f~~a~~----~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~ 282 (330)
.+...+.. ...-|++||+ .++....+.++..++... .++.+|.+|..+..+.+.+.+|+ ..+.|++|+.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~SRc-~~~~~~~~~~~ 175 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKSRC-RKMVLPAPSHE 175 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHHHh-hhhcCCCCCHH
Confidence 55544443 3345777776 455666777777776643 34666668888889999999999 56899999988
Q ss_pred HHHHHHHH
Q psy3808 283 ARLFMFRH 290 (330)
Q Consensus 283 ~r~~il~~ 290 (330)
+....+..
T Consensus 176 ~~~~~L~~ 183 (325)
T PRK08699 176 EALAYLRE 183 (325)
T ss_pred HHHHHHHh
Confidence 87766643
No 218
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=2.8e-09 Score=95.40 Aligned_cols=160 Identities=30% Similarity=0.411 Sum_probs=106.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecc------cc
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS------SD 194 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~------~~ 194 (330)
+..|.-++|++..+..|.-..+.| ...++||.|+.|+||||++++|+.-|+....+. .| .+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCCC
Confidence 356778999999999886544321 125899999999999999999999884333221 11 00
Q ss_pred --------------------------hhccccChhHH-HHHH------------HHH---HHHhcCCeEEEEeC--Ccch
Q psy3808 195 --------------------------LVSKWLGESEK-LVKT------------LFE---LARAHRPSIIFIDE--RIDR 230 (330)
Q Consensus 195 --------------------------~~~~~~~~~~~-~~~~------------~f~---~a~~~~~~ii~iDe--~~~~ 230 (330)
+...-.+.++. .+.. .|. .++.+ .+|++||| .++.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~d 158 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLDD 158 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccccH
Confidence 00000122233 2211 111 12222 35999999 6678
Q ss_pred hhHHHHHHHHhcCCC----------CCCcEEEEecCCCC-CCcCHHHHhccccEEEecCC-CHHHHHHHHHHHhcC
Q psy3808 231 GISNALFLLLSGVGN----------DMDGILVLGATNIP-WVLDAAIRRRFEKRIYIALP-ELNARLFMFRHHLGN 294 (330)
Q Consensus 231 ~~~~~l~~~l~~~~~----------~~~~v~vi~ttn~~-~~l~~~l~~Rf~~~i~~~~p-~~~~r~~il~~~l~~ 294 (330)
.+++.|+..+....+ ...++++|+|+|+. ..|-|.|+.||+..+.+..| +.+.|.+|.++...-
T Consensus 159 ~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 159 HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 888888888765311 22468999999987 47889999999999998765 678889998876554
No 219
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=2.8e-09 Score=92.74 Aligned_cols=117 Identities=19% Similarity=0.128 Sum_probs=80.7
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCC---------------cEEEecccchhccccChhHHHHHHHHHHHH----hcC
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNS---------------TFFSVSSSDLVSKWLGESEKLVKTLFELAR----AHR 218 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~ 218 (330)
++.+||+||+|+||+.+|.++|..+-+. .++.+.+..- +... .-..++.+..... ...
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~~I--~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GRLH--SIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CCcC--cHHHHHHHHHHHhhCccCCC
Confidence 4789999999999999999999987221 1111211100 0000 1223344433332 234
Q ss_pred CeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCC
Q psy3808 219 PSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALP 279 (330)
Q Consensus 219 ~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p 279 (330)
.-|++|++ .+.....+...++.-++++.+++++|..|+.+..+.|.++||+ ..+.|+++
T Consensus 96 ~kv~ii~~-ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHE-ADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred ceEEEEec-hhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 46999999 8887777777777777778889999999999999999999999 45777765
No 220
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.06 E-value=5.6e-11 Score=89.54 Aligned_cols=102 Identities=28% Similarity=0.334 Sum_probs=55.6
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc------chhccccChhHH-----HHHHHHHHHHhcCCeEEEEeCCc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS------DLVSKWLGESEK-----LVKTLFELARAHRPSIIFIDERI 228 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~f~~a~~~~~~ii~iDe~~ 228 (330)
|+||+|+||+|||++|+++|..+ +..|.++.+. ++.+..+-.... .-.-+| ..|+++|| +
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DE-i 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADE-I 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEET-G
T ss_pred CEeeECCCccHHHHHHHHHHHHc-CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeecc-c
Confidence 68999999999999999999999 6788766542 222111100000 001111 25999999 5
Q ss_pred c---hhhHHHHHHHHhcCCC--------CCCcEEEEecCCCCC-----CcCHHHHhcc
Q psy3808 229 D---RGISNALFLLLSGVGN--------DMDGILVLGATNIPW-----VLDAAIRRRF 270 (330)
Q Consensus 229 ~---~~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~~-----~l~~~l~~Rf 270 (330)
+ ...+.+++..+..-.- -.+.++||+|.|+.+ .++.+++.||
T Consensus 72 NrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 72 NRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp GGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 5 4566677777764321 124578998988765 6788888888
No 221
>KOG2680|consensus
Probab=99.04 E-value=1.3e-08 Score=86.76 Aligned_cols=93 Identities=23% Similarity=0.250 Sum_probs=67.3
Q ss_pred CeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCC------------CCCCcCHHHHhccccEEEecCCCHHHHHH
Q psy3808 219 PSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATN------------IPWVLDAAIRRRFEKRIYIALPELNARLF 286 (330)
Q Consensus 219 ~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn------------~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~ 286 (330)
|+|+|||| .+-.-...|..+-..++++..+++++ +|| .|+.++..|+.|. .+|...+++.++...
T Consensus 289 pGVLFIDE-vHMLDIEcFsFlNrAlE~d~~Piiim-aTNrgit~iRGTn~~SphGiP~D~lDR~-lII~t~py~~~d~~~ 365 (454)
T KOG2680|consen 289 PGVLFIDE-VHMLDIECFSFLNRALENDMAPIIIM-ATNRGITRIRGTNYRSPHGIPIDLLDRM-LIISTQPYTEEDIKK 365 (454)
T ss_pred cceEEEee-ehhhhhHHHHHHHHHhhhccCcEEEE-EcCCceEEeecCCCCCCCCCcHHHhhhh-heeecccCcHHHHHH
Confidence 66777777 55444444444444455555666666 444 3667888999998 778899999999999
Q ss_pred HHHHHhcCCCCCCChHhHHHHHHHcCCC
Q psy3808 287 MFRHHLGNTRNTISDENLKELAKRTEGY 314 (330)
Q Consensus 287 il~~~l~~~~~~~~~~~~~~la~~~~g~ 314 (330)
|++..|......+.+..++.|......-
T Consensus 366 IL~iRc~EEdv~m~~~A~d~Lt~i~~~t 393 (454)
T KOG2680|consen 366 ILRIRCQEEDVEMNPDALDLLTKIGEAT 393 (454)
T ss_pred HHHhhhhhhccccCHHHHHHHHHhhhhh
Confidence 9999999998888888888777765543
No 222
>KOG1051|consensus
Probab=99.03 E-value=1.7e-09 Score=105.87 Aligned_cols=126 Identities=25% Similarity=0.341 Sum_probs=90.4
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchh-------
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLV------- 196 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~------- 196 (330)
.|+|++++...+.+++..... ..... .|..+++|.||.|+|||-||+++|..+. ...++++++++++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~---gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA---GLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc---ccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 489999999999999855432 11111 3567899999999999999999999983 3468999998642
Q ss_pred --ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh---HHHHHHHHhcCCC--------CCCcEEEEecCCC
Q psy3808 197 --SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI---SNALFLLLSGVGN--------DMDGILVLGATNI 258 (330)
Q Consensus 197 --~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~---~~~l~~~l~~~~~--------~~~~v~vi~ttn~ 258 (330)
..|.|.. ....+.+..+..+.+||+||| ++... .+.++++++...- +..+++||+|+|.
T Consensus 639 sp~gyvG~e--~gg~LteavrrrP~sVVLfde-IEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 639 SPPGYVGKE--EGGQLTEAVKRRPYSVVLFEE-IEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred CCcccccch--hHHHHHHHHhcCCceEEEEec-hhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 2345444 334778888888899999999 66554 4555566665432 2346899989754
No 223
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.03 E-value=7.8e-09 Score=97.52 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=113.8
Q ss_pred ccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEe-c
Q psy3808 113 GAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV-S 191 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~-~ 191 (330)
..++.++.+.+.+||+-...-++.++.++..... ...+.+-+||+||||||||++++.+|+++ +..+... +
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~el-g~~v~Ew~n 78 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKEL-GFEVQEWIN 78 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHh-CCeeEEecC
Confidence 3566788999999999988888888887753221 11223468889999999999999999999 5655542 2
Q ss_pred ccchh------ccccC----------hhHHHHHHH-HHHHHh-----------cCCeEEEEeCCcc-------hhhHHHH
Q psy3808 192 SSDLV------SKWLG----------ESEKLVKTL-FELARA-----------HRPSIIFIDERID-------RGISNAL 236 (330)
Q Consensus 192 ~~~~~------~~~~~----------~~~~~~~~~-f~~a~~-----------~~~~ii~iDe~~~-------~~~~~~l 236 (330)
+..+. ..+.+ .... .... +..++. ..+.||+|+| +. ....+.+
T Consensus 79 p~~~~~~~~~~~d~~s~~~~~~~f~sq~~~-F~~f~l~~s~y~~l~~~g~~~~~~~kvILVED-lPN~~~~~~~~f~~~L 156 (519)
T PF03215_consen 79 PVSFRESDNQEDDFESDFNKFDEFLSQSDK-FSEFLLRASKYSSLSMSGSNSSSNKKVILVED-LPNVFHRDTSRFREAL 156 (519)
T ss_pred CCCccccccccccccccccccccccchhhh-hccccccccccccccccCCCcCCCceEEEeec-cccccchhHHHHHHHH
Confidence 22210 01111 1110 1111 111111 2456999999 33 2233333
Q ss_pred HHHHhcCCCCCC-cEEEEec-C------CCC--------CCcCHHHHhccc-cEEEecCCCHHHHHHHHHHHhcCC----
Q psy3808 237 FLLLSGVGNDMD-GILVLGA-T------NIP--------WVLDAAIRRRFE-KRIYIALPELNARLFMFRHHLGNT---- 295 (330)
Q Consensus 237 ~~~l~~~~~~~~-~v~vi~t-t------n~~--------~~l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~~---- 295 (330)
...+.. ... .++||.+ + |.. ..+++.++.... ..|.|-+-........|.+.+...
T Consensus 157 ~~~l~~---~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 157 RQYLRS---SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHHc---CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 333332 122 5566555 1 111 135667766221 458887777766666666655543
Q ss_pred -C-CCCC--hHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 296 -R-NTIS--DENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 296 -~-~~~~--~~~~~~la~~~~g~~~~di~~l~ 323 (330)
+ ...+ ...++.|+..+.|...+.|.+|-
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQ 265 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNLQ 265 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHHH
Confidence 1 1122 23488999998887777777664
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.02 E-value=2.2e-09 Score=91.74 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=62.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccCh---hHHHHHHHHHHHHhcCCeEEEEeCCcchh--
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGE---SEKLVKTLFELARAHRPSIIFIDERIDRG-- 231 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-- 231 (330)
.+++|+||||||||+|+.+++..+ .+..++.++..++....... .......++... ....+|+||| +...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDD-ig~~~~ 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDE-IGVQTE 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeC-CCCCCC
Confidence 489999999999999999999988 35677778887776532211 011112233322 2467999999 4322
Q ss_pred ---hHHHHHHHHhcCCCCCCcEEEEecCCCCC-----CcCHHHHhcc
Q psy3808 232 ---ISNALFLLLSGVGNDMDGILVLGATNIPW-----VLDAAIRRRF 270 (330)
Q Consensus 232 ---~~~~l~~~l~~~~~~~~~v~vi~ttn~~~-----~l~~~l~~Rf 270 (330)
....+..+++.-... .. .+|.|||... .+...+.+|+
T Consensus 177 s~~~~~~l~~Ii~~Ry~~-~~-~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 177 SRYEKVIINQIVDRRSSS-KR-PTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred CHHHHHHHHHHHHHHHhC-CC-CEEEeCCCCHHHHHHHhChHHHHHH
Confidence 233455555542221 22 3344777542 2344455554
No 225
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.01 E-value=3.3e-09 Score=96.46 Aligned_cols=196 Identities=20% Similarity=0.235 Sum_probs=121.4
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV 196 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~ 196 (330)
.+...+.++||...+...+.+.+..-. .....|||.|.+||||..+|++|.+.. .+.||+.+||+.+.
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 345678899999988888877774321 122479999999999999999999877 35699999998764
Q ss_pred ccccChhHH--HHHHHHHHHHh--------cCCeEEEEeC--CcchhhHHHHHHHHhcCCCCC--------CcEEEEecC
Q psy3808 197 SKWLGESEK--LVKTLFELARA--------HRPSIIFIDE--RIDRGISNALFLLLSGVGNDM--------DGILVLGAT 256 (330)
Q Consensus 197 ~~~~~~~~~--~~~~~f~~a~~--------~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~~~--------~~v~vi~tt 256 (330)
.... +++- -.+..|.-|.. ...+.+|+|| .+.-..+..++..++..+-.. -.|-||++|
T Consensus 287 esLl-ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAAT 365 (550)
T COG3604 287 ESLL-ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAAT 365 (550)
T ss_pred hHHH-HHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEecc
Confidence 3211 1100 01112221111 1346999999 334566777777777533211 137899999
Q ss_pred CCCCCcCHH---------HHhccccEEEecCCCHHHHH--------HHHHHHhcCCC---CCCChHhHHHHHHHcCCCCH
Q psy3808 257 NIPWVLDAA---------IRRRFEKRIYIALPELNARL--------FMFRHHLGNTR---NTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 257 n~~~~l~~~---------l~~Rf~~~i~~~~p~~~~r~--------~il~~~l~~~~---~~~~~~~~~~la~~~~g~~~ 316 (330)
|+ ++... |.-|.. ++.+..|...+|. ..++.+..+.+ ..++...++.|....---+.
T Consensus 366 NR--DL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNV 442 (550)
T COG3604 366 NR--DLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNV 442 (550)
T ss_pred ch--hHHHHHHcCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcH
Confidence 98 33333 333552 3444445544432 22233333333 34567778888776654566
Q ss_pred HHHHHHHhhccc
Q psy3808 317 ADISTLERNFKV 328 (330)
Q Consensus 317 ~di~~l~~~a~~ 328 (330)
+++++++++|.+
T Consensus 443 RELen~veRavl 454 (550)
T COG3604 443 RELENVVERAVL 454 (550)
T ss_pred HHHHHHHHHHHH
Confidence 899999998875
No 226
>PRK08181 transposase; Validated
Probab=98.99 E-value=1.9e-09 Score=93.49 Aligned_cols=120 Identities=25% Similarity=0.354 Sum_probs=70.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChh-HHHHHHHHHHHHhcCCeEEEEeC----Ccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGES-EKLVKTLFELARAHRPSIIFIDE----RIDRG 231 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~a~~~~~~ii~iDe----~~~~~ 231 (330)
.+++|+||||||||+||.+++..+ .|..++.++..++........ .......+.. ...+.+|+||| ..+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTKDQA 184 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEeccccccCCHH
Confidence 579999999999999999999876 456677778777665431110 0111222222 23567999999 22344
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEecCCCCCC----------cCHHHHhccc---cEEEecCCCHHH
Q psy3808 232 ISNALFLLLSGVGNDMDGILVLGATNIPWV----------LDAAIRRRFE---KRIYIALPELNA 283 (330)
Q Consensus 232 ~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~----------l~~~l~~Rf~---~~i~~~~p~~~~ 283 (330)
....+..+++..... +- +|.|||.+.. +..++.+|+- ..+.+.-.++..
T Consensus 185 ~~~~Lf~lin~R~~~--~s-~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~ 246 (269)
T PRK08181 185 ETSVLFELISARYER--RS-ILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRR 246 (269)
T ss_pred HHHHHHHHHHHHHhC--CC-EEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchh
Confidence 445677777654332 23 4447776521 2245566652 235555445443
No 227
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=6.3e-09 Score=84.09 Aligned_cols=98 Identities=28% Similarity=0.420 Sum_probs=60.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcccc-----Chh-------HHHHHHHHHHHHhcCCeEEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWL-----GES-------EKLVKTLFELARAHRPSIIFI 224 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~f~~a~~~~~~ii~i 224 (330)
.+|||+|++||||+.+|++|.... .+.||+.++|+.+..... |.. ......+++.| ..++|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEee
Confidence 579999999999999999999976 356999999987632211 100 00001233333 3479999
Q ss_pred eC--CcchhhHHHHHHHHhcCC-----CC---CCcEEEEecCCCC
Q psy3808 225 DE--RIDRGISNALFLLLSGVG-----ND---MDGILVLGATNIP 259 (330)
Q Consensus 225 De--~~~~~~~~~l~~~l~~~~-----~~---~~~v~vi~ttn~~ 259 (330)
|| .+....+..|+..++.-. .. ..++.||++|+.+
T Consensus 100 d~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 100 DEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp ETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 99 334566677777776421 11 1258889888763
No 228
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.98 E-value=4.2e-09 Score=101.47 Aligned_cols=134 Identities=17% Similarity=0.230 Sum_probs=87.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccchhccccChhH--HHHH-H--HHH--HHHhcCCeEEEEeC--Cc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSDLVSKWLGESE--KLVK-T--LFE--LARAHRPSIIFIDE--RI 228 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~-~--~f~--~a~~~~~~ii~iDe--~~ 228 (330)
.+|||.|+||||||++|++++..++. .+|+.+.........+|... ..+. . .|. .......++||+|| .+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 58999999999999999999998743 36887765333233333220 0000 0 000 00012236999999 44
Q ss_pred chhhHHHHHHHHhcCCC----------CCCcEEEEecCCCCC---CcCHHHHhccccEEEecC-CCHHHHHHHHHHHh
Q psy3808 229 DRGISNALFLLLSGVGN----------DMDGILVLGATNIPW---VLDAAIRRRFEKRIYIAL-PELNARLFMFRHHL 292 (330)
Q Consensus 229 ~~~~~~~l~~~l~~~~~----------~~~~v~vi~ttn~~~---~l~~~l~~Rf~~~i~~~~-p~~~~r~~il~~~l 292 (330)
+...+..|+..++.-.. ....+.||+|+|..+ .+.+++..||...+.+.. |+..+|.+|++..+
T Consensus 97 ~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 97 DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHH
Confidence 55666777777754220 113578899888765 688999999999877754 57777888887765
No 229
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.98 E-value=2.1e-09 Score=100.70 Aligned_cols=143 Identities=24% Similarity=0.295 Sum_probs=85.8
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---cEEEecc------
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS---TFFSVSS------ 192 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~---~~~~~~~------ 192 (330)
..|.++.|...+++.+.-.+ ....+++|.||||||||++++.++..++.. ..+.++.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 37788999888777654322 123579999999999999999999876211 1111111
Q ss_pred c-----ch-----hcc--------ccChhHHHHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC------
Q psy3808 193 S-----DL-----VSK--------WLGESEKLVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVGN------ 245 (330)
Q Consensus 193 ~-----~~-----~~~--------~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~------ 245 (330)
. .+ .+. .+|.....-...+..| ..+++|+|| ++ ......+...++.-.-
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A---~gGvLfLDE-i~e~~~~~~~~L~~~LE~g~v~I~r~g 329 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA---HNGVLFLDE-LPEFERRTLDALREPIESGQIHLSRTR 329 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc---cCCEEecCC-chhCCHHHHHHHHHHHHcCcEEEecCC
Confidence 0 00 000 0111000001122222 236999999 54 4455566665543221
Q ss_pred ----CCCcEEEEecCCCCC---------------------CcCHHHHhccccEEEecCCCHH
Q psy3808 246 ----DMDGILVLGATNIPW---------------------VLDAAIRRRFEKRIYIALPELN 282 (330)
Q Consensus 246 ----~~~~v~vi~ttn~~~---------------------~l~~~l~~Rf~~~i~~~~p~~~ 282 (330)
...++.+|+|+|+.. .+..++++||+..+.++.|+.+
T Consensus 330 ~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 330 AKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 124689999998752 3667899999999999988654
No 230
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.95 E-value=1.4e-08 Score=95.59 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=118.0
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcccc
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWL 200 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~ 200 (330)
.+.+++|.....+.+...+.... ....+++|+|++||||+++|+++.... .+.+|+.++|..+...+.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45568887766666665552211 122469999999999999999999876 245899999987632211
Q ss_pred ChhHHHHHHHHHH---------------HHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC--------CCCcEEEEec
Q psy3808 201 GESEKLVKTLFEL---------------ARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN--------DMDGILVLGA 255 (330)
Q Consensus 201 ~~~~~~~~~~f~~---------------a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~--------~~~~v~vi~t 255 (330)
-..+|.. ......++||||| .++...+..++..+..-.. ...++.+|++
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEe
Confidence 1112211 1113457999999 3344556666666654211 0124678888
Q ss_pred CCCC-------CCcCHHHHhccccEEEecCCCHHHHHH----HHHHHhcC----CC---CCCChHhHHHHHHHcCCCCHH
Q psy3808 256 TNIP-------WVLDAAIRRRFEKRIYIALPELNARLF----MFRHHLGN----TR---NTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 256 tn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~~----il~~~l~~----~~---~~~~~~~~~~la~~~~g~~~~ 317 (330)
|+.. ..+.+.|..|+. .+.+..|...+|.+ +++.++.. .+ ..+++..+..|.....--+..
T Consensus 281 ~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvr 359 (445)
T TIGR02915 281 TNQDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVR 359 (445)
T ss_pred cCCCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHH
Confidence 8765 245566777773 35556666555543 44444332 22 346888888898887666778
Q ss_pred HHHHHHhhccc
Q psy3808 318 DISTLERNFKV 328 (330)
Q Consensus 318 di~~l~~~a~~ 328 (330)
+|.+++++|+.
T Consensus 360 eL~~~i~~a~~ 370 (445)
T TIGR02915 360 ELENKVKRAVI 370 (445)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 231
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.94 E-value=4.9e-09 Score=102.94 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=89.7
Q ss_pred ccchHHHHHHHHHHhhcccCCccccc---C-----C-CCCCcceEEECCCCCchHHHHHHHHHHhC------CCcEEEec
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFT---G-----K-RVPWKGILLFGPPGTGKSYLAKAVATEAN------NSTFFSVS 191 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~---~-----~-~~~~~~ill~GppGtGKT~la~~la~~~~------~~~~~~~~ 191 (330)
|.|.+.+|+.+.-.+.-......-.. . . .....+|||+|+||||||.+|+++++..+ |.++..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 77888888887654432221100000 0 0 01123799999999999999999998652 12222222
Q ss_pred ccchhccccChhHHHHHHHHH--HHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCC----------CCCCcEEEEecC
Q psy3808 192 SSDLVSKWLGESEKLVKTLFE--LARAHRPSIIFIDERIDR---GISNALFLLLSGVG----------NDMDGILVLGAT 256 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f~--~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~----------~~~~~v~vi~tt 256 (330)
+..... +.+..... ..++ .......++++||| ++. ..+..+...|..-. .-..++.||+|+
T Consensus 532 LTa~~~-~~d~~tG~--~~le~GaLvlAdgGtL~IDE-idkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAa 607 (915)
T PTZ00111 532 LTASIK-FNESDNGR--AMIQPGAVVLANGGVCCIDE-LDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASC 607 (915)
T ss_pred ccchhh-hcccccCc--ccccCCcEEEcCCCeEEecc-hhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEc
Confidence 221110 00000000 0000 00112346999999 654 44566666664321 012468899999
Q ss_pred CCCC-------------CcCHHHHhccccE-EEecCCCHHHHHHHHHHHh
Q psy3808 257 NIPW-------------VLDAAIRRRFEKR-IYIALPELNARLFMFRHHL 292 (330)
Q Consensus 257 n~~~-------------~l~~~l~~Rf~~~-i~~~~p~~~~r~~il~~~l 292 (330)
|+.+ .+++++++||+.+ +.++.|+.+.-..|-.+.+
T Consensus 608 NP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 608 NPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred CCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 9852 4679999999887 4457777766666555444
No 232
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.93 E-value=3.6e-09 Score=90.39 Aligned_cols=175 Identities=22% Similarity=0.268 Sum_probs=91.2
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE--EEecc-cchh----ccc
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF--FSVSS-SDLV----SKW 199 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~--~~~~~-~~~~----~~~ 199 (330)
++|.+.-.+.|.+.+.. .+...++|+||+|+|||+|++.+...+..... +.+.. .... ...
T Consensus 1 F~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 35666666667665521 12357999999999999999999998732111 11111 0000 000
Q ss_pred ------------------------------cChhHHHHHHHHHHHHhc-CCeEEEEeCCcchhh---------HHHHHHH
Q psy3808 200 ------------------------------LGESEKLVKTLFELARAH-RPSIIFIDERIDRGI---------SNALFLL 239 (330)
Q Consensus 200 ------------------------------~~~~~~~~~~~f~~a~~~-~~~ii~iDe~~~~~~---------~~~l~~~ 239 (330)
.......+..++...... ...||+||| ++... ...+...
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe-~~~~~~~~~~~~~~~~~l~~~ 147 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDE-FQYLAIASEEDKDFLKSLRSL 147 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEET-GGGGGBCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEec-HHHHhhcccchHHHHHHHHHH
Confidence 011123344555544433 348999999 55444 2344444
Q ss_pred HhcCCCCCCcEEEEecCCCC-----CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCC--ChHhHHHHHHHcC
Q psy3808 240 LSGVGNDMDGILVLGATNIP-----WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTI--SDENLKELAKRTE 312 (330)
Q Consensus 240 l~~~~~~~~~v~vi~ttn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~--~~~~~~~la~~~~ 312 (330)
++.........+|+++|+.. ..-...+..|+.. +.+++.+.++..+++...+... ..+ ++.++..+...++
T Consensus 148 ~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~g 225 (234)
T PF01637_consen 148 LDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTG 225 (234)
T ss_dssp HHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHT
T ss_pred HhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhC
Confidence 54433332333444444321 1122345567766 9999999999999999987776 444 8889999999999
Q ss_pred CCCH
Q psy3808 313 GYSG 316 (330)
Q Consensus 313 g~~~ 316 (330)
|..+
T Consensus 226 G~P~ 229 (234)
T PF01637_consen 226 GNPR 229 (234)
T ss_dssp T-HH
T ss_pred CCHH
Confidence 9765
No 233
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=8.1e-08 Score=83.90 Aligned_cols=143 Identities=13% Similarity=0.057 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC------cE-EEecccchhcc----
Q psy3808 130 LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS------TF-FSVSSSDLVSK---- 198 (330)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~------~~-~~~~~~~~~~~---- 198 (330)
+..+++.+...+. .+..++.+||+|| +||+++|+++|..+-+. +. .+-+|..+...
T Consensus 7 q~~~~~~L~~~~~-----------~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILE-----------QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHH-----------cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4456666666552 2233478999996 68999999999877211 00 01111111000
Q ss_pred --cc---Ch--hHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHH
Q psy3808 199 --WL---GE--SEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIR 267 (330)
Q Consensus 199 --~~---~~--~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~ 267 (330)
++ |. .-..++.+..... .....|++||+ .+.....+...++..++++..++++|.+|+.+..+.|.++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~-ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~ 152 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKD-ADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIK 152 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeeh-hhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHH
Confidence 00 11 1233444433332 23446999999 8888877777888888888888999999999999999999
Q ss_pred hccccEEEecCCCHHHHHHHH
Q psy3808 268 RRFEKRIYIALPELNARLFMF 288 (330)
Q Consensus 268 ~Rf~~~i~~~~p~~~~r~~il 288 (330)
||+ ..+.|+. +.+....++
T Consensus 153 SRc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 153 SRT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred Hcc-eeeeCCC-cHHHHHHHH
Confidence 999 5578866 444444444
No 234
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.1e-08 Score=84.38 Aligned_cols=121 Identities=11% Similarity=-0.027 Sum_probs=81.5
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCCCc----E-EEecccchhc--------cccC---hhHHHHHHHHHH----HHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANNST----F-FSVSSSDLVS--------KWLG---ESEKLVKTLFEL----ARA 216 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~~~----~-~~~~~~~~~~--------~~~~---~~~~~~~~~f~~----a~~ 216 (330)
+++.+||+||+|+||..+|.++|..+-+.. . .+-+|..+.. -+.. -.-..++.+... +..
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 457899999999999999999998771110 0 0011111100 0000 012223333322 212
Q ss_pred -cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCC
Q psy3808 217 -HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALP 279 (330)
Q Consensus 217 -~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p 279 (330)
...-|++|++ .+.....+...++.-++++..++++|..|+.++.+.|.++||+.. +.|+.+
T Consensus 86 ~~~~KV~II~~-ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 86 SNGKKIYIIYG-IEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred cCCCEEEEecc-HhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 2356999999 888888888888888888889999999999999999999999944 677776
No 235
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.90 E-value=2e-08 Score=95.23 Aligned_cols=188 Identities=19% Similarity=0.208 Sum_probs=116.8
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcccc
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWL 200 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~ 200 (330)
.+.+++|.....+.+.+.+.... .....++++|++|||||++|+++.... .+.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 45678887766666655442111 122469999999999999999999876 24689999998763221
Q ss_pred ChhHHHHHHHHHHH---------------HhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC--------CCCcEEEEe
Q psy3808 201 GESEKLVKTLFELA---------------RAHRPSIIFIDERID---RGISNALFLLLSGVGN--------DMDGILVLG 254 (330)
Q Consensus 201 ~~~~~~~~~~f~~a---------------~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~--------~~~~v~vi~ 254 (330)
.-..+|... .....+.+|||| ++ ...+..++..++.... ....+.+|+
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~-i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~ 278 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE-IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIA 278 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEec-cccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEE
Confidence 111222110 112356899999 54 4555666666654221 012367888
Q ss_pred cCCCC-------CCcCHHHHhccccEEEecCCCHHH----HHHHHHHHhcC----CC---CCCChHhHHHHHHHcCCCCH
Q psy3808 255 ATNIP-------WVLDAAIRRRFEKRIYIALPELNA----RLFMFRHHLGN----TR---NTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 255 ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~----r~~il~~~l~~----~~---~~~~~~~~~~la~~~~g~~~ 316 (330)
||+.. ..+.+.|..||.. +.+..|...+ ...++++++.. .+ ..+++..+..|....---+.
T Consensus 279 ~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 357 (469)
T PRK10923 279 ATHQNLEQRVQEGKFREDLFHRLNV-IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 (469)
T ss_pred eCCCCHHHHHHcCCchHHHHHHhcc-eeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChH
Confidence 88654 2456777888843 4444444333 33455555432 22 23677888888888777778
Q ss_pred HHHHHHHhhccc
Q psy3808 317 ADISTLERNFKV 328 (330)
Q Consensus 317 ~di~~l~~~a~~ 328 (330)
++|++++++|+.
T Consensus 358 ~eL~~~i~~~~~ 369 (469)
T PRK10923 358 RQLENTCRWLTV 369 (469)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 236
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.90 E-value=6.4e-09 Score=92.83 Aligned_cols=109 Identities=20% Similarity=0.375 Sum_probs=65.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccCh---hHHHHHHHHHHHHhcCCeEEEEeC----Ccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGE---SEKLVKTLFELARAHRPSIIFIDE----RID 229 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~a~~~~~~ii~iDe----~~~ 229 (330)
.+++|+||||||||+|+.++|+++ .+..++.++..+++...... ........+.. .....+|+||| ...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCCCCC
Confidence 689999999999999999999988 45678888887775542110 00001111222 23456999999 223
Q ss_pred hhhHHHHHHHHhcCCCCCCcEEEEecCCCC-CC----cCHHHHhccc
Q psy3808 230 RGISNALFLLLSGVGNDMDGILVLGATNIP-WV----LDAAIRRRFE 271 (330)
Q Consensus 230 ~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~-~~----l~~~l~~Rf~ 271 (330)
......+..++...... ..-+|| |||.+ .. +++.+.+|+.
T Consensus 262 ~~~~~~Lf~iin~R~~~-~k~tIi-TSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 262 EFSKSELFNLINKRLLR-QKKMII-STNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred HHHHHHHHHHHHHHHHC-CCCEEE-ECCCCHHHHHHHHhHHHHHHHH
Confidence 34445666666654332 223444 66653 22 4556777663
No 237
>KOG2227|consensus
Probab=98.89 E-value=1.2e-07 Score=85.71 Aligned_cols=186 Identities=18% Similarity=0.234 Sum_probs=122.8
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---CCC-cEEEecccchhc---
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---NNS-TFFSVSSSDLVS--- 197 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---~~~-~~~~~~~~~~~~--- 197 (330)
..+.|.+.-...+.+++..++.. ....++++.|.||||||.+..-+...+ ... ..++++|..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 34899999999999988766532 223689999999999999888666554 112 336677754321
Q ss_pred -------cc----c-ChhHHHHHHHHH-HHHhc-CCeEEEEeCCcchhh---HHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 198 -------KW----L-GESEKLVKTLFE-LARAH-RPSIIFIDERIDRGI---SNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 198 -------~~----~-~~~~~~~~~~f~-~a~~~-~~~ii~iDe~~~~~~---~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
.+ . +.++......|. ...+. .+-|+++|| +|... ...+..++.+-.-...++++||-.|..+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDE-mD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDE-MDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEech-hhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 11 1 111222222332 22223 367899999 77544 3445555555444556789999999887
Q ss_pred CcCHHHHh---c---cccEEEecCCCHHHHHHHHHHHhcCCCCC-CChHhHHHHHHHcCCCCHHHHH
Q psy3808 261 VLDAAIRR---R---FEKRIYIALPELNARLFMFRHHLGNTRNT-ISDENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 261 ~l~~~l~~---R---f~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~~la~~~~g~~~~di~ 320 (330)
.-|..|.+ | -+..+.|++++.++..+|++..+...... .-+..+...|+...|-|| |+.
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 66665555 2 24569999999999999999888776543 233578889999999888 444
No 238
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.88 E-value=1e-08 Score=80.41 Aligned_cols=104 Identities=21% Similarity=0.378 Sum_probs=63.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE--RIDRGISN 234 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~ 234 (330)
..|+|+|++||||+++|++|+.... ..+|+.+++..+. ..+++. ..++.|||++ .++...+.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~---a~~gtL~l~~i~~L~~~~Q~ 87 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQ---AKGGTLYLKNIDRLSPEAQR 87 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHH---CTTSEEEEECGCCS-HHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHH---cCCCEEEECChHHCCHHHHH
Confidence 4699999999999999999998762 2356666665532 223333 3567999998 34455566
Q ss_pred HHHHHHhcCCCCCCcEEEEecCCCC--C-----CcCHHHHhcccc-EEEecC
Q psy3808 235 ALFLLLSGVGNDMDGILVLGATNIP--W-----VLDAAIRRRFEK-RIYIAL 278 (330)
Q Consensus 235 ~l~~~l~~~~~~~~~v~vi~ttn~~--~-----~l~~~l~~Rf~~-~i~~~~ 278 (330)
.+...+..... .++.+|++++.+ . .+++.|..|+.. .|.+|+
T Consensus 88 ~L~~~l~~~~~--~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 88 RLLDLLKRQER--SNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp HHHHHHHHCTT--TTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred HHHHHHHhcCC--CCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 66666665432 345555555433 2 356777777754 355554
No 239
>PRK06526 transposase; Provisional
Probab=98.87 E-value=5.6e-09 Score=90.07 Aligned_cols=95 Identities=21% Similarity=0.396 Sum_probs=57.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChh-HHHHHHHHHHHHhcCCeEEEEeCCcc-----h
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGES-EKLVKTLFELARAHRPSIIFIDERID-----R 230 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~a~~~~~~ii~iDe~~~-----~ 230 (330)
.+++|+||||||||+||.+++.++ .|..+...++.+++....... ...+...+. ....+.+|+||| ++ .
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~--~l~~~dlLIIDD-~g~~~~~~ 175 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELV--KLGRYPLLIVDE-VGYIPFEP 175 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHH--HhccCCEEEEcc-cccCCCCH
Confidence 579999999999999999999886 345566666665544321100 011111111 123467999999 44 4
Q ss_pred hhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 231 GISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 231 ~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
...+.+..++...... +. +|.|||.+
T Consensus 176 ~~~~~L~~li~~r~~~--~s-~IitSn~~ 201 (254)
T PRK06526 176 EAANLFFQLVSSRYER--AS-LIVTSNKP 201 (254)
T ss_pred HHHHHHHHHHHHHHhc--CC-EEEEcCCC
Confidence 4455666666653332 22 45577766
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.87 E-value=7.5e-09 Score=91.68 Aligned_cols=67 Identities=24% Similarity=0.426 Sum_probs=44.0
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChh-HHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGES-EKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
.++++|+||+|||||+|+.++|+++ .|.++..++..+++....... ...+...+... ....+|+|||
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDD 225 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDD 225 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEec
Confidence 4689999999999999999999998 355666667666544321110 00112222222 3456999999
No 241
>KOG1970|consensus
Probab=98.85 E-value=2.6e-07 Score=85.07 Aligned_cols=202 Identities=13% Similarity=0.090 Sum_probs=110.3
Q ss_pred cccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 112 EGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 112 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
...+..++.+.+.+++.-...-+.+++.++.. ......+.+.+-+||+||+||||||.++.++.++ |..++.-+
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~-----~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-g~~~~Ew~ 142 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQ-----VAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-GYQLIEWS 142 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHH-----HHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-Cceeeeec
Confidence 34556677888888988866666666666530 0011122333568999999999999999999999 67665533
Q ss_pred -c------cch------hc-cccChhHHHHHHHHHHH------------HhcCCeEEEEeCCcchhh----HHHHHHHHh
Q psy3808 192 -S------SDL------VS-KWLGESEKLVKTLFELA------------RAHRPSIIFIDERIDRGI----SNALFLLLS 241 (330)
Q Consensus 192 -~------~~~------~~-~~~~~~~~~~~~~f~~a------------~~~~~~ii~iDe~~~~~~----~~~l~~~l~ 241 (330)
+ ..+ .. .|....+. .......+ ....+.+|+||| +.... ...+...+.
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~~-fesFler~~kyg~l~~~g~~~~~~~~liLveD-LPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 143 NPINLKEPENLHNETSFLMFPYQSQLAV-FESFLLRATKYGSLQMSGDDLRTDKKLILVED-LPNQFYRDDSETFREVLR 220 (634)
T ss_pred CCccccccccccccchhcccchhhHHHH-HHHHHHHHHhhchhhhcccccccCceEEEeec-cchhhhhhhHHHHHHHHH
Confidence 1 111 00 11111110 01111111 113456899999 43221 112222222
Q ss_pred cCCC--CCCcEEEEecCCCCCCcCHHHH------h--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCC------hHhHH
Q psy3808 242 GVGN--DMDGILVLGATNIPWVLDAAIR------R--RFEKRIYIALPELNARLFMFRHHLGNTRNTIS------DENLK 305 (330)
Q Consensus 242 ~~~~--~~~~v~vi~ttn~~~~l~~~l~------~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~------~~~~~ 305 (330)
.+.. ..+-|++|+-+..++..++.-+ - |. ..|.|-+-...-....+.++|.......+ ...+.
T Consensus 221 ~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 221 LYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred HHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 1111 1123444444444444433211 1 55 34788777777777778887766654444 45677
Q ss_pred HHHHHcCCCCHHHHHHH
Q psy3808 306 ELAKRTEGYSGADISTL 322 (330)
Q Consensus 306 ~la~~~~g~~~~di~~l 322 (330)
.++..+.|.....|..|
T Consensus 300 ~i~~~s~GDIRsAInsL 316 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSL 316 (634)
T ss_pred HHHHhcCccHHHHHhHh
Confidence 78888887666666554
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.85 E-value=6.5e-09 Score=89.73 Aligned_cols=98 Identities=24% Similarity=0.441 Sum_probs=62.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChhHH-HH-HHHHHHHHhcCCeEEEEeC----Ccc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGESEK-LV-KTLFELARAHRPSIIFIDE----RID 229 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~f~~a~~~~~~ii~iDe----~~~ 229 (330)
..+++|+||||+|||+||-||++++ .|.+++.++..+++......... .. ..+... -....+|+||| ..+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~--l~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE--LKKVDLLIIDDIGYEPFS 182 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH--hhcCCEEEEecccCccCC
Confidence 3689999999999999999999998 45677888888876543221111 11 111111 13456999999 334
Q ss_pred hhhHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 230 RGISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 230 ~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
....+.+..++........ + |.|||.+.
T Consensus 183 ~~~~~~~~q~I~~r~~~~~--~-~~tsN~~~ 210 (254)
T COG1484 183 QEEADLLFQLISRRYESRS--L-IITSNLSF 210 (254)
T ss_pred HHHHHHHHHHHHHHHhhcc--c-eeecCCCh
Confidence 4455666666665444322 3 66888764
No 243
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.6e-07 Score=82.70 Aligned_cols=142 Identities=15% Similarity=0.017 Sum_probs=95.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCC----------c--EEEecccchhccccChhHHHHHHHHHHHHh-----cCCeE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNS----------T--FFSVSSSDLVSKWLGESEKLVKTLFELARA-----HRPSI 221 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~-----~~~~i 221 (330)
+.+||+|+.|.||+.++..++..+-+. | +..++.. +... .-..++.+.+.... ...-|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCceE
Confidence 578899999999999999999987211 1 1112100 1101 11233333333321 24569
Q ss_pred EEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCCh
Q psy3808 222 IFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISD 301 (330)
Q Consensus 222 i~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~ 301 (330)
++||+ .+.....+...++..++++++.+++|.+|+.+..+-+++++|+ ..+.|++|+..+....+... + .++
T Consensus 94 vII~~-~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~~l~~~----~--~~~ 165 (299)
T PRK07132 94 LIIKN-IEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILAKLLSK----N--KEK 165 (299)
T ss_pred EEEec-ccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHHHHHHc----C--CCh
Confidence 99999 7777666666777777777788888888888899999999999 66999999888877665432 2 355
Q ss_pred HhHHHHHHHcCC
Q psy3808 302 ENLKELAKRTEG 313 (330)
Q Consensus 302 ~~~~~la~~~~g 313 (330)
.....+|..++|
T Consensus 166 ~~a~~~a~~~~~ 177 (299)
T PRK07132 166 EYNWFYAYIFSN 177 (299)
T ss_pred hHHHHHHHHcCC
Confidence 555566666665
No 244
>KOG1514|consensus
Probab=98.83 E-value=1.7e-07 Score=88.57 Aligned_cols=165 Identities=17% Similarity=0.242 Sum_probs=107.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh---------CCCcEEEecccchhcc----------ccChh------HHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSVSSSDLVSK----------WLGES------EKLVKTLFEL 213 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~---------~~~~~~~~~~~~~~~~----------~~~~~------~~~~~~~f~~ 213 (330)
..++++|-||||||.+++.+..++ +...++.+++-.+.+. +.|+. -..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 369999999999999999999876 3345677777655331 11211 0111112221
Q ss_pred H-HhcCCeEEEEeCCcchh---hHHHHHHHHhcCCCCCCcEEEEecCCCCCCcC----HHHHhcccc-EEEecCCCHHHH
Q psy3808 214 A-RAHRPSIIFIDERIDRG---ISNALFLLLSGVGNDMDGILVLGATNIPWVLD----AAIRRRFEK-RIYIALPELNAR 284 (330)
Q Consensus 214 a-~~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~----~~l~~Rf~~-~i~~~~p~~~~r 284 (330)
. -...++||+||| +|.. .++.+..++++-.....+++||+-+|..+... ..+.+|.+. .+.|.+++..+.
T Consensus 503 ~k~~~~~~VvLiDE-lD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qL 581 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDE-LDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQL 581 (767)
T ss_pred CCCCCCCEEEEecc-HHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHH
Confidence 1 124678999999 7743 45788888888777777888888877654332 344456655 499999999999
Q ss_pred HHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH---HHHHHHHhhc
Q psy3808 285 LFMFRHHLGNTRNTISDENLKELAKRTEGYSG---ADISTLERNF 326 (330)
Q Consensus 285 ~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~---~di~~l~~~a 326 (330)
.+|+...+.... .+....+.-+|+.....|| ..+ .+|++|
T Consensus 582 q~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRral-dic~RA 624 (767)
T KOG1514|consen 582 QEIISARLKGLD-AFENKAIELVARKVAAVSGDARRAL-DICRRA 624 (767)
T ss_pred HHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHH-HHHHHH
Confidence 999999887763 3455556666665544444 333 445555
No 245
>PF13173 AAA_14: AAA domain
Probab=98.81 E-value=2.1e-08 Score=77.55 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=65.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC-CCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--hHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--ISNA 235 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--~~~~ 235 (330)
+.++|+||+|||||++++.++..+. ...++.+++.+.......... +...+.......+.+||||| ++.. ....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDE-iq~~~~~~~~ 79 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDE-IQYLPDWEDA 79 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEeh-hhhhccHHHH
Confidence 4689999999999999999998872 256777777665432111111 22222222222567999999 5532 3334
Q ss_pred HHHHHhcCCCCCCcEEEEecCCCCCC----cCHHHHhccccEEEecCCCHHH
Q psy3808 236 LFLLLSGVGNDMDGILVLGATNIPWV----LDAAIRRRFEKRIYIALPELNA 283 (330)
Q Consensus 236 l~~~l~~~~~~~~~v~vi~ttn~~~~----l~~~l~~Rf~~~i~~~~p~~~~ 283 (330)
+..+.+.. .++-+|.|++.... ....+..|+ ..+.+.+.+..+
T Consensus 80 lk~l~d~~----~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 80 LKFLVDNG----PNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred HHHHHHhc----cCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 44444432 23334434433222 223444466 357777777654
No 246
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.80 E-value=4.7e-07 Score=78.62 Aligned_cols=167 Identities=17% Similarity=0.236 Sum_probs=97.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--------CCcEEEecccch--------------hccc-c-ChhHHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSVSSSDL--------------VSKW-L-GESEKLVKTLFELA 214 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--------~~~~~~~~~~~~--------------~~~~-~-~~~~~~~~~~f~~a 214 (330)
.++||+|++|.|||++++.++..-+ ..|++.+.+..- ...+ . ......-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999997541 124544433211 0011 0 11122333444566
Q ss_pred HhcCCeEEEEeCCcchh------hHHHHHHHHhcCCCCCC-cEEEEecCCC--CCCcCHHHHhccccEEEecCCC-HHHH
Q psy3808 215 RAHRPSIIFIDERIDRG------ISNALFLLLSGVGNDMD-GILVLGATNI--PWVLDAAIRRRFEKRIYIALPE-LNAR 284 (330)
Q Consensus 215 ~~~~~~ii~iDe~~~~~------~~~~l~~~l~~~~~~~~-~v~vi~ttn~--~~~l~~~l~~Rf~~~i~~~~p~-~~~r 284 (330)
+..++-+|+||| ++.. .+..++..+..+.+... .++.+||-.. .-.-|+.+.+||.. +.+|.-. .++.
T Consensus 142 r~~~vrmLIIDE-~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef 219 (302)
T PF05621_consen 142 RRLGVRMLIIDE-FHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEF 219 (302)
T ss_pred HHcCCcEEEeec-hHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHH
Confidence 667888999999 6532 34456666666554432 3444444321 12457899999954 6666522 3334
Q ss_pred HHHHHHHhcCCC----CCCCh-HhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 285 LFMFRHHLGNTR----NTISD-ENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 285 ~~il~~~l~~~~----~~~~~-~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
..++..+-...+ ..+.+ .-...|-..|+|..| +|..++..|+.
T Consensus 220 ~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~ 267 (302)
T PF05621_consen 220 RRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAI 267 (302)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHH
Confidence 445555443332 22333 445788889999888 67777777654
No 247
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.79 E-value=1.5e-07 Score=88.98 Aligned_cols=188 Identities=19% Similarity=0.235 Sum_probs=113.8
Q ss_pred cccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccC
Q psy3808 124 WTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLG 201 (330)
Q Consensus 124 ~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~ 201 (330)
+..++|.......+.+.+.... .....++++|++||||+++|+++.... .+.+|+.++|..+...+.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~- 210 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL- 210 (457)
T ss_pred ccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH-
Confidence 4456776555544444432111 122469999999999999999998765 246899999987632211
Q ss_pred hhHHHHHHHHHH---------------HHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC--------CCCcEEEEecC
Q psy3808 202 ESEKLVKTLFEL---------------ARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN--------DMDGILVLGAT 256 (330)
Q Consensus 202 ~~~~~~~~~f~~---------------a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~--------~~~~v~vi~tt 256 (330)
-..+|.. ......++||||| .++...+..++..+..... ...++.+|+||
T Consensus 211 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t 285 (457)
T PRK11361 211 -----ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAAT 285 (457)
T ss_pred -----HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeC
Confidence 1111210 1112346999999 3345556666666654211 01247888888
Q ss_pred CCCC-------CcCHHHHhccccEEEecCCCHHHHH----HHHHHHhcCC----C---CCCChHhHHHHHHHcCCCCHHH
Q psy3808 257 NIPW-------VLDAAIRRRFEKRIYIALPELNARL----FMFRHHLGNT----R---NTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 257 n~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~~~----~---~~~~~~~~~~la~~~~g~~~~d 318 (330)
+.+. .+.+.+..|+.. +.+..|...+|. .+...++... + ..+++..+..|....-.-+..+
T Consensus 286 ~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~e 364 (457)
T PRK11361 286 NRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRE 364 (457)
T ss_pred CCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHH
Confidence 7642 355666667633 566666655554 2333333221 1 3467778888888776667789
Q ss_pred HHHHHhhccc
Q psy3808 319 ISTLERNFKV 328 (330)
Q Consensus 319 i~~l~~~a~~ 328 (330)
+++++++|++
T Consensus 365 L~~~~~~~~~ 374 (457)
T PRK11361 365 LSNVIERAVV 374 (457)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 248
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.78 E-value=3.6e-09 Score=92.25 Aligned_cols=127 Identities=20% Similarity=0.350 Sum_probs=73.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEE--EecccchhccccChhHHHHHHHHHHH----H-------hcCCeEEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFF--SVSSSDLVSKWLGESEKLVKTLFELA----R-------AHRPSIIFID 225 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~a----~-------~~~~~ii~iD 225 (330)
+++||+||+|||||++++.+...+....+. .++++... +...+..+.+.. + ..+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 579999999999999999988777444322 23332211 112222221111 0 1234699999
Q ss_pred CCcc-----h----hhHHHHHHHHhcC--CCC-------CCcEEEEecCCCCC---CcCHHHHhccccEEEecCCCHHHH
Q psy3808 226 ERID-----R----GISNALFLLLSGV--GND-------MDGILVLGATNIPW---VLDAAIRRRFEKRIYIALPELNAR 284 (330)
Q Consensus 226 e~~~-----~----~~~~~l~~~l~~~--~~~-------~~~v~vi~ttn~~~---~l~~~l~~Rf~~~i~~~~p~~~~r 284 (330)
| ++ . ...+.+.++++.- ... ..++.+|+|++++. .+++.+.|.| .++.++.|+.++.
T Consensus 108 D-lN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~~sl 185 (272)
T PF12775_consen 108 D-LNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSDESL 185 (272)
T ss_dssp T-TT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TCCHH
T ss_pred c-cCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCChHHH
Confidence 9 33 1 1223333344321 111 12477888887643 4778888888 6799999999999
Q ss_pred HHHHHHHhc
Q psy3808 285 LFMFRHHLG 293 (330)
Q Consensus 285 ~~il~~~l~ 293 (330)
..|+..++.
T Consensus 186 ~~If~~il~ 194 (272)
T PF12775_consen 186 NTIFSSILQ 194 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988877665
No 249
>PRK09183 transposase/IS protein; Provisional
Probab=98.77 E-value=2.1e-08 Score=86.96 Aligned_cols=97 Identities=26% Similarity=0.406 Sum_probs=58.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccCh-hHHHHHHHHHHHHhcCCeEEEEeC----Ccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGE-SEKLVKTLFELARAHRPSIIFIDE----RIDRG 231 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~a~~~~~~ii~iDe----~~~~~ 231 (330)
.+++|+||||||||+|+.+++... .|..+..++..++...+... ....+..++... ...+.+++||| ..+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~~~~ 181 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPFSQE 181 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCCChH
Confidence 579999999999999999998764 35566666666654332111 011223344332 24567999999 22334
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 232 ISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 232 ~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
..+.+..+++..... +. +|.|||.+
T Consensus 182 ~~~~lf~li~~r~~~--~s-~iiTsn~~ 206 (259)
T PRK09183 182 EANLFFQVIAKRYEK--GS-MILTSNLP 206 (259)
T ss_pred HHHHHHHHHHHHHhc--Cc-EEEecCCC
Confidence 444566666654332 22 44577765
No 250
>PRK06921 hypothetical protein; Provisional
Probab=98.75 E-value=2.6e-08 Score=86.63 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=60.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhC---CCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch----
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEAN---NSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR---- 230 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~---- 230 (330)
..+++|+||||+|||+|+.++++++. +..++.++..+++....... ........ ......+|+||| +..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~--~~~~~dlLiIDD-l~~~~~g 192 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLN--RMKKVEVLFIDD-LFKPVNG 192 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHH--HhcCCCEEEEec-cccccCC
Confidence 35899999999999999999999872 55667777665543211110 11111111 123457999999 622
Q ss_pred ------hhHHHHHHHHhcCCCCCCcEEEEecCCCC-CC---cCHHHHhc
Q psy3808 231 ------GISNALFLLLSGVGNDMDGILVLGATNIP-WV---LDAAIRRR 269 (330)
Q Consensus 231 ------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~-~~---l~~~l~~R 269 (330)
.....+..+++..... ..-+|| |||.+ .. +++.+.+|
T Consensus 193 ~e~~t~~~~~~lf~iin~R~~~-~k~tIi-tsn~~~~el~~~~~~l~sR 239 (266)
T PRK06921 193 KPRATEWQIEQMYSVLNYRYLN-HKPILI-SSELTIDELLDIDEALGSR 239 (266)
T ss_pred CccCCHHHHHHHHHHHHHHHHC-CCCEEE-ECCCCHHHHhhhhhHHHHH
Confidence 1123455565543322 223445 66653 32 24555554
No 251
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.73 E-value=2.8e-07 Score=87.22 Aligned_cols=187 Identities=19% Similarity=0.200 Sum_probs=114.2
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccCh
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGE 202 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~ 202 (330)
..++|.....+.+...+.... .....+++.|.+||||+++|+++.... .+.+|+.++|..+...+.
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~-- 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI-- 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH--
Confidence 457777666666655442211 112469999999999999999999875 346899999987633211
Q ss_pred hHHHHHHHHHH---------------HHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC--------CCCcEEEEecC
Q psy3808 203 SEKLVKTLFEL---------------ARAHRPSIIFIDERID---RGISNALFLLLSGVGN--------DMDGILVLGAT 256 (330)
Q Consensus 203 ~~~~~~~~f~~---------------a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~--------~~~~v~vi~tt 256 (330)
-..+|.. ......+.||||| ++ ...+..++.++..... ...++.+|++|
T Consensus 202 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e-i~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~ 276 (463)
T TIGR01818 202 ----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE-IGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAAT 276 (463)
T ss_pred ----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc-hhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeC
Confidence 1111110 1112357899999 54 4455566666653211 01246778787
Q ss_pred CCCC-------CcCHHHHhcccc-EEEecCCC--HHHHHHHHHHHhcC----CC---CCCChHhHHHHHHHcCCCCHHHH
Q psy3808 257 NIPW-------VLDAAIRRRFEK-RIYIALPE--LNARLFMFRHHLGN----TR---NTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 257 n~~~-------~l~~~l~~Rf~~-~i~~~~p~--~~~r~~il~~~l~~----~~---~~~~~~~~~~la~~~~g~~~~di 319 (330)
+... .+.+.|..|+.. .|.+|+.. .++...++++++.. .+ ..+++..+..|....---+.++|
T Consensus 277 ~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL 356 (463)
T TIGR01818 277 HQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQL 356 (463)
T ss_pred CCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHH
Confidence 6542 455677777753 46666654 44555555554432 22 34678888888887544456899
Q ss_pred HHHHhhccc
Q psy3808 320 STLERNFKV 328 (330)
Q Consensus 320 ~~l~~~a~~ 328 (330)
++++++|++
T Consensus 357 ~~~~~~~~~ 365 (463)
T TIGR01818 357 ENLCRWLTV 365 (463)
T ss_pred HHHHHHHHH
Confidence 999988764
No 252
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.71 E-value=7.9e-09 Score=84.43 Aligned_cols=96 Identities=24% Similarity=0.455 Sum_probs=54.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChh-HHHHHHHHHHHHhcCCeEEEEeC----Ccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGES-EKLVKTLFELARAHRPSIIFIDE----RIDRG 231 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~a~~~~~~ii~iDe----~~~~~ 231 (330)
.+++|+||||||||+||.++++++ .|.++..++..+++....... .......+... ....+|+||| ..+..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~~~~~~~ 125 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGYEPLSEW 125 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTSS---HH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEecccccceeeeccc
Confidence 589999999999999999999877 566778888877765422110 01111222222 2346999999 22233
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 232 ISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 232 ~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
....+..+++.-... +-.|| |||..
T Consensus 126 ~~~~l~~ii~~R~~~--~~tIi-TSN~~ 150 (178)
T PF01695_consen 126 EAELLFEIIDERYER--KPTII-TSNLS 150 (178)
T ss_dssp HHHCTHHHHHHHHHT---EEEE-EESS-
T ss_pred ccccchhhhhHhhcc--cCeEe-eCCCc
Confidence 344455555543322 23344 77753
No 253
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.68 E-value=7.6e-08 Score=87.08 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChh------HHHHHHHHHHHHhcCCeEEEEeCCcc
Q psy3808 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES------EKLVKTLFELARAHRPSIIFIDERID 229 (330)
Q Consensus 156 ~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~f~~a~~~~~~ii~iDe~~~ 229 (330)
.+++|++||||+|+|||+|.-.+...++...-..+...+++....... ..-+..+..... ....+|++|| +.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDE-F~ 137 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDE-FQ 137 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEee-ee
Confidence 456899999999999999999999988543333344434433211111 011222222222 2334999999 32
Q ss_pred ---hhhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 230 ---RGISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 230 ---~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
-.-...+..++..+.. .++++|+|||.+
T Consensus 138 V~DiaDAmil~rLf~~l~~--~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTDIADAMILKRLFEALFK--RGVVLVATSNRP 168 (362)
T ss_pred ccchhHHHHHHHHHHHHHH--CCCEEEecCCCC
Confidence 1112222233333332 578999999976
No 254
>PRK15115 response regulator GlrR; Provisional
Probab=98.67 E-value=7e-07 Score=84.06 Aligned_cols=162 Identities=20% Similarity=0.303 Sum_probs=102.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChhHHHHHHHHHHH---------------HhcCCeE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGESEKLVKTLFELA---------------RAHRPSI 221 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a---------------~~~~~~i 221 (330)
..++|+|++|||||++|+++.... .+.+|+.++|..+..... -..+|... .....++
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 369999999999999999999876 246899999987632211 11222211 1123468
Q ss_pred EEEeCCcc---hhhHHHHHHHHhcCCCC--------CCcEEEEecCCCC-------CCcCHHHHhccccEEEecCCCHHH
Q psy3808 222 IFIDERID---RGISNALFLLLSGVGND--------MDGILVLGATNIP-------WVLDAAIRRRFEKRIYIALPELNA 283 (330)
Q Consensus 222 i~iDe~~~---~~~~~~l~~~l~~~~~~--------~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~ 283 (330)
||||| ++ ...+..++..+...... ..++.+|+||+.+ ..+.+.+..|+. .+.+..|...+
T Consensus 232 l~l~~-i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~-~~~i~lPpLr~ 309 (444)
T PRK15115 232 LFLDE-IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLN-VVSLKIPALAE 309 (444)
T ss_pred EEEEc-cccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhc-eeeecCCChHh
Confidence 99999 55 45556666666542210 1247888888753 123344555553 35666676666
Q ss_pred HH----HHHHHHhcC----CC---CCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 284 RL----FMFRHHLGN----TR---NTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 284 r~----~il~~~l~~----~~---~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|. .+++.++.. .+ ..+++..+..|......-+.+++.+++++|+.
T Consensus 310 R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 310 RTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 63 244444432 12 23688889999988866677899999988764
No 255
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.67 E-value=2e-07 Score=72.14 Aligned_cols=97 Identities=24% Similarity=0.392 Sum_probs=54.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC-------CCcEEEecccchhc--c------------cc--ChhHHHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN-------NSTFFSVSSSDLVS--K------------WL--GESEKLVKTLFELAR 215 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~-------~~~~~~~~~~~~~~--~------------~~--~~~~~~~~~~f~~a~ 215 (330)
+.++++||||+|||++++.++..+. ..+++.+++....+ . .. .........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 5799999999999999999999873 45666666543321 0 01 112334444555555
Q ss_pred hcCCeEEEEeCCcchhhHHHHHHHHhcCCCC-CCcEEEEecC
Q psy3808 216 AHRPSIIFIDERIDRGISNALFLLLSGVGND-MDGILVLGAT 256 (330)
Q Consensus 216 ~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~-~~~v~vi~tt 256 (330)
.....+|+||| ++......++..+..+.+. .-.++++|+.
T Consensus 85 ~~~~~~lviDe-~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDE-ADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEET-THHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred hcCCeEEEEeC-hHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 55556999999 7764134444444333332 2234445443
No 256
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.67 E-value=4.9e-07 Score=87.37 Aligned_cols=53 Identities=40% Similarity=0.533 Sum_probs=45.6
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~ 183 (330)
...|+..|++++|++++++.|...+.. .++++|+||||||||+++++++..++
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 566788999999999999999887732 14799999999999999999999873
No 257
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.61 E-value=5.2e-07 Score=79.78 Aligned_cols=152 Identities=21% Similarity=0.207 Sum_probs=79.8
Q ss_pred CcceEEECCCCCchHHHHHHHHHH--hCCC--cEEEecccchhc-------------cc------cChhHHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATE--ANNS--TFFSVSSSDLVS-------------KW------LGESEKLVKTLFELA 214 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~--~~~~--~~~~~~~~~~~~-------------~~------~~~~~~~~~~~f~~a 214 (330)
.+-+.|+|++|+|||+||..+++. .... .++.++.+.-.. .. ..........+.+.
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~- 97 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL- 97 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH-
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh-
Confidence 357999999999999999999987 3111 123333321100 00 11123333444433
Q ss_pred HhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC
Q psy3808 215 RAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN 294 (330)
Q Consensus 215 ~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~ 294 (330)
....+++|++|+ ++... .+..+...+.....+..||.||.... +...+... ...+.++..+.++..++|......
T Consensus 98 L~~~~~LlVlDd-v~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 98 LKDKRCLLVLDD-VWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGT-DKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp HCCTSEEEEEEE-E-SHH--HH-------HCHHSS-EEEEEESCGG-GGTTHHSC-EEEEECSS--HHHHHHHHHHHHTS
T ss_pred hccccceeeeee-ecccc--cccccccccccccccccccccccccc-cccccccc-cccccccccccccccccccccccc
Confidence 334589999999 65443 22111111111112345555665432 22122111 356899999999999999988765
Q ss_pred CC---CCCChHhHHHHHHHcCCCC
Q psy3808 295 TR---NTISDENLKELAKRTEGYS 315 (330)
Q Consensus 295 ~~---~~~~~~~~~~la~~~~g~~ 315 (330)
.. ....+.....+++.++|..
T Consensus 173 ~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 173 KESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp HS----TTSCTHHHHHHHHTTT-H
T ss_pred cccccccccccccccccccccccc
Confidence 54 1112345678888888754
No 258
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.56 E-value=1.9e-06 Score=81.04 Aligned_cols=162 Identities=18% Similarity=0.253 Sum_probs=99.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChhHHHHHHHHHH---------------HHhcCCeE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGESEKLVKTLFEL---------------ARAHRPSI 221 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~---------------a~~~~~~i 221 (330)
..++++|.+||||+++|+++.... .+.+|+.++|..+...+. -..+|.. .....+++
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 579999999999999999998765 346899999986632211 1112211 11234679
Q ss_pred EEEeCCcch---hhHHHHHHHHhcCCCC--------CCcEEEEecCCCCC-------CcCHHHHhccccEEEecCCCHHH
Q psy3808 222 IFIDERIDR---GISNALFLLLSGVGND--------MDGILVLGATNIPW-------VLDAAIRRRFEKRIYIALPELNA 283 (330)
Q Consensus 222 i~iDe~~~~---~~~~~l~~~l~~~~~~--------~~~v~vi~ttn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~ 283 (330)
||||| ++. ..+..++..+...... ..++.+|++|+.+. .+.+.|..|+. .+.+..|...+
T Consensus 237 l~lde-i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~-~~~i~~ppLre 314 (441)
T PRK10365 237 LFLDE-IGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN-VVAIEVPSLRQ 314 (441)
T ss_pred EEEec-cccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhh
Confidence 99999 554 4455555555432110 11356777776542 34455555663 35566666554
Q ss_pred H----HHHHHHHhcC----CC---CCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 284 R----LFMFRHHLGN----TR---NTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 284 r----~~il~~~l~~----~~---~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
| ..+++.++.. .+ ..+++..+..|....-.-+.+++.++++.|..
T Consensus 315 R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 315 RREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4 3444554432 11 23677888888887755567889988888764
No 259
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.55 E-value=5.7e-08 Score=87.35 Aligned_cols=157 Identities=25% Similarity=0.245 Sum_probs=80.7
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCC--CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc-----h---
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGK--RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD-----L--- 195 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~-----~--- 195 (330)
.|.|.+.+|..+.-.+.... ......+ ....-++||.|.||+|||.|.+.++...+ ..+ .+++.. +
T Consensus 25 ~i~g~~~iK~aill~L~~~~--~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p-r~v-~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGV--EKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP-RSV-YTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT----SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S-SEE-EEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHHHHHHhcc--ccccccccccccccceeeccchhhhHHHHHHHHHhhCC-ceE-EECCCCcccCCccce
Confidence 47898888777653332111 1110100 11223799999999999999998877653 222 222221 1
Q ss_pred ------hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh---hHHHHHHHHhcCCC--C--------CCcEEEEecC
Q psy3808 196 ------VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG---ISNALFLLLSGVGN--D--------MDGILVLGAT 256 (330)
Q Consensus 196 ------~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~--~--------~~~v~vi~tt 256 (330)
.+.|.-+... + .....+|++||| ++.. ....+...|+.-.- . ..++-|++++
T Consensus 101 ~~~d~~~~~~~leaGa-----l---vlad~GiccIDe-~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~ 171 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGA-----L---VLADGGICCIDE-FDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAA 171 (331)
T ss_dssp ECCCGGTSSECEEE-H-----H---HHCTTSEEEECT-TTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE
T ss_pred eccccccceeEEeCCc-----h---hcccCceeeecc-cccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHH
Confidence 1112111111 1 113447999999 6644 45556666654211 0 1246788898
Q ss_pred CCCC-------------CcCHHHHhccccEEEe-cCCCHHHHHHHHHHHhcCC
Q psy3808 257 NIPW-------------VLDAAIRRRFEKRIYI-ALPELNARLFMFRHHLGNT 295 (330)
Q Consensus 257 n~~~-------------~l~~~l~~Rf~~~i~~-~~p~~~~r~~il~~~l~~~ 295 (330)
|+.+ .+++.+++|||.++.+ ..|+.+.-..+.++.+..+
T Consensus 172 NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 172 NPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp --TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 8765 3678999999988665 6677666666666666554
No 260
>PF05729 NACHT: NACHT domain
Probab=98.51 E-value=1.8e-06 Score=69.43 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=68.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhC-----C---CcEEEecccchhcccc------------ChhHHHHHH-HHHHHHhcC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEAN-----N---STFFSVSSSDLVSKWL------------GESEKLVKT-LFELARAHR 218 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~-----~---~~~~~~~~~~~~~~~~------------~~~~~~~~~-~f~~a~~~~ 218 (330)
-++|+|+||+|||++++.++..+. . ..++.+.+.+....-. ......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998771 1 1122333333221100 000111111 112333456
Q ss_pred CeEEEEeCCcchhhH-----------HHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccc--cEEEecCCCHHHHH
Q psy3808 219 PSIIFIDERIDRGIS-----------NALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFE--KRIYIALPELNARL 285 (330)
Q Consensus 219 ~~ii~iDe~~~~~~~-----------~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~--~~i~~~~p~~~~r~ 285 (330)
..+|+||. +|+... ..+..++..-. ..++-+|.|+++ ..... +.+++. ..+.+++.+.+++.
T Consensus 82 ~~llilDg-lDE~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDG-LDELEEQDQSQERQRLLDLLSQLLPQAL--PPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEec-hHhcccchhhhHHHHHHHHHHHHhhhcc--CCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCHHHHH
Confidence 67888988 553332 12333333311 233444434432 22211 334332 35888999999999
Q ss_pred HHHHHHhcC
Q psy3808 286 FMFRHHLGN 294 (330)
Q Consensus 286 ~il~~~l~~ 294 (330)
.+++.++..
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999988754
No 261
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.50 E-value=7.4e-06 Score=85.79 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=97.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE---EEecccch
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF---FSVSSSDL 195 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~ 195 (330)
.+...+++++|.++..+.+...+... ....+-+.|+||+|+||||||+++++.+. ..| +.++...+
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~-~~F~g~vfv~~~~v 246 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLS-RQFQSSVFIDRAFI 246 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHh-hcCCeEEEeecccc
Confidence 35567889999999999998876321 11235699999999999999999988772 221 11111000
Q ss_pred ---hcccc-------C----hhHHHHHH-------------HHHHHHhcCCeEEEEeCCcchhhH-HHHHHHHhcCCCCC
Q psy3808 196 ---VSKWL-------G----ESEKLVKT-------------LFELARAHRPSIIFIDERIDRGIS-NALFLLLSGVGNDM 247 (330)
Q Consensus 196 ---~~~~~-------~----~~~~~~~~-------------~f~~a~~~~~~ii~iDe~~~~~~~-~~l~~~l~~~~~~~ 247 (330)
...+. . .....+.. ........++.+|++|+ .+.... +.+....... .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDd-v~~~~~l~~L~~~~~~~-~-- 322 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDD-LDDQDVLDALAGQTQWF-G-- 322 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeC-CCCHHHHHHHHhhCccC-C--
Confidence 00000 0 00001111 11122235667899999 664332 3332222221 1
Q ss_pred CcEEEEecCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCCh--HhHHHHHHHcCCCC
Q psy3808 248 DGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISD--ENLKELAKRTEGYS 315 (330)
Q Consensus 248 ~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~--~~~~~la~~~~g~~ 315 (330)
.+..||.||.. ..+.+ ..+.++.++.|+.++..++|..++.......++ .....+++...|..
T Consensus 323 ~GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 323 SGSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred CCcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 23334445543 33333 356778999999999999998876544322111 12344666667654
No 262
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.46 E-value=8.8e-07 Score=66.09 Aligned_cols=22 Identities=55% Similarity=0.977 Sum_probs=20.6
Q ss_pred eEEECCCCCchHHHHHHHHHHh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~ 182 (330)
|+|+||||+|||++|+.|+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999887
No 263
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.46 E-value=1.4e-05 Score=67.23 Aligned_cols=166 Identities=20% Similarity=0.287 Sum_probs=97.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcE--EEeccc-----chhcccc----Ch--------hHHHHHHHHHHHHh-cCC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTF--FSVSSS-----DLVSKWL----GE--------SEKLVKTLFELARA-HRP 219 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~--~~~~~~-----~~~~~~~----~~--------~~~~~~~~f~~a~~-~~~ 219 (330)
-+.++|+-|||||++++++...+++... +.++.. .+...+. .. .+..-+.+.....+ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999988877743322 222221 1111111 10 11222233333333 456
Q ss_pred eEEEEeCCcchhhH---HHHHHHHhcCCCCCC--cEEEEecCCCCCCcC----HHHHhccccEEEecCCCHHHHHHHHHH
Q psy3808 220 SIIFIDERIDRGIS---NALFLLLSGVGNDMD--GILVLGATNIPWVLD----AAIRRRFEKRIYIALPELNARLFMFRH 290 (330)
Q Consensus 220 ~ii~iDe~~~~~~~---~~l~~~l~~~~~~~~--~v~vi~ttn~~~~l~----~~l~~Rf~~~i~~~~p~~~~r~~il~~ 290 (330)
.++++|| .+.... ..+..+........+ ++++||-...-..+- ..+..|+...+.+++.+.++....+++
T Consensus 133 v~l~vdE-ah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~ 211 (269)
T COG3267 133 VVLMVDE-AHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRH 211 (269)
T ss_pred eEEeehh-HhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHH
Confidence 8999999 543332 233333332222223 356665432211111 234448877789999999988888888
Q ss_pred HhcCCCC---CCChHhHHHHHHHcCCCCHHHHHHHHhhcc
Q psy3808 291 HLGNTRN---TISDENLKELAKRTEGYSGADISTLERNFK 327 (330)
Q Consensus 291 ~l~~~~~---~~~~~~~~~la~~~~g~~~~di~~l~~~a~ 327 (330)
.++..+. .+++..+..++..++|| +.-|+++|..|.
T Consensus 212 ~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al 250 (269)
T COG3267 212 RLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLAL 250 (269)
T ss_pred HHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHH
Confidence 8876643 24667788899999995 557999988775
No 264
>KOG1968|consensus
Probab=98.44 E-value=1.1e-06 Score=87.06 Aligned_cols=200 Identities=19% Similarity=0.116 Sum_probs=126.8
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCC-cccccCCCCC--Cc-ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKF-PQLFTGKRVP--WK-GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~-~~~~~~~~~~--~~-~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.+..++.+....++.|.......+..++.-.-.. +..|.....- .. .++++||||+|||+.++.+|.++ +..++.
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~-g~~v~E 387 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL-GFKVVE 387 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-ccceee
Confidence 4556677777788888887777777777543211 1122222111 12 36999999999999999999999 788999
Q ss_pred ecccchhccccChh-------HHHHHHHH---HH--HHhcCCeEEEEeCCcc------hhhHHHHHHHHhcCCCCCCcEE
Q psy3808 190 VSSSDLVSKWLGES-------EKLVKTLF---EL--ARAHRPSIIFIDERID------RGISNALFLLLSGVGNDMDGIL 251 (330)
Q Consensus 190 ~~~~~~~~~~~~~~-------~~~~~~~f---~~--a~~~~~~ii~iDe~~~------~~~~~~l~~~l~~~~~~~~~v~ 251 (330)
.+++...++..... ...+...| .. .......||++|| .| ++....+..++.. ...-
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~de-vD~~~~~dRg~v~~l~~l~~k-----s~~P 461 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDE-VDGMFGEDRGGVSKLSSLCKK-----SSRP 461 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEec-cccccchhhhhHHHHHHHHHh-----ccCC
Confidence 99887655433211 11122222 00 1112223888998 33 3444455555542 2233
Q ss_pred EEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHH
Q psy3808 252 VLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 252 vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~ 320 (330)
+|+++|.-.........|....++|+.|+...+..-+..++...+..+.+..+..+...+.|....-|.
T Consensus 462 iv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~ 530 (871)
T KOG1968|consen 462 LVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIM 530 (871)
T ss_pred eEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHH
Confidence 455665544444434445557799999999999988888888888888999999999988654444443
No 265
>PRK07261 topology modulation protein; Provisional
Probab=98.39 E-value=2.9e-06 Score=68.98 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=27.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
.|+++|+||+||||+|+.++..+ +.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCC
Confidence 48999999999999999999988 677776554
No 266
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.39 E-value=3.4e-06 Score=80.99 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=80.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccchhccccChh--HHHHH---HHHH---HHHhcCCeEEEEeC--C
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSDLVSKWLGES--EKLVK---TLFE---LARAHRPSIIFIDE--R 227 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~---~~f~---~a~~~~~~ii~iDe--~ 227 (330)
.||+|.|++|+|||+++++++..++. .||+.+..+-.....+|.. +..+. ..++ .+. ...+|||+|| .
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~-Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAE-ADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceee-ccCCEEEecCccc
Confidence 58999999999999999999999843 4777665544333334432 11110 0010 111 1236999999 4
Q ss_pred cchhhHHHHHHHHhcCCC----------CCCcEEEEecCCCC---CCcCHHHHhccccEEEecCCCHHH
Q psy3808 228 IDRGISNALFLLLSGVGN----------DMDGILVLGATNIP---WVLDAAIRRRFEKRIYIALPELNA 283 (330)
Q Consensus 228 ~~~~~~~~l~~~l~~~~~----------~~~~v~vi~ttn~~---~~l~~~l~~Rf~~~i~~~~p~~~~ 283 (330)
++..+.+.|+..++.-.. ...++++|++-|.. ..+.++++.||+..+.++.|+..+
T Consensus 105 ~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 105 LEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred CCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 556666777777664321 12457888874432 358899999999999999887654
No 267
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.38 E-value=9e-06 Score=71.46 Aligned_cols=194 Identities=16% Similarity=0.220 Sum_probs=113.4
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVS 197 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~ 197 (330)
+...|+.+++.....+.+.+..... . .-...+||.|.+||||-.+|++..... ...||+-++|..+..
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~-------A---mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKL-------A---MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHh-------h---ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 4567888888666555554333110 0 111359999999999999999988766 456999999977643
Q ss_pred cc-----cChh--HHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCCCC--------CcEEEEecCCCCC
Q psy3808 198 KW-----LGES--EKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGNDM--------DGILVLGATNIPW 260 (330)
Q Consensus 198 ~~-----~~~~--~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~~~--------~~v~vi~ttn~~~ 260 (330)
.. .|.. ...-..+|+.+.. +.+|+|+ -+....+..++.++.+..-+. -.|.||+||..+-
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL 345 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL 345 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH
Confidence 21 1111 1122355665543 6889998 345666777888876532211 2488999986541
Q ss_pred -------CcCHHHHhccccEEEecCCCHHHHH--------HHHHHHhcCCCCC---CChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 261 -------VLDAAIRRRFEKRIYIALPELNARL--------FMFRHHLGNTRNT---ISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 261 -------~l~~~l~~Rf~~~i~~~~p~~~~r~--------~il~~~l~~~~~~---~~~~~~~~la~~~~g~~~~di~~l 322 (330)
.+-..+.-|. .++.+..|...+|. ..++.++.+.+.. ++..-+..|.+.-.--+.+++.+.
T Consensus 346 ~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~ 424 (511)
T COG3283 346 VELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNA 424 (511)
T ss_pred HHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHH
Confidence 2334455576 34555555544442 2234445554443 344445555554333345677777
Q ss_pred Hhhcc
Q psy3808 323 ERNFK 327 (330)
Q Consensus 323 ~~~a~ 327 (330)
+=+|+
T Consensus 425 iyRA~ 429 (511)
T COG3283 425 IYRAL 429 (511)
T ss_pred HHHHH
Confidence 66554
No 268
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.38 E-value=3.5e-07 Score=88.01 Aligned_cols=160 Identities=24% Similarity=0.205 Sum_probs=88.3
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCC--CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChh
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRV--PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES 203 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 203 (330)
.+-|.+++|+.+.-.+. -+.......+.. .--++||.|.||+|||.|.+.+++.++...+.+-..+.- .|-+
T Consensus 287 sIyG~e~VKkAilLqLf--gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLT 360 (682)
T COG1241 287 SIYGHEDVKKAILLQLF--GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLT 360 (682)
T ss_pred cccCcHHHHHHHHHHhc--CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCce
Confidence 47789999888874442 222222222211 113699999999999999999999884333322222111 1111
Q ss_pred HHHHHHHH--H------HHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCC--CC--------CCcEEEEecCCCCC--
Q psy3808 204 EKLVKTLF--E------LARAHRPSIIFIDERIDR---GISNALFLLLSGVG--ND--------MDGILVLGATNIPW-- 260 (330)
Q Consensus 204 ~~~~~~~f--~------~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~--~~--------~~~v~vi~ttn~~~-- 260 (330)
...++.-. + ......++|++||| +|+ ....++...|..-. -. +.++-|++|+|+.+
T Consensus 361 Aav~rd~~tge~~LeaGALVlAD~Gv~cIDE-fdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gr 439 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVLADGGVCCIDE-FDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGR 439 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEEecCCEEEEEe-ccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCc
Confidence 00000000 0 01113567999999 664 33444444444211 01 13456788888875
Q ss_pred -----------CcCHHHHhccccEEEe-cCCCHHHHHHHHHHHh
Q psy3808 261 -----------VLDAAIRRRFEKRIYI-ALPELNARLFMFRHHL 292 (330)
Q Consensus 261 -----------~l~~~l~~Rf~~~i~~-~~p~~~~r~~il~~~l 292 (330)
+++++|++|||..+.+ ..|+.+.-..+..+.+
T Consensus 440 yd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 440 YDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred CCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHH
Confidence 3678999999987555 4466654444444433
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.36 E-value=6.1e-06 Score=66.09 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=25.2
Q ss_pred eEEECCCCCchHHHHHHHHHHhC--CCcEEEecc
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSS 192 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~--~~~~~~~~~ 192 (330)
++|+||||+|||+++..++.... +.+++.++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 68999999999999999998872 345555544
No 270
>KOG2170|consensus
Probab=98.34 E-value=3.2e-05 Score=66.56 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=105.7
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----CCcEEEe--cccchhc-cc
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----NSTFFSV--SSSDLVS-KW 199 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----~~~~~~~--~~~~~~~-~~ 199 (330)
+.|+.-+++.+...+...+..+ ....|--+-|||+|||||.++++.||..+- ..+++.. ....+.. ++
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~-----~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ 158 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP-----NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASK 158 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC-----CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHH
Confidence 7788888888877775444322 111223477889999999999999999771 1122111 0011100 00
Q ss_pred cCh-hHHHHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCC----CCCCcEEEEecCCCCCC----------
Q psy3808 200 LGE-SEKLVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVG----NDMDGILVLGATNIPWV---------- 261 (330)
Q Consensus 200 ~~~-~~~~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~----~~~~~v~vi~ttn~~~~---------- 261 (330)
+.. ..+.-..+...+...+.++.++|| +|+ .+.+.+.-+++... .+..+.++|.-+|.-..
T Consensus 159 ie~Yk~eL~~~v~~~v~~C~rslFIFDE-~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170|consen 159 IEDYKEELKNRVRGTVQACQRSLFIFDE-VDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEech-hhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHH
Confidence 100 123334555666667778999999 654 44555555565321 12235566666653221
Q ss_pred -------------cCHHHH-----------------h--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHH
Q psy3808 262 -------------LDAAIR-----------------R--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAK 309 (330)
Q Consensus 262 -------------l~~~l~-----------------~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~ 309 (330)
+.+++. + +.+..|.|.+.++.....-++..+.+.+...+++-++.++.
T Consensus 238 ~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~erva~ 317 (344)
T KOG2170|consen 238 RNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVERVAN 317 (344)
T ss_pred HcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 111111 1 34555777788888877888888888886666667777877
Q ss_pred HcCCC
Q psy3808 310 RTEGY 314 (330)
Q Consensus 310 ~~~g~ 314 (330)
...=|
T Consensus 318 ~l~ff 322 (344)
T KOG2170|consen 318 SLSFF 322 (344)
T ss_pred hhccc
Confidence 66533
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.34 E-value=6.2e-07 Score=84.18 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=49.1
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
.-|+|+.|++++++.+.+.+..... +.....+-++|.||||+|||+||+.|+..+...+++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4577999999999999887733221 1122335799999999999999999999886667776543
No 272
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=3.7e-06 Score=73.97 Aligned_cols=103 Identities=18% Similarity=0.302 Sum_probs=58.3
Q ss_pred cccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc-------ccChhHHHHHHHHHHHHhcCCeEE
Q psy3808 150 LFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK-------WLGESEKLVKTLFELARAHRPSII 222 (330)
Q Consensus 150 ~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~f~~a~~~~~~ii 222 (330)
+|.....+++|++||||-|+|||+|.-.+...+++..-..+....++.. ..|++ .-+..+..... ....||
T Consensus 57 lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vL 134 (367)
T COG1485 57 LFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVL 134 (367)
T ss_pred ccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEE
Confidence 3344445679999999999999999999999885433233333333321 11222 11111111111 223599
Q ss_pred EEeC-----CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 223 FIDE-----RIDRGISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 223 ~iDe-----~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
+||| ..|..+.. .++..+.. .+|++++|||.+
T Consensus 135 CfDEF~VtDI~DAMiL~---rL~~~Lf~--~GV~lvaTSN~~ 171 (367)
T COG1485 135 CFDEFEVTDIADAMILG---RLLEALFA--RGVVLVATSNTA 171 (367)
T ss_pred EeeeeeecChHHHHHHH---HHHHHHHH--CCcEEEEeCCCC
Confidence 9999 11223333 33333333 479999999875
No 273
>KOG0480|consensus
Probab=98.33 E-value=1.8e-06 Score=80.84 Aligned_cols=166 Identities=21% Similarity=0.208 Sum_probs=96.1
Q ss_pred cccccchHHHHHHHHHHhhcccCCcccccCCCCCCc---ceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc-----ch
Q psy3808 124 WTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWK---GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS-----DL 195 (330)
Q Consensus 124 ~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~-----~~ 195 (330)
|..|-|.+.+|.-|.-.+.-.. .. ....+.+.| +|++.|.||+|||-+.++.+..++ ..++ ++.. .+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv--~K-~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP-R~vY-tsGkaSSaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGV--HK-SAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP-RSVY-TSGKASSAAGL 418 (764)
T ss_pred CccccchHHHHhhHHHHHhCCc--cc-cCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC-cceE-ecCcccccccc
Confidence 4568899999998875543221 11 122344444 599999999999999999999884 3333 2221 11
Q ss_pred hccccCh--hHHHHHHHHHHHHhcCCeEEEEeCCcchhhH---HHHHHHHhcCCC----------CCCcEEEEecCCCCC
Q psy3808 196 VSKWLGE--SEKLVKTLFELARAHRPSIIFIDERIDRGIS---NALFLLLSGVGN----------DMDGILVLGATNIPW 260 (330)
Q Consensus 196 ~~~~~~~--~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~---~~l~~~l~~~~~----------~~~~v~vi~ttn~~~ 260 (330)
....+.. +....-.. ....-..-+|.+||| +|+... .++...|.+-.- -+.+.-||+|+|+..
T Consensus 419 TaaVvkD~esgdf~iEA-GALmLADnGICCIDE-FDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~ 496 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEA-GALMLADNGICCIDE-FDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVG 496 (764)
T ss_pred eEEEEecCCCCceeeec-CcEEEccCceEEech-hcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcC
Confidence 1000000 00000000 000112346899999 665544 344444432110 112456788888753
Q ss_pred -------------CcCHHHHhccccE-EEecCCCHHHHHHHHHHHhcCCC
Q psy3808 261 -------------VLDAAIRRRFEKR-IYIALPELNARLFMFRHHLGNTR 296 (330)
Q Consensus 261 -------------~l~~~l~~Rf~~~-i~~~~p~~~~r~~il~~~l~~~~ 296 (330)
.+++++++||+.. |.++.|+...-..|-++.+..+.
T Consensus 497 GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~ 546 (764)
T KOG0480|consen 497 GHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHR 546 (764)
T ss_pred CccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhc
Confidence 3678999999986 56688888888887777776543
No 274
>KOG0478|consensus
Probab=98.33 E-value=3.2e-06 Score=79.79 Aligned_cols=161 Identities=20% Similarity=0.166 Sum_probs=89.8
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCC--CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc--hhc--cc
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKR--VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD--LVS--KW 199 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~--~~~--~~ 199 (330)
.|.|++++|+.+.-.+. -+....+...+ ...-+|||+|.||||||.+.+.+++.++ ...+ .+... -.+ -|
T Consensus 430 sIye~edvKkglLLqLf--GGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p-Rg~y-TSGkGsSavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLF--GGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP-RGVY-TSGKGSSAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHh--cCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC-ccee-ecCCccchhcceee
Confidence 47789999998874442 23333333322 1123699999999999999999999873 3222 22210 000 00
Q ss_pred cC---hhHHHHHHHHHHHHhcCCeEEEEeCCcchh---hHHHHHHHHhcC---------C-CCCCcEEEEecCCCCC---
Q psy3808 200 LG---ESEKLVKTLFELARAHRPSIIFIDERIDRG---ISNALFLLLSGV---------G-NDMDGILVLGATNIPW--- 260 (330)
Q Consensus 200 ~~---~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~---~~~~l~~~l~~~---------~-~~~~~v~vi~ttn~~~--- 260 (330)
+. ++.+.+-.- ........+|.+||| +|+. ....|...|+.- . .-+.+.-||++.|+..
T Consensus 506 Vtrd~dtkqlVLes-GALVLSD~GiCCIDE-FDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~sky 583 (804)
T KOG0478|consen 506 VTKDPDTRQLVLES-GALVLSDNGICCIDE-FDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKY 583 (804)
T ss_pred EEecCccceeeeec-CcEEEcCCceEEchh-hhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccC
Confidence 00 011100000 001113457899999 6654 444555555431 1 1123567888888542
Q ss_pred ----------CcCHHHHhccccE-EEecCCCHHHHHHHHHHHh
Q psy3808 261 ----------VLDAAIRRRFEKR-IYIALPELNARLFMFRHHL 292 (330)
Q Consensus 261 ----------~l~~~l~~Rf~~~-i~~~~p~~~~r~~il~~~l 292 (330)
.++|.|++||+.+ +-++.||...-+.|-.+.+
T Consensus 584 np~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 584 NPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred CCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 3789999999987 4457777775555544443
No 275
>PHA02774 E1; Provisional
Probab=98.33 E-value=5.3e-06 Score=78.09 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=27.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
+.++|+||||||||++|.+|++.+.|..+..++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 5799999999999999999999995554444553
No 276
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.7e-05 Score=66.59 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=94.5
Q ss_pred cceEEECCCC-CchHHHHHHHHHHhCC--------CcEEEecccchh---ccccChhHHHHHHHHHHH----HhcCCeEE
Q psy3808 159 KGILLFGPPG-TGKSYLAKAVATEANN--------STFFSVSSSDLV---SKWLGESEKLVKTLFELA----RAHRPSII 222 (330)
Q Consensus 159 ~~ill~GppG-tGKT~la~~la~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~a----~~~~~~ii 222 (330)
+..||.|..+ +||..++..++..+.+ ..++.+.+..-. +... .-..++.+.... .....-|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence 6799999998 9999999888887622 233434332110 0111 122334433332 33455699
Q ss_pred EEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC
Q psy3808 223 FIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT 295 (330)
Q Consensus 223 ~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~ 295 (330)
+|++ .+.....+...++.-++++..++++|..|..+..+.|.++||+ ..+.++.|+...-.+++..++...
T Consensus 94 II~~-ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~~~p~ 164 (263)
T PRK06581 94 IIYS-AELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELYSQFIQPI 164 (263)
T ss_pred EEec-hHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHHHHhcccc
Confidence 9999 8888888888888888888888999888989999999999999 668999999988887777665443
No 277
>PHA00729 NTP-binding motif containing protein
Probab=98.31 E-value=6.4e-06 Score=69.09 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=22.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.+++|+|+||||||+||.+++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 278
>KOG2228|consensus
Probab=98.27 E-value=5.2e-06 Score=72.41 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=90.9
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHH---HhCCCcEEEe--cccchh----
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVAT---EANNSTFFSV--SSSDLV---- 196 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~---~~~~~~~~~~--~~~~~~---- 196 (330)
.+.|..+-.+.+.+++...+-. + ..+++++.||.|+|||++...... +. +..|+.+ ++.-..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~-------g-EsnsviiigprgsgkT~li~~~Ls~~q~~-~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH-------G-ESNSVIIIGPRGSGKTILIDTRLSDIQEN-GENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh-------c-CCCceEEEccCCCCceEeeHHHHhhHHhc-CCeEEEEEECccchhhHHH
Confidence 4677776666666665322111 1 125899999999999987654443 33 4455443 332111
Q ss_pred ---------------ccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcc----hhhHHHHHHHHhcCCCCCCcEEEE
Q psy3808 197 ---------------SKWLGESEKLVKTLFELARA----HRPSIIFIDERID----RGISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 197 ---------------~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~----~~~~~~l~~~l~~~~~~~~~v~vi 253 (330)
.+..|.....+..+...... .+..||||+|.+| ...+..+..+++.......++.||
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Picii 175 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICII 175 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEE
Confidence 01122222233333332222 1223777765244 344456667777665555678888
Q ss_pred ecCCCCC---CcCHHHHhccccE-EEecC-CCHHHHHHHHHHHh
Q psy3808 254 GATNIPW---VLDAAIRRRFEKR-IYIAL-PELNARLFMFRHHL 292 (330)
Q Consensus 254 ~ttn~~~---~l~~~l~~Rf~~~-i~~~~-p~~~~r~~il~~~l 292 (330)
|.|.+-+ .+...+.+||... |++++ ...++-..+++..+
T Consensus 176 g~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 176 GVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 8887654 4556888899887 55544 45778888888776
No 279
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.27 E-value=8.9e-06 Score=69.10 Aligned_cols=120 Identities=16% Similarity=0.200 Sum_probs=68.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh---hHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG---ISNA 235 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~---~~~~ 235 (330)
.+-.++||+|||||.+++.+|..+ |.+++.++|++-++ ...+..+|.-+... .+-+++|| +++. ....
T Consensus 33 ~~~~~~GpagtGKtetik~La~~l-G~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfde-fnrl~~~vLS~ 103 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARAL-GRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDE-FNRLSEEVLSV 103 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCT-T--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEET-CCCSSHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHh-CCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhh-hhhhhHHHHHH
Confidence 467799999999999999999999 89999999987653 34455666544433 36889999 5533 2222
Q ss_pred HHHHHh----cCCCCC-------------CcEEEEecCCCC----CCcCHHHHhccccEEEecCCCHHHHHHHH
Q psy3808 236 LFLLLS----GVGNDM-------------DGILVLGATNIP----WVLDAAIRRRFEKRIYIALPELNARLFMF 288 (330)
Q Consensus 236 l~~~l~----~~~~~~-------------~~v~vi~ttn~~----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il 288 (330)
+...+. .+.... +.+-+..|.|+. ..+++.++.-| +.+.+-.||.....+++
T Consensus 104 i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 104 ISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 222221 111111 122233355543 35677777767 77999999988876665
No 280
>PHA02624 large T antigen; Provisional
Probab=98.25 E-value=7.7e-06 Score=77.33 Aligned_cols=104 Identities=20% Similarity=0.314 Sum_probs=61.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--------
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-------- 230 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-------- 230 (330)
+.++|+||||||||+++.+|++.++| ..+.+++..--+. |...-.....++++|+ ...
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G-~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD-~t~~~~~~~~L 497 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG-KSLNVNCPPDKLN------------FELGCAIDQFMVVFED-VKGQPADNKDL 497 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-eEEEeeCCcchhH------------HHhhhhhhceEEEeee-ccccccccccC
Confidence 57999999999999999999999954 4555654321111 2211112224777887 321
Q ss_pred ----hhH--HHHHHHHhcC-CCCCC-----------cEEEEecCCCCCCcCHHHHhccccEEEecC
Q psy3808 231 ----GIS--NALFLLLSGV-GNDMD-----------GILVLGATNIPWVLDAAIRRRFEKRIYIAL 278 (330)
Q Consensus 231 ----~~~--~~l~~~l~~~-~~~~~-----------~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~ 278 (330)
.+. .-+...+++- .-..+ .-++| |||. ..++..+.-||..++.|..
T Consensus 498 p~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlli-T~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 498 PSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIV-TMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred CcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEE-eecC-cccchhHHHHHHHhccccc
Confidence 111 3444555553 11000 12344 6553 5678888889988888765
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=98.23 E-value=3.3e-06 Score=68.31 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=28.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
.|++.|||||||||+|+.|+..+ +.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecch
Confidence 68999999999999999999999 677776654
No 282
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=5.5e-05 Score=69.11 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=81.7
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhC------CCcEEEecccchh--cc--------------ccChhHHHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEAN------NSTFFSVSSSDLV--SK--------------WLGESEKLVKTLFELAR 215 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~------~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~f~~a~ 215 (330)
++.++|+||+|+||||++..+|..+. +..+..++.+.+. .. ........+...+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~-- 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-- 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH--
Confidence 35799999999999999999997651 2334334433211 00 011111222222222
Q ss_pred hcCCeEEEEeCCcchh-----hHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccc----cEEEecCCCHH----
Q psy3808 216 AHRPSIIFIDERIDRG-----ISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFE----KRIYIALPELN---- 282 (330)
Q Consensus 216 ~~~~~ii~iDe~~~~~-----~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~----~~i~~~~p~~~---- 282 (330)
.....+|+||. .... ....+..++.....+...++|+.+|.....+...+ .+|. ..+-+.-.|..
T Consensus 252 ~~~~DlVLIDT-aGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~-~~~~~~~~~~~I~TKlDet~~~G 329 (388)
T PRK12723 252 SKDFDLVLVDT-IGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF-HQFSPFSYKTVIFTKLDETTCVG 329 (388)
T ss_pred hCCCCEEEEcC-CCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH-HHhcCCCCCEEEEEeccCCCcch
Confidence 24557999999 3221 22344455554443335678887777766666443 3331 12444444433
Q ss_pred HHHHHHHHH------hcC-C--CCCCChHhHHHHHHHcCCCCHHH
Q psy3808 283 ARLFMFRHH------LGN-T--RNTISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 283 ~r~~il~~~------l~~-~--~~~~~~~~~~~la~~~~g~~~~d 318 (330)
....+.... +.. . +.++...+-..+++..-||+-++
T Consensus 330 ~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 330 NLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred HHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 333333221 111 1 11223346677888888988665
No 283
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.19 E-value=9.5e-06 Score=66.86 Aligned_cols=32 Identities=31% Similarity=0.355 Sum_probs=24.9
Q ss_pred eEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
++++||||||||+++..++... .|.+++.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999999887754 3455655554
No 284
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.18 E-value=1.8e-05 Score=63.76 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=59.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhC-CCcEEEecccchh--------ccccC----h-hHHHHHHHHHHHHhcCCeEE
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSSDLV--------SKWLG----E-SEKLVKTLFELARAHRPSII 222 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~--------~~~~~----~-~~~~~~~~f~~a~~~~~~ii 222 (330)
+...+.|.||+|+|||+|.+.++.... ..--+.++...+. ....+ - .....+-.+..+....|.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 345699999999999999999998761 1111222222211 00000 0 11223334455566788999
Q ss_pred EEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 223 FIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 223 ~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
++|| .+|......+...+..+... ...+++ +|.
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii-~sh 140 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIF-ISH 140 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEE-EeC
Confidence 9999 66777777777777766432 334444 443
No 285
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.17 E-value=2.7e-05 Score=65.26 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=43.1
Q ss_pred HHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecC
Q psy3808 214 ARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIAL 278 (330)
Q Consensus 214 a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~ 278 (330)
|....|.+|+-|| .+|......++.++..+......++|+.| -|+.+.+++++++.+..
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VT------Hd~~lA~~~dr~i~l~d 217 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVT------HDPELAKYADRVIELKD 217 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEc------CCHHHHHhCCEEEEEeC
Confidence 3346789999999 67788888888888887655444555544 46778888888887754
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.17 E-value=4.8e-05 Score=59.56 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++++|+||+||||++.-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 469999999999999999999877
No 287
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.15 E-value=2.1e-06 Score=65.48 Aligned_cols=31 Identities=42% Similarity=0.681 Sum_probs=26.1
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
|+|.|||||||||+|+.++..+ +.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~-~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL-GFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-TCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCeEEEecc
Confidence 7899999999999999999999 666654443
No 288
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.3e-05 Score=71.02 Aligned_cols=103 Identities=24% Similarity=0.339 Sum_probs=55.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh---CC-CcEEEecccchhc----------cccCh------hHHHHHHHHHHHHhcC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA---NN-STFFSVSSSDLVS----------KWLGE------SEKLVKTLFELARAHR 218 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~---~~-~~~~~~~~~~~~~----------~~~~~------~~~~~~~~f~~a~~~~ 218 (330)
..++|.||+|+||||++..|+..+ .| ..+..++...+.. ...|- ....+... ......
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~--l~~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLA--LAELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHH--HHHhcC
Confidence 469999999999999999999864 12 2343344433210 00010 11111111 122345
Q ss_pred CeEEEEeCCcc-----hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHH
Q psy3808 219 PSIIFIDERID-----RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAA 265 (330)
Q Consensus 219 ~~ii~iDe~~~-----~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 265 (330)
..+|+||. .. ..... .+..+.........++|+.+|+....+...
T Consensus 216 ~DlVLIDT-aG~~~~d~~l~e-~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 216 KHMVLIDT-IGMSQRDRTVSD-QIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred CCEEEEcC-CCCCcccHHHHH-HHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 67999999 32 22222 223333333333557888888777666543
No 289
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.14 E-value=2.2e-05 Score=64.02 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=55.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC-CCcEEEecccch--hccccChh-HHHHHHHHHHHHhcCCeEEEEeC---Ccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSSDL--VSKWLGES-EKLVKTLFELARAHRPSIIFIDE---RIDRG 231 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~--~~~~~~~~-~~~~~~~f~~a~~~~~~ii~iDe---~~~~~ 231 (330)
..+.|.||+|+|||||++.+++.+. ..--+.++...+ ......-+ ....+-.+..+....|.++++|| .+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~ 105 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 4688999999999999999998751 111122222111 11100011 12223334445556789999999 56667
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEec
Q psy3808 232 ISNALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 232 ~~~~l~~~l~~~~~~~~~v~vi~t 255 (330)
....+...+..+.......+++.+
T Consensus 106 ~~~~l~~~l~~~~~~~~~tiiivs 129 (177)
T cd03222 106 QRLNAARAIRRLSEEGKKTALVVE 129 (177)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEE
Confidence 777777777665433223444433
No 290
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=1.3e-05 Score=67.45 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-+.|.||+|||||||.+.+|.-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999865
No 291
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.13 E-value=2e-05 Score=59.47 Aligned_cols=50 Identities=26% Similarity=0.388 Sum_probs=38.5
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCc--ceEEECCCCCchHHHHHHHHHHh
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWK--GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~ill~GppGtGKT~la~~la~~~ 182 (330)
.|.|+.-+++.+..++...+..+ .|.+ -+.|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 48899988888888885544322 2333 35689999999999999999986
No 292
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=2.6e-05 Score=64.64 Aligned_cols=92 Identities=22% Similarity=0.397 Sum_probs=54.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCC-------cEEEecc-cchhccccChh-------------HHHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNS-------TFFSVSS-SDLVSKWLGES-------------EKLVKTLFELARA 216 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~-------~~~~~~~-~~~~~~~~~~~-------------~~~~~~~f~~a~~ 216 (330)
+.+.|+.|||||||||+.+-+|.-+... .+.-++. +++.+-..|.. .-.-..+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 4578999999999999999999877211 1222332 23322211111 1112345566788
Q ss_pred cCCeEEEEeCCcchhh-HHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 217 HRPSIIFIDERIDRGI-SNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 217 ~~~~ii~iDe~~~~~~-~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
+.|.||++|| +.... ..+++..+. .+|-+|+|.
T Consensus 217 m~PEViIvDE-IGt~~d~~A~~ta~~------~GVkli~Ta 250 (308)
T COG3854 217 MSPEVIIVDE-IGTEEDALAILTALH------AGVKLITTA 250 (308)
T ss_pred cCCcEEEEec-cccHHHHHHHHHHHh------cCcEEEEee
Confidence 9999999999 54332 223333332 467777554
No 293
>PRK13949 shikimate kinase; Provisional
Probab=98.10 E-value=1.9e-05 Score=63.99 Aligned_cols=32 Identities=38% Similarity=0.558 Sum_probs=27.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
+.|+|.||||+|||++++.+|..+ +.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l-~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL-GLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCCeeccc
Confidence 369999999999999999999999 77776544
No 294
>PRK04296 thymidine kinase; Provisional
Probab=98.08 E-value=5.2e-05 Score=62.75 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=23.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHh--CCCcEEEe
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA--NNSTFFSV 190 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~--~~~~~~~~ 190 (330)
-.+++||||+|||+++..++..+ .+..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999998888776 33444444
No 295
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.06 E-value=3.6e-05 Score=65.65 Aligned_cols=35 Identities=34% Similarity=0.284 Sum_probs=24.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
...+++.||||||||+++..++... .+...+.++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3569999999999999976555443 3445555544
No 296
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.05 E-value=5.8e-05 Score=59.51 Aligned_cols=85 Identities=25% Similarity=0.283 Sum_probs=50.6
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccc---hhccccChhHHHHHHHHHHHHhcCCeEEEEeC---Ccc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSD---LVSKWLGESEKLVKTLFELARAHRPSIIFIDE---RID 229 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe---~~~ 229 (330)
+...+.|.||+|+|||||++++++.... ..-+.++... +...+.+.. ..+-.+..+....|.++++|| .+|
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~--~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGE--KMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHH--HHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 3356899999999999999999987610 1112222110 011111111 222223444556788999999 566
Q ss_pred hhhHHHHHHHHhcC
Q psy3808 230 RGISNALFLLLSGV 243 (330)
Q Consensus 230 ~~~~~~l~~~l~~~ 243 (330)
......+...+..+
T Consensus 103 ~~~~~~l~~~l~~~ 116 (144)
T cd03221 103 LESIEALEEALKEY 116 (144)
T ss_pred HHHHHHHHHHHHHc
Confidence 66677777777654
No 297
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.05 E-value=3.8e-05 Score=63.87 Aligned_cols=99 Identities=22% Similarity=0.300 Sum_probs=53.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChh----HHHHHHHHHHHH---------hcCCeEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGES----EKLVKTLFELAR---------AHRPSIIF 223 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~f~~a~---------~~~~~ii~ 223 (330)
+-+++.||||||||++++.+...+ .+..++-+.+..-....+.+. ...+...+.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 358888999999999999988766 344555555533211100000 001111111000 12346999
Q ss_pred EeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 224 IDERIDRGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 224 iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
||| ........+..++........+++++|=.+.
T Consensus 99 VDE-asmv~~~~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDE-ASMVDSRQLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp ESS-GGG-BHHHHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred Eec-ccccCHHHHHHHHHHHHhcCCEEEEECCcch
Confidence 999 7666666677777766654567788877664
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.05 E-value=8.6e-05 Score=60.48 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=61.0
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCc-------------EEEecccchh----------ccccChh--HHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNST-------------FFSVSSSDLV----------SKWLGES--EKLVKTLFE 212 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~-------------~~~~~~~~~~----------~~~~~~~--~~~~~~~f~ 212 (330)
..-+.|.||+|+|||||.+++.... |.. +..+...++. ....... ....+-.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~-G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~la 99 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYAS-GKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLA 99 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcC-CcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHH
Confidence 3468999999999999999997432 221 1111000010 0001100 112233344
Q ss_pred HHHhcC--CeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecC
Q psy3808 213 LARAHR--PSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIAL 278 (330)
Q Consensus 213 ~a~~~~--~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~ 278 (330)
.+.... |.++++|| .+|......+...+..+.. ....+++ +|..++ +.+.+++++.+..
T Consensus 100 ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIi-vSH~~~-----~~~~~d~i~~l~~ 163 (176)
T cd03238 100 SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVIL-IEHNLD-----VLSSADWIIDFGP 163 (176)
T ss_pred HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHH-----HHHhCCEEEEECC
Confidence 444566 89999999 6677777777777776543 2334444 444332 2344666666543
No 299
>KOG2383|consensus
Probab=98.05 E-value=3.5e-05 Score=68.78 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=24.8
Q ss_pred CCCCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 155 RVPWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 155 ~~~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
..||+|++|||.-|||||+|.-.+...+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4457999999999999999999998776
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.04 E-value=3.2e-05 Score=63.45 Aligned_cols=101 Identities=27% Similarity=0.342 Sum_probs=56.5
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhC-CCcEEEecccchhc---------------------------cccCh-h-HHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSSDLVS---------------------------KWLGE-S-EKL 206 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~---------------------------~~~~~-~-~~~ 206 (330)
+...+.|.||+|+|||||++.++.... ..--+.++..++.. ..... + ...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 335699999999999999999998761 11112222211100 00000 0 111
Q ss_pred HHHHHHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 207 VKTLFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 207 ~~~~f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
.+-.+..+....|.++++|| .+|......+...+..+.......+++ +|..
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii-~sh~ 157 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM-VLHD 157 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCC
Confidence 12223344456889999999 566777777777777654321234444 4443
No 301
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.03 E-value=0.00017 Score=74.10 Aligned_cols=149 Identities=20% Similarity=0.229 Sum_probs=82.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh---ccc------------cC---------------hhHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV---SKW------------LG---------------ESEKLVK 208 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~---~~~------------~~---------------~~~~~~~ 208 (330)
+-++++||+|.|||+++..++... + ++..++...-. ..+ .+ .....+.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~-~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGK-N-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhC-C-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 469999999999999999988766 3 55444442110 000 00 0011222
Q ss_pred HHHHHHH-hcCCeEEEEeCCcchhh----HHHHHHHHhcCCCCCCcEEEEecCCCCCCcC-HHHHhccccEEEec----C
Q psy3808 209 TLFELAR-AHRPSIIFIDERIDRGI----SNALFLLLSGVGNDMDGILVLGATNIPWVLD-AAIRRRFEKRIYIA----L 278 (330)
Q Consensus 209 ~~f~~a~-~~~~~ii~iDe~~~~~~----~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~-~~l~~Rf~~~i~~~----~ 278 (330)
.++.... ...|.+|+||+ .+... ...+..++... .+++.+|.+|.....+. ..+.- -+..+.+. +
T Consensus 111 ~~~~~l~~~~~~~~lvlDD-~h~~~~~~~~~~l~~l~~~~---~~~~~lv~~sR~~~~~~~~~l~~-~~~~~~l~~~~l~ 185 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDD-YHLITNPEIHEAMRFFLRHQ---PENLTLVVLSRNLPPLGIANLRV-RDQLLEIGSQQLA 185 (903)
T ss_pred HHHHHHhcCCCCEEEEEeC-cCcCCChHHHHHHHHHHHhC---CCCeEEEEEeCCCCCCchHhHHh-cCcceecCHHhCC
Confidence 2333222 25789999999 55432 23444444443 23344433553321121 12211 12233444 5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 279 PELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 279 p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
.+.++...++...+. ..+++..+..|.+.|+|+...
T Consensus 186 f~~~e~~~ll~~~~~---~~~~~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 186 FDHQEAQQFFDQRLS---SPIEAAESSRLCDDVEGWATA 221 (903)
T ss_pred CCHHHHHHHHHhccC---CCCCHHHHHHHHHHhCChHHH
Confidence 678888888865543 346888899999999998653
No 302
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=3.7e-05 Score=61.52 Aligned_cols=96 Identities=23% Similarity=0.351 Sum_probs=55.9
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccchhc----------c----ccChhHHHHHHHHHHHHhcCCeEE
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSDLVS----------K----WLGESEKLVKTLFELARAHRPSII 222 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~~~~----------~----~~~~~~~~~~~~f~~a~~~~~~ii 222 (330)
...+.|.||+|+|||+|+++++..+.. ..-+.++...+.. . +.+.. ..+-.+..+....|.++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~--~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ--RQRVALARALLLNPDLL 102 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH--HHHHHHHHHHhcCCCEE
Confidence 356999999999999999999987621 1112333322110 0 11111 22222344444568899
Q ss_pred EEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 223 FIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 223 ~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
++|| .+|......+...+..+... ...+++ +|.
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~-~sh 138 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEE-GRTVII-VTH 138 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEE-EeC
Confidence 9999 56666677777777665443 334444 444
No 303
>KOG1051|consensus
Probab=98.00 E-value=5.8e-05 Score=74.78 Aligned_cols=157 Identities=22% Similarity=0.334 Sum_probs=99.1
Q ss_pred Ccccccch-HHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcEEEecc
Q psy3808 123 KWTDVAGL-EAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSVSS 192 (330)
Q Consensus 123 ~~~~~~G~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~~~~~~ 192 (330)
.++.++|. ++-.+.+.+.+. +...++-+|.|.||+|||.++.-+++.. .+..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL~------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILS------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHHh------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36678775 444444444331 1112578999999999999999999876 1223455555
Q ss_pred cchh--ccccChhHHHHHHHHHHHH-hcCCeEEEEeCCcchhh-------HHHHHHHHhcCCCCCCcEEEEecCCCCC--
Q psy3808 193 SDLV--SKWLGESEKLVKTLFELAR-AHRPSIIFIDERIDRGI-------SNALFLLLSGVGNDMDGILVLGATNIPW-- 260 (330)
Q Consensus 193 ~~~~--~~~~~~~~~~~~~~f~~a~-~~~~~ii~iDe~~~~~~-------~~~l~~~l~~~~~~~~~v~vi~ttn~~~-- 260 (330)
..+. .++.|+.+..++.+...+. .....|||||| ++..+ .......+...... .++-+||||....
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige-lh~lvg~g~~~~~~d~~nlLkp~L~r-g~l~~IGatT~e~Y~ 329 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE-LHWLVGSGSNYGAIDAANLLKPLLAR-GGLWCIGATTLETYR 329 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc-eeeeecCCCcchHHHHHHhhHHHHhc-CCeEEEecccHHHHH
Confidence 5433 3566778888888888777 44566889999 44211 11122222222222 3477888886332
Q ss_pred ---CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC
Q psy3808 261 ---VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN 294 (330)
Q Consensus 261 ---~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~ 294 (330)
.-+|++-+||+. +.++.|+......|++..-..
T Consensus 330 k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 330 KCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhh
Confidence 357999999965 788999987766666655444
No 304
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.99 E-value=2e-05 Score=61.91 Aligned_cols=33 Identities=42% Similarity=0.699 Sum_probs=26.1
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
+++.|||||||||+|+.++..+ + ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~-~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL-G--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS-T--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC-C--CEEEeHHHHH
Confidence 6899999999999999999988 4 3445555443
No 305
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.98 E-value=2.4e-05 Score=61.17 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=24.9
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
|-+.|||||||||+++.+|..+ |.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~-gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL-GLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh-CCceee
Confidence 6789999999999999999999 777653
No 306
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.97 E-value=8.9e-06 Score=66.18 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.0
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
+..|+|+||||||||++|+.+|..+ +.+++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l-~~~~~d~ 35 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL-GYDFIDT 35 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEC
Confidence 3589999999999999999999999 6777643
No 307
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.96 E-value=4.2e-05 Score=78.93 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=91.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch------hccccChhHHH---HHHHHHHHHhcCCeEEEEeC--Cc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL------VSKWLGESEKL---VKTLFELARAHRPSIIFIDE--RI 228 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~f~~a~~~~~~ii~iDe--~~ 228 (330)
.+||.||+.||||+....+|.+. |..|++++-.+. .+.|+...... -..+.-.|...+ --|++|| -.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t-ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET-GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh-CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 49999999999999999999999 789999877543 33343222111 112222333333 3688999 22
Q ss_pred chhhHHHHHHHHhcCC-----------CCCCcEEEEecCCCCC------CcCHHHHhccccEEEecCCCHHHHHHHHHHH
Q psy3808 229 DRGISNALFLLLSGVG-----------NDMDGILVLGATNIPW------VLDAAIRRRFEKRIYIALPELNARLFMFRHH 291 (330)
Q Consensus 229 ~~~~~~~l~~~l~~~~-----------~~~~~v~vi~ttn~~~------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~ 291 (330)
...+..++.+++++-. .+.+.+++.+|-|+|. -+..+++.|| ..++|..-..++...|++..
T Consensus 968 pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~ILh~r 1046 (4600)
T COG5271 968 PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHHHHHHHhcc
Confidence 3556677888887532 2345678888888885 3678999999 56888888888888888866
Q ss_pred hcCC
Q psy3808 292 LGNT 295 (330)
Q Consensus 292 l~~~ 295 (330)
|+-.
T Consensus 1047 c~ia 1050 (4600)
T COG5271 1047 CEIA 1050 (4600)
T ss_pred CccC
Confidence 5443
No 308
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.96 E-value=5.3e-05 Score=78.18 Aligned_cols=131 Identities=21% Similarity=0.170 Sum_probs=87.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch------hccc-cChhHHH--H-HHHHHHHHhcCCeEEEEeCCc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL------VSKW-LGESEKL--V-KTLFELARAHRPSIIFIDERI 228 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~------~~~~-~~~~~~~--~-~~~f~~a~~~~~~ii~iDe~~ 228 (330)
+++||-|.||+|||+|..++|+.. |..+++++.++- ++.+ +++.... . ..-|-.|.. ...-|++|| +
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~t-G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDE-i 1620 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKT-GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDE-I 1620 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHh-cCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeeh-h
Confidence 579999999999999999999999 788888887642 2222 2221111 1 122333333 335788999 6
Q ss_pred ch---hhHHHHHHHHhcCCC-----------CCCcEEEEecCCCCC------CcCHHHHhccccEEEecCCCHHHHHHHH
Q psy3808 229 DR---GISNALFLLLSGVGN-----------DMDGILVLGATNIPW------VLDAAIRRRFEKRIYIALPELNARLFMF 288 (330)
Q Consensus 229 ~~---~~~~~l~~~l~~~~~-----------~~~~v~vi~ttn~~~------~l~~~l~~Rf~~~i~~~~p~~~~r~~il 288 (330)
.- .+...+...++.-.. -.+++.|.+|-|+-+ .++..+..|| .++++.-.+.+....|.
T Consensus 1621 NLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~dDi~~Ia 1699 (4600)
T COG5271 1621 NLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTTDDITHIA 1699 (4600)
T ss_pred hhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccccchHHHHH
Confidence 53 344455556653221 224567777777643 5889999999 66899999988888888
Q ss_pred HHHhc
Q psy3808 289 RHHLG 293 (330)
Q Consensus 289 ~~~l~ 293 (330)
..+..
T Consensus 1700 ~~~yp 1704 (4600)
T COG5271 1700 NKMYP 1704 (4600)
T ss_pred HhhCC
Confidence 77654
No 309
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.96 E-value=3.1e-05 Score=65.16 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=30.0
Q ss_pred CCCC-CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccc
Q psy3808 154 KRVP-WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSD 194 (330)
Q Consensus 154 ~~~~-~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~ 194 (330)
++.| ..-++++||||||||+++..++... .+...+.++...
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3444 3459999999999999999988754 344566666654
No 310
>PF14516 AAA_35: AAA-like domain
Probab=97.96 E-value=0.00027 Score=63.79 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=87.1
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChh-------------------------------
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGES------------------------------- 203 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~------------------------------- 203 (330)
|+.-+.+.||..+|||++...+...+ .+...+.+++..+.+......
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 34579999999999999999988776 355666676654422111100
Q ss_pred HHHHHHHHHH---HHhcCCeEEEEeCCcchhh-----HHHHHHHHhcCCC------CCCcEEEEecCCCCCCcCHHH-Hh
Q psy3808 204 EKLVKTLFEL---ARAHRPSIIFIDERIDRGI-----SNALFLLLSGVGN------DMDGILVLGATNIPWVLDAAI-RR 268 (330)
Q Consensus 204 ~~~~~~~f~~---a~~~~~~ii~iDe~~~~~~-----~~~l~~~l~~~~~------~~~~v~vi~ttn~~~~l~~~l-~~ 268 (330)
.......|+. .....|-||+||| +|... ...++.++..... ...++.+|++...+..+.... .+
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDE-iD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~S 188 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDE-IDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQS 188 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEec-hhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCC
Confidence 0111222221 1224688999999 76433 2344444433221 122333333332221111111 11
Q ss_pred --ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCC
Q psy3808 269 --RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYS 315 (330)
Q Consensus 269 --Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~ 315 (330)
.+...+.++.-+.++...+++.+ +...++..++.|-..|.|..
T Consensus 189 PFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 189 PFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGHP 233 (331)
T ss_pred CcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCCH
Confidence 23445777888888888877765 34456667999999999964
No 311
>PRK06762 hypothetical protein; Provisional
Probab=97.95 E-value=8.6e-05 Score=59.98 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=29.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
.-++|+|+|||||||+|+.++..+ +..++.++.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l-~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL-GRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCCeEEecHHHHH
Confidence 458899999999999999999998 4456666665554
No 312
>PRK14974 cell division protein FtsY; Provisional
Probab=97.95 E-value=0.00023 Score=63.90 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=26.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
+.-++|.||||+||||++..+|..+ .+..+..++++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3579999999999999988888776 23344444443
No 313
>PRK10536 hypothetical protein; Provisional
Probab=97.94 E-value=0.0001 Score=63.08 Aligned_cols=97 Identities=19% Similarity=0.322 Sum_probs=54.5
Q ss_pred ceEEECCCCCchHHHHHHHHHH-h-CC-CcEEEe-----cccchhccccChhHHHHHHHH----------------H-H-
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE-A-NN-STFFSV-----SSSDLVSKWLGESEKLVKTLF----------------E-L- 213 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~-~-~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~f----------------~-~- 213 (330)
-+++.||+|||||+||.+++.. + ++ ...+.+ .+.+..+-.+|..+..+.-.+ + .
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~ 155 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCL 155 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 6899999999999999999985 2 22 111222 222333333443322211100 0 0
Q ss_pred --------------HHh--cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 214 --------------ARA--HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 214 --------------a~~--~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
.+. -..++|++|| ........+..++..+... ..++++|-.+.
T Consensus 156 ~~~~~~Iei~~l~ymRGrtl~~~~vIvDE-aqn~~~~~~k~~ltR~g~~-sk~v~~GD~~Q 214 (262)
T PRK10536 156 RPEIGKVEIAPFAYMRGRTFENAVVILDE-AQNVTAAQMKMFLTRLGEN-VTVIVNGDITQ 214 (262)
T ss_pred HhccCcEEEecHHHhcCCcccCCEEEEec-hhcCCHHHHHHHHhhcCCC-CEEEEeCChhh
Confidence 000 1246999999 7777777777777766533 45666655543
No 314
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.94 E-value=4.3e-05 Score=64.26 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.8
Q ss_pred cceEEECCCCCchHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~ 180 (330)
..+||||+||+|||++|+.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 5699999999999999999863
No 315
>KOG0066|consensus
Probab=97.94 E-value=0.00034 Score=63.42 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=22.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..|.|+||.|+|||||...+...+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCC
Confidence 579999999999999999999877
No 316
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.94 E-value=4.1e-05 Score=66.64 Aligned_cols=94 Identities=22% Similarity=0.355 Sum_probs=53.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC---------CcEEEec-ccchhccc-------cCh------hHHHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN---------STFFSVS-SSDLVSKW-------LGE------SEKLVKTLFELAR 215 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~---------~~~~~~~-~~~~~~~~-------~~~------~~~~~~~~f~~a~ 215 (330)
.+++|.||||+||||+.++++..+.. ..+..++ ..++...+ ++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999998721 1221111 12221111 010 0011234666777
Q ss_pred hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 216 AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 216 ~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
.+.|.||++|| ... ...+..++..+. .+..+|+++..
T Consensus 192 ~~~P~villDE-~~~--~e~~~~l~~~~~---~G~~vI~ttH~ 228 (270)
T TIGR02858 192 SMSPDVIVVDE-IGR--EEDVEALLEALH---AGVSIIATAHG 228 (270)
T ss_pred hCCCCEEEEeC-CCc--HHHHHHHHHHHh---CCCEEEEEech
Confidence 78999999999 432 222333333332 24556666653
No 317
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.94 E-value=6.7e-05 Score=61.78 Aligned_cols=43 Identities=14% Similarity=0.337 Sum_probs=29.9
Q ss_pred HHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEec
Q psy3808 212 ELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 212 ~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~t 255 (330)
..|..+.|.++++|| .+|......++..+..+... .-+.+|.|
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVT 193 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVT 193 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 344457899999999 67888888888888776654 23444433
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.94 E-value=4.8e-05 Score=60.07 Aligned_cols=26 Identities=42% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...++|+||+|||||+|.+++|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34569999999999999999999865
No 319
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=0.00013 Score=59.21 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=57.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccchhc----------ccc-------Ch-------h-HHHHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSDLVS----------KWL-------GE-------S-EKLVKTL 210 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~~~~----------~~~-------~~-------~-~~~~~~~ 210 (330)
+...+.|.||+|+|||+|.+.+++.+.. .--+.++...+.. .|. .. + ....+-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 3356999999999999999999997610 0111222211100 000 00 0 1111222
Q ss_pred HHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 211 FELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 211 f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
+..+....|.++++|| .+|......+..++..+.. ... +|.+|..++
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~t-ii~~sh~~~ 156 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK--GKT-VIVIAHRLS 156 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCE-EEEEecCHH
Confidence 3444456889999999 6677777788888877643 233 444555433
No 320
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.92 E-value=4.2e-05 Score=63.49 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=55.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh--------------c-c-c---cC-hhHHHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV--------------S-K-W---LG-ESEKLVKTLFELARA 216 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~--------------~-~-~---~~-~~~~~~~~~f~~a~~ 216 (330)
+-++|.||+|+||||.+--+|..+ .+..+--++.+.+. + . + .. ..........+....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 568999999999999888888776 33333333332221 0 0 0 01 122334444444444
Q ss_pred cCCeEEEEeC----CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcC
Q psy3808 217 HRPSIIFIDE----RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLD 263 (330)
Q Consensus 217 ~~~~ii~iDe----~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~ 263 (330)
....+|+||- ..+......+..++... .+..-.+++.++.....+.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHHH
Confidence 4557999997 12233344555555444 2223455666655544444
No 321
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00024 Score=64.40 Aligned_cols=50 Identities=24% Similarity=0.265 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 130 LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..||..+
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 3455666665554433332211 1123679999999999999999999877
No 322
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.91 E-value=7.8e-05 Score=62.12 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
+-++|+||+|+||||+.+.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 468999999999999999998644
No 323
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.91 E-value=0.00019 Score=61.05 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=72.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC--CcEEEecccch--hccc-----cC------hhHHHH----HHHHHHHH---h
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN--STFFSVSSSDL--VSKW-----LG------ESEKLV----KTLFELAR---A 216 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~--~~~~~~~~~~~--~~~~-----~~------~~~~~~----~~~f~~a~---~ 216 (330)
-.+++.|++|||||+++..+...+.. ..++.+++..- ...| +. +.+..+ ..+.+... .
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 36999999999999999999877621 12232322110 0111 00 001111 11111111 1
Q ss_pred ---cCCeEEEEeCCcch-hhHHH-HHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHH
Q psy3808 217 ---HRPSIIFIDERIDR-GISNA-LFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHH 291 (330)
Q Consensus 217 ---~~~~ii~iDe~~~~-~~~~~-l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~ 291 (330)
.++.+|++|+ +.. ...+. +..++.. .+.-++.+|.++-....+++.++.-.+..+.++ .+......|++.+
T Consensus 94 ~k~~~~~LiIlDD-~~~~~~k~~~l~~~~~~--gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 94 KKNNPRFLIILDD-LGDKKLKSKILRQFFNN--GRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred cCCCCCeEEEEeC-CCCchhhhHHHHHHHhc--ccccceEEEEEeeecccCCHHHhhcceEEEEec-CcHHHHHHHHHhc
Confidence 2367899999 432 23333 3334432 223457777777777889999888776666665 5666676776665
Q ss_pred h
Q psy3808 292 L 292 (330)
Q Consensus 292 l 292 (330)
.
T Consensus 170 ~ 170 (241)
T PF04665_consen 170 N 170 (241)
T ss_pred c
Confidence 3
No 324
>KOG3347|consensus
Probab=97.90 E-value=1.1e-05 Score=62.03 Aligned_cols=32 Identities=41% Similarity=0.663 Sum_probs=27.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.+||++|.||||||+++..+|..+ +.++++++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-GLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-CCceEehh
Confidence 379999999999999999999887 67766543
No 325
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.90 E-value=0.00017 Score=59.00 Aligned_cols=99 Identities=20% Similarity=0.242 Sum_probs=57.4
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccchhc---------cccC----------------h-h-HHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSDLVS---------KWLG----------------E-S-EKLVK 208 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~~~~---------~~~~----------------~-~-~~~~~ 208 (330)
+...+.|.||+|+|||||++.+++.... ..-+.++...+.. .|+. . + ....+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 3356999999999999999999987610 1112222211100 0000 0 0 11222
Q ss_pred HHHHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 209 TLFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 209 ~~f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
-.+..+....|.++++|| .+|......+...+..+.. ...+++ +|..
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~-~sh~ 156 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIW-ITHH 156 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EecC
Confidence 334444557889999999 6677777778888776632 344444 4443
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.90 E-value=0.00025 Score=65.86 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
++..++|+|++|+||||++..+|..+ .+..+..++++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 34679999999999999999999877 23444445543
No 327
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.90 E-value=5.5e-05 Score=63.06 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=39.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCC---CcEEEe-cccchhc---------cccChhHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANN---STFFSV-SSSDLVS---------KWLGESEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~---~~~~~~-~~~~~~~---------~~~~~~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
-+++.||+||||||++++++..+.. ..++.+ ++.++.. ...+.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4889999999999999999988731 122221 1111110 00111112233444555556899999999
No 328
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.89 E-value=0.00011 Score=63.89 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=58.8
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC--CcEEEe-cccchhcc
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN--STFFSV-SSSDLVSK 198 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~--~~~~~~-~~~~~~~~ 198 (330)
..+++++-.....+.+.+.+.. +...++|.||+|+||||+++++...+.. ..++.+ ++.++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 4677777777777777766621 1135899999999999999999887732 223333 12221110
Q ss_pred -----ccC-hhHHHHHHHHHHHHhcCCeEEEEeCCcch
Q psy3808 199 -----WLG-ESEKLVKTLFELARAHRPSIIFIDERIDR 230 (330)
Q Consensus 199 -----~~~-~~~~~~~~~f~~a~~~~~~ii~iDe~~~~ 230 (330)
.+. ............+....|.+|+++| +..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgE-iR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGE-IRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEecc-CCC
Confidence 011 1112344555666678999999999 543
No 329
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.88 E-value=8.1e-05 Score=63.75 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||.|||||||.+++++.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358899999999999999999976
No 330
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.88 E-value=0.0013 Score=60.12 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=43.2
Q ss_pred CCeEEEEeCCcc-----hhhHHHHHHHHhcCCC-CCCcEEEEecCCC--CCCcCHHHHhccccEEEecCCCHHHHHHHHH
Q psy3808 218 RPSIIFIDERID-----RGISNALFLLLSGVGN-DMDGILVLGATNI--PWVLDAAIRRRFEKRIYIALPELNARLFMFR 289 (330)
Q Consensus 218 ~~~ii~iDe~~~-----~~~~~~l~~~l~~~~~-~~~~v~vi~ttn~--~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~ 289 (330)
.| ||+||+..+ ..+...+..+...+.. +-..|+|+ |++. ...|..++-.|.-+.|.+...+.+.-...+.
T Consensus 149 ~P-VVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFl-T~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 149 RP-VVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFL-TDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred CC-EEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEE-CCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 35 899998222 2233444444333322 23456665 3332 2345667766555778888888777777776
Q ss_pred HHhcCC
Q psy3808 290 HHLGNT 295 (330)
Q Consensus 290 ~~l~~~ 295 (330)
..+...
T Consensus 227 ~~L~~~ 232 (431)
T PF10443_consen 227 SQLDED 232 (431)
T ss_pred HHhccc
Confidence 666543
No 331
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.87 E-value=4.6e-05 Score=63.28 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=66.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccCh---hHHHHHHHHHHHHhcCCe----------EEEEeC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE---SEKLVKTLFELARAHRPS----------IIFIDE 226 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~a~~~~~~----------ii~iDe 226 (330)
-+.++|++|||||++++.++..+ |.+++ +++.+....... .-..+...|........+ ++|-|.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~-g~~~i--~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~ 79 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK-GIPIL--DADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDP 79 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-CCeEe--eCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCH
Confidence 48899999999999999999887 56554 666664432221 122334444322221111 122221
Q ss_pred --------CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHH
Q psy3808 227 --------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRH 290 (330)
Q Consensus 227 --------~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~ 290 (330)
.++..+...+...+.... ...++++-+ |-.....+...|+.++.+..|....+.++.++
T Consensus 80 ~~~~~l~~i~hP~i~~~~~~~~~~~~--~~~~vv~e~---pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R 146 (195)
T PRK14730 80 EERRWLENLIHPYVRERFEEELAQLK--SNPIVVLVI---PLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKR 146 (195)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcC--CCCEEEEEe---HHhcCcchHhCCCEEEEEECCHHHHHHHHHHc
Confidence 112222233333333321 123444322 22233455668899999998888777777654
No 332
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.87 E-value=0.00018 Score=58.56 Aligned_cols=98 Identities=20% Similarity=0.314 Sum_probs=57.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC-CCcEEEecccchh--------c--ccc--------C-------hhHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSSDLV--------S--KWL--------G-------ESEKLVKTLFE 212 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~--------~--~~~--------~-------~~~~~~~~~f~ 212 (330)
..+.|.||+|+|||+|.+.++.... ..--+.++...+. . .|+ + ......+-.+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 4689999999999999999998761 0111112211110 0 000 0 00112233344
Q ss_pred HHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 213 LARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 213 ~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
.+....|.++++|| .+|......+...+..+... ...+++ +|..
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~-~sh~ 155 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIV-IAHR 155 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC-CCEEEE-EeCC
Confidence 55557889999999 66777777787777766432 334444 4443
No 333
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=0.0001 Score=60.08 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=57.1
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhC-CCcEEEecccchh-----------------ccccCh--------h-HHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSSDLV-----------------SKWLGE--------S-EKLVKTL 210 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~-----------------~~~~~~--------~-~~~~~~~ 210 (330)
...+.|.||+|+|||||++.++.... ..--+.++...+. .-+.+. + ....+-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 34699999999999999999998751 0011111111100 001110 0 1112223
Q ss_pred HHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 211 FELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 211 f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+..+....|.++++|| .+|......+...+..+... ...+++ +|.
T Consensus 106 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii-~th 153 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILL-SSH 153 (173)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEE-ECC
Confidence 4455557889999999 67777778888888776543 334444 443
No 334
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.86 E-value=4.2e-05 Score=68.52 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.3
Q ss_pred eEEECCCCCchHHHHHHHHHHh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~ 182 (330)
+.|.||+||||||+.+.||+..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7799999999999999999864
No 335
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.86 E-value=8.9e-05 Score=58.69 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=32.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSK 198 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~ 198 (330)
-|.|+|.||+||||+|+++...+ .+.+.+.++.+.+...
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 48899999999999999999988 4567888888776543
No 336
>PRK13947 shikimate kinase; Provisional
Probab=97.86 E-value=1.7e-05 Score=64.50 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=27.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
+|+|.|+||||||++++.+|..+ +.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l-g~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL-SFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-CCCEEECc
Confidence 69999999999999999999999 78887544
No 337
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.86 E-value=0.00017 Score=61.85 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=27.7
Q ss_pred CCC-CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 155 RVP-WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 155 ~~~-~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
+.| ...++++||||||||+++..++... .+..++.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 444 3568999999999999999997653 3455555554
No 338
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.85 E-value=0.00011 Score=56.68 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
+++++||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888887766
No 339
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.85 E-value=0.0001 Score=70.24 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=32.6
Q ss_pred HHHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 210 LFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 210 ~f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
.|....-++|.++|+|| .+|......+.+.+..-. ..+.||..+-++
T Consensus 525 afARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l---p~~tvISV~Hr~ 574 (604)
T COG4178 525 AFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL---PDATVISVGHRP 574 (604)
T ss_pred HHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC---CCCEEEEeccch
Confidence 44444558999999999 667777777777776532 456777666443
No 340
>PRK13764 ATPase; Provisional
Probab=97.85 E-value=0.00011 Score=70.57 Aligned_cols=67 Identities=30% Similarity=0.450 Sum_probs=39.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC--CcEEEe-cccch-----hccccChhHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN--STFFSV-SSSDL-----VSKWLGESEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~--~~~~~~-~~~~~-----~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
.++|++|||||||||++++++..+.. ..+..+ ++.++ ...+.. ...........+....|.+|++||
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGE 332 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDE 332 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECC
Confidence 57999999999999999999988732 222222 11121 111110 001112222333457899999999
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.85 E-value=0.00048 Score=60.26 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
+++-++|.||+|+||||++..+|..+ .+..+.-++++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34678899999999999999998776 23344444443
No 342
>PRK03839 putative kinase; Provisional
Probab=97.85 E-value=1.6e-05 Score=65.29 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.|+|.|+|||||||+++.+|..+ +.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-GYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEehh
Confidence 48999999999999999999999 67776543
No 343
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.84 E-value=9.1e-05 Score=60.39 Aligned_cols=34 Identities=41% Similarity=0.733 Sum_probs=27.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
.|+|.||||+||||+|+.|++.+ ++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~---~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL---GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCcEEcHhHHh
Confidence 58999999999999999999986 35566765554
No 344
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.84 E-value=7.2e-05 Score=61.31 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=26.5
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
|.|+|++||||||+++.++. + |.+++ +++.+...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~-g~~~i--~~D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-L-GIPVI--DADKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-C-CCCEE--ecCHHHHh
Confidence 68999999999999999998 6 66554 55555433
No 345
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.82 E-value=0.00025 Score=65.99 Aligned_cols=104 Identities=22% Similarity=0.237 Sum_probs=54.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh----CCCcEEEecccchhc-------cc---------cChhHHHHHHHHHHHHhcC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVSSSDLVS-------KW---------LGESEKLVKTLFELARAHR 218 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~~~~~~~-------~~---------~~~~~~~~~~~f~~a~~~~ 218 (330)
+.++|.||+|+||||++..+|..+ .+..+..++++.... .| .......+...... ...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~--~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ--LRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH--hCC
Confidence 568999999999999988888765 234455555544210 00 01111112222221 124
Q ss_pred CeEEEEeC----CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCH
Q psy3808 219 PSIIFIDE----RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDA 264 (330)
Q Consensus 219 ~~ii~iDe----~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~ 264 (330)
..+|+||. ..+......+..++..........+|+.++..+..+..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 57999997 22333444565666532222233556655544444444
No 346
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.82 E-value=0.00018 Score=60.09 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.2
Q ss_pred cceEEECCCCCchHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~ 180 (330)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4699999999999999999994
No 347
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.82 E-value=7.6e-05 Score=70.51 Aligned_cols=165 Identities=22% Similarity=0.287 Sum_probs=96.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHhC-CCcEEEecccchhcc-----ccChh--------HHHHHHHHHHHHhcCCeEEEEe
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSSDLVSK-----WLGES--------EKLVKTLFELARAHRPSIIFID 225 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~~f~~a~~~~~~ii~iD 225 (330)
.+++.|.|||||-.+++++....+ ..||+.++|..+... ++|.. .+.....++. ...+.+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~---A~gGtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQ---ADGGTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhcccccccee---cCCCccHHH
Confidence 699999999999999999998762 348999999765432 11111 1111112221 234689999
Q ss_pred C--CcchhhHHHHHHHHhcCCC-C------CCcEEEEecCCCCC-------CcCHHHHhccccEEEecCCCHHHH---HH
Q psy3808 226 E--RIDRGISNALFLLLSGVGN-D------MDGILVLGATNIPW-------VLDAAIRRRFEKRIYIALPELNAR---LF 286 (330)
Q Consensus 226 e--~~~~~~~~~l~~~l~~~~~-~------~~~v~vi~ttn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r---~~ 286 (330)
| .+.-..+..|+..+..-.- + .-.|-||+||+.+- .+...|.-|.. .+.+.+|...+| ..
T Consensus 415 eIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~-~~~i~lP~lr~R~d~~~ 493 (606)
T COG3284 415 EIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLN-AFVITLPPLRERSDRIP 493 (606)
T ss_pred HhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhc-CeeeccCchhcccccHH
Confidence 9 3345667778877764321 1 11378899997752 23334444653 355566665544 34
Q ss_pred HHHHHhcCC---CCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 287 MFRHHLGNT---RNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 287 il~~~l~~~---~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
++.+++.+. +..+++.....|-..----+-.++.++++.++.
T Consensus 494 ~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 494 LLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAA 538 (606)
T ss_pred HHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 444444333 345666666665544433345677777776643
No 348
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.82 E-value=7.4e-05 Score=66.57 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-+.|.||+||||||+.+.||.-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 349
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.82 E-value=2.4e-05 Score=64.25 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=36.6
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC--cEEEecccch
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--TFFSVSSSDL 195 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--~~~~~~~~~~ 195 (330)
++|.++..+.+...+. .. ....++.++|+|++|+|||++++.+...+... .++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6888999999988773 11 11223689999999999999999998887211 2555555443
No 350
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.82 E-value=0.00014 Score=59.35 Aligned_cols=23 Identities=48% Similarity=0.683 Sum_probs=21.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-++|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48899999999999999999998
No 351
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.81 E-value=0.00024 Score=57.31 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=30.8
Q ss_pred HHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 213 LARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 213 ~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
.|.-+.|.+++-|| .+|......++.++..+... ++.|+.+|
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~--GtTVl~AT 194 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL--GTTVLMAT 194 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc--CcEEEEEe
Confidence 33447899999999 67888888888998887653 44555455
No 352
>PRK00625 shikimate kinase; Provisional
Probab=97.81 E-value=2.1e-05 Score=63.84 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=27.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.|+|.|+||||||++++.+|..+ +.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCEEEhh
Confidence 48999999999999999999999 78887654
No 353
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.80 E-value=0.00055 Score=61.19 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++.-++|.||+|+||||++..+|..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34579999999999999999999877
No 354
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.79 E-value=2.5e-05 Score=62.19 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=26.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
+|+|+|+||||||++++.++..+ +.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l-~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL-GLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh-CCCEEEch
Confidence 47999999999999999999999 67776443
No 355
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.79 E-value=2.2e-05 Score=64.10 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=29.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
+-++|.||||+||||+|+.++..+ +.+++.++.+.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~-~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL-AEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh-CCCccccCccHH
Confidence 468999999999999999999998 556665555443
No 356
>PRK08233 hypothetical protein; Provisional
Probab=97.78 E-value=0.00027 Score=57.87 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=26.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
-|.+.|+|||||||+|..++..+++.+++..+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 478889999999999999999985445554443
No 357
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.78 E-value=0.00083 Score=53.11 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=75.3
Q ss_pred ECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--hhhHHHHHHHHh
Q psy3808 164 FGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--RGISNALFLLLS 241 (330)
Q Consensus 164 ~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--~~~~~~l~~~l~ 241 (330)
.+++||||||++.+|++-+ +. +-.+.-+++.++ ...+.+..+.+........++|+|- .. ......+...+.
T Consensus 5 IAtiGCGKTTva~aL~~LF-g~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDR-NNh~~reR~ql~~~~~ 78 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLF-GE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADR-NNHQKRERKQLFEDVS 78 (168)
T ss_pred ecCCCcCHHHHHHHHHHHc-CC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeC-CCchHHHHHHHHHHHH
Confidence 5889999999999999988 32 444566666554 2455566655555434445888997 32 334455555555
Q ss_pred cCCC----CCCcEEEEecCCCCCCcCHHHHh--------cccc--EEEecCCCHHHHHHHHHHHhcCCC
Q psy3808 242 GVGN----DMDGILVLGATNIPWVLDAAIRR--------RFEK--RIYIALPELNARLFMFRHHLGNTR 296 (330)
Q Consensus 242 ~~~~----~~~~v~vi~ttn~~~~l~~~l~~--------Rf~~--~i~~~~p~~~~r~~il~~~l~~~~ 296 (330)
.+.. ...++-+|+-.=......+.+++ |=+. .|.....+...-..|+..++.+..
T Consensus 79 ~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 79 QLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 4433 22356666554222222222222 4333 366666677778888888887664
No 358
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.78 E-value=0.00045 Score=63.87 Aligned_cols=129 Identities=21% Similarity=0.242 Sum_probs=74.1
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--hhhHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID--RGISNALF 237 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--~~~~~~l~ 237 (330)
-++++||.+|||||+++.+...+. ..++.++..++......- ..... .+..........||+|| ++ ......+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~-~~~iy~~~~d~~~~~~~l-~d~~~-~~~~~~~~~~~yifLDE-Iq~v~~W~~~lk 114 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL-EEIIYINFDDLRLDRIEL-LDLLR-AYIELKEREKSYIFLDE-IQNVPDWERALK 114 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC-cceEEEEecchhcchhhH-HHHHH-HHHHhhccCCceEEEec-ccCchhHHHHHH
Confidence 799999999999999999888873 335555655554332211 11111 11222222447999999 54 33344555
Q ss_pred HHHhcCCCCCCcEEEEecCCCC--CCcCHHHHhccccEEEecCCCHHHHHH-------------HHHHHhcCCC
Q psy3808 238 LLLSGVGNDMDGILVLGATNIP--WVLDAAIRRRFEKRIYIALPELNARLF-------------MFRHHLGNTR 296 (330)
Q Consensus 238 ~~l~~~~~~~~~v~vi~ttn~~--~~l~~~l~~Rf~~~i~~~~p~~~~r~~-------------il~~~l~~~~ 296 (330)
.+.+.... .+++.+++... ......+..|. ..+.+.|.+..+... .+..++...+
T Consensus 115 ~l~d~~~~---~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~GG 184 (398)
T COG1373 115 YLYDRGNL---DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEKYLETGG 184 (398)
T ss_pred HHHccccc---eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHHHHHhCC
Confidence 55554322 35555443221 22334555585 668888888877754 5666665544
No 359
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.00018 Score=61.39 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=30.3
Q ss_pred HHHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCC
Q psy3808 210 LFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGND 246 (330)
Q Consensus 210 ~f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~ 246 (330)
++..|....|.++++|| .+|......+..++..+...
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 34455557899999999 77888899999999988776
No 360
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.77 E-value=0.00013 Score=61.47 Aligned_cols=33 Identities=39% Similarity=0.732 Sum_probs=26.7
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
|++.|||||||||+|+.++..+ +.+ .+++.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-g~~--~is~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-GLP--HISTGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCC--eeehhHHH
Confidence 7899999999999999999988 544 45555554
No 361
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=0.00024 Score=58.14 Aligned_cols=97 Identities=24% Similarity=0.321 Sum_probs=55.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccchh--------------------ccccC----------hh-HHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSDLV--------------------SKWLG----------ES-EKL 206 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~~~--------------------~~~~~----------~~-~~~ 206 (330)
..+.|.||+|+|||||++++++.+.. .--+.++..++. .-+.+ -+ ...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~ 106 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQ 106 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHH
Confidence 46889999999999999999987510 001111111000 00001 00 112
Q ss_pred HHHHHHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEec
Q psy3808 207 VKTLFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 207 ~~~~f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~t 255 (330)
.+-.+..+....|.++++|| .+|......+..++..+.......+++.+
T Consensus 107 qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 158 (178)
T cd03229 107 QRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158 (178)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 23334455557888999999 67777777887777766443233444433
No 362
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.77 E-value=0.00021 Score=57.76 Aligned_cols=87 Identities=29% Similarity=0.464 Sum_probs=50.7
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhC---CCc-------EEEecccc-hhc-----c----ccCh-h-HHHHHHHHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEAN---NST-------FFSVSSSD-LVS-----K----WLGE-S-EKLVKTLFELA 214 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~---~~~-------~~~~~~~~-~~~-----~----~~~~-~-~~~~~~~f~~a 214 (330)
+...+.|.||+|+|||||++.++..+. |.- +-.+.... +.. . .... + ....+-.+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 335699999999999999999999761 111 11111110 000 0 0000 0 11222334444
Q ss_pred HhcCCeEEEEeC---CcchhhHHHHHHHHhcC
Q psy3808 215 RAHRPSIIFIDE---RIDRGISNALFLLLSGV 243 (330)
Q Consensus 215 ~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~ 243 (330)
....|.++++|| .+|......+...+..+
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL 137 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 557889999999 56666677777777654
No 363
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.77 E-value=0.0002 Score=60.87 Aligned_cols=34 Identities=29% Similarity=0.643 Sum_probs=27.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
.++|.|||||||||+|+.+|..+ +.++ ++..++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~-g~~~--is~gdll 41 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE-NLKH--INMGNIL 41 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCcE--EECChHH
Confidence 59999999999999999999998 5554 4555554
No 364
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00068 Score=62.17 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=57.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh---CCCcEEEecccchhc-------cc---cC---hhHHHHHHHHHHHHhcCCeEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA---NNSTFFSVSSSDLVS-------KW---LG---ESEKLVKTLFELARAHRPSII 222 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~---~~~~~~~~~~~~~~~-------~~---~~---~~~~~~~~~f~~a~~~~~~ii 222 (330)
.-++|.||+|+||||++..+|..+ .|..+..++++.... .| .+ ........+..........+|
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999999754 233344444433211 11 00 011112333333444566899
Q ss_pred EEeC--C--cchhhHHHHHHHHhcCCC--CCCcEEEEecCCCCCCcCH
Q psy3808 223 FIDE--R--IDRGISNALFLLLSGVGN--DMDGILVLGATNIPWVLDA 264 (330)
Q Consensus 223 ~iDe--~--~~~~~~~~l~~~l~~~~~--~~~~v~vi~ttn~~~~l~~ 264 (330)
+||- . .+......+..++..... +...++|+.++.....+..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 9995 1 223344455555544322 2345677777766555543
No 365
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00021 Score=59.96 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEE
Q psy3808 213 LARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGIL 251 (330)
Q Consensus 213 ~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~ 251 (330)
.|....|.+|++|| .+|..++..++.++..+....+-..
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~ 195 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTY 195 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceE
Confidence 33446789999999 6677888888888887766544333
No 366
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.74 E-value=0.00011 Score=66.55 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=41.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC---CcEEEe-cccchh---------ccccChhHHHHHHHHHHHHhcCCeEEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN---STFFSV-SSSDLV---------SKWLGESEKLVKTLFELARAHRPSIIFID 225 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~---~~~~~~-~~~~~~---------~~~~~~~~~~~~~~f~~a~~~~~~ii~iD 225 (330)
..+++.||+|+||||+.+++...+.. ..++.+ ++.++. ....|............+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 46899999999999999999987731 223222 111211 01112111223444555666899999999
Q ss_pred C
Q psy3808 226 E 226 (330)
Q Consensus 226 e 226 (330)
|
T Consensus 203 E 203 (343)
T TIGR01420 203 E 203 (343)
T ss_pred C
Confidence 9
No 367
>KOG2543|consensus
Probab=97.74 E-value=0.0011 Score=59.24 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=44.2
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
.+.+.+.++..+...+. .....-|..+.|+|..|||||.+++.+.+.+ +.+.+.+++-+
T Consensus 7 ~v~~Re~qi~~L~~Llg---------~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLG---------NNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-NLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhC---------CCCcccceeEEEeccCCCchhHHHHHHHhhc-CCcceeeehHH
Confidence 46777888888887662 1111233568999999999999999999998 67777777743
No 368
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.74 E-value=3.1e-05 Score=63.62 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=27.1
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
|++.|||||||||+|+.++..+ +. ..++++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~-~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF-GF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CC--eEEECChHH
Confidence 6899999999999999999998 54 456665554
No 369
>PRK14532 adenylate kinase; Provisional
Probab=97.74 E-value=3.1e-05 Score=63.98 Aligned_cols=35 Identities=34% Similarity=0.673 Sum_probs=28.1
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
.++|.|||||||||+++.+|..+ +.+ .++++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-g~~--~is~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-GMV--QLSTGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCe--EEeCcHHHH
Confidence 48999999999999999999988 544 456655544
No 370
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.73 E-value=0.00055 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNS 185 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~ 185 (330)
-.+++||.|+|||.+..||+-.+.+.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~ 49 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGK 49 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcc
Confidence 57899999999999999998877433
No 371
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.73 E-value=9.7e-05 Score=67.38 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.2
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.++++.||+|||||+++.+++..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 57999999999999999998876
No 372
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.00027 Score=59.40 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHh
Q psy3808 209 TLFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR 268 (330)
Q Consensus 209 ~~f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~ 268 (330)
-++..|.-..|-++++|| .+|......+...+..+....+..-+|.-|-.+++++|-+-.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccce
Confidence 344455557899999999 667777777888887776665555555567777777775544
No 373
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.73 E-value=0.00034 Score=60.02 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
+...++++||||||||+++..++.+. .|.+.+.++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 34569999999999999998776542 3455555544
No 374
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.73 E-value=0.00032 Score=59.27 Aligned_cols=34 Identities=35% Similarity=0.678 Sum_probs=27.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
.|+++||||+||||+++.+|..+ +.+. ++..++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-~~~~--is~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-GIPH--ISTGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcE--EECCccH
Confidence 48999999999999999999998 5544 4454443
No 375
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.72 E-value=0.00015 Score=64.55 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=45.0
Q ss_pred CCCCC-cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhc----------------cccChhHHHHHHHHHHH
Q psy3808 154 KRVPW-KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVS----------------KWLGESEKLVKTLFELA 214 (330)
Q Consensus 154 ~~~~~-~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~f~~a 214 (330)
++.|. +-++|+||||||||+||..++... .+.+++.++..+... ..+...+..+..+....
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 34443 458899999999999988877655 344555665533211 01111233344444445
Q ss_pred HhcCCeEEEEeC
Q psy3808 215 RAHRPSIIFIDE 226 (330)
Q Consensus 215 ~~~~~~ii~iDe 226 (330)
+...+.+|+||.
T Consensus 130 ~~~~~~lIVIDS 141 (321)
T TIGR02012 130 RSGAVDIIVVDS 141 (321)
T ss_pred hccCCcEEEEcc
Confidence 567789999998
No 376
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.72 E-value=0.00014 Score=63.80 Aligned_cols=104 Identities=21% Similarity=0.281 Sum_probs=60.1
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC--cEEEec-ccch
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--TFFSVS-SSDL 195 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--~~~~~~-~~~~ 195 (330)
....++++++-.....+.+.+.+..... ....+++.||+||||||++.++...++.. .++.+- +.++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3456788887766666666665543221 12579999999999999999999988433 333221 2222
Q ss_pred hccc------c-ChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhH
Q psy3808 196 VSKW------L-GESEKLVKTLFELARAHRPSIIFIDERIDRGIS 233 (330)
Q Consensus 196 ~~~~------~-~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~ 233 (330)
.-.. . .........++..+....|.+|+++| +.....
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigE-iR~~e~ 211 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGE-IRDPEA 211 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESC-E-SCHH
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccc-cCCHhH
Confidence 1110 0 11222445666677778899999999 554433
No 377
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00027 Score=59.14 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 213 LARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 213 ~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
.+....|.++++|| .+|......+...+..+.......++|.++.
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 33446788999999 6777777888888877654323455555554
No 378
>PRK06217 hypothetical protein; Validated
Probab=97.72 E-value=3.6e-05 Score=63.29 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=27.1
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.|+|.|+|||||||+++.|+..+ +.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-DIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEEEcC
Confidence 58999999999999999999999 67776544
No 379
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.71 E-value=0.0002 Score=64.35 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=45.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC-CcEEEe-cccchhc-c-------c-----cChhHHHHHHHHHHHHhcCCeEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN-STFFSV-SSSDLVS-K-------W-----LGESEKLVKTLFELARAHRPSIIF 223 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~-~~~~~~-~~~~~~~-~-------~-----~~~~~~~~~~~f~~a~~~~~~ii~ 223 (330)
.++++.||+||||||+++++...++. ..++.+ +..++.- . + .+...-....+...+....|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 57999999999999999999998732 122222 1111110 0 0 011122345677777888999999
Q ss_pred EeCCcch
Q psy3808 224 IDERIDR 230 (330)
Q Consensus 224 iDe~~~~ 230 (330)
+.| +..
T Consensus 241 vGE-iR~ 246 (332)
T PRK13900 241 VGE-LRG 246 (332)
T ss_pred EEe-cCC
Confidence 999 543
No 380
>PRK10867 signal recognition particle protein; Provisional
Probab=97.71 E-value=0.00091 Score=62.10 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=43.9
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--C-CCcEEEecccchhcc----------------cc----ChhHHHHHHHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--N-NSTFFSVSSSDLVSK----------------WL----GESEKLVKTLFEL 213 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~-~~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~f~~ 213 (330)
++.-++++||+|+||||++..+|..+ . |..+..++++.+... +. .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 34679999999999999888888765 2 445555555422110 00 1123333445555
Q ss_pred HHhcCCeEEEEeC
Q psy3808 214 ARAHRPSIIFIDE 226 (330)
Q Consensus 214 a~~~~~~ii~iDe 226 (330)
++.....+|+||-
T Consensus 179 a~~~~~DvVIIDT 191 (433)
T PRK10867 179 AKENGYDVVIVDT 191 (433)
T ss_pred HHhcCCCEEEEeC
Confidence 5656678999998
No 381
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.71 E-value=3.7e-05 Score=61.02 Aligned_cols=27 Identities=37% Similarity=0.660 Sum_probs=23.7
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
++|+|+||+||||+|+.++..+ +..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~-~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL-GAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc-CCEEE
Confidence 6899999999999999999997 55554
No 382
>KOG0482|consensus
Probab=97.71 E-value=7.1e-05 Score=68.69 Aligned_cols=158 Identities=25% Similarity=0.304 Sum_probs=87.8
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCC---cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccCh
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPW---KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE 202 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 202 (330)
+|.|.+++|+.|.-.++-..... .+.+... -+|+|.|.||+.||-|...+.+-. ....+.. ... +.-+|-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~---~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rla-pRgvYTT-GrG--SSGVGL 415 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKS---PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLA-PRGVYTT-GRG--SSGVGL 415 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCC---CCCCceeecceeEEecCCCchhHHHHHHHHHhcC-cccceec-CCC--CCcccc
Confidence 58999999999987765433211 1112212 259999999999999999999876 2333321 110 111222
Q ss_pred hHHHHHHH------HH--HHHhcCCeEEEEeCCcchh---hHHHHHHHHh---------cCCC-CCCcEEEEecCCCCC-
Q psy3808 203 SEKLVKTL------FE--LARAHRPSIIFIDERIDRG---ISNALFLLLS---------GVGN-DMDGILVLGATNIPW- 260 (330)
Q Consensus 203 ~~~~~~~~------f~--~a~~~~~~ii~iDe~~~~~---~~~~l~~~l~---------~~~~-~~~~v~vi~ttn~~~- 260 (330)
+....+.- .+ ...-...+|.+||| +|+. -..++-..|. ++.. -+.++-|+++.|+.+
T Consensus 416 TAAVmkDpvTgEM~LEGGALVLAD~GICCIDE-fDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayG 494 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMVLEGGALVLADGGICCIDE-FDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYG 494 (721)
T ss_pred chhhhcCCCCCeeEeccceEEEccCceEeehh-hhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCcccc
Confidence 22221110 00 00012346888999 5432 2222222222 1111 123567788888754
Q ss_pred ------------CcCHHHHhccccEEEe-cCCCHHHHHHHHHHH
Q psy3808 261 ------------VLDAAIRRRFEKRIYI-ALPELNARLFMFRHH 291 (330)
Q Consensus 261 ------------~l~~~l~~Rf~~~i~~-~~p~~~~r~~il~~~ 291 (330)
.++.+|++||+....+ +.|+.+.-..+-++.
T Consensus 495 RYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~Hi 538 (721)
T KOG0482|consen 495 RYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHI 538 (721)
T ss_pred ccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHh
Confidence 4788999999886433 668877666666553
No 383
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00028 Score=56.18 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=32.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV 196 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~ 196 (330)
.-+.|+|.+|+||||+|.++...+ .|...+.++.+++.
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 468899999999999999999988 56778888887663
No 384
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00024 Score=61.44 Aligned_cols=67 Identities=22% Similarity=0.358 Sum_probs=41.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCC---CcEEEe-cccch---------hccccChhHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANN---STFFSV-SSSDL---------VSKWLGESEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~---~~~~~~-~~~~~---------~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
-||++||+||||||...++...++. .+++.+ ++-++ ..+-+|..........+.|....|.||++-|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEec
Confidence 3888899999999998888887721 122222 11111 1122333333344455666678899999999
No 385
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00012 Score=62.27 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=30.9
Q ss_pred hcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 216 AHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 216 ~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
.+.|.+|++|| .+|......+...+..+.......+|+.|-
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH 197 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH 197 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 36799999999 778888888888888877654445555453
No 386
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.70 E-value=0.00022 Score=59.52 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=19.5
Q ss_pred cceEEECCCCCchHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVA 179 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la 179 (330)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 387
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.69 E-value=6.5e-05 Score=51.05 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=24.0
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
+.+.|+||+|||++++.++..+.+..+..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999986333444333
No 388
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.69 E-value=0.00018 Score=64.04 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=44.8
Q ss_pred CCCCC-cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhc----------------cccChhHHHHHHHHHHH
Q psy3808 154 KRVPW-KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVS----------------KWLGESEKLVKTLFELA 214 (330)
Q Consensus 154 ~~~~~-~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~f~~a 214 (330)
++.|. +-+.++||||||||+||..++... .+...+.++..+... ..+...+..+..+....
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 34443 358899999999999999888654 244556666533111 01112233333444445
Q ss_pred HhcCCeEEEEeC
Q psy3808 215 RAHRPSIIFIDE 226 (330)
Q Consensus 215 ~~~~~~ii~iDe 226 (330)
+...+.+|+||-
T Consensus 130 ~s~~~~lIVIDS 141 (325)
T cd00983 130 RSGAVDLIVVDS 141 (325)
T ss_pred hccCCCEEEEcc
Confidence 566789999998
No 389
>PRK14531 adenylate kinase; Provisional
Probab=97.69 E-value=4.5e-05 Score=62.74 Aligned_cols=35 Identities=31% Similarity=0.619 Sum_probs=27.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
..+++.|||||||||+++.+|..+ |.+. +++.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~-g~~~--is~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH-GLRH--LSTGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCe--EecccHH
Confidence 469999999999999999999998 5554 4454443
No 390
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.69 E-value=0.00037 Score=56.49 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=26.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.+++.||||||||++|..++..+ +.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-GLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-CCCcEeCcCC
Confidence 48999999999999999999987 4555555543
No 391
>PRK13948 shikimate kinase; Provisional
Probab=97.69 E-value=5.3e-05 Score=62.00 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
++..|+|.|++|||||++++.++..+ +.+|+..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l-g~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL-MLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc-CCCEEECC
Confidence 44789999999999999999999999 78887554
No 392
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.69 E-value=3.9e-05 Score=61.79 Aligned_cols=32 Identities=38% Similarity=0.645 Sum_probs=25.7
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
++|.|||||||||+++.+++.+ +..++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-GAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-CCeEE--eCccc
Confidence 5789999999999999999998 55554 44443
No 393
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.68 E-value=5.3e-05 Score=62.30 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=28.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
-++|+||+|||||.+|-++|+.+ |.|++..+.-.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~-g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKT-GAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH---EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHh-CCCEEEecceecccc
Confidence 37899999999999999999999 789998887665544
No 394
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.67 E-value=0.00012 Score=65.14 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=45.5
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
+++.|+++++.++..++...- .+.....+-++|.||+|+|||++++.+.+.+...+++.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA------~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAA------QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHH------hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 389999999999988774321 2223333568999999999999999999988555666553
No 395
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.67 E-value=0.00026 Score=58.74 Aligned_cols=98 Identities=21% Similarity=0.295 Sum_probs=55.4
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCC-cEEEecccch-----------h----ccccChh---------------
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNS-TFFSVSSSDL-----------V----SKWLGES--------------- 203 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~-~~~~~~~~~~-----------~----~~~~~~~--------------- 203 (330)
+...+.|.||+|+|||+|.+.++..+ ... --+.++...+ . ..+.+.+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS 113 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLS 113 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCC
Confidence 33569999999999999999999875 210 0011111100 0 0001100
Q ss_pred -HHHHHHHHHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEec
Q psy3808 204 -EKLVKTLFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 204 -~~~~~~~f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~t 255 (330)
....+-.+..+....|.++++|| .+|......+...+..+... ...+++.+
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~s 168 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSI 168 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 11111223344446788999999 66777777787777765433 34555534
No 396
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.67 E-value=0.0008 Score=60.58 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=63.2
Q ss_pred cCCeEEEEeCCcchhhHHHHHHHH---hcCCCCCCcEEEEecCCCCC---------------CcCHHHHh-ccccEEEec
Q psy3808 217 HRPSIIFIDERIDRGISNALFLLL---SGVGNDMDGILVLGATNIPW---------------VLDAAIRR-RFEKRIYIA 277 (330)
Q Consensus 217 ~~~~ii~iDe~~~~~~~~~l~~~l---~~~~~~~~~v~vi~ttn~~~---------------~l~~~l~~-Rf~~~i~~~ 277 (330)
..+-||+||| +|+........++ ..+... .++++|.+.+... ......+. .|+..+.+|
T Consensus 171 ~~~iViiIDd-LDR~~~~~i~~~l~~ik~~~~~-~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP 248 (325)
T PF07693_consen 171 KKRIVIIIDD-LDRCSPEEIVELLEAIKLLLDF-PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLP 248 (325)
T ss_pred CceEEEEEcc-hhcCCcHHHHHHHHHHHHhcCC-CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeC
Confidence 3467999999 8876555444433 333333 5677776664321 11223333 677789999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC----CC---------------hHhHHHHHHHcC--CCCHHHHHHHHhhcc
Q psy3808 278 LPELNARLFMFRHHLGNTRNT----IS---------------DENLKELAKRTE--GYSGADISTLERNFK 327 (330)
Q Consensus 278 ~p~~~~r~~il~~~l~~~~~~----~~---------------~~~~~~la~~~~--g~~~~di~~l~~~a~ 327 (330)
+|+..+...++...+...... .. ...+..+..... .-++++|+.+++...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~~ 319 (325)
T PF07693_consen 249 PPSPSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSLS 319 (325)
T ss_pred CCCHHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHH
Confidence 999988887776664333211 11 122333333322 358899999887654
No 397
>PRK13695 putative NTPase; Provisional
Probab=97.67 E-value=0.00082 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988775
No 398
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.67 E-value=0.00059 Score=56.20 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=18.5
Q ss_pred eEEECCCCCchHHHHHHHHH
Q psy3808 161 ILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~ 180 (330)
++|+||.|+|||++.+.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.67 E-value=0.00082 Score=54.63 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=25.4
Q ss_pred eEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
+++.||||+|||+++..++..+ .+..+..++++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999999876 23445555544
No 400
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00038 Score=58.57 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.+++.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468899999999999999999865
No 401
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.66 E-value=0.00041 Score=55.69 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=29.1
Q ss_pred cCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEec
Q psy3808 217 HRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 217 ~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~t 255 (330)
.+| |+++|| .+|......++.++..+......++++.|
T Consensus 147 ~~P-ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVT 187 (231)
T COG3840 147 EQP-ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187 (231)
T ss_pred cCC-eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 456 999999 67888888888888888777666666644
No 402
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.66 E-value=0.00017 Score=59.92 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=27.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
.|.|+|++||||||+++.++. + |.++ ++++.+...
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~-g~~~--i~~D~~~~~ 38 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-L-GAPV--IDADAIAHE 38 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-c-CCEE--EEecHHHHH
Confidence 589999999999999999998 6 6655 455555443
No 403
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.66 E-value=0.00041 Score=61.08 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=27.7
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--C-C-CcEEEecccc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--N-N-STFFSVSSSD 194 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~-~-~~~~~~~~~~ 194 (330)
++.++|.||+|+||||++..+|..+ . + ..+..++.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3569999999999999999999876 2 3 4555555543
No 404
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.66 E-value=4.8e-05 Score=59.95 Aligned_cols=30 Identities=33% Similarity=0.564 Sum_probs=26.6
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
|++.|+||||||++|+.++..+ +.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~-~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL-GLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-CCceeccc
Confidence 6899999999999999999999 78877654
No 405
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00025 Score=61.52 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+-|.||+|+|||||.+.||+-.
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCcC
Confidence 458999999999999999999865
No 406
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.65 E-value=4.6e-05 Score=60.96 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=28.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.+++|.|++|+||||+.+++|+.+ +.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL-NLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc-CCCcccch
Confidence 479999999999999999999999 78887543
No 407
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00023 Score=60.09 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-++|.||+||||||+.+.|-+-+
T Consensus 29 f~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 48899999999999999987755
No 408
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00055 Score=56.38 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.3
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
-.-|.||+||||||+.+++-..
T Consensus 35 VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhh
Confidence 4778999999999999998764
No 409
>KOG4509|consensus
Probab=97.64 E-value=0.00021 Score=56.27 Aligned_cols=72 Identities=24% Similarity=0.353 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3808 4 FDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKG 75 (330)
Q Consensus 4 ~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~ 75 (330)
+.+|--...+||+.|..|+|.+|+-+|++++..+.++++.-.-+..-+-.++.+...|+++++.++.+++..
T Consensus 12 ~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqe 83 (247)
T KOG4509|consen 12 LKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQE 83 (247)
T ss_pred hhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 567888999999999999999999999999999999998775455556789999999999999999999754
No 410
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.64 E-value=0.00022 Score=59.25 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=23.1
Q ss_pred CeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 219 PSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 219 ~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
-++|++|| ........+..++..+..+ .+++++|-..
T Consensus 120 ~~~iIvDE-aQN~t~~~~k~ilTR~g~~-skii~~GD~~ 156 (205)
T PF02562_consen 120 NAFIIVDE-AQNLTPEELKMILTRIGEG-SKIIITGDPS 156 (205)
T ss_dssp SEEEEE-S-GGG--HHHHHHHHTTB-TT--EEEEEE---
T ss_pred ceEEEEec-ccCCCHHHHHHHHcccCCC-cEEEEecCce
Confidence 47999999 8888888888888887644 5666666553
No 411
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.64 E-value=0.0013 Score=60.73 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=27.5
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
+.-++|+||+|+||||++..+|..+ .|..+.-++++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 4679999999999999999999876 23445545553
No 412
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.64 E-value=0.00047 Score=63.93 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=58.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEE-Eecccc-----
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFF-SVSSSD----- 194 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~-~~~~~~----- 194 (330)
..+|++++......+.+.+.+.. |..-+|++||+||||||+..++.+.++ .+.. .++..+
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~-------------p~GliLvTGPTGSGKTTTLY~~L~~ln-~~~~nI~TiEDPVE~~ 299 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR-------------PQGLILVTGPTGSGKTTTLYAALSELN-TPERNIITIEDPVEYQ 299 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC-------------CCeEEEEeCCCCCCHHHHHHHHHHHhc-CCCceEEEeeCCeeee
Confidence 45678888888888888887732 223488889999999999999999883 3222 111111
Q ss_pred ---hhccccCh-hHHHHHHHHHHHHhcCCeEEEEeCCcch
Q psy3808 195 ---LVSKWLGE-SEKLVKTLFELARAHRPSIIFIDERIDR 230 (330)
Q Consensus 195 ---~~~~~~~~-~~~~~~~~f~~a~~~~~~ii~iDe~~~~ 230 (330)
+..--+.. ..-.....++....+.|.||.+.| +.+
T Consensus 300 ~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGE-IRD 338 (500)
T COG2804 300 LPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGE-IRD 338 (500)
T ss_pred cCCcceeecccccCCCHHHHHHHHhccCCCeEEEec-cCC
Confidence 11000000 001122334444558999999999 543
No 413
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00048 Score=57.07 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~ 181 (330)
...+.|.||+|+|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999974
No 414
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=0.00033 Score=63.61 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|||||||.+.|++..
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCC
Confidence 469999999999999999999865
No 415
>PRK14530 adenylate kinase; Provisional
Probab=97.63 E-value=6e-05 Score=63.69 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=25.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
.|+|.|||||||||+++.||..+ +.+++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~-~~~~i 32 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF-GVEHV 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEE
Confidence 69999999999999999999998 65554
No 416
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.63 E-value=0.00055 Score=58.26 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=44.6
Q ss_pred CCCC-CcceEEECCCCCchHHHHHHHHHHh--C-CCcEEEecccchhcc--------------------------c----
Q psy3808 154 KRVP-WKGILLFGPPGTGKSYLAKAVATEA--N-NSTFFSVSSSDLVSK--------------------------W---- 199 (330)
Q Consensus 154 ~~~~-~~~ill~GppGtGKT~la~~la~~~--~-~~~~~~~~~~~~~~~--------------------------~---- 199 (330)
++.| ...+|+.||||||||+++..++... . |.+++.++..+-... +
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 3443 3569999999999999998877433 3 566666655321100 0
Q ss_pred ---cChhHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 200 ---LGESEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 200 ---~~~~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
..........+........+.+++||.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDs 123 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDS 123 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEET
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 012244455666666667789999998
No 417
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.63 E-value=5.8e-05 Score=62.59 Aligned_cols=33 Identities=42% Similarity=0.736 Sum_probs=26.8
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
|+|.||||||||++++.|+..+ +.++ ++.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-~~~~--i~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-GLPH--ISTGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCeE--EECcHHH
Confidence 7999999999999999999998 5544 4555544
No 418
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.62 E-value=0.00048 Score=57.49 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=55.6
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh---CCCcEEEecccchh--------cc---c--------cC-------------
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA---NNSTFFSVSSSDLV--------SK---W--------LG------------- 201 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~---~~~~~~~~~~~~~~--------~~---~--------~~------------- 201 (330)
+...+.|.||+|+|||||.+.+++.. +..--+.++...+. .. | .+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~ 104 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEG 104 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcccc
Confidence 44579999999999999999999872 11111222211110 00 0 00
Q ss_pred hh-HHHHHHHHHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 202 ES-EKLVKTLFELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 202 ~~-~~~~~~~f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
-+ ....+-.+..+....|.++++|| .+|......+...+..+... ...+++ +|.
T Consensus 105 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~tiii-~sh 162 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLI-ITH 162 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEE-Eec
Confidence 00 11112223344456889999999 66777777777777765432 344555 444
No 419
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.62 E-value=0.00044 Score=58.29 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.+++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33568999999999999999999875
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.62 E-value=0.00055 Score=56.41 Aligned_cols=71 Identities=27% Similarity=0.465 Sum_probs=43.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC-CcEEEecc-cchhc---ccc----------ChhHHHHHHHHHHHHhcCCeEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN-STFFSVSS-SDLVS---KWL----------GESEKLVKTLFELARAHRPSIIF 223 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~-~~~~~---~~~----------~~~~~~~~~~f~~a~~~~~~ii~ 223 (330)
..++|.||+|+||||++++++..++. ...+.+.. .++.. .+. +........+...+....|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 57999999999999999999988721 12222211 11110 000 01112345556666667899999
Q ss_pred EeCCcch
Q psy3808 224 IDERIDR 230 (330)
Q Consensus 224 iDe~~~~ 230 (330)
++| +..
T Consensus 106 igE-ir~ 111 (186)
T cd01130 106 VGE-VRG 111 (186)
T ss_pred EEc-cCc
Confidence 999 543
No 421
>PF13245 AAA_19: Part of AAA domain
Probab=97.62 E-value=9.5e-05 Score=51.21 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=16.2
Q ss_pred ceEEECCCCCchHH-HHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSY-LAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~-la~~la~~~ 182 (330)
-+++.||||||||+ +++.++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 45669999999994 555555444
No 422
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00036 Score=63.56 Aligned_cols=24 Identities=46% Similarity=0.603 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|||||||.+.|++..
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCC
Confidence 458899999999999999999975
No 423
>PRK06547 hypothetical protein; Provisional
Probab=97.61 E-value=6.6e-05 Score=60.94 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=29.6
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW 199 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 199 (330)
+.-|++.|++|||||++++.++..+ +.+++ +..++...+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~--~~d~~~~~~ 53 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART-GFQLV--HLDDLYPGW 53 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh-CCCee--cccceeccc
Confidence 3578899999999999999999988 56655 444444433
No 424
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.61 E-value=0.0004 Score=58.76 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||+++|++.+
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3469999999999999999999876
No 425
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.61 E-value=0.00039 Score=65.82 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=56.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC--CcEEEe-cccchh-
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN--STFFSV-SSSDLV- 196 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~--~~~~~~-~~~~~~- 196 (330)
..+++++.-..+..+.+...+.. +..-++++||+||||||+..++...++. ..++.+ ++-++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~ 284 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI 284 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence 34666776667777777765521 1123789999999999999988887732 223332 111111
Q ss_pred ----ccccCh-hHHHHHHHHHHHHhcCCeEEEEeCCcch
Q psy3808 197 ----SKWLGE-SEKLVKTLFELARAHRPSIIFIDERIDR 230 (330)
Q Consensus 197 ----~~~~~~-~~~~~~~~f~~a~~~~~~ii~iDe~~~~ 230 (330)
...+.. ...........+....|.+|++.| +..
T Consensus 285 ~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGE-iRd 322 (486)
T TIGR02533 285 EGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGE-IRD 322 (486)
T ss_pred CCCceEEEccccCccHHHHHHHHHhcCCCEEEEeC-CCC
Confidence 100111 111233444555668999999999 543
No 426
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.61 E-value=0.0005 Score=62.60 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=42.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHhC----CCcEEEec-ccchh-----------ccccChhHHHHHHHHHHHHhcCCeEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEAN----NSTFFSVS-SSDLV-----------SKWLGESEKLVKTLFELARAHRPSIIF 223 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~----~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~f~~a~~~~~~ii~ 223 (330)
.++++||+||||||+++++...+. +..++.+- +.++. ...+|............+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 12333331 11211 011111111234455666668999999
Q ss_pred EeCCcc
Q psy3808 224 IDERID 229 (330)
Q Consensus 224 iDe~~~ 229 (330)
+.| +.
T Consensus 231 vGE-iR 235 (372)
T TIGR02525 231 VGE-IR 235 (372)
T ss_pred eCC-CC
Confidence 999 53
No 427
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.61 E-value=0.0014 Score=57.11 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=52.7
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhH
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESE 204 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (330)
-+++-.+++.+.+.+...- ...|..+.||.|.+||||+++++..|... +..++.+....-.+ ..+..
T Consensus 8 m~lVlf~~ai~hi~ri~Rv----------L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~-~~~~~~i~~~~~y~--~~~f~ 74 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRV----------LSQPRGHALLVGVGGSGRQSLARLAAFIC-GYEVFQIEITKGYS--IKDFK 74 (268)
T ss_dssp ------HHHHHHHHHHHHH----------HCSTTEEEEEECTTTSCHHHHHHHHHHHT-TEEEE-TTTSTTTH--HHHHH
T ss_pred cceeeHHHHHHHHHHHHHH----------HcCCCCCeEEecCCCccHHHHHHHHHHHh-ccceEEEEeeCCcC--HHHHH
Confidence 3577778888887765522 12344689999999999999999888776 77787776543111 12223
Q ss_pred HHHHHHHHHHH-hcCCeEEEEeC
Q psy3808 205 KLVKTLFELAR-AHRPSIIFIDE 226 (330)
Q Consensus 205 ~~~~~~f~~a~-~~~~~ii~iDe 226 (330)
..++.++..+- ...|.++++.|
T Consensus 75 ~dLk~~~~~ag~~~~~~vfll~d 97 (268)
T PF12780_consen 75 EDLKKALQKAGIKGKPTVFLLTD 97 (268)
T ss_dssp HHHHHHHHHHHCS-S-EEEEEEC
T ss_pred HHHHHHHHHHhccCCCeEEEecC
Confidence 44555555444 45677888876
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.61 E-value=0.00054 Score=57.73 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.2
Q ss_pred cceEEECCCCCchHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~ 180 (330)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999983
No 429
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.61 E-value=0.00047 Score=61.06 Aligned_cols=46 Identities=26% Similarity=0.445 Sum_probs=32.0
Q ss_pred HHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 213 LARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 213 ~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
.+..+.|.++++|| .+|......+..++..+..... ..|+.+|-.+
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l 197 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHIL 197 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcH
Confidence 33447899999999 7788888888888887766533 4444466443
No 430
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.61 E-value=0.00044 Score=68.70 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=56.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--C--CcEEEecccchh----ccccChhHHHHHHHHHHH----------HhcCCe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--N--STFFSVSSSDLV----SKWLGESEKLVKTLFELA----------RAHRPS 220 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--~--~~~~~~~~~~~~----~~~~~~~~~~~~~~f~~a----------~~~~~~ 220 (330)
+-++|.|+||||||++++++...+. + .+++-+.+..-. ....|.....++.++... ......
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 3589999999999999999987662 2 334433332211 111122223334333211 012457
Q ss_pred EEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 221 IIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 221 ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
+|+||| ........+..++..+. ...+++++|=.+....+
T Consensus 419 llIvDE-aSMvd~~~~~~Ll~~~~-~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 419 LLIVDE-SSMMDTWLALSLLAALP-DHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEEec-cccCCHHHHHHHHHhCC-CCCEEEEECccccccCC
Confidence 999999 55444455555555543 33567777766554433
No 431
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.60 E-value=0.00039 Score=63.68 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.++||+..
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999865
No 432
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.60 E-value=0.00061 Score=57.63 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=27.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
.-++++||||||||+++..+|... .+.+++.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 458899999999999999999776 24456666553
No 433
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0015 Score=59.08 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 129 GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 129 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
+.+++...+.+.+...+..+..+. ..+++-++|.||+|+||||++..+|..+ .+..+..++++
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 346667777776655444333222 1234579999999999999999999766 33344444443
No 434
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.59 E-value=0.00055 Score=57.44 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999999875
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.59 E-value=0.00041 Score=61.93 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=43.9
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCC-CcEEEec-ccchhc---cc----c-----ChhHHHHHHHHHHHHhcCCeEEE
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANN-STFFSVS-SSDLVS---KW----L-----GESEKLVKTLFELARAHRPSIIF 223 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~-~~~~~~---~~----~-----~~~~~~~~~~f~~a~~~~~~ii~ 223 (330)
..++++.||+|+||||++++++..++. ..++.+. ..++.- .+ . +...-....++..+....|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 358999999999999999999988721 1222221 111110 00 0 11112345566667778999999
Q ss_pred EeCCcc
Q psy3808 224 IDERID 229 (330)
Q Consensus 224 iDe~~~ 229 (330)
+|| ..
T Consensus 224 ~gE-~r 228 (308)
T TIGR02788 224 LGE-LR 228 (308)
T ss_pred Eec-cC
Confidence 999 44
No 436
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.59 E-value=0.00089 Score=54.99 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.2
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
|.+.|+|||||||+|+.++..+.+..++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 5788999999999999999998444443
No 437
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.59 E-value=0.00054 Score=56.26 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.5
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999875
No 438
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.58 E-value=0.00025 Score=60.39 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=29.4
Q ss_pred CCCCC-cceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc
Q psy3808 154 KRVPW-KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS 193 (330)
Q Consensus 154 ~~~~~-~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~ 193 (330)
++.|. .-++++||||+|||+++..++... .+..++.++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34443 458999999999999999999755 34556666665
No 439
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.58 E-value=0.00028 Score=62.54 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=45.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC----CcEEEec-ccchh-------ccccChhHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN----STFFSVS-SSDLV-------SKWLGESEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~----~~~~~~~-~~~~~-------~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
.++++.||+|+||||++++++..++. ..++.+- ..++. .-...........+...+..+.|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 57999999999999999999988721 2222221 11111 000111111455677777778999999999
Q ss_pred Ccch
Q psy3808 227 RIDR 230 (330)
Q Consensus 227 ~~~~ 230 (330)
+-.
T Consensus 213 -iR~ 215 (299)
T TIGR02782 213 -VRG 215 (299)
T ss_pred -cCC
Confidence 543
No 440
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.58 E-value=0.00043 Score=63.00 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|||||||.+.|+...
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999875
No 441
>KOG0477|consensus
Probab=97.58 E-value=5.9e-05 Score=70.80 Aligned_cols=54 Identities=31% Similarity=0.371 Sum_probs=36.0
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCC--CCCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKR--VPWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
|.|..++|..+.-++.-.. +..-.... ..--++||+|.||||||-+.+.+++..
T Consensus 451 IyGh~~VK~AvAlaLfGGv--~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGV--PKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred hhchHHHHHHHHHHHhcCC--ccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC
Confidence 6788888888876553222 11111100 111369999999999999999999876
No 442
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.58 E-value=0.0005 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
+..+++||.|+|||++.++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987554
No 443
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.58 E-value=5.2e-05 Score=68.70 Aligned_cols=44 Identities=39% Similarity=0.521 Sum_probs=36.7
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
.+++|..-.+.+++.|.+.. .|+|+.||||+||||+|+|+|..+
T Consensus 244 ~~ledY~L~dkl~eRL~era-----------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 244 LSLEDYGLSDKLKERLEERA-----------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred echhhcCCCHHHHHHHHhhh-----------------cceEEecCCCCChhHHHHHHHHHH
Confidence 45666666777888877644 699999999999999999999987
No 444
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.58 E-value=8.4e-05 Score=60.45 Aligned_cols=33 Identities=33% Similarity=0.681 Sum_probs=28.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
..|+|.||+|+|||++++.++..+ +.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc-CCcEEECCc
Confidence 469999999999999999999998 778776553
No 445
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00054 Score=58.08 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.+++..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999875
No 446
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.57 E-value=0.00018 Score=67.36 Aligned_cols=70 Identities=29% Similarity=0.443 Sum_probs=46.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccc------cCh--------hHHHHHHHHHHHHhcCCe
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKW------LGE--------SEKLVKTLFELARAHRPS 220 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~------~~~--------~~~~~~~~f~~a~~~~~~ 220 (330)
+..-++|+||||+|||+|+..++... .+..+++++..+..... .|. .+..+..++.......|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 33458999999999999999999876 24566666664432211 010 011234555666667889
Q ss_pred EEEEeC
Q psy3808 221 IIFIDE 226 (330)
Q Consensus 221 ii~iDe 226 (330)
+|+||.
T Consensus 159 lVVIDS 164 (446)
T PRK11823 159 LVVIDS 164 (446)
T ss_pred EEEEec
Confidence 999999
No 447
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.57 E-value=0.00054 Score=58.75 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.|++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999999865
No 448
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.57 E-value=6.1e-05 Score=59.76 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.1
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.++++|+|||||||+++.++ .+ |...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l-g~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL-GYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh-CCceeeHH
Confidence 48899999999999999999 77 66665544
No 449
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.56 E-value=0.001 Score=55.69 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++.+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999999875
No 450
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.56 E-value=0.00084 Score=55.77 Aligned_cols=26 Identities=31% Similarity=0.338 Sum_probs=22.9
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.+++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999999975
No 451
>PRK10436 hypothetical protein; Provisional
Probab=97.56 E-value=0.00062 Score=63.86 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=55.7
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC--CcEEEe-cccchh--
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN--STFFSV-SSSDLV-- 196 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~--~~~~~~-~~~~~~-- 196 (330)
.++++++-.....+.+.+.+.. +..-+|++||+|+||||+..++...+.. ..++.+ ++-++.
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~ 261 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLA 261 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCC
Confidence 4667777777777777776632 2235899999999999999888777722 223222 111111
Q ss_pred ---ccccC-hhHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 197 ---SKWLG-ESEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 197 ---~~~~~-~~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
...++ ............+....|.+|+|.|
T Consensus 262 gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGE 295 (462)
T PRK10436 262 GINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGE 295 (462)
T ss_pred CcceEeeCCccCcCHHHHHHHHhcCCCCEEEECC
Confidence 00011 1112244455566668999999999
No 452
>PRK14527 adenylate kinase; Provisional
Probab=97.56 E-value=0.00062 Score=56.34 Aligned_cols=35 Identities=34% Similarity=0.656 Sum_probs=27.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
.-++++||||+||||+|+.++..+ +.+ .++..++.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~-~~~--~is~gd~~ 41 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL-GLK--KLSTGDIL 41 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCC--CCCccHHH
Confidence 469999999999999999999988 443 34554443
No 453
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.55 E-value=0.00034 Score=58.37 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=30.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW 199 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 199 (330)
|.-+++.|+||+|||+++..+...+.+..++.++++.+....
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 356899999999999999999988733567778888876543
No 454
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.55 E-value=0.0012 Score=64.53 Aligned_cols=150 Identities=22% Similarity=0.303 Sum_probs=85.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHh-CCCcEEEecccchhc--------------ccc---Chh-------------HHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA-NNSTFFSVSSSDLVS--------------KWL---GES-------------EKLV 207 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~-~~~~~~~~~~~~~~~--------------~~~---~~~-------------~~~~ 207 (330)
+-++|+.|.|.||||++-.++... ++..+..++.++-.+ .+. ++. ...+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999997633 344444444432111 111 111 1233
Q ss_pred HHHHH-HHHhcCCeEEEEeCCcc----hhhHHHHHHHHhcCCCCCCcEEEEecC-CCC-CCcCHHHHhccccEEEec---
Q psy3808 208 KTLFE-LARAHRPSIIFIDERID----RGISNALFLLLSGVGNDMDGILVLGAT-NIP-WVLDAAIRRRFEKRIYIA--- 277 (330)
Q Consensus 208 ~~~f~-~a~~~~~~ii~iDe~~~----~~~~~~l~~~l~~~~~~~~~v~vi~tt-n~~-~~l~~~l~~Rf~~~i~~~--- 277 (330)
..+|. .+....|..+|||+ .+ ..+...+..+++... +++.+|.+| ++| ..+..--.+ +..+.+.
T Consensus 118 ~~L~~Ela~~~~pl~LVlDD-yHli~~~~l~~~l~fLl~~~P---~~l~lvv~SR~rP~l~la~lRlr--~~llEi~~~~ 191 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDD-YHLISDPALHEALRFLLKHAP---ENLTLVVTSRSRPQLGLARLRLR--DELLEIGSEE 191 (894)
T ss_pred HHHHHHHHhhcCceEEEecc-ccccCcccHHHHHHHHHHhCC---CCeEEEEEeccCCCCcccceeeh--hhHHhcChHh
Confidence 44443 45567899999999 43 444555555555532 456666566 333 222221111 1112221
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHH
Q psy3808 278 -LPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGA 317 (330)
Q Consensus 278 -~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~ 317 (330)
..+.++-.+++... .+..++..+++.|-..|+||..+
T Consensus 192 Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 192 LRFDTEEAAAFLNDR---GSLPLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred hcCChHHHHHHHHHc---CCCCCChHHHHHHHhhcccHHHH
Confidence 13456666666543 23567888999999999999764
No 455
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.55 E-value=0.00024 Score=64.85 Aligned_cols=70 Identities=29% Similarity=0.419 Sum_probs=45.4
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccc------cCh--------hHHHHHHHHHHHHhcCCe
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKW------LGE--------SEKLVKTLFELARAHRPS 220 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~------~~~--------~~~~~~~~f~~a~~~~~~ 220 (330)
+..-++|+|+||+|||+++..++..+ .+..+++++..+..... .+. .+..+..+........|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 33568999999999999999998776 22456666554321110 010 112344566666667899
Q ss_pred EEEEeC
Q psy3808 221 IIFIDE 226 (330)
Q Consensus 221 ii~iDe 226 (330)
+|+||+
T Consensus 161 lVVIDS 166 (372)
T cd01121 161 LVIIDS 166 (372)
T ss_pred EEEEcc
Confidence 999999
No 456
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.55 E-value=9.6e-05 Score=60.00 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=27.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
..++|.|+||||||++++.+|..+ +.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l-g~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL-GYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEcc
Confidence 368999999999999999999999 78877543
No 457
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.55 E-value=0.00045 Score=60.23 Aligned_cols=84 Identities=24% Similarity=0.363 Sum_probs=44.6
Q ss_pred ceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh-c--ccc-ChhHHHHHHHH----HHHHhcCCeEEEEeC-Cc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV-S--KWL-GESEKLVKTLF----ELARAHRPSIIFIDE-RI 228 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~f----~~a~~~~~~ii~iDe-~~ 228 (330)
-|+|+|.||||||++|+.|+..+ .+..+..++...+. . .|. ...++..+..+ ..+. ....||++|+ ..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCch
Confidence 38899999999999999999986 34456666654443 1 121 12244444333 2222 2346889999 12
Q ss_pred chhhHHHHHHHHhcCC
Q psy3808 229 DRGISNALFLLLSGVG 244 (330)
Q Consensus 229 ~~~~~~~l~~~l~~~~ 244 (330)
-++..-.+..+.....
T Consensus 82 iKg~RYelyclAr~~~ 97 (270)
T PF08433_consen 82 IKGMRYELYCLARAYG 97 (270)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2555556665555443
No 458
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00069 Score=57.42 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.2
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.|++.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999865
No 459
>PRK14528 adenylate kinase; Provisional
Probab=97.54 E-value=9.1e-05 Score=61.07 Aligned_cols=33 Identities=33% Similarity=0.626 Sum_probs=26.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.+++.||||+|||++++.++..+ +.+.+ +..++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~-~~~~i--s~~~~ 35 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL-SIPQI--STGDI 35 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCee--eCCHH
Confidence 58999999999999999999988 55554 44444
No 460
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.54 E-value=0.0004 Score=69.29 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=53.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccc----cChhHHHHHHHH-HHHH----hcCCeEEEEeCCc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKW----LGESEKLVKTLF-ELAR----AHRPSIIFIDERI 228 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~f-~~a~----~~~~~ii~iDe~~ 228 (330)
-++|.|+||||||++++++...+ .|..++.+.++.....- .|.....+..+. .... .....+|+||| .
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDE-a 448 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDE-A 448 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEEC-c
Confidence 57899999999999999998665 24556555554332211 111112222221 1111 12457999999 5
Q ss_pred chhhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 229 DRGISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
.......+..++.........++++|=.
T Consensus 449 sMv~~~~~~~Ll~~~~~~~~kliLVGD~ 476 (744)
T TIGR02768 449 GMVGSRQMARVLKEAEEAGAKVVLVGDP 476 (744)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEECCh
Confidence 5444444445554333333557777633
No 461
>PRK13946 shikimate kinase; Provisional
Probab=97.54 E-value=8.1e-05 Score=61.26 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=28.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
+.|+|.|+||||||++++.+|..+ |.+|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L-g~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML-GLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-CCCeECcC
Confidence 579999999999999999999999 78887554
No 462
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.54 E-value=0.00069 Score=56.74 Aligned_cols=25 Identities=40% Similarity=0.365 Sum_probs=22.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||.+.+++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999865
No 463
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.54 E-value=0.00065 Score=57.60 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.|++.+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999875
No 464
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00058 Score=62.66 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|||||||.+.||+..
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468899999999999999999865
No 465
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.53 E-value=0.00045 Score=54.72 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=26.7
Q ss_pred eEEECCCCCchHHHHHHHHHHhC--CCcEEEecccch
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDL 195 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~ 195 (330)
++|.|+||||||++|+.++..+. +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 68999999999999999999882 334555554433
No 466
>PRK06696 uridine kinase; Validated
Probab=97.53 E-value=0.0002 Score=60.90 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=30.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLV 196 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~ 196 (330)
.-|.+.|++||||||+|+.|+..++ |.+++.++.+++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4689999999999999999999983 4467777766653
No 467
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00061 Score=58.29 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.+++.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33569999999999999999999876
No 468
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.53 E-value=0.00076 Score=54.54 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=25.1
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
++++||+|||||++|..++... +.+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-GGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-CCCeEEEEc
Confidence 6899999999999999999875 455555544
No 469
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.52 E-value=6.9e-05 Score=57.47 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.8
Q ss_pred eEEECCCCCchHHHHHHHHHHh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~ 182 (330)
|+|.|+|||||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 470
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.52 E-value=0.00067 Score=60.54 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=44.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh----CCCcEEEec-ccchhcc------ccChhHHHHHHHHHHHHhcCCeEEEEeCC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVS-SSDLVSK------WLGESEKLVKTLFELARAHRPSIIFIDER 227 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~f~~a~~~~~~ii~iDe~ 227 (330)
.++++.|++||||||++++++..+ ++..++.+- ..++.-. +.....-....+...+....|..|++.|
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE- 223 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE- 223 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee-
Confidence 479999999999999999999876 122233221 1222110 0011112345666777779999999999
Q ss_pred cch
Q psy3808 228 IDR 230 (330)
Q Consensus 228 ~~~ 230 (330)
+-.
T Consensus 224 iRg 226 (323)
T PRK13833 224 VRD 226 (323)
T ss_pred cCC
Confidence 543
No 471
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.52 E-value=0.00023 Score=59.03 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=51.8
Q ss_pred eEEECCCCCchHHHHHHH-HHH-h-CCCcEEEecccchh----ccccChh-HH------------HHHHHHHHHHhcCCe
Q psy3808 161 ILLFGPPGTGKSYLAKAV-ATE-A-NNSTFFSVSSSDLV----SKWLGES-EK------------LVKTLFELARAHRPS 220 (330)
Q Consensus 161 ill~GppGtGKT~la~~l-a~~-~-~~~~~~~~~~~~~~----~~~~~~~-~~------------~~~~~f~~a~~~~~~ 220 (330)
.+++|.||+|||+.|-.. ... + .|.+++. +...+. ....+.. .. ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999877554 322 2 3455443 332111 1110100 00 001111111112568
Q ss_pred EEEEeCCcch----h-----hHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCC
Q psy3808 221 IIFIDERIDR----G-----ISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALP 279 (330)
Q Consensus 221 ii~iDe~~~~----~-----~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p 279 (330)
+|+||| ... . ........+.... ..++-||.+|-.|..+|+.+++..+..+.+..+
T Consensus 82 liviDE-a~~~~~~r~~~~~~~~~~~~~l~~hR--h~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDE-AQNFFPSRSWKGKKVPEIIEFLAQHR--HYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETT-GGGTSB---T-T----HHHHGGGGCC--CTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEEC-ChhhcCCCccccccchHHHHHHHHhC--cCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 999999 321 1 1122334444433 245677778888899999998877766666544
No 472
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.51 E-value=0.0001 Score=60.77 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=26.3
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
-+++.|||||||||+++.++..+ |... ++.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~-g~~~--~~~g~~ 37 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY-GFTH--LSTGDL 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcE--EeHHHH
Confidence 58899999999999999999988 5443 444443
No 473
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.51 E-value=0.0026 Score=49.91 Aligned_cols=67 Identities=27% Similarity=0.304 Sum_probs=43.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhH--------HHH---HHHHHHHHhcCCeEEEEeC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESE--------KLV---KTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~f~~a~~~~~~ii~iDe 226 (330)
+.|.|.||-.||||+||+.+|+.+ +.++...-..+++-...+..+ +.. ...-+.+..+++.|+|||-
T Consensus 9 K~VailG~ESsGKStLv~kLA~~f-nt~~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av~~a~~v~fiDT 86 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIF-NTTSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYANKVAFIDT 86 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHh-CCCchhHHHHHHHHHHhCCchhhhhccHHHHHhhhHHHHHHHHhCCCceEEEec
Confidence 578999999999999999999999 565544333333222222221 111 1223455667788999997
No 474
>PRK04328 hypothetical protein; Provisional
Probab=97.51 E-value=0.0011 Score=57.34 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=25.2
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
...++++||||||||+++..++... .|.+.+.++.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4568999999999999988876542 3445554444
No 475
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00076 Score=56.84 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.+++.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999865
No 476
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00076 Score=58.57 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3569999999999999999999875
No 477
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.51 E-value=0.00069 Score=56.80 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=30.1
Q ss_pred HHHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEec
Q psy3808 211 FELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGA 255 (330)
Q Consensus 211 f~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~t 255 (330)
+..|....|.+||+|| ..|......+..++..+....+-+.++.|
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VT 203 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVT 203 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEE
Confidence 3444456899999999 66777777777777766655454444434
No 478
>PRK02496 adk adenylate kinase; Provisional
Probab=97.51 E-value=9.6e-05 Score=60.82 Aligned_cols=28 Identities=29% Similarity=0.581 Sum_probs=24.3
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
.++|.||||||||++++.++..+ +.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~-~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL-HIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEE
Confidence 48999999999999999999988 55544
No 479
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.51 E-value=0.0005 Score=56.77 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=63.3
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhH---HHHHHHHHHHHhcCCe--------EEEEeC---
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESE---KLVKTLFELARAHRPS--------IIFIDE--- 226 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~a~~~~~~--------ii~iDe--- 226 (330)
|.|+|++|||||++++.++... +.++ ++++.+......... ..+...|........+ -+++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~~~-~~~~--i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~ 78 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKY-HFPV--IDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEE 78 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-CCeE--EeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHH
Confidence 6899999999999999999875 4554 455555433222211 1222223211100000 001111
Q ss_pred ------CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHH
Q psy3808 227 ------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFR 289 (330)
Q Consensus 227 ------~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~ 289 (330)
.++..+...+...+...... ..++++.+....+ ..+...|+.++.+..|......++..
T Consensus 79 ~~~le~ilhP~i~~~i~~~i~~~~~~-~~~vvi~~pll~e---~~~~~~~D~vv~V~~~~~~~~~Rl~~ 143 (188)
T TIGR00152 79 LKWLNNLLHPLIREWMKKLLAQFQSK-LAYVLLDVPLLFE---NKLRSLCDRVIVVDVSPQLQLERLMQ 143 (188)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhhcC-CCEEEEEchHhhh---CCcHHhCCEEEEEECCHHHHHHHHHH
Confidence 23444445555555443222 2355554432212 23455788889999887766666655
No 480
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.50 E-value=0.00076 Score=57.58 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++++++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33569999999999999999999875
No 481
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.50 E-value=0.0028 Score=58.86 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=43.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh---CCCcEEEecccchhcc----------------cc---Ch-hHHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA---NNSTFFSVSSSDLVSK----------------WL---GE-SEKLVKTLFELA 214 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~---~~~~~~~~~~~~~~~~----------------~~---~~-~~~~~~~~f~~a 214 (330)
+.-+++.||+|+||||++..+|..+ .+..+..++++.+... +. +. ...........+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988888774 2445555555432110 00 01 123334455555
Q ss_pred HhcCCeEEEEeC
Q psy3808 215 RAHRPSIIFIDE 226 (330)
Q Consensus 215 ~~~~~~ii~iDe 226 (330)
......+|+||-
T Consensus 179 ~~~~~DvVIIDT 190 (428)
T TIGR00959 179 KENGFDVVIVDT 190 (428)
T ss_pred HhcCCCEEEEeC
Confidence 556677999998
No 482
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.50 E-value=0.006 Score=54.47 Aligned_cols=47 Identities=6% Similarity=-0.067 Sum_probs=30.8
Q ss_pred EEEecCCCHHHHHHHHHHHhcCCCCC---CChHhHHHHHHHcCCCCHHHHH
Q psy3808 273 RIYIALPELNARLFMFRHHLGNTRNT---ISDENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 273 ~i~~~~p~~~~r~~il~~~l~~~~~~---~~~~~~~~la~~~~g~~~~di~ 320 (330)
.+.++..+.++-..+++.+....-.. .++.....+...+. .+++++.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~-GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN-GNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-CCHHHhc
Confidence 68999999999999999887665432 23334444544444 4555553
No 483
>PRK04040 adenylate kinase; Provisional
Probab=97.50 E-value=0.00012 Score=60.37 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=27.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.-++++|+|||||||+++.++..++ ..+..++.+++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~ 38 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDV 38 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchH
Confidence 4689999999999999999999984 12333444444
No 484
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.0009 Score=57.23 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.4
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||.+.+++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999976
No 485
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.50 E-value=0.0011 Score=56.40 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=22.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++++++..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34569999999999999999999865
No 486
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.0011 Score=55.76 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=22.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+=|.|++|+|||||.+.|++.+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCcc
Confidence 458999999999999999999987
No 487
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.50 E-value=0.00073 Score=60.40 Aligned_cols=72 Identities=21% Similarity=0.420 Sum_probs=45.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHh----CCCcEEEe-cccchh---cc---ccChhHHHHHHHHHHHHhcCCeEEEEeCC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA----NNSTFFSV-SSSDLV---SK---WLGESEKLVKTLFELARAHRPSIIFIDER 227 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~----~~~~~~~~-~~~~~~---~~---~~~~~~~~~~~~f~~a~~~~~~ii~iDe~ 227 (330)
.++++.||+||||||++++++... +...++.+ +..++. .. +..........++..+....|..|++.|
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE- 227 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE- 227 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec-
Confidence 579999999999999999999874 11222221 111111 00 0111122355677777789999999999
Q ss_pred cchh
Q psy3808 228 IDRG 231 (330)
Q Consensus 228 ~~~~ 231 (330)
+-..
T Consensus 228 iR~~ 231 (319)
T PRK13894 228 VRGP 231 (319)
T ss_pred cCCH
Confidence 5433
No 488
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.49 E-value=0.00092 Score=57.90 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=22.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.|++.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33569999999999999999999875
No 489
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.49 E-value=0.0006 Score=58.86 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.|++.+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999875
No 490
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.49 E-value=0.00097 Score=56.19 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.+++.+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999875
No 491
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00088 Score=57.32 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.|++.+
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999865
No 492
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00067 Score=62.15 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|||||||++.|++..
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999875
No 493
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.47 E-value=0.0011 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.2
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3568999999999999999999865
No 494
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.47 E-value=0.001 Score=65.65 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHHhcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecC
Q psy3808 212 ELARAHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIAL 278 (330)
Q Consensus 212 ~~a~~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~ 278 (330)
..+.-.+|.|+++|| .+|......+...+..+... +++|+.| - .+...+++++++.+..
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~--~T~I~Ia-H-----Rl~ti~~adrIiVl~~ 682 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQG--RTVIIIA-H-----RLSTIRSADRIIVLDQ 682 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcC--CeEEEEE-c-----cchHhhhccEEEEccC
Confidence 334447899999999 66777777666666665432 3344323 2 2455667777766654
No 495
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.46 E-value=0.0008 Score=65.08 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=57.2
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC--cEEEec-ccc----
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--TFFSVS-SSD---- 194 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--~~~~~~-~~~---- 194 (330)
.++++++-..+..+.+.+.+.. +...++++||+||||||+..++...++.. .++.+- +-+
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~ 359 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLP 359 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCC
Confidence 4667777777777777776632 21347899999999999998888887322 232211 111
Q ss_pred -hhccccC-hhHHHHHHHHHHHHhcCCeEEEEeCCcc
Q psy3808 195 -LVSKWLG-ESEKLVKTLFELARAHRPSIIFIDERID 229 (330)
Q Consensus 195 -~~~~~~~-~~~~~~~~~f~~a~~~~~~ii~iDe~~~ 229 (330)
+....+. ............+....|.+|++.| +.
T Consensus 360 ~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGE-iR 395 (564)
T TIGR02538 360 GINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGE-IR 395 (564)
T ss_pred CceEEEeccccCCCHHHHHHHHhccCCCEEEeCC-CC
Confidence 1111011 1112244555666678999999999 54
No 496
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00093 Score=58.84 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||+++|++.+
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999875
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.46 E-value=0.0011 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999875
No 498
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.46 E-value=0.0011 Score=55.84 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++++++.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999876
No 499
>PTZ00202 tuzin; Provisional
Probab=97.46 E-value=0.0098 Score=54.82 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=46.0
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
....+++|.+.....|...+... .... ++-+.|+||+|||||++++.+...+ +.+.+.+++.
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~--------d~~~-privvLtG~~G~GKTTLlR~~~~~l-~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL--------DTAH-PRIVVFTGFRGCGKSSLCRSAVRKE-GMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc--------CCCC-ceEEEEECCCCCCHHHHHHHHHhcC-CceEEEECCC
Confidence 34568999999999998877321 0112 2468899999999999999999988 5666666664
No 500
>PRK13808 adenylate kinase; Provisional
Probab=97.46 E-value=0.00092 Score=59.68 Aligned_cols=34 Identities=29% Similarity=0.639 Sum_probs=27.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
.|+|+||||+|||++++.|+..+ +. ..++..+++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y-gl--~~is~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY-GI--VQLSTGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CC--ceecccHHH
Confidence 48999999999999999999998 54 445555544
Done!