Query psy3808
Match_columns 330
No_of_seqs 344 out of 2934
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 17:57:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zan_A Vacuolar protein sortin 100.0 2.7E-53 9.2E-58 395.2 17.9 325 3-328 7-350 (444)
2 4b4t_J 26S protease regulatory 100.0 1.4E-46 4.9E-51 338.6 22.0 213 112-328 135-367 (405)
3 4b4t_I 26S protease regulatory 100.0 2.6E-45 9E-50 331.0 18.0 210 115-328 172-401 (437)
4 4b4t_H 26S protease regulatory 100.0 1E-44 3.4E-49 330.3 20.6 209 116-328 200-428 (467)
5 4b4t_L 26S protease subunit RP 100.0 7.5E-45 2.6E-49 332.6 18.1 213 112-328 168-400 (437)
6 4b4t_M 26S protease regulatory 100.0 7.4E-45 2.5E-49 332.3 17.8 210 115-328 171-400 (434)
7 4b4t_K 26S protease regulatory 100.0 8E-44 2.7E-48 325.4 20.2 210 115-328 162-392 (428)
8 3cf2_A TER ATPase, transitiona 100.0 6.2E-41 2.1E-45 326.6 14.5 210 115-328 467-696 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 5E-39 1.7E-43 287.3 24.3 214 115-329 2-229 (322)
10 2qp9_X Vacuolar protein sortin 100.0 6.7E-39 2.3E-43 290.2 21.4 225 103-329 29-267 (355)
11 3eie_A Vacuolar protein sortin 100.0 6.7E-38 2.3E-42 280.5 22.8 213 114-328 7-233 (322)
12 3cf2_A TER ATPase, transitiona 100.0 2.3E-38 7.7E-43 308.7 16.2 207 118-328 197-420 (806)
13 3cf0_A Transitional endoplasmi 100.0 4E-35 1.4E-39 259.9 16.5 210 115-328 5-234 (301)
14 2x8a_A Nuclear valosin-contain 100.0 1.7E-34 5.8E-39 252.0 17.8 208 118-328 3-231 (274)
15 3vfd_A Spastin; ATPase, microt 100.0 6.8E-34 2.3E-38 261.0 20.8 219 108-328 98-331 (389)
16 3b9p_A CG5977-PA, isoform A; A 100.0 2.4E-33 8.3E-38 248.3 22.4 217 110-328 6-238 (297)
17 3d8b_A Fidgetin-like protein 1 100.0 3.8E-33 1.3E-37 252.9 22.3 219 108-328 67-300 (357)
18 2ce7_A Cell division protein F 100.0 5.5E-32 1.9E-36 251.3 20.7 205 119-328 10-234 (476)
19 3h4m_A Proteasome-activating n 100.0 1.5E-31 5.1E-36 235.3 19.4 209 117-328 9-236 (285)
20 1lv7_A FTSH; alpha/beta domain 100.0 4.5E-31 1.5E-35 228.9 20.2 208 116-328 3-230 (257)
21 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6.6E-31 2.3E-35 228.3 21.1 206 120-329 1-228 (262)
22 3hu3_A Transitional endoplasmi 100.0 5.5E-31 1.9E-35 246.5 16.6 205 120-328 199-420 (489)
23 2dhr_A FTSH; AAA+ protein, hex 100.0 7.1E-30 2.4E-34 238.4 17.5 205 119-328 25-249 (499)
24 1ixz_A ATP-dependent metallopr 100.0 1.9E-29 6.6E-34 218.2 18.7 209 115-328 6-234 (254)
25 2r62_A Cell division protease 100.0 1.1E-31 3.8E-36 234.1 1.2 208 117-328 3-231 (268)
26 1iy2_A ATP-dependent metallopr 100.0 4.1E-28 1.4E-32 212.6 21.1 208 116-328 31-258 (278)
27 1ypw_A Transitional endoplasmi 100.0 3.4E-31 1.2E-35 262.2 -1.4 209 116-328 468-696 (806)
28 1ypw_A Transitional endoplasmi 99.9 2.2E-26 7.6E-31 227.8 16.5 207 118-328 197-420 (806)
29 3t15_A Ribulose bisphosphate c 99.9 1.7E-26 5.7E-31 203.5 10.8 157 156-321 34-222 (293)
30 3syl_A Protein CBBX; photosynt 99.9 1.1E-23 3.9E-28 187.0 11.1 195 126-328 32-260 (309)
31 2c9o_A RUVB-like 1; hexameric 99.9 2.5E-25 8.4E-30 207.9 -3.4 187 119-325 31-262 (456)
32 3uk6_A RUVB-like 2; hexameric 99.9 3.3E-22 1.1E-26 181.9 16.4 201 119-328 38-308 (368)
33 3pfi_A Holliday junction ATP-d 99.9 9.3E-21 3.2E-25 170.4 19.4 194 115-326 19-230 (338)
34 1hqc_A RUVB; extended AAA-ATPa 99.8 1.6E-20 5.5E-25 167.7 16.1 193 118-327 5-215 (324)
35 3pxg_A Negative regulator of g 99.8 7.5E-21 2.6E-25 177.9 12.9 192 112-326 167-381 (468)
36 1ofh_A ATP-dependent HSL prote 99.8 7E-21 2.4E-25 168.9 12.1 200 126-327 16-270 (310)
37 3m6a_A ATP-dependent protease 99.8 1E-20 3.5E-25 179.8 12.5 195 123-327 79-316 (543)
38 3u61_B DNA polymerase accessor 99.8 4E-20 1.4E-24 165.2 15.4 186 114-323 15-217 (324)
39 2chg_A Replication factor C sm 99.8 2.1E-19 7.3E-24 151.2 17.1 187 116-326 8-207 (226)
40 1d2n_A N-ethylmaleimide-sensit 99.8 5.5E-20 1.9E-24 160.3 13.2 165 156-327 62-246 (272)
41 1l8q_A Chromosomal replication 99.8 3.7E-19 1.3E-23 159.0 17.1 192 119-326 5-211 (324)
42 3hws_A ATP-dependent CLP prote 99.8 1.6E-19 5.5E-24 163.9 13.8 200 127-328 17-320 (363)
43 1njg_A DNA polymerase III subu 99.8 2.3E-19 7.7E-24 153.0 13.3 190 116-328 14-233 (250)
44 2chq_A Replication factor C sm 99.8 6.1E-19 2.1E-23 156.9 15.3 192 115-322 7-204 (319)
45 4fcw_A Chaperone protein CLPB; 99.8 4.8E-19 1.7E-23 157.2 14.0 199 126-328 18-276 (311)
46 3pxi_A Negative regulator of g 99.8 4.9E-19 1.7E-23 175.3 15.0 192 112-326 167-381 (758)
47 3pvs_A Replication-associated 99.8 8E-19 2.7E-23 162.7 14.8 184 116-327 17-219 (447)
48 1sxj_D Activator 1 41 kDa subu 99.8 1E-18 3.6E-23 157.7 15.2 187 114-323 26-236 (353)
49 2z4s_A Chromosomal replication 99.8 1.3E-18 4.3E-23 161.5 15.9 195 119-327 99-310 (440)
50 1jbk_A CLPB protein; beta barr 99.8 5.1E-19 1.8E-23 145.4 11.8 153 117-288 14-194 (195)
51 3pxi_A Negative regulator of g 99.8 4.5E-19 1.5E-23 175.6 13.5 196 125-328 491-722 (758)
52 1iqp_A RFCS; clamp loader, ext 99.8 1.7E-18 5.8E-23 154.6 14.7 192 114-325 14-214 (327)
53 1sxj_A Activator 1 95 kDa subu 99.8 9.2E-19 3.1E-23 165.8 13.4 203 113-322 27-252 (516)
54 1sxj_B Activator 1 37 kDa subu 99.8 2.4E-18 8.3E-23 153.3 14.9 185 115-322 11-209 (323)
55 1jr3_A DNA polymerase III subu 99.8 3.3E-18 1.1E-22 155.6 14.9 191 116-326 7-224 (373)
56 1r6b_X CLPA protein; AAA+, N-t 99.8 1.5E-18 5E-23 172.1 13.4 197 125-328 458-713 (758)
57 1g41_A Heat shock protein HSLU 99.8 3E-18 1E-22 156.9 14.2 183 126-310 16-380 (444)
58 1sxj_E Activator 1 40 kDa subu 99.8 3.7E-18 1.3E-22 154.3 14.3 189 115-322 4-237 (354)
59 1r6b_X CLPA protein; AAA+, N-t 99.8 3.2E-18 1.1E-22 169.6 14.5 195 117-326 178-405 (758)
60 3bos_A Putative DNA replicatio 99.8 1.2E-17 4.2E-22 142.3 16.2 183 120-327 23-221 (242)
61 1um8_A ATP-dependent CLP prote 99.8 5.9E-18 2E-22 154.3 14.3 201 126-328 22-337 (376)
62 1qvr_A CLPB protein; coiled co 99.7 7.5E-18 2.6E-22 168.6 14.3 194 115-327 160-389 (854)
63 1sxj_C Activator 1 40 kDa subu 99.7 1.2E-17 4E-22 150.3 13.9 186 114-322 14-212 (340)
64 2v1u_A Cell division control p 99.7 4.7E-17 1.6E-21 148.5 17.6 197 121-327 15-253 (387)
65 1in4_A RUVB, holliday junction 99.7 9.8E-17 3.4E-21 143.7 17.8 193 116-326 16-226 (334)
66 1qvr_A CLPB protein; coiled co 99.7 1.9E-17 6.4E-22 165.8 13.3 201 124-328 557-817 (854)
67 2r44_A Uncharacterized protein 99.7 1.7E-17 5.7E-22 148.7 11.1 152 122-294 24-200 (331)
68 1g8p_A Magnesium-chelatase 38 99.7 5.8E-17 2E-21 146.1 14.3 195 118-327 17-299 (350)
69 3te6_A Regulatory protein SIR3 99.7 6.4E-17 2.2E-21 142.4 13.7 190 127-326 22-282 (318)
70 2p65_A Hypothetical protein PF 99.7 2E-17 7E-22 135.1 9.7 144 118-280 15-187 (187)
71 2qby_B CDC6 homolog 3, cell di 99.7 3.5E-16 1.2E-20 142.7 17.9 188 124-326 19-248 (384)
72 1fnn_A CDC6P, cell division co 99.7 2.9E-15 1E-19 136.7 19.2 199 121-327 13-251 (389)
73 2bjv_A PSP operon transcriptio 99.7 9.7E-16 3.3E-20 132.8 14.9 192 122-327 3-237 (265)
74 2qby_A CDC6 homolog 1, cell di 99.7 9.4E-16 3.2E-20 139.7 15.2 196 120-327 15-249 (386)
75 1a5t_A Delta prime, HOLB; zinc 99.6 2.8E-15 9.7E-20 134.2 15.8 169 130-319 7-202 (334)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 5.6E-16 1.9E-20 144.9 11.6 185 126-326 23-262 (500)
77 1ojl_A Transcriptional regulat 99.6 1.9E-15 6.5E-20 133.4 10.6 190 125-328 2-233 (304)
78 2w2u_A Hypothetical P60 katani 99.6 1.4E-14 4.8E-19 100.7 8.9 69 3-72 15-83 (83)
79 2gno_A DNA polymerase III, gam 99.5 3.8E-14 1.3E-18 124.8 12.6 143 129-292 1-152 (305)
80 2v6y_A AAA family ATPase, P60 99.5 1.5E-14 5.2E-19 100.9 7.9 69 3-72 7-75 (83)
81 2cpt_A SKD1 protein, vacuolar 99.5 1.9E-13 6.5E-18 101.5 13.6 74 3-76 14-87 (117)
82 3n70_A Transport activator; si 99.5 1E-14 3.6E-19 114.5 6.8 129 126-278 2-143 (145)
83 3co5_A Putative two-component 99.5 1E-14 3.4E-19 114.3 5.7 128 126-278 5-141 (143)
84 3f9v_A Minichromosome maintena 99.5 1.1E-14 3.9E-19 139.5 3.6 163 125-295 295-493 (595)
85 1wfd_A Hypothetical protein 15 99.5 5.2E-13 1.8E-17 95.2 10.6 72 3-75 11-82 (93)
86 4a5x_A MITD1, MIT domain-conta 99.4 7.8E-13 2.7E-17 92.6 10.6 72 4-76 13-84 (86)
87 2v6x_A Vacuolar protein sortin 99.4 1.3E-12 4.5E-17 92.0 10.7 72 3-75 9-80 (85)
88 1w5s_A Origin recognition comp 99.4 1.8E-12 6.2E-17 119.1 14.7 199 120-326 17-269 (412)
89 3k1j_A LON protease, ATP-depen 99.4 5.6E-13 1.9E-17 128.5 10.4 197 117-327 33-352 (604)
90 3ec2_A DNA replication protein 99.3 1.3E-11 4.3E-16 100.3 8.4 129 118-260 3-144 (180)
91 2qen_A Walker-type ATPase; unk 99.3 1.5E-10 5.1E-15 103.7 16.0 186 120-324 7-247 (350)
92 4akg_A Glutathione S-transfera 99.2 3.5E-11 1.2E-15 130.5 13.3 128 159-294 1268-1433(2695)
93 3cmw_A Protein RECA, recombina 99.2 1.9E-11 6.4E-16 127.5 7.9 108 119-226 1014-1168(1706)
94 2kjq_A DNAA-related protein; s 99.2 9.6E-11 3.3E-15 92.0 9.5 106 157-278 35-147 (149)
95 2fna_A Conserved hypothetical 99.1 9.1E-10 3.1E-14 98.8 12.4 180 119-323 7-250 (357)
96 1ny5_A Transcriptional regulat 99.1 3.3E-10 1.1E-14 103.2 9.6 190 124-328 136-368 (387)
97 2ymb_A MITD1, MIT domain-conta 99.0 2.2E-11 7.7E-16 101.8 0.0 73 3-76 19-91 (257)
98 2w58_A DNAI, primosome compone 98.9 6.6E-10 2.3E-14 91.8 5.0 99 119-228 19-124 (202)
99 3dzd_A Transcriptional regulat 98.9 1.9E-08 6.6E-13 90.8 13.8 190 125-328 129-359 (368)
100 3kw6_A 26S protease regulatory 98.9 1.5E-09 5.1E-14 75.2 4.8 52 277-329 1-52 (78)
101 1tue_A Replication protein E1; 98.8 2.1E-09 7.3E-14 87.6 4.7 104 159-279 59-179 (212)
102 2krk_A 26S protease regulatory 98.8 2.6E-09 8.9E-14 75.1 3.9 54 275-329 7-60 (86)
103 3f8t_A Predicted ATPase involv 98.8 1.7E-08 5.7E-13 92.3 9.6 142 127-281 215-383 (506)
104 1jr3_D DNA polymerase III, del 98.8 2E-08 6.9E-13 89.9 9.3 149 159-317 19-180 (343)
105 2qgz_A Helicase loader, putati 98.8 3.2E-09 1.1E-13 93.6 3.7 98 120-229 119-224 (308)
106 2r2a_A Uncharacterized protein 98.8 7.1E-09 2.4E-13 85.2 5.4 122 160-284 7-158 (199)
107 1u0j_A DNA replication protein 98.7 6.4E-08 2.2E-12 82.5 9.9 115 158-289 104-248 (267)
108 3vkg_A Dynein heavy chain, cyt 98.7 6.4E-08 2.2E-12 106.1 12.2 127 159-293 1305-1470(3245)
109 2vhj_A Ntpase P4, P4; non- hyd 98.7 1.6E-08 5.3E-13 88.4 5.9 65 159-226 124-190 (331)
110 4akg_A Glutathione S-transfera 98.6 2.4E-07 8.1E-12 101.1 12.9 121 159-289 646-790 (2695)
111 1ye8_A Protein THEP1, hypothet 98.6 6E-07 2E-11 72.4 12.1 23 160-182 2-24 (178)
112 3vlf_B 26S protease regulatory 98.5 5.8E-08 2E-12 68.6 3.7 49 280-329 2-50 (88)
113 3aji_B S6C, proteasome (prosom 98.5 1.1E-07 3.7E-12 66.5 4.2 49 280-329 2-50 (83)
114 1z6t_A APAF-1, apoptotic prote 98.3 9.7E-06 3.3E-10 77.8 15.1 170 122-316 121-322 (591)
115 3cmu_A Protein RECA, recombina 98.2 2.7E-06 9.4E-11 90.2 9.7 70 157-226 1426-1513(2050)
116 2c9o_A RUVB-like 1; hexameric 98.2 3.1E-06 1.1E-10 78.6 9.1 105 219-326 296-413 (456)
117 3vkg_A Dynein heavy chain, cyt 98.2 1.2E-05 4E-10 88.8 14.4 121 160-289 606-750 (3245)
118 1svm_A Large T antigen; AAA+ f 98.1 1E-06 3.4E-11 79.4 2.4 32 157-189 168-199 (377)
119 2dzn_B 26S protease regulatory 98.1 2.5E-07 8.6E-12 64.4 -1.3 47 282-329 1-47 (82)
120 2w0m_A SSO2452; RECA, SSPF, un 98.1 1.3E-05 4.5E-10 66.9 8.6 24 159-182 24-47 (235)
121 1qhx_A CPT, protein (chloramph 98.0 3.7E-06 1.3E-10 67.4 4.3 36 159-195 4-39 (178)
122 3upu_A ATP-dependent DNA helic 98.0 1E-05 3.6E-10 75.1 7.8 57 113-182 12-69 (459)
123 2a5y_B CED-4; apoptosis; HET: 98.0 9.5E-05 3.3E-09 70.2 14.6 168 128-316 131-331 (549)
124 3dm5_A SRP54, signal recogniti 98.0 9.3E-05 3.2E-09 67.7 13.7 70 157-226 99-190 (443)
125 3sfz_A APAF-1, apoptotic pepti 97.9 0.00015 5.3E-09 75.2 15.8 174 120-316 119-322 (1249)
126 1gvn_B Zeta; postsegregational 97.9 4.3E-05 1.5E-09 66.4 9.3 37 158-195 33-69 (287)
127 3trf_A Shikimate kinase, SK; a 97.9 7.7E-06 2.6E-10 66.0 4.0 31 159-190 6-36 (185)
128 2dl1_A Spartin; SPG20, MIT, st 97.9 0.00023 7.8E-09 51.6 10.8 70 4-73 19-99 (116)
129 2orw_A Thymidine kinase; TMTK, 97.8 3.4E-05 1.1E-09 62.4 7.2 112 159-277 4-137 (184)
130 2b8t_A Thymidine kinase; deoxy 97.8 4.4E-05 1.5E-09 63.5 8.0 32 159-190 13-46 (223)
131 2ehv_A Hypothetical protein PH 97.8 4.7E-05 1.6E-09 64.3 8.2 22 158-179 30-51 (251)
132 3vaa_A Shikimate kinase, SK; s 97.8 1.1E-05 3.9E-10 66.0 4.2 32 158-190 25-56 (199)
133 2p5t_B PEZT; postsegregational 97.8 7.5E-05 2.6E-09 63.5 9.3 37 158-195 32-68 (253)
134 3sr0_A Adenylate kinase; phosp 97.8 8E-05 2.7E-09 61.2 8.7 33 161-196 3-35 (206)
135 3jvv_A Twitching mobility prot 97.8 6.7E-05 2.3E-09 67.1 8.8 81 159-239 124-217 (356)
136 3e1s_A Exodeoxyribonuclease V, 97.8 4.2E-05 1.4E-09 72.9 7.6 98 159-258 205-317 (574)
137 1vma_A Cell division protein F 97.8 0.00016 5.4E-09 63.2 10.6 26 157-182 103-128 (306)
138 3rlf_A Maltose/maltodextrin im 97.8 6.7E-05 2.3E-09 67.4 8.3 24 159-182 30-53 (381)
139 3kb2_A SPBC2 prophage-derived 97.8 1.9E-05 6.6E-10 62.7 4.3 31 160-191 3-33 (173)
140 3kl4_A SRP54, signal recogniti 97.7 0.00022 7.7E-09 65.2 11.6 26 157-182 96-121 (433)
141 4g1u_C Hemin import ATP-bindin 97.7 8.4E-05 2.9E-09 63.7 8.3 24 159-182 38-61 (266)
142 1via_A Shikimate kinase; struc 97.7 1.8E-05 6.3E-10 63.2 3.8 29 160-189 6-34 (175)
143 3iij_A Coilin-interacting nucl 97.7 2.2E-05 7.5E-10 63.1 4.2 31 159-190 12-42 (180)
144 3fvq_A Fe(3+) IONS import ATP- 97.7 9.8E-05 3.3E-09 65.8 8.7 24 159-182 31-54 (359)
145 2iyv_A Shikimate kinase, SK; t 97.7 2.1E-05 7.3E-10 63.3 4.0 30 160-190 4-33 (184)
146 1kag_A SKI, shikimate kinase I 97.7 2.7E-05 9.2E-10 62.0 4.6 30 159-189 5-34 (173)
147 2iut_A DNA translocase FTSK; n 97.7 0.00084 2.9E-08 63.2 15.0 67 220-289 345-420 (574)
148 2zr9_A Protein RECA, recombina 97.7 8.3E-05 2.8E-09 66.4 7.9 69 158-226 61-147 (349)
149 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 0.00028 9.7E-09 60.2 10.6 38 159-196 5-44 (260)
150 4gp7_A Metallophosphoesterase; 97.7 3.7E-05 1.3E-09 61.3 4.7 19 159-177 10-28 (171)
151 1z47_A CYSA, putative ABC-tran 97.7 0.00014 4.7E-09 64.9 8.7 24 159-182 42-65 (355)
152 2r8r_A Sensor protein; KDPD, P 97.7 0.00032 1.1E-08 58.1 10.3 29 160-188 8-38 (228)
153 2eyu_A Twitching motility prot 97.7 6.5E-05 2.2E-09 64.2 6.4 24 159-182 26-49 (261)
154 3hr8_A Protein RECA; alpha and 97.7 0.0001 3.6E-09 65.6 7.9 68 159-226 62-147 (356)
155 2ze6_A Isopentenyl transferase 97.7 3.1E-05 1.1E-09 65.9 4.4 32 160-192 3-34 (253)
156 1zuh_A Shikimate kinase; alpha 97.7 3E-05 1E-09 61.5 3.9 31 159-190 8-38 (168)
157 2pcj_A ABC transporter, lipopr 97.7 0.00012 4E-09 61.1 7.8 24 159-182 31-54 (224)
158 1y63_A LMAJ004144AAA protein; 97.7 3.3E-05 1.1E-09 62.3 4.2 30 159-189 11-41 (184)
159 2rhm_A Putative kinase; P-loop 97.7 3.1E-05 1.1E-09 62.7 4.1 31 159-190 6-36 (193)
160 2it1_A 362AA long hypothetical 97.7 0.00012 4.2E-09 65.4 8.2 24 159-182 30-53 (362)
161 2rpa_A Katanin P60 ATPase-cont 97.6 0.00051 1.7E-08 46.3 9.2 68 3-71 8-75 (78)
162 1g29_1 MALK, maltose transport 97.6 0.00014 4.8E-09 65.3 8.6 24 159-182 30-53 (372)
163 2cdn_A Adenylate kinase; phosp 97.6 3.9E-05 1.3E-09 62.8 4.5 31 159-190 21-51 (201)
164 1zp6_A Hypothetical protein AT 97.6 2.7E-05 9.2E-10 63.1 3.5 36 159-195 10-45 (191)
165 4a74_A DNA repair and recombin 97.6 0.00011 3.9E-09 61.1 7.5 24 159-182 26-49 (231)
166 2yyz_A Sugar ABC transporter, 97.6 0.00015 5.2E-09 64.7 8.7 24 159-182 30-53 (359)
167 3umf_A Adenylate kinase; rossm 97.6 0.00011 3.8E-09 60.8 7.1 35 159-196 30-64 (217)
168 3lw7_A Adenylate kinase relate 97.6 3E-05 1E-09 61.6 3.6 28 160-189 3-30 (179)
169 1e6c_A Shikimate kinase; phosp 97.6 3.6E-05 1.2E-09 61.2 3.8 29 160-189 4-32 (173)
170 3tif_A Uncharacterized ABC tra 97.6 0.00014 4.8E-09 61.1 7.5 24 159-182 32-55 (235)
171 1knq_A Gluconate kinase; ALFA/ 97.6 5.7E-05 2E-09 60.2 4.9 30 159-189 9-38 (175)
172 3t61_A Gluconokinase; PSI-biol 97.6 4.6E-05 1.6E-09 62.4 4.2 30 159-189 19-48 (202)
173 3tui_C Methionine import ATP-b 97.6 0.00019 6.3E-09 64.1 8.3 24 159-182 55-78 (366)
174 1xp8_A RECA protein, recombina 97.6 0.00015 5.1E-09 65.0 7.7 69 158-226 74-160 (366)
175 3gfo_A Cobalt import ATP-bindi 97.6 0.00014 4.9E-09 62.5 7.3 24 159-182 35-58 (275)
176 2c95_A Adenylate kinase 1; tra 97.6 4.4E-05 1.5E-09 62.0 3.9 31 159-190 10-40 (196)
177 1tev_A UMP-CMP kinase; ploop, 97.6 4.4E-05 1.5E-09 61.9 3.8 30 159-189 4-33 (196)
178 2onk_A Molybdate/tungstate ABC 97.6 0.00013 4.4E-09 61.5 6.7 24 159-182 25-48 (240)
179 1aky_A Adenylate kinase; ATP:A 97.6 5E-05 1.7E-09 63.1 4.2 30 159-189 5-34 (220)
180 2cvh_A DNA repair and recombin 97.6 0.00017 5.9E-09 59.5 7.5 34 159-193 21-54 (220)
181 1g5t_A COB(I)alamin adenosyltr 97.6 0.00052 1.8E-08 55.5 9.9 109 159-274 29-175 (196)
182 3dl0_A Adenylate kinase; phosp 97.5 4.4E-05 1.5E-09 63.2 3.6 30 160-190 2-31 (216)
183 1vpl_A ABC transporter, ATP-bi 97.5 0.00026 8.9E-09 60.2 8.5 24 159-182 42-65 (256)
184 3fb4_A Adenylate kinase; psych 97.5 4.7E-05 1.6E-09 63.0 3.8 30 160-190 2-31 (216)
185 3crm_A TRNA delta(2)-isopenten 97.5 3.3E-05 1.1E-09 67.8 2.9 34 159-193 6-39 (323)
186 1u94_A RECA protein, recombina 97.5 0.00023 7.8E-09 63.6 8.4 34 159-192 64-99 (356)
187 1n0w_A DNA repair protein RAD5 97.5 0.00019 6.6E-09 60.2 7.5 23 159-181 25-47 (243)
188 2olj_A Amino acid ABC transpor 97.5 0.00036 1.2E-08 59.6 9.2 24 159-182 51-74 (263)
189 4eun_A Thermoresistant glucoki 97.5 7.5E-05 2.6E-09 61.1 4.7 30 158-188 29-58 (200)
190 2pt5_A Shikimate kinase, SK; a 97.5 5.6E-05 1.9E-09 59.8 3.8 29 160-189 2-30 (168)
191 3nh6_A ATP-binding cassette SU 97.5 0.00045 1.5E-08 60.3 9.9 26 157-182 79-104 (306)
192 3cm0_A Adenylate kinase; ATP-b 97.5 6.1E-05 2.1E-09 60.7 4.1 29 159-188 5-33 (186)
193 1v43_A Sugar-binding transport 97.5 0.00014 4.7E-09 65.3 6.5 24 159-182 38-61 (372)
194 1kht_A Adenylate kinase; phosp 97.5 4.4E-05 1.5E-09 61.7 3.1 24 159-182 4-27 (192)
195 2ga8_A Hypothetical 39.9 kDa p 97.5 4.9E-05 1.7E-09 67.3 3.5 53 128-189 2-54 (359)
196 2bwj_A Adenylate kinase 5; pho 97.5 5.9E-05 2E-09 61.4 3.8 30 159-189 13-42 (199)
197 3be4_A Adenylate kinase; malar 97.5 5.2E-05 1.8E-09 62.9 3.5 31 159-190 6-36 (217)
198 3tlx_A Adenylate kinase 2; str 97.5 6.2E-05 2.1E-09 63.7 4.0 31 158-189 29-59 (243)
199 2fz4_A DNA repair protein RAD2 97.5 0.00023 7.7E-09 59.9 7.4 32 160-192 110-141 (237)
200 1oxx_K GLCV, glucose, ABC tran 97.5 0.00015 5.2E-09 64.7 6.5 24 159-182 32-55 (353)
201 2ius_A DNA translocase FTSK; n 97.5 0.0019 6.5E-08 60.2 14.1 69 220-289 299-374 (512)
202 1ly1_A Polynucleotide kinase; 97.5 5.7E-05 2E-09 60.3 3.3 33 159-194 3-36 (181)
203 2vli_A Antibiotic resistance p 97.5 6.2E-05 2.1E-09 60.4 3.4 29 159-188 6-34 (183)
204 2ixe_A Antigen peptide transpo 97.5 0.00083 2.8E-08 57.6 10.7 55 216-276 172-229 (271)
205 1zd8_A GTP:AMP phosphotransfer 97.5 6.6E-05 2.3E-09 62.7 3.6 30 159-189 8-37 (227)
206 3d31_A Sulfate/molybdate ABC t 97.5 0.00023 8E-09 63.3 7.3 24 159-182 27-50 (348)
207 1qf9_A UMP/CMP kinase, protein 97.5 6.6E-05 2.2E-09 60.7 3.5 30 159-189 7-36 (194)
208 1ukz_A Uridylate kinase; trans 97.5 8.6E-05 3E-09 60.7 4.1 31 159-190 16-46 (203)
209 1ak2_A Adenylate kinase isoenz 97.5 8.9E-05 3E-09 62.2 4.3 30 159-189 17-46 (233)
210 1pzn_A RAD51, DNA repair and r 97.4 0.00038 1.3E-08 62.1 8.5 24 159-182 132-155 (349)
211 2dr3_A UPF0273 protein PH0284; 97.4 0.00064 2.2E-08 57.1 9.5 34 158-191 23-58 (247)
212 1nks_A Adenylate kinase; therm 97.4 9.3E-05 3.2E-09 59.8 4.0 36 160-195 3-40 (194)
213 2pt7_A CAG-ALFA; ATPase, prote 97.4 0.00017 5.7E-09 63.9 5.7 68 159-226 172-248 (330)
214 3zvl_A Bifunctional polynucleo 97.4 0.0011 3.6E-08 60.7 11.2 34 159-195 259-292 (416)
215 1e4v_A Adenylate kinase; trans 97.4 8.5E-05 2.9E-09 61.4 3.5 30 160-190 2-31 (214)
216 3io5_A Recombination and repai 97.4 0.00031 1.1E-08 61.1 7.0 41 154-194 24-68 (333)
217 2ewv_A Twitching motility prot 97.4 0.00031 1E-08 63.3 7.3 24 159-182 137-160 (372)
218 1zak_A Adenylate kinase; ATP:A 97.4 6.4E-05 2.2E-09 62.5 2.6 29 159-188 6-34 (222)
219 3cmu_A Protein RECA, recombina 97.4 0.00051 1.7E-08 73.3 9.9 70 157-226 1080-1167(2050)
220 2pez_A Bifunctional 3'-phospho 97.4 0.00013 4.6E-09 58.3 4.4 38 158-195 5-44 (179)
221 2cbz_A Multidrug resistance-as 97.4 0.0012 4E-08 55.5 10.1 24 159-182 32-55 (237)
222 1cke_A CK, MSSA, protein (cyti 97.4 0.00014 4.7E-09 60.6 4.3 29 159-188 6-34 (227)
223 2bbw_A Adenylate kinase 4, AK4 97.4 0.00014 4.7E-09 61.6 4.3 29 158-187 27-55 (246)
224 2ghi_A Transport protein; mult 97.3 0.0011 3.8E-08 56.5 10.0 24 159-182 47-70 (260)
225 2v54_A DTMP kinase, thymidylat 97.3 0.00015 5.1E-09 59.2 4.2 33 159-191 5-37 (204)
226 2xb4_A Adenylate kinase; ATP-b 97.3 0.00015 5.2E-09 60.3 4.3 29 160-189 2-30 (223)
227 1v5w_A DMC1, meiotic recombina 97.3 0.00054 1.9E-08 60.9 8.1 36 159-194 123-166 (343)
228 1ji0_A ABC transporter; ATP bi 97.3 0.00067 2.3E-08 57.1 8.2 24 159-182 33-56 (240)
229 2jaq_A Deoxyguanosine kinase; 97.3 0.00015 5.1E-09 59.1 4.1 28 160-188 2-29 (205)
230 2qi9_C Vitamin B12 import ATP- 97.3 0.00059 2E-08 57.8 7.8 24 159-182 27-50 (249)
231 2if2_A Dephospho-COA kinase; a 97.3 0.00012 4E-09 59.9 3.3 29 160-190 3-31 (204)
232 1b0u_A Histidine permease; ABC 97.3 0.00089 3E-08 57.2 8.9 24 159-182 33-56 (262)
233 2px0_A Flagellar biosynthesis 97.3 0.0037 1.3E-07 54.3 12.8 35 158-192 105-142 (296)
234 2nq2_C Hypothetical ABC transp 97.3 0.00097 3.3E-08 56.6 8.9 24 159-182 32-55 (253)
235 3lda_A DNA repair protein RAD5 97.3 0.00047 1.6E-08 62.5 7.2 23 159-181 179-201 (400)
236 2bdt_A BH3686; alpha-beta prot 97.3 0.00017 5.9E-09 58.2 4.0 24 160-183 4-27 (189)
237 1ex7_A Guanylate kinase; subst 97.3 0.00017 6E-09 58.1 3.9 25 159-183 2-26 (186)
238 3uie_A Adenylyl-sulfate kinase 97.3 0.00016 5.5E-09 59.1 3.7 38 158-195 25-64 (200)
239 1kgd_A CASK, peripheral plasma 97.3 0.00017 5.7E-09 57.9 3.7 24 159-182 6-29 (180)
240 2ff7_A Alpha-hemolysin translo 97.3 0.0011 3.7E-08 56.1 8.9 24 159-182 36-59 (247)
241 1w36_D RECD, exodeoxyribonucle 97.3 0.00053 1.8E-08 65.9 7.7 24 159-182 165-188 (608)
242 3nwj_A ATSK2; P loop, shikimat 97.3 0.00023 8E-09 60.3 4.6 31 159-190 49-79 (250)
243 1jjv_A Dephospho-COA kinase; P 97.2 0.00018 6.2E-09 58.9 3.8 28 160-189 4-31 (206)
244 3gd7_A Fusion complex of cysti 97.2 0.0012 4E-08 59.7 9.4 24 159-182 48-71 (390)
245 2zts_A Putative uncharacterize 97.2 0.0018 6.2E-08 54.3 10.2 35 158-192 30-67 (251)
246 2grj_A Dephospho-COA kinase; T 97.2 0.00019 6.5E-09 58.3 3.8 33 160-195 14-46 (192)
247 2z43_A DNA repair and recombin 97.2 0.00044 1.5E-08 61.1 6.4 36 159-194 108-151 (324)
248 2pbr_A DTMP kinase, thymidylat 97.2 0.00026 8.9E-09 57.2 4.5 31 160-190 2-34 (195)
249 3r20_A Cytidylate kinase; stru 97.2 0.00026 9.1E-09 59.2 4.6 29 159-188 10-38 (233)
250 2yvu_A Probable adenylyl-sulfa 97.2 0.00032 1.1E-08 56.4 5.0 38 158-195 13-52 (186)
251 3foz_A TRNA delta(2)-isopenten 97.2 0.00028 9.5E-09 61.3 4.6 33 159-192 11-43 (316)
252 2qor_A Guanylate kinase; phosp 97.2 0.0002 7E-09 58.6 3.6 27 157-183 11-37 (204)
253 3e70_C DPA, signal recognition 97.2 0.002 7E-08 56.7 10.3 26 157-182 128-153 (328)
254 3ake_A Cytidylate kinase; CMP 97.2 0.00026 9E-09 57.9 4.3 29 160-189 4-32 (208)
255 3eab_A Spastin; spastin, MIT, 97.2 0.0024 8.3E-08 43.9 8.2 42 3-44 12-56 (89)
256 3a8t_A Adenylate isopentenyltr 97.2 0.00022 7.6E-09 62.8 3.8 34 159-193 41-74 (339)
257 1vt4_I APAF-1 related killer D 97.2 0.0043 1.5E-07 62.5 12.9 42 128-180 131-172 (1221)
258 4i1u_A Dephospho-COA kinase; s 97.1 0.0012 4E-08 54.2 7.6 122 159-290 10-152 (210)
259 3cmw_A Protein RECA, recombina 97.1 0.00085 2.9E-08 70.8 8.3 70 157-226 731-818 (1706)
260 4e22_A Cytidylate kinase; P-lo 97.1 0.00044 1.5E-08 58.7 5.1 29 159-188 28-56 (252)
261 1m7g_A Adenylylsulfate kinase; 97.1 0.00034 1.2E-08 57.6 4.3 37 159-195 26-65 (211)
262 2plr_A DTMP kinase, probable t 97.1 0.00026 8.8E-09 58.1 3.5 24 159-182 5-28 (213)
263 3c8u_A Fructokinase; YP_612366 97.1 0.0006 2E-08 56.0 5.6 25 159-183 23-47 (208)
264 3exa_A TRNA delta(2)-isopenten 97.1 0.00034 1.2E-08 60.9 4.2 33 160-193 5-37 (322)
265 1uj2_A Uridine-cytidine kinase 97.1 0.00044 1.5E-08 58.6 4.8 38 159-197 23-68 (252)
266 3tau_A Guanylate kinase, GMP k 97.1 0.00027 9.2E-09 58.1 3.3 25 158-182 8-32 (208)
267 3ozx_A RNAse L inhibitor; ATP 97.1 0.0016 5.6E-08 61.4 9.0 24 159-182 295-318 (538)
268 1lvg_A Guanylate kinase, GMP k 97.1 0.00033 1.1E-08 57.1 3.5 25 158-182 4-28 (198)
269 2j41_A Guanylate kinase; GMP, 97.0 0.0003 1E-08 57.5 3.2 24 159-182 7-30 (207)
270 3tr0_A Guanylate kinase, GMP k 97.0 0.00036 1.2E-08 56.9 3.7 24 159-182 8-31 (205)
271 3d3q_A TRNA delta(2)-isopenten 97.0 0.00041 1.4E-08 61.2 4.1 32 160-192 9-40 (340)
272 2qmh_A HPR kinase/phosphorylas 97.0 0.00037 1.3E-08 56.4 3.4 33 158-192 34-66 (205)
273 3thx_B DNA mismatch repair pro 97.0 0.002 6.9E-08 64.3 9.4 22 160-181 675-696 (918)
274 3b5x_A Lipid A export ATP-bind 97.0 0.0053 1.8E-07 58.6 12.1 25 158-182 369-393 (582)
275 1zu4_A FTSY; GTPase, signal re 97.0 0.0036 1.2E-07 54.9 10.1 26 157-182 104-129 (320)
276 2qt1_A Nicotinamide riboside k 97.0 0.0004 1.4E-08 56.9 3.7 30 159-188 22-51 (207)
277 2v3c_C SRP54, signal recogniti 97.0 0.0036 1.2E-07 57.3 10.3 35 158-192 99-135 (432)
278 3qf4_B Uncharacterized ABC tra 97.0 0.003 1E-07 60.5 10.2 25 158-182 381-405 (598)
279 3a00_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 56.1 3.4 24 159-182 2-25 (186)
280 2j37_W Signal recognition part 97.0 0.011 3.9E-07 55.0 13.7 35 158-192 101-137 (504)
281 1vht_A Dephospho-COA kinase; s 97.0 0.0005 1.7E-08 56.8 4.1 30 159-190 5-34 (218)
282 2wwf_A Thymidilate kinase, put 97.0 0.00039 1.3E-08 57.1 3.4 24 159-182 11-34 (212)
283 3qf4_A ABC transporter, ATP-bi 97.0 0.0038 1.3E-07 59.7 10.7 25 158-182 369-393 (587)
284 1tf7_A KAIC; homohexamer, hexa 97.0 0.0018 6.1E-08 61.1 8.4 87 158-244 281-404 (525)
285 1uf9_A TT1252 protein; P-loop, 97.0 0.00041 1.4E-08 56.5 3.4 29 159-189 9-37 (203)
286 2f6r_A COA synthase, bifunctio 97.0 0.00062 2.1E-08 58.8 4.6 29 159-189 76-104 (281)
287 4a82_A Cystic fibrosis transme 97.0 0.0024 8E-08 61.0 9.0 24 159-182 368-391 (578)
288 3ney_A 55 kDa erythrocyte memb 97.0 0.00055 1.9E-08 55.7 3.8 25 158-182 19-43 (197)
289 2h92_A Cytidylate kinase; ross 97.0 0.00056 1.9E-08 56.5 4.0 30 159-189 4-33 (219)
290 1nn5_A Similar to deoxythymidy 97.0 0.00045 1.5E-08 56.8 3.4 24 159-182 10-33 (215)
291 1q3t_A Cytidylate kinase; nucl 96.9 0.00071 2.4E-08 56.7 4.7 30 159-189 17-46 (236)
292 1ltq_A Polynucleotide kinase; 96.9 0.00036 1.2E-08 60.8 2.9 34 159-194 3-36 (301)
293 2z0h_A DTMP kinase, thymidylat 96.9 0.00045 1.5E-08 55.9 3.3 29 161-189 3-33 (197)
294 4b3f_X DNA-binding protein smu 96.9 0.0014 4.9E-08 63.4 7.3 50 129-192 190-241 (646)
295 1rz3_A Hypothetical protein rb 96.9 0.0023 7.8E-08 52.2 7.4 34 159-192 23-58 (201)
296 3asz_A Uridine kinase; cytidin 96.9 0.00053 1.8E-08 56.3 3.6 24 159-182 7-30 (211)
297 3eph_A TRNA isopentenyltransfe 96.9 0.0006 2.1E-08 61.4 4.1 32 159-191 3-34 (409)
298 3b9q_A Chloroplast SRP recepto 96.9 0.0012 4E-08 57.6 5.7 25 158-182 100-124 (302)
299 1j8m_F SRP54, signal recogniti 96.9 0.0067 2.3E-07 52.7 10.5 69 158-226 98-188 (297)
300 1p9r_A General secretion pathw 96.9 0.004 1.4E-07 56.7 9.4 49 121-182 143-191 (418)
301 1ls1_A Signal recognition part 96.9 0.0076 2.6E-07 52.3 10.8 26 157-182 97-122 (295)
302 2oap_1 GSPE-2, type II secreti 96.9 0.0011 3.7E-08 62.2 5.5 68 159-226 261-341 (511)
303 2xxa_A Signal recognition part 96.8 0.0089 3E-07 54.7 11.4 70 157-226 99-191 (433)
304 3thx_A DNA mismatch repair pro 96.8 0.0048 1.6E-07 61.8 10.3 21 160-180 664-684 (934)
305 1htw_A HI0065; nucleotide-bind 96.8 0.00074 2.5E-08 52.9 3.6 24 159-182 34-57 (158)
306 3j16_B RLI1P; ribosome recycli 96.8 0.0055 1.9E-07 58.6 10.2 24 159-182 104-127 (608)
307 3b60_A Lipid A export ATP-bind 96.8 0.0051 1.7E-07 58.7 10.0 24 159-182 370-393 (582)
308 1w4r_A Thymidine kinase; type 96.8 0.0026 9E-08 51.3 6.6 34 159-192 21-56 (195)
309 1z6g_A Guanylate kinase; struc 96.8 0.00079 2.7E-08 55.8 3.6 25 159-183 24-48 (218)
310 1znw_A Guanylate kinase, GMP k 96.8 0.00079 2.7E-08 55.2 3.6 24 159-182 21-44 (207)
311 2og2_A Putative signal recogni 96.8 0.0016 5.6E-08 58.0 5.8 26 157-182 156-181 (359)
312 1s96_A Guanylate kinase, GMP k 96.7 0.0009 3.1E-08 55.5 3.7 24 159-182 17-40 (219)
313 2i1q_A DNA repair and recombin 96.7 0.0016 5.4E-08 57.3 5.4 23 159-181 99-121 (322)
314 3j16_B RLI1P; ribosome recycli 96.7 0.003 1E-07 60.4 7.6 22 161-182 381-402 (608)
315 2yhs_A FTSY, cell division pro 96.7 0.013 4.3E-07 54.3 11.4 24 159-182 294-317 (503)
316 2yl4_A ATP-binding cassette SU 96.7 0.008 2.7E-07 57.5 10.5 25 158-182 370-394 (595)
317 3fdi_A Uncharacterized protein 96.7 0.0012 4.1E-08 53.9 3.8 29 160-189 8-36 (201)
318 3bk7_A ABC transporter ATP-bin 96.7 0.0037 1.3E-07 59.9 7.6 24 159-182 383-406 (607)
319 2v9p_A Replication protein E1; 96.6 0.0012 4E-08 57.5 3.7 27 157-183 125-151 (305)
320 1yqt_A RNAse L inhibitor; ATP- 96.6 0.011 3.8E-07 55.8 10.6 26 157-182 46-71 (538)
321 2i3b_A HCR-ntpase, human cance 96.6 0.0011 3.9E-08 53.5 3.4 23 160-182 3-25 (189)
322 3tqf_A HPR(Ser) kinase; transf 96.6 0.0013 4.5E-08 51.8 3.6 24 158-181 16-39 (181)
323 2ffh_A Protein (FFH); SRP54, s 96.6 0.015 5.1E-07 53.0 11.0 26 157-182 97-122 (425)
324 1xx6_A Thymidine kinase; NESG, 96.6 0.0029 9.9E-08 51.1 5.7 24 159-182 9-32 (191)
325 3ozx_A RNAse L inhibitor; ATP 96.6 0.0059 2E-07 57.6 8.6 23 160-182 27-49 (538)
326 2q6t_A DNAB replication FORK h 96.6 0.0056 1.9E-07 56.4 8.2 36 157-192 199-237 (444)
327 1odf_A YGR205W, hypothetical 3 96.6 0.0025 8.7E-08 55.1 5.5 24 159-182 32-55 (290)
328 1rj9_A FTSY, signal recognitio 96.6 0.0023 7.8E-08 55.8 5.2 25 158-182 102-126 (304)
329 1tf7_A KAIC; homohexamer, hexa 96.6 0.0048 1.7E-07 58.1 7.8 25 158-182 39-65 (525)
330 4eaq_A DTMP kinase, thymidylat 96.6 0.0017 5.8E-08 54.2 4.1 25 159-183 27-51 (229)
331 1gtv_A TMK, thymidylate kinase 96.6 0.00051 1.8E-08 56.4 0.9 23 160-182 2-24 (214)
332 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0038 1.3E-07 58.9 6.9 24 159-182 313-336 (538)
333 2qm8_A GTPase/ATPase; G protei 96.5 0.0069 2.4E-07 53.6 8.1 24 159-182 56-79 (337)
334 3tqc_A Pantothenate kinase; bi 96.5 0.0026 8.8E-08 55.8 5.0 24 159-182 93-116 (321)
335 3gmt_A Adenylate kinase; ssgci 96.5 0.0021 7.1E-08 53.5 4.1 33 160-195 10-42 (230)
336 3aez_A Pantothenate kinase; tr 96.5 0.0037 1.3E-07 54.7 5.9 24 159-182 91-114 (312)
337 3lnc_A Guanylate kinase, GMP k 96.5 0.001 3.5E-08 55.5 2.2 24 159-182 28-52 (231)
338 2axn_A 6-phosphofructo-2-kinas 96.5 0.0053 1.8E-07 57.7 7.3 36 159-194 36-73 (520)
339 1wb9_A DNA mismatch repair pro 96.5 0.014 4.9E-07 57.6 10.5 23 159-181 608-630 (800)
340 4f4c_A Multidrug resistance pr 96.5 0.0076 2.6E-07 63.0 9.1 26 157-182 443-468 (1321)
341 2jeo_A Uridine-cytidine kinase 96.5 0.0016 5.4E-08 54.9 3.3 25 160-185 27-51 (245)
342 4aby_A DNA repair protein RECN 96.4 0.051 1.7E-06 49.3 13.6 23 160-182 62-84 (415)
343 1c9k_A COBU, adenosylcobinamid 96.4 0.0018 6E-08 51.8 3.3 32 161-194 2-33 (180)
344 3b6e_A Interferon-induced heli 96.4 0.004 1.4E-07 50.8 5.6 23 159-181 49-71 (216)
345 1a7j_A Phosphoribulokinase; tr 96.4 0.0014 4.7E-08 56.8 2.8 36 160-195 7-44 (290)
346 3b85_A Phosphate starvation-in 96.4 0.0015 5.3E-08 53.6 2.9 23 159-181 23-45 (208)
347 3iby_A Ferrous iron transport 96.3 0.015 5.2E-07 49.2 8.8 22 160-181 3-24 (256)
348 1nlf_A Regulatory protein REPA 96.3 0.0021 7E-08 55.3 3.4 24 159-182 31-54 (279)
349 3kta_A Chromosome segregation 96.3 0.0023 7.8E-08 51.0 3.5 23 160-182 28-50 (182)
350 2ged_A SR-beta, signal recogni 96.3 0.0042 1.4E-07 49.8 5.0 24 159-182 49-72 (193)
351 1x6v_B Bifunctional 3'-phospho 96.3 0.0028 9.6E-08 60.5 4.5 37 159-195 53-91 (630)
352 2j9r_A Thymidine kinase; TK1, 96.3 0.012 4.2E-07 48.1 7.7 30 161-190 31-62 (214)
353 2wjg_A FEOB, ferrous iron tran 96.3 0.022 7.6E-07 45.1 9.3 23 159-181 8-30 (188)
354 1sq5_A Pantothenate kinase; P- 96.3 0.0035 1.2E-07 54.8 4.7 24 159-182 81-104 (308)
355 3bk7_A ABC transporter ATP-bin 96.3 0.01 3.4E-07 56.8 8.2 24 159-182 118-141 (607)
356 3vkw_A Replicase large subunit 96.3 0.0042 1.4E-07 56.7 5.3 22 159-180 162-183 (446)
357 3hdt_A Putative kinase; struct 96.3 0.0028 9.6E-08 52.6 3.8 29 160-189 16-44 (223)
358 1xjc_A MOBB protein homolog; s 96.3 0.0026 8.8E-08 50.3 3.4 24 159-182 5-28 (169)
359 1cr0_A DNA primase/helicase; R 96.3 0.0024 8.2E-08 55.4 3.5 24 159-182 36-59 (296)
360 3k53_A Ferrous iron transport 96.3 0.018 6.3E-07 49.1 9.0 23 159-181 4-26 (271)
361 2xau_A PRE-mRNA-splicing facto 96.2 0.0058 2E-07 60.3 6.4 62 120-181 70-132 (773)
362 1sgw_A Putative ABC transporte 96.2 0.002 7E-08 53.1 2.7 24 159-182 36-59 (214)
363 3p32_A Probable GTPase RV1496/ 96.2 0.012 4.1E-07 52.5 7.8 24 159-182 80-103 (355)
364 1np6_A Molybdopterin-guanine d 96.2 0.0029 9.8E-08 50.4 3.4 24 159-182 7-30 (174)
365 3g5u_A MCG1178, multidrug resi 96.2 0.02 7E-07 59.6 10.5 26 157-182 415-440 (1284)
366 3bh0_A DNAB-like replicative h 96.2 0.0053 1.8E-07 53.8 5.2 36 157-192 67-104 (315)
367 4f4c_A Multidrug resistance pr 96.1 0.017 5.8E-07 60.4 9.6 26 157-182 1104-1129(1321)
368 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0029 9.8E-08 53.6 3.1 23 159-181 30-52 (250)
369 2pze_A Cystic fibrosis transme 96.1 0.0025 8.4E-08 53.2 2.7 24 159-182 35-58 (229)
370 1g6h_A High-affinity branched- 96.1 0.0024 8.1E-08 54.3 2.6 24 159-182 34-57 (257)
371 2gxq_A Heat resistant RNA depe 96.1 0.018 6E-07 46.7 7.9 18 159-176 39-56 (207)
372 1mv5_A LMRA, multidrug resista 96.1 0.0024 8E-08 53.8 2.6 24 159-182 29-52 (243)
373 2zu0_C Probable ATP-dependent 96.1 0.0031 1.1E-07 53.9 3.2 39 217-257 181-222 (267)
374 3ux8_A Excinuclease ABC, A sub 96.1 0.015 5.2E-07 56.4 8.4 51 219-276 565-618 (670)
375 2ocp_A DGK, deoxyguanosine kin 96.1 0.0041 1.4E-07 52.1 3.8 27 159-185 3-29 (241)
376 3sop_A Neuronal-specific septi 96.1 0.003 1E-07 54.1 3.0 23 160-182 4-26 (270)
377 1t6n_A Probable ATP-dependent 96.0 0.041 1.4E-06 45.0 9.9 23 159-181 52-74 (220)
378 1m8p_A Sulfate adenylyltransfe 96.0 0.004 1.4E-07 59.1 4.1 37 159-195 397-436 (573)
379 3dz8_A RAS-related protein RAB 96.0 0.016 5.6E-07 46.2 7.2 23 160-182 25-47 (191)
380 2f7s_A C25KG, RAS-related prot 96.0 0.032 1.1E-06 45.4 9.1 22 160-181 27-48 (217)
381 1p5z_B DCK, deoxycytidine kina 96.0 0.0019 6.4E-08 55.1 1.4 26 159-184 25-50 (263)
382 2o8b_B DNA mismatch repair pro 96.0 0.032 1.1E-06 56.6 10.4 21 159-179 790-810 (1022)
383 1bif_A 6-phosphofructo-2-kinas 96.0 0.014 4.8E-07 54.1 7.4 24 159-182 40-63 (469)
384 2ihy_A ABC transporter, ATP-bi 96.0 0.003 1E-07 54.3 2.7 24 159-182 48-71 (279)
385 3ux8_A Excinuclease ABC, A sub 96.0 0.057 1.9E-06 52.4 11.9 54 216-276 218-276 (670)
386 2f1r_A Molybdopterin-guanine d 96.0 0.0019 6.7E-08 51.2 1.3 24 159-182 3-26 (171)
387 2yz2_A Putative ABC transporte 96.0 0.0031 1.1E-07 53.9 2.6 24 159-182 34-57 (266)
388 2f9l_A RAB11B, member RAS onco 96.0 0.0039 1.3E-07 50.4 3.1 22 160-181 7-28 (199)
389 2iw3_A Elongation factor 3A; a 96.0 0.019 6.4E-07 57.7 8.5 22 159-180 462-483 (986)
390 2gza_A Type IV secretion syste 95.9 0.0031 1.1E-07 56.4 2.6 24 159-182 176-199 (361)
391 1oix_A RAS-related protein RAB 95.9 0.0037 1.3E-07 50.3 2.9 23 160-182 31-53 (191)
392 3pqc_A Probable GTP-binding pr 95.9 0.028 9.6E-07 44.7 8.1 23 159-181 24-46 (195)
393 3lv8_A DTMP kinase, thymidylat 95.9 0.0045 1.5E-07 51.8 3.4 24 159-182 28-51 (236)
394 3szr_A Interferon-induced GTP- 95.9 0.012 3.9E-07 56.5 6.6 23 160-182 47-69 (608)
395 3iev_A GTP-binding protein ERA 95.9 0.031 1.1E-06 48.7 8.8 23 159-181 11-33 (308)
396 4edh_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 50.9 3.3 24 159-182 7-30 (213)
397 1lw7_A Transcriptional regulat 95.9 0.0039 1.3E-07 55.9 3.0 24 159-182 171-194 (365)
398 1zd9_A ADP-ribosylation factor 95.9 0.025 8.5E-07 45.1 7.6 22 160-181 24-45 (188)
399 1ewq_A DNA mismatch repair pro 95.9 0.03 1E-06 55.0 9.4 24 159-182 577-600 (765)
400 3v9p_A DTMP kinase, thymidylat 95.8 0.0043 1.5E-07 51.6 2.9 23 160-182 27-49 (227)
401 2pjz_A Hypothetical protein ST 95.8 0.0035 1.2E-07 53.4 2.3 24 159-182 31-54 (263)
402 1hv8_A Putative ATP-dependent 95.8 0.031 1.1E-06 49.4 8.7 23 159-181 45-67 (367)
403 3a1s_A Iron(II) transport prot 95.8 0.058 2E-06 45.6 9.8 22 160-181 7-28 (258)
404 2r6a_A DNAB helicase, replicat 95.8 0.0097 3.3E-07 54.9 5.2 35 158-192 203-240 (454)
405 2v6i_A RNA helicase; membrane, 95.8 0.019 6.3E-07 52.6 7.1 21 159-179 3-24 (431)
406 3lxw_A GTPase IMAP family memb 95.7 0.051 1.8E-06 45.6 9.3 23 159-181 22-44 (247)
407 1f2t_A RAD50 ABC-ATPase; DNA d 95.7 0.0066 2.3E-07 46.9 3.4 24 159-182 24-47 (149)
408 3g5u_A MCG1178, multidrug resi 95.7 0.032 1.1E-06 58.2 9.4 24 159-182 1060-1083(1284)
409 2orv_A Thymidine kinase; TP4A 95.7 0.071 2.4E-06 44.1 9.6 23 160-182 21-43 (234)
410 2dyk_A GTP-binding protein; GT 95.7 0.0064 2.2E-07 46.9 3.2 22 160-181 3-24 (161)
411 2p67_A LAO/AO transport system 95.7 0.03 1E-06 49.6 7.8 24 159-182 57-80 (341)
412 4a1f_A DNAB helicase, replicat 95.7 0.011 3.8E-07 52.2 4.9 36 157-192 45-82 (338)
413 2wji_A Ferrous iron transport 95.6 0.0053 1.8E-07 48.0 2.6 22 160-181 5-26 (165)
414 2qtf_A Protein HFLX, GTP-bindi 95.6 0.079 2.7E-06 47.3 10.6 22 160-181 181-202 (364)
415 1g8f_A Sulfate adenylyltransfe 95.6 0.0082 2.8E-07 56.0 4.2 25 159-183 396-420 (511)
416 2zej_A Dardarin, leucine-rich 95.6 0.0044 1.5E-07 49.4 2.1 21 160-180 4-24 (184)
417 2bbs_A Cystic fibrosis transme 95.6 0.0046 1.6E-07 53.5 2.3 24 159-182 65-88 (290)
418 3i8s_A Ferrous iron transport 95.6 0.055 1.9E-06 46.2 9.1 23 159-181 4-26 (274)
419 1nrj_B SR-beta, signal recogni 95.6 0.0075 2.6E-07 49.4 3.5 24 159-182 13-36 (218)
420 2crb_A Nuclear receptor bindin 95.6 0.3 1E-05 33.5 10.6 69 3-72 11-79 (97)
421 1z2a_A RAS-related protein RAB 95.6 0.007 2.4E-07 47.0 3.1 22 160-181 7-28 (168)
422 2gk6_A Regulator of nonsense t 95.5 0.0066 2.3E-07 58.5 3.4 23 160-182 197-219 (624)
423 1kao_A RAP2A; GTP-binding prot 95.5 0.0076 2.6E-07 46.6 3.2 22 160-181 5-26 (167)
424 2fwr_A DNA repair protein RAD2 95.5 0.014 4.8E-07 54.0 5.5 33 160-193 110-142 (472)
425 3cr8_A Sulfate adenylyltranfer 95.5 0.0046 1.6E-07 58.4 2.1 37 159-195 370-409 (552)
426 2gj8_A MNME, tRNA modification 95.5 0.0061 2.1E-07 48.1 2.5 23 159-181 5-27 (172)
427 3ld9_A DTMP kinase, thymidylat 95.5 0.0093 3.2E-07 49.4 3.6 24 159-182 22-45 (223)
428 3tmk_A Thymidylate kinase; pho 95.5 0.0076 2.6E-07 49.7 3.0 25 159-183 6-30 (216)
429 1ek0_A Protein (GTP-binding pr 95.5 0.0082 2.8E-07 46.6 3.1 23 160-182 5-27 (170)
430 2ce2_X GTPase HRAS; signaling 95.4 0.0075 2.6E-07 46.5 2.8 23 160-182 5-27 (166)
431 3bgw_A DNAB-like replicative h 95.4 0.014 4.8E-07 53.6 5.0 36 157-192 196-233 (444)
432 1u8z_A RAS-related protein RAL 95.4 0.0085 2.9E-07 46.4 3.1 23 159-181 5-27 (168)
433 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0086 3E-07 47.0 3.2 23 159-181 8-30 (177)
434 1z0j_A RAB-22, RAS-related pro 95.4 0.0087 3E-07 46.5 3.2 23 160-182 8-30 (170)
435 2nzj_A GTP-binding protein REM 95.4 0.0085 2.9E-07 46.9 3.0 23 159-181 5-27 (175)
436 3t34_A Dynamin-related protein 95.4 0.071 2.4E-06 47.4 9.4 22 160-181 36-57 (360)
437 1ky3_A GTP-binding protein YPT 95.4 0.009 3.1E-07 47.0 3.2 23 159-181 9-31 (182)
438 4tmk_A Protein (thymidylate ki 95.4 0.0087 3E-07 49.2 3.1 23 160-182 5-27 (213)
439 1rif_A DAR protein, DNA helica 95.4 0.14 4.9E-06 43.6 11.0 22 160-181 130-151 (282)
440 1z08_A RAS-related protein RAB 95.4 0.0095 3.2E-07 46.4 3.1 23 159-181 7-29 (170)
441 3pey_A ATP-dependent RNA helic 95.4 0.15 5E-06 45.4 11.4 21 159-179 45-65 (395)
442 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0086 2.9E-07 55.3 3.2 24 159-182 139-162 (460)
443 1g16_A RAS-related protein SEC 95.3 0.0087 3E-07 46.5 2.8 22 160-181 5-26 (170)
444 4ag6_A VIRB4 ATPase, type IV s 95.3 0.019 6.3E-07 51.9 5.4 25 158-182 35-59 (392)
445 2erx_A GTP-binding protein DI- 95.3 0.0088 3E-07 46.5 2.8 22 160-181 5-26 (172)
446 2gks_A Bifunctional SAT/APS ki 95.3 0.013 4.3E-07 55.4 4.3 37 159-195 373-411 (546)
447 1knx_A Probable HPR(Ser) kinas 95.3 0.0098 3.3E-07 51.7 3.2 24 158-181 147-170 (312)
448 1c1y_A RAS-related protein RAP 95.3 0.01 3.5E-07 46.0 3.1 22 160-181 5-26 (167)
449 1ni3_A YCHF GTPase, YCHF GTP-b 95.3 0.0064 2.2E-07 54.8 2.1 22 159-180 21-42 (392)
450 1qhl_A Protein (cell division 95.3 0.0025 8.6E-08 53.0 -0.5 22 161-182 30-51 (227)
451 2aka_B Dynamin-1; fusion prote 95.3 0.29 9.9E-06 41.9 12.7 23 159-181 27-49 (299)
452 1r8s_A ADP-ribosylation factor 95.3 0.011 3.6E-07 45.8 3.1 22 160-181 2-23 (164)
453 2lkc_A Translation initiation 95.3 0.013 4.6E-07 45.9 3.8 23 159-181 9-31 (178)
454 3q85_A GTP-binding protein REM 95.2 0.0099 3.4E-07 46.2 2.9 21 160-180 4-24 (169)
455 1r2q_A RAS-related protein RAB 95.2 0.011 3.6E-07 46.0 3.1 23 159-181 7-29 (170)
456 2vp4_A Deoxynucleoside kinase; 95.2 0.0072 2.5E-07 50.3 2.1 23 159-181 21-43 (230)
457 3bc1_A RAS-related protein RAB 95.2 0.011 3.7E-07 47.1 3.1 23 159-181 12-34 (195)
458 2hxs_A RAB-26, RAS-related pro 95.2 0.012 4.2E-07 46.1 3.3 23 159-181 7-29 (178)
459 1s2m_A Putative ATP-dependent 95.1 0.054 1.8E-06 48.6 7.9 21 159-179 59-79 (400)
460 1upt_A ARL1, ADP-ribosylation 95.1 0.012 4.1E-07 45.8 3.1 23 159-181 8-30 (171)
461 4dsu_A GTPase KRAS, isoform 2B 95.1 0.012 4.1E-07 46.7 3.2 22 160-181 6-27 (189)
462 3qks_A DNA double-strand break 95.1 0.013 4.4E-07 47.8 3.4 26 159-184 24-49 (203)
463 2qag_B Septin-6, protein NEDD5 95.1 0.0093 3.2E-07 54.3 2.7 21 161-181 45-65 (427)
464 3q72_A GTP-binding protein RAD 95.1 0.0098 3.3E-07 46.1 2.5 21 160-180 4-24 (166)
465 2wsm_A Hydrogenase expression/ 95.1 0.012 4E-07 48.4 3.1 24 159-182 31-54 (221)
466 2y8e_A RAB-protein 6, GH09086P 95.1 0.011 3.8E-07 46.4 2.8 23 159-181 15-37 (179)
467 4dcu_A GTP-binding protein ENG 95.1 0.043 1.5E-06 50.6 7.2 23 159-181 24-46 (456)
468 2oil_A CATX-8, RAS-related pro 95.1 0.012 4.2E-07 47.0 3.1 22 160-181 27-48 (193)
469 1m7b_A RND3/RHOE small GTP-bin 95.1 0.011 3.8E-07 47.0 2.8 23 159-181 8-30 (184)
470 3con_A GTPase NRAS; structural 95.1 0.012 4.2E-07 46.8 3.1 23 159-181 22-44 (190)
471 1z0f_A RAB14, member RAS oncog 95.1 0.013 4.3E-07 46.0 3.1 24 159-182 16-39 (179)
472 2fn4_A P23, RAS-related protei 95.1 0.012 4E-07 46.3 2.9 23 159-181 10-32 (181)
473 3dkp_A Probable ATP-dependent 95.0 0.14 4.8E-06 42.5 9.8 17 159-175 67-83 (245)
474 3clv_A RAB5 protein, putative; 95.0 0.013 4.4E-07 47.0 3.2 23 159-181 8-30 (208)
475 2efe_B Small GTP-binding prote 95.0 0.013 4.5E-07 46.1 3.1 23 159-181 13-35 (181)
476 1vec_A ATP-dependent RNA helic 95.0 0.17 5.9E-06 40.6 10.0 18 159-176 41-58 (206)
477 1svi_A GTP-binding protein YSX 95.0 0.016 5.4E-07 46.3 3.6 23 159-181 24-46 (195)
478 2wjy_A Regulator of nonsense t 95.0 0.012 4.1E-07 58.2 3.4 23 160-182 373-395 (800)
479 3tkl_A RAS-related protein RAB 95.0 0.012 4.2E-07 47.0 2.9 23 159-181 17-39 (196)
480 2a9k_A RAS-related protein RAL 95.0 0.014 4.6E-07 46.2 3.1 23 159-181 19-41 (187)
481 2bme_A RAB4A, RAS-related prot 95.0 0.012 4.2E-07 46.6 2.8 23 159-181 11-33 (186)
482 3tw8_B RAS-related protein RAB 95.0 0.013 4.3E-07 46.1 2.8 23 159-181 10-32 (181)
483 3kkq_A RAS-related protein M-R 95.0 0.015 5.2E-07 45.9 3.3 23 159-181 19-41 (183)
484 1ko7_A HPR kinase/phosphatase; 95.0 0.016 5.5E-07 50.4 3.6 24 158-181 144-167 (314)
485 3ihw_A Centg3; RAS, centaurin, 95.0 0.014 4.9E-07 46.4 3.1 22 160-181 22-43 (184)
486 1pui_A ENGB, probable GTP-bind 94.9 0.0044 1.5E-07 50.5 0.0 23 159-181 27-49 (210)
487 1m2o_B GTP-binding protein SAR 94.9 0.013 4.4E-07 47.0 2.8 23 159-181 24-46 (190)
488 2g6b_A RAS-related protein RAB 94.9 0.015 5E-07 45.8 3.1 23 159-181 11-33 (180)
489 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.015 5E-07 46.0 3.1 22 160-181 7-28 (186)
490 2rcn_A Probable GTPase ENGC; Y 94.9 0.015 5.1E-07 51.7 3.4 24 159-182 216-239 (358)
491 2obl_A ESCN; ATPase, hydrolase 94.9 0.02 6.8E-07 50.8 4.2 24 159-182 72-95 (347)
492 2oca_A DAR protein, ATP-depend 94.9 0.052 1.8E-06 50.6 7.3 23 159-181 129-151 (510)
493 3c5c_A RAS-like protein 12; GD 94.9 0.015 5.3E-07 46.3 3.2 22 160-181 23-44 (187)
494 2gf9_A RAS-related protein RAB 94.9 0.015 5.2E-07 46.3 3.1 22 160-181 24-45 (189)
495 2www_A Methylmalonic aciduria 94.9 0.015 5.2E-07 51.6 3.4 24 159-182 75-98 (349)
496 3e2i_A Thymidine kinase; Zn-bi 94.9 0.073 2.5E-06 43.5 7.1 19 161-179 31-50 (219)
497 1q57_A DNA primase/helicase; d 94.8 0.02 6.7E-07 53.6 4.2 36 157-192 241-279 (503)
498 3t1o_A Gliding protein MGLA; G 94.8 0.016 5.4E-07 46.3 3.1 24 159-182 15-38 (198)
499 2bov_A RAla, RAS-related prote 94.8 0.016 5.4E-07 46.8 3.1 23 159-181 15-37 (206)
500 2cxx_A Probable GTP-binding pr 94.8 0.011 3.8E-07 46.9 2.1 22 160-181 3-24 (190)
No 1
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.7e-53 Score=395.24 Aligned_cols=325 Identities=68% Similarity=1.091 Sum_probs=184.1
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKGKKQPV-- 80 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~~~~~~-- 80 (330)
.+++|++++++|+++|+.|+|++|+.+|+++++.|..+++++..+.+.++.++.++.+|++|++.|+.++.+..+...
T Consensus 7 ~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~~~~~~~ 86 (444)
T 2zan_A 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKP 86 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 578999999999999999999999999999999999999888666777889999999999999999999976542211
Q ss_pred -CCCCCcccCC-CCC-CCCCCCCChhHHHHHHhhcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCC
Q psy3808 81 -KDGESRTKDD-KKE-SDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVP 157 (330)
Q Consensus 81 -~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (330)
+.+.++++.. ++. ..+.+..+...+.+...+...+....|+++|+||+|++++++.|.+.+.+|+.++.+|.....|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~ 166 (444)
T 2zan_A 87 VKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTP 166 (444)
T ss_dssp -------------------------------------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCC
T ss_pred cccccCCcccccCCCCcccccccchHHHHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCC
Confidence 1111111111 111 1111223344455666778888889999999999999999999999999999999888766667
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh------
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG------ 231 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~------ 231 (330)
++++||+||||||||++|+++|+++.+.+|+.++++++.+.|.|..+..++.+|..++...|+|||||| ++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~~~~~ 245 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE-IDSLCGSRSE 245 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESC-TTTTCCCSSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEec-hHhhccCCCC
Confidence 799999999999999999999999866899999999999999999888999999999999999999999 5532
Q ss_pred --------hHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHh
Q psy3808 232 --------ISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDEN 303 (330)
Q Consensus 232 --------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~ 303 (330)
..+.++..++++.....+++||+|||.|+.++++++|||+..+++++|+.++|..||+.++...+..+++.+
T Consensus 246 ~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~ 325 (444)
T 2zan_A 246 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEAD 325 (444)
T ss_dssp CCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHH
T ss_pred ccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHH
Confidence 344555555555445578999999999999999999999999999999999999999999988877678999
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 304 LKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 304 ~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+..||+.++||+|+||.++|++|.+
T Consensus 326 l~~la~~t~G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 326 FQELGRKTDGYSGADISIIVRDALM 350 (444)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-46 Score=338.58 Aligned_cols=213 Identities=37% Similarity=0.598 Sum_probs=192.6
Q ss_pred cccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 112 EGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 112 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
......+.|.++|+||+|++++++.|++.+.+|+.+|..|...+ .|++|+|||||||||||++|+++|+++ +.+|+.+
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-~~~f~~v 213 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-DCKFIRV 213 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-TCEEEEE
T ss_pred hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-CCCceEE
Confidence 34456778999999999999999999999999999999998754 467999999999999999999999999 8999999
Q ss_pred cccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc-----------------hhhHHHHHHHHhcCCCCCCcEEEE
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-----------------RGISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----------------~~~~~~l~~~l~~~~~~~~~v~vi 253 (330)
+++++.++|+|++++.++.+|..|+..+|||||||| +| ......++..++++... .+|+||
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDE-iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vI 291 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE-IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKII 291 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEES-SSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeec-chhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEE
Confidence 999999999999999999999999999999999999 44 12345677777777554 679999
Q ss_pred ecCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 254 GATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+|||+|+.+||+++| ||+..|+||+|+.++|.+||+.++++.+.. ++.++..||+.|+||||+||.++|++|.+
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~ 367 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGM 367 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999887643 66789999999999999999999999976
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-45 Score=330.97 Aligned_cols=210 Identities=34% Similarity=0.604 Sum_probs=189.1
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCC-CCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
...+.|+++|+||+|++++++.|.+.+.+|+.++..|...+. +++|+|||||||||||++|+++|+++ +.+|+.++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~fi~v~~s 250 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-SATFLRIVGS 250 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-TCEEEEEESG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-CCCEEEEEHH
Confidence 345789999999999999999999999999999999986654 66999999999999999999999999 8999999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc-----------------hhhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-----------------RGISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----------------~~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
++.++|+|++++.++.+|..|+..+|||||||| +| ......++..++++... .+|+||+||
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDE-iDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-~~ViVIaAT 328 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDE-IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR-GDVKVIMAT 328 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEE-ESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-SSEEEEEEE
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEeh-hhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC-CCEEEEEeC
Confidence 999999999999999999999999999999999 33 12234566666666544 679999999
Q ss_pred CCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 257 NIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 257 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+|+.+||+++| ||+..|+|++|+.++|.+||+.++.+.+.. ++.++..||+.|+||||+||.++|++|.+
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~~ 401 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGL 401 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999887643 56789999999999999999999999976
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-44 Score=330.27 Aligned_cols=209 Identities=37% Similarity=0.597 Sum_probs=188.4
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
+.+.|+++|+||+|++++++.|++.+.+|+.++..|...+ .|++|+|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-~~~fi~vs~s~ 278 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-DATFIRVIGSE 278 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH-TCEEEEEEGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc-CCCeEEEEhHH
Confidence 4468999999999999999999999999999999998755 577999999999999999999999999 89999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----------------hhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----------------GISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----------------~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+.++|+|++++.++.+|..|+..+|||||||| +|. .....++..++++... .+|+||+|||
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDE-iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~ViVIaATN 356 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDE-IDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR-GNIKVMFATN 356 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEEC-CTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT-TTEEEEEECS
T ss_pred hhcccCCHHHHHHHHHHHHHHhcCCceEeecc-cccccccccCcCCCccHHHHHHHHHHHHHhhccCCC-CcEEEEeCCC
Confidence 99999999999999999999999999999999 431 1234455666665443 6799999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+|+.+|++++| ||++.|+|++|+.++|.+||+.++++.+.. .+.++..||+.|+||||+||.++|++|.+
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~ 428 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGM 428 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887643 56789999999999999999999999976
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-45 Score=332.60 Aligned_cols=213 Identities=33% Similarity=0.604 Sum_probs=191.8
Q ss_pred cccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 112 EGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 112 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
......+.|.++|+||+|++++++.|.+.+.+|+.+|..|...+ .|++|+|||||||||||++|+++|+++ +.+|+.+
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-~~~~~~v 246 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-GANFIFS 246 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEE
Confidence 34555678999999999999999999999999999999997655 467999999999999999999999999 8999999
Q ss_pred cccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc-----------------hhhHHHHHHHHhcCCCCCCcEEEE
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-----------------RGISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----------------~~~~~~l~~~l~~~~~~~~~v~vi 253 (330)
+++++.++|+|+++..++.+|..|+...|||||||| +| ......|+..++++... ++++||
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDE-iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~vivI 324 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE-VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL-GQTKII 324 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEEC-CCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT-TSSEEE
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeec-ccccccccccCCCCcchHHHHHHHHHHHHhhcccCC-CCeEEE
Confidence 999999999999999999999999999999999999 44 11234677777776554 679999
Q ss_pred ecCCCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 254 GATNIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+|||+|+.+||+++| ||+..|+||+|+.++|..||+.++.+.+.. ++.++..||+.|+||||+||.++|++|.+
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGF 400 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999998 799999999999999999999999887643 67789999999999999999999999875
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-45 Score=332.35 Aligned_cols=210 Identities=38% Similarity=0.614 Sum_probs=189.2
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
...+.|+++|+||+|++++++.|.+.+.+|+.+|..|...+ .|++|+|||||||||||++|+++|+++ +.+|+.++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~s 249 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-NATFLKLAAP 249 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-CCCEEEEehh
Confidence 34567999999999999999999999999999999997655 467999999999999999999999999 8999999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----------------hhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----------------GISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----------------~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
++.++|+|++++.++.+|..++..+|||||||| +|. .....++..++++... ++|+||+||
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~IifiDE-iDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~-~~ViVIaaT 327 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDE-LDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD-DRVKVLAAT 327 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEEC-THHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS-CSSEEEEEC
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeEEeecc-hhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC-CCEEEEEeC
Confidence 999999999999999999999999999999999 431 1234566777776554 679999999
Q ss_pred CCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 257 NIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 257 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+|+.+||+++| ||+..|+||+|+.++|.+||+.++.+.+.. ++.++..||+.|+||||+||.++|++|.+
T Consensus 328 Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 328 NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999998 999999999999999999999999887643 66789999999999999999999999876
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-44 Score=325.36 Aligned_cols=210 Identities=36% Similarity=0.601 Sum_probs=191.0
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
...+.|+++|+||+|++++++.|.+.+.+|+.++..|...+ .|++|+|||||||||||++|+++|+++ +.+|+.++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~ 240 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGS 240 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecc
Confidence 34578999999999999999999999999999999998654 467999999999999999999999999 8999999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc-----------------hhhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-----------------RGISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----------------~~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
++.++|+|+++..++.+|..|+...|||||||| +| ......|+..++++... .+++||+||
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDE-iD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~-~~v~vI~aT 318 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDE-VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS-TNVKVIMAT 318 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEEC-THHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS-CSEEEEEEE
T ss_pred hhhccccchhHHHHHHHHHHHHHcCCCeeechh-hhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC-CCEEEEEec
Confidence 999999999999999999999999999999999 33 23456778888887654 679999999
Q ss_pred CCCCCcCHHHHh--ccccEEEec-CCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 257 NIPWVLDAAIRR--RFEKRIYIA-LPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 257 n~~~~l~~~l~~--Rf~~~i~~~-~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+|+.+||+++| ||+..|+|| +|+..+|..||+.++.+.+.. ++.++..||..|+||||+||.++|++|.+
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 999999999999 999999997 899999999999999887643 66789999999999999999999999975
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.2e-41 Score=326.61 Aligned_cols=210 Identities=38% Similarity=0.715 Sum_probs=170.2
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
...+.|+++|++++|++++++.|.+.+.+|+.++..|...+ .+++++|||||||||||++|+++|+++ +.+|+.++.+
T Consensus 467 ~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~ 545 (806)
T 3cf2_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGP 545 (806)
T ss_dssp CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-CCceEEeccc
Confidence 34567899999999999999999999999999999997755 577899999999999999999999999 8999999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc-----------------hhhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID-----------------RGISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~-----------------~~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
++.++|+|++++.++.+|..|+...|||||||| +| ..+.+.|+..++++... .+|+||+||
T Consensus 546 ~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDE-iDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~-~~V~vi~aT 623 (806)
T 3cf2_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDE-LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGAT 623 (806)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSC-GGGCC--------------CHHHHHHHHHHHSSCSS-SSEEEECC-
T ss_pred hhhccccchHHHHHHHHHHHHHHcCCceeechh-hhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC-CCEEEEEeC
Confidence 999999999999999999999999999999999 44 23467888999998665 679999999
Q ss_pred CCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 257 NIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 257 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+||.+|++++| ||++.|+||+|+.++|.+||+.++++.+.. ++.++..||+.|+||||+||.++|++|.+
T Consensus 624 N~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~~ 696 (806)
T 3cf2_A 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACK 696 (806)
T ss_dssp CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHHH
T ss_pred CCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999887643 67899999999999999999999999976
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5e-39 Score=287.27 Aligned_cols=214 Identities=74% Similarity=1.196 Sum_probs=195.8
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
+..+.|+++|+||+|++++++.|.+.+.+|+.++..|.....|++++||+||||||||++|+++|+++.+.+|+.+++++
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45678999999999999999999999999999999998767788999999999999999999999998668999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--------------hhHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR--------------GISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~--------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
+.+.|.|..+..++.+|..++...|+|||||| +|. ...+.++..++++.....+++||+|||.|+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDE-IDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEET-TTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeec-HHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999 553 244667777887765567899999999999
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
.++++++|||+..+++++|+.++|..|++.++...+..+++.++..||+.+.||+|+||.++|++|.+.
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQ 229 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTH
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887777899999999999999999999999999763
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=6.7e-39 Score=290.22 Aligned_cols=225 Identities=65% Similarity=1.057 Sum_probs=186.7
Q ss_pred hHHHHHHhhcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 103 DKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.+...+...+....|+++|++|+|++++++.|.+.+.+|+.++..|.....+++++||+||||||||++|+++|+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 29 DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp ------------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 44455666677777889999999999999999999999999999999998877788999999999999999999999999
Q ss_pred CCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------------hHHHHHHHHhcCCCCCC
Q psy3808 183 NNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------------ISNALFLLLSGVGNDMD 248 (330)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------------~~~~l~~~l~~~~~~~~ 248 (330)
+.+|+.+++.++.+.|.|..+..++.+|..++...|+|||||| ++.. ..+.++..++++.....
T Consensus 109 -~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 109 -NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQ-VDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp -TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEEC-GGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred -CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEec-hHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 7899999999999999999999999999999999999999999 6632 35677888887766567
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+++||++||.|+.++++++|||+..+++++|+.++|..||+.++...+..+++.++..||+.++||+|+||.++|++|++
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~ 266 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 266 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988777789999999999999999999999999876
Q ss_pred c
Q psy3808 329 D 329 (330)
Q Consensus 329 ~ 329 (330)
.
T Consensus 267 ~ 267 (355)
T 2qp9_X 267 Q 267 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=6.7e-38 Score=280.47 Aligned_cols=213 Identities=67% Similarity=1.084 Sum_probs=197.7
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.+..++|+++|++|+|++.+++.|.+.+.+|+.++..+.....|++++||+||||||||++|+++|+++ +.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-TCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-CCCEEEEchH
Confidence 456788999999999999999999999999999999998888888999999999999999999999999 7899999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--------------hhHHHHHHHHhcCCCCCCcEEEEecCCCC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR--------------GISNALFLLLSGVGNDMDGILVLGATNIP 259 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~--------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~ 259 (330)
++.+.|.|..+..++.+|..++...|+|||||| ++. ...+.++..++++.....+++||+|||.|
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQ-VDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEEC-GGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEech-hhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 999999999999999999999999999999999 653 23577888888876666789999999999
Q ss_pred CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 260 WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 260 ~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+.++++++|||+..+++++|+.++|..||+.++...+..+++.++..|++.++||+++||.++|++|.+
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~ 233 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 233 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTT
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877899999999999999999999999999875
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.3e-38 Score=308.65 Aligned_cols=207 Identities=38% Similarity=0.659 Sum_probs=190.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
..|.++|+||+|++++++.|++.+.+|+.+|..|...+ .|++|||||||||||||+||+++|+++ +.+|+.++++++.
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-g~~~~~v~~~~l~ 275 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIM 275 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-TCEEEEEEHHHHH
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-CCeEEEEEhHHhh
Confidence 45789999999999999999999999999999998866 478999999999999999999999999 8999999999999
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
++|.|+++..++.+|..|+.++|||||||| +| ..+.+.|+.+++++... .+|+||+|||+|+.+
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDE-iDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~-~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDE-LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSI 353 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEES-GGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG-GCEEEEEECSSTTTS
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEeh-hcccccccCCCCChHHHHHHHHHHHHHhccccc-CCEEEEEecCChhhc
Confidence 999999999999999999999999999999 44 34456788888887654 579999999999999
Q ss_pred CHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 263 DAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 263 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|++++| ||++.|.++.|+..+|.+||+.++.+.... ++.++..||..|.||+|+||.++|++|.+
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~ 420 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999 999999999999999999999999887643 67899999999999999999999999875
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4e-35 Score=259.93 Aligned_cols=210 Identities=38% Similarity=0.709 Sum_probs=185.7
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
+..+.|.++|+||+|++++++.|.+.+.+++.++..|...+ .+++++||+||||||||++|+++|+.+ +.+++.+++.
T Consensus 5 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~~ 83 (301)
T 3cf0_A 5 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGP 83 (301)
T ss_dssp CCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT-TCEEEEECHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEhH
Confidence 34577899999999999999999999999988888776544 456899999999999999999999999 7899999999
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
++.+.|.|..+..++.+|..+....|+|||||| ++.. ....++..++++... .+++||+||
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDE-id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~at 161 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDE-LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGAT 161 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECS-TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEE
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEC-hHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEec
Confidence 999999999888999999999999999999999 6632 246677778776543 579999999
Q ss_pred CCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 257 NIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 257 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|.++.++++++| ||+..+++++|+.++|.+|++.++...+.. .+.++..++..+.||+|+||.++|++|.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~ 234 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACK 234 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999887643 56789999999999999999999999875
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=251.95 Aligned_cols=208 Identities=37% Similarity=0.649 Sum_probs=171.9
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
..|.++|+||+|++++++.|.+.+.+|+..+..+...+ .+++|++|+||||||||+|++++|+.+ +.+++.++..++.
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~~~~i~i~g~~l~ 81 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-GLNFISVKGPELL 81 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-TCEEEEEETTTTC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-CCCEEEEEcHHHH
Confidence 46889999999999999999999999999888877654 355789999999999999999999999 6789999999998
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--------------hhHHHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERIDR--------------GISNALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~--------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
+.|.++.+..++.+|+.+....|+++|+|| ++. ...+.+...+++.... ..++++++||.|+.+
T Consensus 82 ~~~~~~~~~~i~~vf~~a~~~~p~i~~~De-id~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 82 NMYVGESERAVRQVFQRAKNSAPCVIFFDE-VDALCPRRSDRETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTCSEEEEEET-CTTTCC---------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCeEeeeh-hhhhhcccCCCcchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 888888899999999999888999999999 542 2345566677766543 568999999999999
Q ss_pred CHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCC--CCCChHhHHHHHHHc--CCCCHHHHHHHHhhccc
Q psy3808 263 DAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTR--NTISDENLKELAKRT--EGYSGADISTLERNFKV 328 (330)
Q Consensus 263 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~--~~~~~~~~~~la~~~--~g~~~~di~~l~~~a~~ 328 (330)
|++++| ||+..|++++|+.++|.+||+.++.... ....+.++..+|..+ +||||+||.++|++|.+
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999986532 123567899999975 49999999999999976
No 15
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=260.96 Aligned_cols=219 Identities=46% Similarity=0.781 Sum_probs=186.7
Q ss_pred HHhhcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE
Q psy3808 108 QANLEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF 187 (330)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~ 187 (330)
...+...++..+++++|++|+|++.+++.|.+.+..+..++..+...+.+++++||+||||||||++|+++|..+ +.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-~~~~ 176 (389)
T 3vfd_A 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-NATF 176 (389)
T ss_dssp CTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-TCEE
T ss_pred HHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-cCcE
Confidence 344466777888999999999999999999999999888888887777777899999999999999999999999 7899
Q ss_pred EEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------------hHHHHHHHHhcCCCC-CCcEEE
Q psy3808 188 FSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------------ISNALFLLLSGVGND-MDGILV 252 (330)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------------~~~~l~~~l~~~~~~-~~~v~v 252 (330)
+.+++.++.+.|.|..+..++.+|..+....|+|||||| +|.. ....++..+++.... ..+++|
T Consensus 177 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDE-id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 177 FNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQ-VDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp EEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEET-GGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred EEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEEC-chhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 999999999999999999999999999999999999999 6532 344566666655442 357999
Q ss_pred EecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 253 LGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 253 i~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+|||.++.+++++++||+..+++++|+.++|..||+.++...+..+++.++..|++.+.||++++|..+|+.|.+
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~ 331 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAAL 331 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999899999999999999999999998888899999999999999999999999998864
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-33 Score=248.26 Aligned_cols=217 Identities=46% Similarity=0.781 Sum_probs=189.3
Q ss_pred hhcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 110 NLEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.+...+...+++++|++++|++++++.+.+.+..+..++..+...+.+++++||+||||||||++|+++++.+ +.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-~~~~~~ 84 (297)
T 3b9p_A 6 LILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-SATFLN 84 (297)
T ss_dssp HHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEE
Confidence 3444566678999999999999999999999998888888877666677899999999999999999999999 789999
Q ss_pred ecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--------------hhHHHHHHHHhcCCCC--CCcEEEE
Q psy3808 190 VSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR--------------GISNALFLLLSGVGND--MDGILVL 253 (330)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~--------------~~~~~l~~~l~~~~~~--~~~v~vi 253 (330)
++++++.+.+.+.....++.+|..+....|+|||||| ++. .....++..+++.... ..+++||
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi 163 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE-VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVL 163 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEET-GGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEE
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEecc-HHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 9999999999999999999999999999999999999 543 2344566677765432 2469999
Q ss_pred ecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 254 GATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 254 ~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
++||.++.+++++++||+..+++++|+.++|..|++.++...+..+++.++..+++.+.||+++||..+|++|.+
T Consensus 164 ~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~ 238 (297)
T 3b9p_A 164 AATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL 238 (297)
T ss_dssp EEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred eecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887777788999999999999999999999998864
No 17
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=252.87 Aligned_cols=219 Identities=44% Similarity=0.775 Sum_probs=190.9
Q ss_pred HHhhcccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE
Q psy3808 108 QANLEGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF 187 (330)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~ 187 (330)
.+.+...+....++++|++|+|++.+++.|.+.+..++..+..+.....+++++||+||||||||++|+++|..+ +.+|
T Consensus 67 ~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-~~~~ 145 (357)
T 3d8b_A 67 IELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-GATF 145 (357)
T ss_dssp HHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-TCEE
T ss_pred HHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-CCeE
Confidence 334445566678899999999999999999999998888888877666677899999999999999999999999 7899
Q ss_pred EEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch--------------hhHHHHHHHHhcCCC-CCCcEEE
Q psy3808 188 FSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR--------------GISNALFLLLSGVGN-DMDGILV 252 (330)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~--------------~~~~~l~~~l~~~~~-~~~~v~v 252 (330)
+.++++++.+.|.|.....++.+|..+....|+|||||| ++. ...+.++..+++... ...+++|
T Consensus 146 ~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~v 224 (357)
T 3d8b_A 146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDE-IDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV 224 (357)
T ss_dssp EEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEET-HHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEE
T ss_pred EEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeC-chhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEE
Confidence 999999999999999999999999999999999999999 643 234456666666543 2357999
Q ss_pred EecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 253 LGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 253 i~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|+|||.++.+++++++||+..+++++|+.++|..+++.++...+..+++.++..|++.+.||+++||..+|+.|.+
T Consensus 225 I~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 225 VGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASL 300 (357)
T ss_dssp EEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred EEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777889999999999999999999999999864
No 18
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=5.5e-32 Score=251.26 Aligned_cols=205 Identities=43% Similarity=0.659 Sum_probs=175.3
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCC-CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGK-RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
.+.++|+||+|++++++.+.+.+.. +..+..+... ..+++++||+||||||||++|+++++++ +.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~-~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA-NVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-CCCeeeCCHHHHHH
Confidence 5678999999999999999998765 3344444443 3456899999999999999999999999 78999999999999
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----------------hhHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----------------GISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
.+.|.....++.+|..+....|+|||||| ++. ...+.++..++++... .+++||++||.|+
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDE-id~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDE-IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEET-GGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEec-hhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChh
Confidence 99999989999999999999999999999 543 2345566666665433 5799999999999
Q ss_pred CcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 261 VLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 261 ~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.++++++| ||+..+.+++|+..+|..|++.++...+.. ++.++..+|..+.||+|+||.++|++|.+
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal 234 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAAL 234 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999999877543 56679999999999999999999999864
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.98 E-value=1.5e-31 Score=235.32 Aligned_cols=209 Identities=45% Similarity=0.726 Sum_probs=180.4
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
...|..+|++++|++++++.|.+.+..++..+..+...+ .+++++||+||||||||++|+++++.+ +.+++.+++.++
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-~~~~~~v~~~~~ 87 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-NATFIRVVGSEL 87 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-TCEEEEEEGGGG
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEehHHH
Confidence 467889999999999999999999988887777766544 355789999999999999999999999 789999999999
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------------hHHHHHHHHhcCC--CCCCcEEEEecCCCC
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------------ISNALFLLLSGVG--NDMDGILVLGATNIP 259 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------------~~~~l~~~l~~~~--~~~~~v~vi~ttn~~ 259 (330)
.+.+.+.....+..+|..+....|+|||||| ++.. ....+..++..+. ....+++||+|||.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDE-IDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEET-THHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEEC-HHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 9999999999999999999999999999999 6532 2345555554332 223579999999999
Q ss_pred CCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 260 WVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 260 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+.+++++++ ||+..+.+++|+.++|.+|++.++...... .+.++..++..+.||++++|..+|+.|.+
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~ 236 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGM 236 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999998876643 55689999999999999999999998864
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=4.5e-31 Score=228.86 Aligned_cols=208 Identities=37% Similarity=0.615 Sum_probs=172.5
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCC-CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGK-RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
....+..+|++++|++++++.+.+.+.. +..+..+... ..++++++|+||||||||++|+++++.+ +.+++.+++.+
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~i~~~~ 80 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSD 80 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEECSCS
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-CCCEEEEeHHH
Confidence 3466889999999999999999987754 4444444433 3345789999999999999999999999 78899999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----------------hhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----------------GISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----------------~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+...+.+.....++.+|..+....|+++|||| ++. ...+.++..++++.. ..+++||++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDe-id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn 158 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDE-IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATN 158 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETT-HHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEES
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhh-hhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeC
Confidence 99988998888999999999988899999999 431 233455556665543 35799999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.++.+++++.+ ||+..+.+++|+.++|.+|++.++...+.. ++.++..++..+.||+++||.++|++|.+
T Consensus 159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 230 (257)
T 1lv7_A 159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAAL 230 (257)
T ss_dssp CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999998 999999999999999999999998876543 55678899999999999999999999865
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=6.6e-31 Score=228.27 Aligned_cols=206 Identities=39% Similarity=0.590 Sum_probs=167.4
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
|+++|++++|++++++.+.+.+.. +..+..+...+ .+++++||+||||||||++|+++++.+ +.+++.++++++.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA-QVPFLAMAGAEFVEV 78 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCCEEEEETTTTSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEechHHHHhh
Confidence 568999999999999999987765 44444444333 455789999999999999999999999 789999999999988
Q ss_pred ccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh---------------hH---HHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 199 WLGESEKLVKTLFELARAHRPSIIFIDERIDRG---------------IS---NALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 199 ~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~---------------~~---~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
+.+.....+..+|..+....|+|||||| ++.. .. ..++..++.... ..++++|+|||.++
T Consensus 79 ~~~~~~~~~~~~~~~a~~~~~~vl~iDe-id~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 79 IGGLGAARVRSLFKEARARAPCIVYIDE-IDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRAD 156 (262)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEEC-C-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGG
T ss_pred ccChhHHHHHHHHHHHHhcCCeEEEEeC-cchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChh
Confidence 8888888999999999988999999999 6543 11 233444444332 35799999999999
Q ss_pred CcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChH-hHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 261 VLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDE-NLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 261 ~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~-~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
.+++++++ ||+..+++++|+.++|.+|++.++...+...+.. .+..++..+.||++++|.++|++|.+.
T Consensus 157 ~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~ 228 (262)
T 2qz4_A 157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALH 228 (262)
T ss_dssp GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC
T ss_pred hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998877654443 458899999999999999999998753
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.97 E-value=5.5e-31 Score=246.47 Aligned_cols=205 Identities=38% Similarity=0.669 Sum_probs=182.8
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 198 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 198 (330)
+.++|++++|++.+++.|.+.+..++..+..|...+ .+++++||+||||||||++|+++++.+ +.+|+.+++.++.+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSK 277 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-SSEEEEEEHHHHHTS
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-CCCEEEEEchHhhhh
Confidence 567899999999999999999999888888877654 456799999999999999999999999 789999999999999
Q ss_pred ccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCH
Q psy3808 199 WLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDA 264 (330)
Q Consensus 199 ~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~ 264 (330)
+.|+....++.+|..+....|++||||| ++ ......|+..+++.... .+++||+|||.++.+++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDE-Id~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDE-LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEES-HHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecc-hhhhccccccccchHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence 9999999999999999999999999999 53 23556788888876544 57999999999999999
Q ss_pred HHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 265 AIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 265 ~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
++++ ||+..+++++|+..+|.+||+.++...+.. .+.++..++..+.||+++||.++|++|.+
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAAL 420 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 9999 999999999999999999999998877643 56689999999999999999999999875
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=7.1e-30 Score=238.39 Aligned_cols=205 Identities=42% Similarity=0.629 Sum_probs=171.2
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
.+.++|+||+|+++++..+.+.+.. +..+..+...+ ..+++++|+||||||||+||+++++.+ +.+++.++++++..
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVE 102 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGGGGTS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEehhHHHH
Confidence 3789999999999999999998765 33444444433 455789999999999999999999999 68999999999999
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
.+.+.....++.+|+.+....|+++|||| ++.. ..+.++..+++... ...+++|++||.|+
T Consensus 103 ~~~g~~~~~v~~lfq~a~~~~p~il~IDE-Id~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~ 180 (499)
T 2dhr_A 103 MFVGVGAARVRDLFETAKRHAPCIVFIDE-IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPD 180 (499)
T ss_dssp SCTTHHHHHHHHHTTTSSSSSSCEEEEEC-GGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGG
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEeh-HHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChh
Confidence 88998888899999988877899999999 5421 22445555555543 25689999999999
Q ss_pred CcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 261 VLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 261 ~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.+|++++| ||+..+.+++|+..+|.+||+.++...+. .++.++..+|..+.||+|+||.++|++|.+
T Consensus 181 ~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~ 249 (499)
T 2dhr_A 181 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLALLAKRTPGFVGADLENLLNEAAL 249 (499)
T ss_dssp GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSSTTHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred hcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999998 99999999999999999999998876543 256779999999999999999999999864
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=1.9e-29 Score=218.17 Aligned_cols=209 Identities=43% Similarity=0.635 Sum_probs=169.0
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccC-CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
+....|..+|++++|+++++..+...+... ..+..+.. ....+++++|+||||||||+|++++++.+ +.+++.+++.
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~~~~i~~~~~ 83 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 83 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-CCCEEEeeHH
Confidence 456678999999999999999998876543 33333332 22345789999999999999999999998 6889999998
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
++...+.+.....+..+|+.+....|+++++|| ++.. ..+.++..+++.... ..++++++|
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~De-id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~-~~~i~~a~t 161 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE-IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAAT 161 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEET-HHHHHC---------CHHHHHHHHHHHHHHHTCCTT-CCEEEEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehh-hhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC-CCEEEEEcc
Confidence 888888888888889999998877899999999 5421 123455555554432 458889999
Q ss_pred CCCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 257 NIPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 257 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
|.|+.+|++++| ||+..+.++.|+.++|.+||+.++..... .++.++..+|..+.||+++||.++|++|.+
T Consensus 162 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~G~~~~dl~~~~~~a~~ 234 (254)
T 1ixz_A 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLALLAKRTPGFVGADLENLLNEAAL 234 (254)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-CTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-CcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999998 99999999999999999999998876543 255679999999999999999999998865
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=1.1e-31 Score=234.07 Aligned_cols=208 Identities=41% Similarity=0.670 Sum_probs=169.3
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCC-CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGK-RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.+.|..+|++++|.+.+++.+.+.+.. +..+..+... ..+++++||+||||||||++|++++..+ +.+++.+++..+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~v~~~~~ 80 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-HVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH-TCCCCCCCSCTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEechHHH
Confidence 456789999999999999999987754 4444444332 2345789999999999999999999999 789999999998
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh------------------HHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI------------------SNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~------------------~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
...+.+.....++.+|..+....|+|||||| ++... ...++..+++......+++||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 159 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDE-IDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN 159 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESC-GGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBS
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeC-hhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecC
Confidence 8888877766677888888888999999999 65432 2233344444333334589999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.++.+++++.+ ||+..+.+++|+.++|..+|+.++...+.. ++.++..+++.+.||+|+||.++|++|.+
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~ 231 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAAL 231 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHH
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999876543 55678889999999999999999998865
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=4.1e-28 Score=212.61 Aligned_cols=208 Identities=42% Similarity=0.621 Sum_probs=166.6
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccC-CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTG-KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
....|.++|++++|.+++++.+...+... ..+..+.. ....+++++|+||||||||+|++++++.+ +.+++.+++.+
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~~~~i~~~~~~ 108 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSD 108 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-CCCEEEecHHH
Confidence 34558899999999999999998876543 22333322 22344679999999999999999999999 68899999988
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+...+.+.....+..+|+.+....|+++|+|| ++.. ....++..+++... ...++++++||
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDe-id~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~ 186 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDE-IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATN 186 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTSCSEEEEEET-HHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEES
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEehhh-hHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecC
Confidence 88877887788889999998878899999999 5421 12234444444433 24588899999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.|+.+|++++| ||+..+.+++|+.++|.+||+.++..... .++.++..+|..+.||+++||.++|++|.+
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 258 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLALLAKRTPGFVGADLENLLNEAAL 258 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-CcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999998 99999999999999999999998876543 255679999999999999999999998864
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=3.4e-31 Score=262.20 Aligned_cols=209 Identities=38% Similarity=0.708 Sum_probs=177.0
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
....+.++|++++|++++++.|.+.+.+++.++..+...+ .++.++||+||||||||++|+++|+.+ +.+++.+++++
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~~~ 546 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPE 546 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH-TCCCCCCCCSS
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh-CCCEEEEechH
Confidence 4567889999999999999999999999988887776655 456789999999999999999999999 78999999999
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+.+.|+|+.+..++.+|+.++...|+|||||| +|.. +.+.++..++++.. ..+++||+|||
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDE-id~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~-~~~v~vI~tTN 624 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDE-LDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATN 624 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSS-HHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCB
T ss_pred hhhhhcCccHHHHHHHHHHHHhcCCeEEEEEC-hhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc-cCCeEEEEecC
Confidence 99999999999999999999999999999999 5431 12334444444333 35789999999
Q ss_pred CCCCcCHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 258 IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 258 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
.|+.+|++++| ||+..+++++|+.++|..||+.++.+.+. ..+.++..|++.+.|||++||.++|++|.+
T Consensus 625 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~~l~~la~~t~g~sgadi~~l~~~a~~ 696 (806)
T 1ypw_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLEFLAKMTNGFSGADLTEICQRACK 696 (806)
T ss_dssp SCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHH
T ss_pred CcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCC-CcccCHHHHHHhccccCHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999987654 356788999999999999999999999875
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=2.2e-26 Score=227.83 Aligned_cols=207 Identities=38% Similarity=0.658 Sum_probs=183.3
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCC-CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKR-VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
..+.++|++|+|++.+++.|.+.+.+++.++.+|...+ .++.++||+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-~~~~i~v~~~~l~ 275 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIM 275 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-TCEEEEEEHHHHS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-CCcEEEEEchHhh
Confidence 34678999999999999999999999999999988765 456789999999999999999999999 7899999999999
Q ss_pred ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcc--------------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 197 SKWLGESEKLVKTLFELARAHRPSIIFIDERID--------------RGISNALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~--------------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
+.+.++.+..++.+|+.+....|+++|+|| ++ ......++.++++.... ..+++|++||.++.+
T Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDE-id~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~-~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDE-LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSI 353 (806)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHCSEEEEEES-GGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT-SCCEEEEECSCTTTS
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCcEEEecc-HHHhhhccccccchHHHHHHHHHHHHhhhhccc-ccEEEecccCCchhc
Confidence 999999999999999999999999999999 53 23446677777776554 578999999999999
Q ss_pred CHHHHh--ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 263 DAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 263 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
++++.+ ||+..+.++.|+.+.|.+|++.++..... ..+.++..++..+.||+++++..+|++|.+
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~g~dl~~l~~ea~~ 420 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTCCTHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccchhHHHHHhhcCcchHHHHHHHHHHHH
Confidence 999998 99999999999999999999999887654 366689999999999999999999988764
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=1.7e-26 Score=203.54 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=126.1
Q ss_pred CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHH----HhcCCeEEEEeCCcch-
Q psy3808 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELA----RAHRPSIIFIDERIDR- 230 (330)
Q Consensus 156 ~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a----~~~~~~ii~iDe~~~~- 230 (330)
.+++++|||||||||||++|+++|+.+ +.+++.++++++.+.|.|..+..++.+|..+ +...|+|||||| +|.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDE-iD~~ 111 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFIND-LDAG 111 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEEC-CC--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEec-hhhh
Confidence 456899999999999999999999999 8999999999999999999999999999888 567899999999 642
Q ss_pred ---------------hhHHHHHHHHhcCC----------CCCCcEEEEecCCCCCCcCHHHHh--ccccEEEecCCCHHH
Q psy3808 231 ---------------GISNALFLLLSGVG----------NDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNA 283 (330)
Q Consensus 231 ---------------~~~~~l~~~l~~~~----------~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~ 283 (330)
.....|+.++++.. ....+++||+|||.++.++++++| ||+..++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 23367777776432 133579999999999999999997 8988776 579999
Q ss_pred HHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHH
Q psy3808 284 RLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADIST 321 (330)
Q Consensus 284 r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~ 321 (330)
|..|++.++.... .++..++..+.||++++|..
T Consensus 190 r~~Il~~~~~~~~-----~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTDN-----VPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGGC-----CCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCCC-----CCHHHHHHHhCCCCcccHHH
Confidence 9999998887543 34777888889999888753
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=1.1e-23 Score=187.01 Aligned_cols=195 Identities=19% Similarity=0.264 Sum_probs=151.8
Q ss_pred cccchHHHHHHHHHHhhcccCCccccc----CCCCCCcceEEECCCCCchHHHHHHHHHHhC------CCcEEEecccch
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFT----GKRVPWKGILLFGPPGTGKSYLAKAVATEAN------NSTFFSVSSSDL 195 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~ill~GppGtGKT~la~~la~~~~------~~~~~~~~~~~~ 195 (330)
+++|++++++.+.+.+..+.. +..+. ....+..++||+||||||||++|+++++.+. ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999988765431 11111 1123446799999999999999999999872 237999999999
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch------------hhHHHHHHHHhcCCCCCCcEEEEecCCCCC---
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR------------GISNALFLLLSGVGNDMDGILVLGATNIPW--- 260 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~------------~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~--- 260 (330)
.+.+.|.....+..+|..+ .++|||||| ++. ...+.++..++. ...++++|++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDE-id~l~~~~~~~~~~~~~~~~Ll~~l~~---~~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDE-AYYLYRPDNERDYGQEAIEILLQVMEN---NRDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEET-GGGSCCCC---CCTHHHHHHHHHHHHH---CTTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEC-hhhhccCCCcccccHHHHHHHHHHHhc---CCCCEEEEEeCChHHHHH
Confidence 9999998888888888766 468999999 653 233455555554 335678888887653
Q ss_pred --CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHc-------CCCCHHHHHHHHhhccc
Q psy3808 261 --VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRT-------EGYSGADISTLERNFKV 328 (330)
Q Consensus 261 --~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~-------~g~~~~di~~l~~~a~~ 328 (330)
.++|++++||+..+.|++|+.+++..|++.++...+..+++..+..++... ..-+++++.++++.|..
T Consensus 184 ~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 184 FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999888888888888888873 22347899999988764
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=2.5e-25 Score=207.91 Aligned_cols=187 Identities=24% Similarity=0.304 Sum_probs=131.9
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC--CcEEEecccchh
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN--STFFSVSSSDLV 196 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~--~~~~~~~~~~~~ 196 (330)
.|...|++++|++++++.+...+... ..+..+++++||+||||||||++|+++|+.+ + .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHH
Confidence 45667899999999999988776432 2334466899999999999999999999999 6 799999999999
Q ss_pred ccccChhHHHHHHHHHHH---HhcCCeEEEEeCCcchhh---------------------------------HHHHHHHH
Q psy3808 197 SKWLGESEKLVKTLFELA---RAHRPSIIFIDERIDRGI---------------------------------SNALFLLL 240 (330)
Q Consensus 197 ~~~~~~~~~~~~~~f~~a---~~~~~~ii~iDe~~~~~~---------------------------------~~~l~~~l 240 (330)
+.|.|+++. +..+|..+ +...|+|||||| +|... ...++..+
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDE-id~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l 180 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGE-VTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEE-EEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEec-hhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHH
Confidence 999999987 89999998 778899999999 54221 11233334
Q ss_pred hcCC-CCCCcEEEEecCCCCCCcCHHHHh--cccc--EEEecCCC--HHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCC
Q psy3808 241 SGVG-NDMDGILVLGATNIPWVLDAAIRR--RFEK--RIYIALPE--LNARLFMFRHHLGNTRNTISDENLKELAKRTEG 313 (330)
Q Consensus 241 ~~~~-~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~--~i~~~~p~--~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g 313 (330)
+... ...+.++|++|||.++.+++++.| ||+. .+++|.|+ ...|.+|++.+. ..++..++..++|
T Consensus 181 ~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~a~~t~g 252 (456)
T 2c9o_A 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVANARPQG 252 (456)
T ss_dssp HHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHTC-----
T ss_pred hhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHHHHhCCC
Confidence 3211 223446667999999999999876 9988 56777774 467777765432 3479999999999
Q ss_pred CCHHHHHHHHhh
Q psy3808 314 YSGADISTLERN 325 (330)
Q Consensus 314 ~~~~di~~l~~~ 325 (330)
|+||.++|..
T Consensus 253 --gadl~~l~~~ 262 (456)
T 2c9o_A 253 --GQDILSMMGQ 262 (456)
T ss_dssp ------------
T ss_pred --hhHHHHHHhh
Confidence 9999999854
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=3.3e-22 Score=181.90 Aligned_cols=201 Identities=17% Similarity=0.224 Sum_probs=144.9
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC-CcEEEecccchhc
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN-STFFSVSSSDLVS 197 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~~~~~~ 197 (330)
.|...|++++|.+.+++.+....... ..+..+++++||+||||||||++|+++++.+.. .+++.+++..+.+
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 34556999999999988866544221 223344579999999999999999999999942 3788887766444
Q ss_pred cccChh-------------------------------------------------HHHHHHHHHHHHh-----c----CC
Q psy3808 198 KWLGES-------------------------------------------------EKLVKTLFELARA-----H----RP 219 (330)
Q Consensus 198 ~~~~~~-------------------------------------------------~~~~~~~f~~a~~-----~----~~ 219 (330)
.+.+.. ...++..+..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 333221 2223333333221 1 26
Q ss_pred eEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecC-----------CCCCCcCHHHHhccccEEEecCCCHHHHHHHH
Q psy3808 220 SIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGAT-----------NIPWVLDAAIRRRFEKRIYIALPELNARLFMF 288 (330)
Q Consensus 220 ~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt-----------n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il 288 (330)
+|||||| ++......+..++..+......++++++. |.+..+++++++||.. +.|++|+.+++..++
T Consensus 191 ~vl~IDE-i~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 191 GVLFIDE-VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQIL 268 (368)
T ss_dssp CEEEEES-GGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHH
T ss_pred ceEEEhh-ccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHH
Confidence 7999999 77655555444444444444456666554 3578899999999965 899999999999999
Q ss_pred HHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhccc
Q psy3808 289 RHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKV 328 (330)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~ 328 (330)
+..+...+..+++..+..+++.+.|.+++++.++++.|..
T Consensus 269 ~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 269 RIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp HHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999887878899999999999996688889999888753
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=9.3e-21 Score=170.37 Aligned_cols=194 Identities=20% Similarity=0.265 Sum_probs=145.8
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
+...+.+.+|++++|.+.+++.+...+..... .+.+..++||+||||||||++|+++++.+ +.+|+.+++..
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~-~~~~~~~~~~~ 90 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEM-SANIKTTAAPM 90 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHT-TCCEEEEEGGG
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEEecchh
Confidence 34556677999999999999999988854321 12344689999999999999999999999 78899988876
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCCC---------------CCCcEEEEecC
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVGN---------------DMDGILVLGAT 256 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~~---------------~~~~v~vi~tt 256 (330)
+.. ...+...+.. ...+++||||| ++. .....++..++.... ...++.+|++|
T Consensus 91 ~~~------~~~~~~~~~~--~~~~~vl~lDE-i~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 91 IEK------SGDLAAILTN--LSEGDILFIDE-IHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp CCS------HHHHHHHHHT--CCTTCEEEEET-GGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred ccc------hhHHHHHHHh--ccCCCEEEEec-hhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 531 1222222221 24678999999 664 445566666654321 11248899999
Q ss_pred CCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 257 NIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 257 n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
|....+++++++||+..+.+++|+.+++..+++.++...+..+++..+..+++.+.|.. +.+.++++.+
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~ 230 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP-RIALRLLKRV 230 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH-HHHHHHHHHH
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999988877788889999999777654 5666766654
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.85 E-value=1.6e-20 Score=167.72 Aligned_cols=193 Identities=21% Similarity=0.272 Sum_probs=145.6
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 197 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 197 (330)
.+.+.+|++++|.+.+++.+...+..... .+.++.+++|+||||||||++|+++++.+ +.+++.+++..+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~-~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHH-TCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeccccCC
Confidence 45667899999999999999887743211 11234689999999999999999999999 68888888766532
Q ss_pred cccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh---hHHHHHHHHhcCCC---------------CCCcEEEEecCCCC
Q psy3808 198 KWLGESEKLVKTLFELARAHRPSIIFIDERIDRG---ISNALFLLLSGVGN---------------DMDGILVLGATNIP 259 (330)
Q Consensus 198 ~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~---------------~~~~v~vi~ttn~~ 259 (330)
...+...+..+ ...+++||||| ++.. ....++..++.... ...++.+|++||.+
T Consensus 77 ------~~~l~~~l~~~-~~~~~~l~lDE-i~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~ 148 (324)
T 1hqc_A 77 ------PGDLAAILANS-LEEGDILFIDE-IHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP 148 (324)
T ss_dssp ------HHHHHHHHTTT-CCTTCEEEETT-TTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC
T ss_pred ------hHHHHHHHHHh-ccCCCEEEEEC-CcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc
Confidence 11222222210 14678999999 6543 45556666664320 11357899999999
Q ss_pred CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcc
Q psy3808 260 WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFK 327 (330)
Q Consensus 260 ~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~ 327 (330)
..+++++.+||+..+.+++|+.+++..+++.++...+..+++..+..|+..+.|+. +.+.++++.+.
T Consensus 149 ~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~~ 215 (324)
T 1hqc_A 149 GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRVR 215 (324)
T ss_dssp SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHHT
T ss_pred ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHHH
Confidence 99999999999889999999999999999999988887889999999999998765 57777777654
No 35
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.84 E-value=7.5e-21 Score=177.88 Aligned_cols=192 Identities=21% Similarity=0.310 Sum_probs=137.9
Q ss_pred cccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------
Q psy3808 112 EGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--------- 182 (330)
Q Consensus 112 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--------- 182 (330)
...+.....+.+|++++|.++.++.+...+.. ...+++||+||||||||++|+++|..+
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l 234 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence 33444556678899999999999998887732 123589999999999999999999987
Q ss_pred CCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCC--
Q psy3808 183 NNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPW-- 260 (330)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~-- 260 (330)
.+.+++.+++. ..|.|..+..++.+|..+....++|||||. .....+.+.. .+ . ...+.+|++||.+.
T Consensus 235 ~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~---~L-~-~g~v~vI~at~~~e~~ 304 (468)
T 3pxg_A 235 RDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKP---SL-A-RGELQCIGATTLDEYR 304 (468)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEECC----------CC---CT-T-SSSCEEEEECCTTTTH
T ss_pred cCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEeC--chhHHHHHHH---hh-c-CCCEEEEecCCHHHHH
Confidence 35678888876 566777777788899988888899999993 1122222222 22 2 24688999999886
Q ss_pred ---CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC----CCCCCChHhHHHHHHHcCCCCH-----HHHHHHHhhc
Q psy3808 261 ---VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN----TRNTISDENLKELAKRTEGYSG-----ADISTLERNF 326 (330)
Q Consensus 261 ---~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~~~g~~~-----~di~~l~~~a 326 (330)
.+++++.+||. .+.|+.|+.+++..|++.++.. ++..+++..+..++..+.+|.+ ....+++.+|
T Consensus 305 ~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a 381 (468)
T 3pxg_A 305 KYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (468)
T ss_dssp HHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHH
Confidence 68999999996 5999999999999999988876 5677889999999988777654 3455555544
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=7e-21 Score=168.87 Aligned_cols=200 Identities=23% Similarity=0.338 Sum_probs=142.4
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccC--CCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc-cccCh
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTG--KRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS-KWLGE 202 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~~~ 202 (330)
+++|++.+++.+...+..+.....+... .+.++.++||+||||||||++|++++..+ +.+++.++++.+.. .|.|.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGGSSCCSGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEcchhcccCCccCc
Confidence 5899999999999887553222211110 11234689999999999999999999999 78999999988765 45543
Q ss_pred h-HHHHHHHHHHH-----HhcCCeEEEEeCCcchhh---------------HHHHHHHHhcCCC-------CCCcEEEEe
Q psy3808 203 S-EKLVKTLFELA-----RAHRPSIIFIDERIDRGI---------------SNALFLLLSGVGN-------DMDGILVLG 254 (330)
Q Consensus 203 ~-~~~~~~~f~~a-----~~~~~~ii~iDe~~~~~~---------------~~~l~~~l~~~~~-------~~~~v~vi~ 254 (330)
. ...+..++..+ ....++|||||| ++... .+.++..+++... ...++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE-i~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDE-IDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEEC-GGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEC-hhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 2 34455555422 112368999999 65432 5667777775310 224678888
Q ss_pred c----CCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHH-----------h--cCCCCCCChHhHHHHHHHcC-----
Q psy3808 255 A----TNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHH-----------L--GNTRNTISDENLKELAKRTE----- 312 (330)
Q Consensus 255 t----tn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~-----------l--~~~~~~~~~~~~~~la~~~~----- 312 (330)
+ ++.+..+++++.+||+..+.|++|+.+++..|++.. + ......+++..+..|++.+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 253 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 253 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc
Confidence 7 567788999999999988999999999999999831 1 12223468888999998872
Q ss_pred --CCCHHHHHHHHhhcc
Q psy3808 313 --GYSGADISTLERNFK 327 (330)
Q Consensus 313 --g~~~~di~~l~~~a~ 327 (330)
+...+.+.++++.++
T Consensus 254 ~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 254 TENIGARRLHTVMERLM 270 (310)
T ss_dssp SCCCTTHHHHHHHHHHS
T ss_pred ccccCcHHHHHHHHHHH
Confidence 456778888888765
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=1e-20 Score=179.81 Aligned_cols=195 Identities=22% Similarity=0.290 Sum_probs=132.6
Q ss_pred CcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc-----
Q psy3808 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS----- 197 (330)
Q Consensus 123 ~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~----- 197 (330)
-.++++|++++++.+.+.+........ .++..++|+||||||||++|++++..+ +.++..+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecccchhhhhh
Confidence 346799999999999877654322111 145689999999999999999999999 78899988876433
Q ss_pred ----cccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhH-------HHHHHHHhcCCC------------CCCcEEEEe
Q psy3808 198 ----KWLGESEKLVKTLFELARAHRPSIIFIDERIDRGIS-------NALFLLLSGVGN------------DMDGILVLG 254 (330)
Q Consensus 198 ----~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~-------~~l~~~l~~~~~------------~~~~v~vi~ 254 (330)
.|.|.....+...|..+....| |+|||| ++.... +.++..++.... +..+++||+
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDE-id~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDE-IDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEE-SSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhh-hhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 4555555666667776655555 999999 664332 344444442211 114689999
Q ss_pred cCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhc-----CC-----CCCCChHhHHHHHHHcCCC-CH----HHH
Q psy3808 255 ATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLG-----NT-----RNTISDENLKELAKRTEGY-SG----ADI 319 (330)
Q Consensus 255 ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~-----~~-----~~~~~~~~~~~la~~~~g~-~~----~di 319 (330)
|||.++.++++|++|| ..+.|+.|+.+++..|++.++- .. ...+++..+..++....+. .. +.|
T Consensus 230 ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i 308 (543)
T 3m6a_A 230 TANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQL 308 (543)
T ss_dssp ECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHH
T ss_pred ccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHH
Confidence 9999999999999999 5799999999999999988762 12 2345677888877755443 33 455
Q ss_pred HHHHhhcc
Q psy3808 320 STLERNFK 327 (330)
Q Consensus 320 ~~l~~~a~ 327 (330)
..+|+.|.
T Consensus 309 ~~~~~~aa 316 (543)
T 3m6a_A 309 AAICRKAA 316 (543)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55665543
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=4e-20 Score=165.25 Aligned_cols=186 Identities=22% Similarity=0.192 Sum_probs=138.3
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.+..++.+.+|++++|.+++++.+..++. .+..++.+|++||||||||++|+++++.+ +.+++.++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l-~~~~~~i~~~ 82 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDV-NADMMFVNGS 82 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHT-TEEEEEEETT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHh-CCCEEEEccc
Confidence 45567788999999999999999998884 12333568888999999999999999999 7889999876
Q ss_pred chhccccChhHHHHHHHHHH-HHh----cCCeEEEEeCCcchhh----HHHHHHHHhcCCCCCCcEEEEecCCCCCCcCH
Q psy3808 194 DLVSKWLGESEKLVKTLFEL-ARA----HRPSIIFIDERIDRGI----SNALFLLLSGVGNDMDGILVLGATNIPWVLDA 264 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~-a~~----~~~~ii~iDe~~~~~~----~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~ 264 (330)
+.. ...++..+.. +.. ..+.|||||| ++... .+.+...++.. ..++.+|++||.+..+++
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDE-i~~l~~~~~~~~L~~~le~~---~~~~~iI~~~n~~~~l~~ 151 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDE-FDRSGLAESQRHLRSFMEAY---SSNCSIIITANNIDGIIK 151 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEES-CCCGGGHHHHHHHHHHHHHH---GGGCEEEEEESSGGGSCT
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEEC-CcccCcHHHHHHHHHHHHhC---CCCcEEEEEeCCccccCH
Confidence 632 2233333332 222 1568999999 76544 44555555543 345788889999999999
Q ss_pred HHHhccccEEEecCCCHHHHHHHHHH-------HhcCCCCCCCh-HhHHHHHHHcCCCCHHHHHHHH
Q psy3808 265 AIRRRFEKRIYIALPELNARLFMFRH-------HLGNTRNTISD-ENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 265 ~l~~Rf~~~i~~~~p~~~~r~~il~~-------~l~~~~~~~~~-~~~~~la~~~~g~~~~di~~l~ 323 (330)
++.+|| ..+.|++|+.+++..|++. .+...+..+++ ..+..+++.+.|.....+..+.
T Consensus 152 ~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~ 217 (324)
T 3u61_B 152 PLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELD 217 (324)
T ss_dssp THHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHH
T ss_pred HHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999 5799999998887655443 34455666777 8899999999998887665544
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.83 E-value=2.1e-19 Score=151.16 Aligned_cols=187 Identities=21% Similarity=0.168 Sum_probs=136.2
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----CCcEEEec
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----NSTFFSVS 191 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----~~~~~~~~ 191 (330)
...+++..|++++|.+..++.+...+... ...+++|+||||||||+++++++..+. ...++.++
T Consensus 8 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 34567889999999999999999887421 123599999999999999999998761 23567776
Q ss_pred ccchhccccChhHHHHHHHH-HHHH-----hcCCeEEEEeCCcchh---hHHHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 192 SSDLVSKWLGESEKLVKTLF-ELAR-----AHRPSIIFIDERIDRG---ISNALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f-~~a~-----~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
+....+ ...+...+ .... ...+.+|+||| ++.. ..+.+...++. ...++.+|++||.+..+
T Consensus 76 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe-~~~l~~~~~~~l~~~l~~---~~~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 76 ASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDE-ADALTADAQAALRRTMEM---YSKSCRFILSCNYVSRI 145 (226)
T ss_dssp TTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEET-GGGSCHHHHHHHHHHHHH---TTTTEEEEEEESCGGGS
T ss_pred cccccC------hHHHHHHHHHHhcccCCCccCceEEEEeC-hhhcCHHHHHHHHHHHHh---cCCCCeEEEEeCChhhc
Confidence 654322 11122222 2222 24678999999 6654 34455555554 23567788889999999
Q ss_pred CHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 263 DAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 263 ~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
++++.+||. .+.+++|+.++...+++..+...+..+++..+..+++.+.|... .+.++++.+
T Consensus 146 ~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r-~l~~~l~~~ 207 (226)
T 2chg_A 146 IEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFR-KAINALQGA 207 (226)
T ss_dssp CHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred CHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHH
Confidence 999999996 89999999999999999988777777888899999999988555 444444443
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=5.5e-20 Score=160.33 Aligned_cols=165 Identities=24% Similarity=0.300 Sum_probs=119.7
Q ss_pred CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh-ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh---
Q psy3808 156 VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV-SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--- 231 (330)
Q Consensus 156 ~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--- 231 (330)
.+++++||+||||||||++|++++..+ +.+++.+++.+.. +...+.....++.+|..+....+++||||| ++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~-~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDE-id~l~~~ 139 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES-NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDD-IERLLDY 139 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH-TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECC-HHHHTTC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh-CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEC-hhhhhcc
Confidence 345789999999999999999999998 7888888776422 111122235677888888777889999999 6543
Q ss_pred ----------hHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCH-HHHhccccEEEecCCCH-HHHHHHHHHHhcCCCCCC
Q psy3808 232 ----------ISNALFLLLSGVGNDMDGILVLGATNIPWVLDA-AIRRRFEKRIYIALPEL-NARLFMFRHHLGNTRNTI 299 (330)
Q Consensus 232 ----------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~-~l~~Rf~~~i~~~~p~~-~~r~~il~~~l~~~~~~~ 299 (330)
..+.+...+........++++|+|||.++.+++ .+.+||...+.+|+++. ++...++... . .+
T Consensus 140 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~---~--~~ 214 (272)
T 1d2n_A 140 VPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL---G--NF 214 (272)
T ss_dssp BTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH---T--CS
T ss_pred CCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc---C--CC
Confidence 233444444444334457889999999988888 67789988888877665 4444554432 2 35
Q ss_pred ChHhHHHHHHHcCCC----CHHHHHHHHhhcc
Q psy3808 300 SDENLKELAKRTEGY----SGADISTLERNFK 327 (330)
Q Consensus 300 ~~~~~~~la~~~~g~----~~~di~~l~~~a~ 327 (330)
++.++..+++.+.|| ..+++.++++.|.
T Consensus 215 ~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 215 KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 788899999999997 5677777777664
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=3.7e-19 Score=158.98 Aligned_cols=192 Identities=19% Similarity=0.249 Sum_probs=135.0
Q ss_pred CCCCCccccc-c--hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEeccc
Q psy3808 119 KPNVKWTDVA-G--LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSS 193 (330)
Q Consensus 119 ~~~~~~~~~~-G--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~ 193 (330)
.|..+|++++ | ...+...+...+..+ +..+++++|+||||||||++|+++++.+. +.+++.+++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3567899997 4 455555666555322 12346899999999999999999999872 5688899988
Q ss_pred chhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCC---CcCHH
Q psy3808 194 DLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPW---VLDAA 265 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~---~l~~~ 265 (330)
++...+.+.........|.... ..+++||||| ++. .....+...+...... ...+|+++++.+. .++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDE-i~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~~~~~~l~~l~~~ 151 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDD-VQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDRHPQKLDGVSDR 151 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEEC-GGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESSCGGGCTTSCHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcC-cccccCChHHHHHHHHHHHHHHHC-CCeEEEEecCChHHHHHhhhH
Confidence 7755444332221112222222 2478999999 654 3345555565543322 3466777777766 68899
Q ss_pred HHhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 266 IRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 266 l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
+.+||. ..+.+++ +.+++..|++..+...+..+++..+..|++.+ | ..+++.+++..+
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~ 211 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLI 211 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHH
Confidence 999996 5689999 99999999999998888888999999999999 5 455666666554
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.81 E-value=1.6e-19 Score=163.89 Aligned_cols=200 Identities=23% Similarity=0.323 Sum_probs=138.5
Q ss_pred ccchHHHHHHHHHHhhcccCCccc---ccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc-ccCh
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQL---FTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK-WLGE 202 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~~ 202 (330)
|+|++.+++.+...+......... ......++.++||+||||||||++|+++|..+ +.+|+.++++++... |.|.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-DVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHTTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEechHHhcccccccc
Confidence 799999999998887432211111 01122355789999999999999999999999 789999999988744 6666
Q ss_pred h-HHHHHHHHHHH----HhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCCC----------CCCcE
Q psy3808 203 S-EKLVKTLFELA----RAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVGN----------DMDGI 250 (330)
Q Consensus 203 ~-~~~~~~~f~~a----~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~~----------~~~~v 250 (330)
. ...+..+|..+ ....++|||||| ++.. +.+.|+..+++... ....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDE-id~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQ-IDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEEC-HHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeC-hhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 5 45566666654 334578999999 5421 67888888884210 01123
Q ss_pred EEEecCCC--------C----------CC-----------------------------------cCHHHHhccccEEEec
Q psy3808 251 LVLGATNI--------P----------WV-----------------------------------LDAAIRRRFEKRIYIA 277 (330)
Q Consensus 251 ~vi~ttn~--------~----------~~-----------------------------------l~~~l~~Rf~~~i~~~ 277 (330)
++|+|||. . .. +.|+|.+||+.++.|+
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~ 254 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLN 254 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECC
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecC
Confidence 34444443 1 01 6899999999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------cC--CCCCCChHhHHHHHHH--cCCCCHHHHHHHHhhccc
Q psy3808 278 LPELNARLFMFRH----HL-------GN--TRNTISDENLKELAKR--TEGYSGADISTLERNFKV 328 (330)
Q Consensus 278 ~p~~~~r~~il~~----~l-------~~--~~~~~~~~~~~~la~~--~~g~~~~di~~l~~~a~~ 328 (330)
+|+.+.+..|+.. ++ .. ....+++..+..|++. ...+..++|.+++++++.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALL 320 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHH
Confidence 9999999998875 21 22 2234678888899864 455666888888877654
No 43
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.81 E-value=2.3e-19 Score=153.01 Aligned_cols=190 Identities=22% Similarity=0.228 Sum_probs=138.2
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc---------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--------- 186 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--------- 186 (330)
...+.+..|++++|.+..++.+...+.. +..++.++|+||||||||++++++++.+....
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456778899999999999999988742 12234799999999999999999999872211
Q ss_pred --------------EEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchh---hHHHHHHHHhcCCC
Q psy3808 187 --------------FFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRG---ISNALFLLLSGVGN 245 (330)
Q Consensus 187 --------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~ 245 (330)
++.++... ......+..++.... ...+.+|+||| ++.. ..+.+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe-~~~l~~~~~~~l~~~l~~--- 152 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDE-VHMLSRHSFNALLKTLEE--- 152 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEET-GGGSCHHHHHHHHHHHHS---
T ss_pred cHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEEC-cccccHHHHHHHHHHHhc---
Confidence 11111110 012233444444332 23578999999 6653 34445555543
Q ss_pred CCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 246 DMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 246 ~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
...++.+|++|+.+..+++.+.+|+ ..+.+++++.++...+++..+...+..+++..+..+++.+.| +++.+.++++.
T Consensus 153 ~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~ 230 (250)
T 1njg_A 153 PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQ 230 (250)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 3456888888888889999999997 679999999999999999998877777788889999999988 67788888887
Q ss_pred ccc
Q psy3808 326 FKV 328 (330)
Q Consensus 326 a~~ 328 (330)
|..
T Consensus 231 ~~~ 233 (250)
T 1njg_A 231 AIA 233 (250)
T ss_dssp HHT
T ss_pred HHh
Confidence 753
No 44
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.80 E-value=6.1e-19 Score=156.91 Aligned_cols=192 Identities=21% Similarity=0.173 Sum_probs=141.0
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----CCcEEEe
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----NSTFFSV 190 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----~~~~~~~ 190 (330)
+..++.+.+|++++|.+.+++.+...+.. ... .+++|+||||||||++|+++++.+. +.+++.+
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----------~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 74 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER----------KNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTTTT----------TCC--CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHHhC----------CCC--CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE
Confidence 44567888999999999999998876621 222 2499999999999999999999862 2346777
Q ss_pred cccchhccccChhHHHHHHHHHHH-H-hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHh
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFELA-R-AHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR 268 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~a-~-~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~ 268 (330)
++++..+. ......+....... . ...+.||+||| ++.........++..+.....++.+|++||.+..+.+++.+
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe-~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 75 NASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDE-ADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEET-GGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred eCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeC-CCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 77654321 11112222221100 1 13478999999 77766555555555555555678888899999999999999
Q ss_pred ccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 269 RFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 269 Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
||. .+.|++|+.+++..++...+...+..+++..+..|+..++|..+..+..+
T Consensus 152 r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 995 79999999999999999999888888899999999999988666544333
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.80 E-value=4.8e-19 Score=157.21 Aligned_cols=199 Identities=17% Similarity=0.239 Sum_probs=140.3
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchhccc----
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLVSKW---- 199 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~~---- 199 (330)
+++|++.+++.+...+..... .......|..+++|+||||||||++|++++..+. +.+++.++++.+....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH---TCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhc---CCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHH
Confidence 588999999999888754211 0112233445799999999999999999999872 3568888887654321
Q ss_pred -cChhH-----HHHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCCC--------CCCcEEEEecCCC----
Q psy3808 200 -LGESE-----KLVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVGN--------DMDGILVLGATNI---- 258 (330)
Q Consensus 200 -~~~~~-----~~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~---- 258 (330)
.|... .....+........++|||||| ++. ...+.++..++.... +..++++|+|||.
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE-i~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~ 173 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA-IEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPL 173 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET-GGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHH
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeC-hhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHH
Confidence 11000 0001233334445568999999 654 455667776664321 1136779999998
Q ss_pred ----------------------CCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC---------CCCCChHhHHHH
Q psy3808 259 ----------------------PWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT---------RNTISDENLKEL 307 (330)
Q Consensus 259 ----------------------~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~---------~~~~~~~~~~~l 307 (330)
...++++|.+||+..+.+++|+.+++..|++.++... ...+++..+..|
T Consensus 174 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 253 (311)
T 4fcw_A 174 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFL 253 (311)
T ss_dssp HHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred HHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHH
Confidence 4467899999999999999999999999999877542 344688889999
Q ss_pred HHHcC--CCCHHHHHHHHhhccc
Q psy3808 308 AKRTE--GYSGADISTLERNFKV 328 (330)
Q Consensus 308 a~~~~--g~~~~di~~l~~~a~~ 328 (330)
+.... ..+.++|.+++++++.
T Consensus 254 ~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 254 AERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHhCCCccCCchhHHHHHHHHHH
Confidence 99876 6778899999988764
No 46
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.80 E-value=4.9e-19 Score=175.28 Aligned_cols=192 Identities=21% Similarity=0.301 Sum_probs=136.9
Q ss_pred cccccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------
Q psy3808 112 EGAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--------- 182 (330)
Q Consensus 112 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--------- 182 (330)
...+........+++++|.++.++.+...+.. ...+++||+||||||||++|+++|..+
T Consensus 167 ~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l 234 (758)
T 3pxi_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (758)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred HHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhh
Confidence 33444456677899999999999999887732 223579999999999999999999987
Q ss_pred CCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCC--
Q psy3808 183 NNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPW-- 260 (330)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~-- 260 (330)
.+.+++.+++ ...|.|+.+..++.+|..+....|+|||||. . ....+.+ +..+ . ...+.+|++||...
T Consensus 235 ~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~-~-~~~~~~L---~~~l-~-~~~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 235 RDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA-A-IDASNIL---KPSL-A-RGELQCIGATTLDEYR 304 (758)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEECC-------------CCCT-T-SSSCEEEEECCTTTTH
T ss_pred cCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEcC-c-hhHHHHH---HHHH-h-cCCEEEEeCCChHHHH
Confidence 2567777776 4567787788889999999988999999994 1 1122222 2222 2 24688999999887
Q ss_pred ---CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC----CCCCCChHhHHHHHHHcCC-----CCHHHHHHHHhhc
Q psy3808 261 ---VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN----TRNTISDENLKELAKRTEG-----YSGADISTLERNF 326 (330)
Q Consensus 261 ---~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~~~g-----~~~~di~~l~~~a 326 (330)
.+++++.||| ..+.|+.|+.+++..|++.++.. .+..+++..+..++..+.+ +.+.....++.+|
T Consensus 305 ~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a 381 (758)
T 3pxi_A 305 KYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (758)
T ss_dssp HHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHH
Confidence 7999999999 56999999999999999988776 4566788888888877554 4455555555554
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.79 E-value=8e-19 Score=162.66 Aligned_cols=184 Identities=22% Similarity=0.293 Sum_probs=133.4
Q ss_pred cccCCCCCcccccchHHHH---HHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 116 VMEKPNVKWTDVAGLEAAK---EALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
.....+.+|++++|++.++ ..+...+.. .. ..+++|+||||||||++|+++++.+ +.+|+.+++
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~----------~~--~~~vLL~GppGtGKTtlAr~ia~~~-~~~f~~l~a 83 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEA----------GH--LHSMILWGPPGTGKTTLAEVIARYA-NADVERISA 83 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH----------TC--CCEEEEECSTTSSHHHHHHHHHHHT-TCEEEEEET
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHc----------CC--CcEEEEECCCCCcHHHHHHHHHHHh-CCCeEEEEe
Confidence 3445678999999999998 677776632 11 1589999999999999999999999 788988876
Q ss_pred cchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhh---HHHHHHHHhcCCCCCCcEEEEecC--CCCCCcC
Q psy3808 193 SDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGI---SNALFLLLSGVGNDMDGILVLGAT--NIPWVLD 263 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~---~~~l~~~l~~~~~~~~~v~vi~tt--n~~~~l~ 263 (330)
.... ...++.++..+. ...++|||||| ++... .+.|+..++. ..+++|++| |....++
T Consensus 84 ~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDE-I~~l~~~~q~~LL~~le~-----~~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 84 VTSG-------VKEIREAIERARQNRNAGRRTILFVDE-VHRFNKSQQDAFLPHIED-----GTITFIGATTENPSFELN 150 (447)
T ss_dssp TTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEET-TTCC------CCHHHHHT-----TSCEEEEEESSCGGGSSC
T ss_pred ccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeC-hhhhCHHHHHHHHHHHhc-----CceEEEecCCCCcccccC
Confidence 4421 223444444433 34678999999 66543 4445555554 346666555 5556899
Q ss_pred HHHHhccccEEEecCCCHHHHHHHHHHHhcC-------CCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcc
Q psy3808 264 AAIRRRFEKRIYIALPELNARLFMFRHHLGN-------TRNTISDENLKELAKRTEGYSGADISTLERNFK 327 (330)
Q Consensus 264 ~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~-------~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~ 327 (330)
+++.+||. ++.+++|+.+++..+++..+.. .+..+++..+..|++.+.|... .+.++++.+.
T Consensus 151 ~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R-~lln~Le~a~ 219 (447)
T 3pvs_A 151 SALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDAR-RALNTLEMMA 219 (447)
T ss_dssp HHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHH-HHHHHHHHHH
T ss_pred HHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHH-HHHHHHHHHH
Confidence 99999995 6889999999999999999876 4455788899999999887655 4555555543
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=1e-18 Score=157.74 Aligned_cols=187 Identities=19% Similarity=0.181 Sum_probs=136.2
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC-----CCcEE
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN-----NSTFF 188 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~-----~~~~~ 188 (330)
.+..++.+.+|++++|.+++++.+...+.. +.+ .+++|+||||||||++|+++++.+. ...++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-----------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 345667888999999999999999887731 111 3599999999999999999999862 23467
Q ss_pred EecccchhccccChhHHHHHHHH-HHHH---------------hcCCeEEEEeCCcchh---hHHHHHHHHhcCCCCCCc
Q psy3808 189 SVSSSDLVSKWLGESEKLVKTLF-ELAR---------------AHRPSIIFIDERIDRG---ISNALFLLLSGVGNDMDG 249 (330)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~f-~~a~---------------~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~~~~~ 249 (330)
.+++++..+ ...++..+ .... ...+.||+||| ++.. ..+.++..++.. ...
T Consensus 94 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE-~~~l~~~~~~~Ll~~le~~---~~~ 163 (353)
T 1sxj_D 94 ELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDE-ADSMTADAQSALRRTMETY---SGV 163 (353)
T ss_dssp EECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETT-GGGSCHHHHHHHHHHHHHT---TTT
T ss_pred EEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEEC-CCccCHHHHHHHHHHHHhc---CCC
Confidence 777765321 11111111 1111 12456999999 6644 445566666553 244
Q ss_pred EEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 250 ILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 250 v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
+.+|.+||.+..+.+++.+||. .+.+++|+.++...+++..+...+..+++..+..+++.+.|.....+..+.
T Consensus 164 ~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 164 TRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp EEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666788889999999999995 799999999999999999988877788999999999999987665554443
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=1.3e-18 Score=161.49 Aligned_cols=195 Identities=15% Similarity=0.246 Sum_probs=135.4
Q ss_pred CCCCCccccc-c--hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh----CCCcEEEec
Q psy3808 119 KPNVKWTDVA-G--LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA----NNSTFFSVS 191 (330)
Q Consensus 119 ~~~~~~~~~~-G--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~----~~~~~~~~~ 191 (330)
.|..+|++++ | ...+...+...+.. .+. +++++|+||||||||+||+++++.+ ++.+++.++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKH----------PGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHS----------TTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhC----------CCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4567899988 5 33444445544422 112 4689999999999999999999987 256788888
Q ss_pred ccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch-----hhHHHHHHHHhcCCCCCCcEEEEecCCCCCC---cC
Q psy3808 192 SSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR-----GISNALFLLLSGVGNDMDGILVLGATNIPWV---LD 263 (330)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~-----~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~---l~ 263 (330)
+..+...+.+.........|.......++|||||| ++. .....++..+..+... ...+||++.+.+.. ++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDE-i~~l~~~~~~q~~l~~~l~~l~~~-~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDD-VQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEEC-GGGGSSCHHHHHHHHHHHHHHHTT-TCEEEEEESSCGGGCSSCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeC-cccccCChHHHHHHHHHHHHHHHC-CCeEEEEECCCHHHHHHHH
Confidence 88765443322211111223333333678999999 653 3455666666554332 34566666665654 78
Q ss_pred HHHHhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcc
Q psy3808 264 AAIRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFK 327 (330)
Q Consensus 264 ~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~ 327 (330)
+.+++||. ..+.+++|+.+++..|++..+...+..+++..+..|+..+.| +.+++..+++.+.
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~ 310 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 99999996 679999999999999999998877777888889999999987 5667777776653
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=5.1e-19 Score=145.35 Aligned_cols=153 Identities=24% Similarity=0.366 Sum_probs=115.0
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcE
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTF 187 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~ 187 (330)
....+..|++++|.++..+.+...+.. ..+++++|+||||||||++|+++++.+ .+.++
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 344567899999999999998887632 123679999999999999999999987 25778
Q ss_pred EEecccchh--ccccChhHHHHHHHHHHHH-hcCCeEEEEeCCcchhh-----------HHHHHHHHhcCCCCCCcEEEE
Q psy3808 188 FSVSSSDLV--SKWLGESEKLVKTLFELAR-AHRPSIIFIDERIDRGI-----------SNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 188 ~~~~~~~~~--~~~~~~~~~~~~~~f~~a~-~~~~~ii~iDe~~~~~~-----------~~~l~~~l~~~~~~~~~v~vi 253 (330)
+.+++..+. ..+.+.....+..++.... ...++||+||| ++... .+.+...+.. .++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe-~~~l~~~~~~~~~~~~~~~l~~~~~~-----~~~~~i 155 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE-LHTMVGAGKADGAMDAGNMLKPALAR-----GELHCV 155 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEET-GGGGTT------CCCCHHHHHHHHHT-----TSCCEE
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeC-HHHHhccCcccchHHHHHHHHHhhcc-----CCeEEE
Confidence 888887765 3444555666677776553 45678999999 66543 4445444432 457778
Q ss_pred ecCCCCC-----CcCHHHHhccccEEEecCCCHHHHHHHH
Q psy3808 254 GATNIPW-----VLDAAIRRRFEKRIYIALPELNARLFMF 288 (330)
Q Consensus 254 ~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il 288 (330)
++||.+. .+++++.+||. .+.+++|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 8887765 68999999997 6999999999998775
No 51
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.79 E-value=4.5e-19 Score=175.58 Aligned_cols=196 Identities=18% Similarity=0.233 Sum_probs=142.9
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccCh
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGE 202 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~ 202 (330)
.+++|++.+++.+...+..... .......|..++||+||||||||++|++++..+ .+.+|+.++++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA---GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT---TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 4699999999999888854321 111223344479999999999999999999997 35689999999998776554
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC--------CCCcEEEEecCCCCCC----------
Q psy3808 203 SEKLVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVGN--------DMDGILVLGATNIPWV---------- 261 (330)
Q Consensus 203 ~~~~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~~~---------- 261 (330)
...++...+..+++|||||| ++ ....+.|+..++...- ...++++|+|||.+..
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDE-i~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~ 642 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDA-IEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELK 642 (758)
T ss_dssp -------CHHHHHHCSSSEEEEEC-GGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHH
T ss_pred ----cchhhHHHHhCCCeEEEEeC-ccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHH
Confidence 22334445556778999999 55 4556677777765321 2346789999997654
Q ss_pred --cCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC---------CCCCChHhHHHHHHH--cCCCCHHHHHHHHhhccc
Q psy3808 262 --LDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT---------RNTISDENLKELAKR--TEGYSGADISTLERNFKV 328 (330)
Q Consensus 262 --l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~---------~~~~~~~~~~~la~~--~~g~~~~di~~l~~~a~~ 328 (330)
+.|+|++||+.++.|++|+.+++..|++.++... ...+++..+..|++. ...+..++|.++++++..
T Consensus 643 ~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 643 RAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVE 722 (758)
T ss_dssp HHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTH
T ss_pred hhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Confidence 7899999999999999999999999998876542 335688889999875 344566788888877653
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.7e-18 Score=154.56 Aligned_cols=192 Identities=21% Similarity=0.183 Sum_probs=137.5
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC----CcEEE
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN----STFFS 189 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~----~~~~~ 189 (330)
.+..++.+.+|++++|.+.+++.+...+.. +.. .+++|+||||||||++|+++++.+.+ ..++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----------~~~--~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKT----------GSM--PHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHH----------TCC--CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHc----------CCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 455668889999999999999999987742 112 35999999999999999999998622 24667
Q ss_pred ecccchhccccChhHHHHHHHHHHH-H-hcCCeEEEEeCCcchh---hHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCH
Q psy3808 190 VSSSDLVSKWLGESEKLVKTLFELA-R-AHRPSIIFIDERIDRG---ISNALFLLLSGVGNDMDGILVLGATNIPWVLDA 264 (330)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~f~~a-~-~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~ 264 (330)
+++++..+. ......+....... . ...+.+|+||| ++.. ..+.+...++. ...++.+|++||.+..+.+
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe-~~~l~~~~~~~L~~~le~---~~~~~~~i~~~~~~~~l~~ 155 (327)
T 1iqp_A 82 LNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDE-ADALTQDAQQALRRTMEM---FSSNVRFILSCNYSSKIIE 155 (327)
T ss_dssp EETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEET-GGGSCHHHHHHHHHHHHH---TTTTEEEEEEESCGGGSCH
T ss_pred eeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeC-CCcCCHHHHHHHHHHHHh---cCCCCeEEEEeCCccccCH
Confidence 766543221 00111111111000 1 13578999999 6654 34455555554 3356778888999999999
Q ss_pred HHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhh
Q psy3808 265 AIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325 (330)
Q Consensus 265 ~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~ 325 (330)
++.+||. .+.|++|+.++...+++..+...+..+++..+..+++.+.|..+..+ ++++.
T Consensus 156 ~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~-~~l~~ 214 (327)
T 1iqp_A 156 PIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI-NILQA 214 (327)
T ss_dssp HHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred HHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHH-HHHHH
Confidence 9999995 79999999999999999999888877899999999999988665444 44433
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=9.2e-19 Score=165.84 Aligned_cols=203 Identities=18% Similarity=0.156 Sum_probs=138.0
Q ss_pred ccccccCCCCCcccccchHHHHHHHHHHhhcccC-CcccccCCC----CCCcceEEECCCCCchHHHHHHHHHHhCCCcE
Q psy3808 113 GAIVMEKPNVKWTDVAGLEAAKEALKEAVILPIK-FPQLFTGKR----VPWKGILLFGPPGTGKSYLAKAVATEANNSTF 187 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~-~~~~~~~~~----~~~~~ill~GppGtGKT~la~~la~~~~~~~~ 187 (330)
..+..++.+.+|++++|.+.+++.+..++..... .+..+...+ .+++++||+||||||||++|+++|+++ +.++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~~~~ 105 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-GYDI 105 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-TCEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-CCCE
Confidence 3556678889999999999999999998854211 111122111 244789999999999999999999999 7899
Q ss_pred EEecccchhccccChhHH-------HHHHHHHHH-----HhcCCeEEEEeCCcchh------hHHHHHHHHhcCCCCCCc
Q psy3808 188 FSVSSSDLVSKWLGESEK-------LVKTLFELA-----RAHRPSIIFIDERIDRG------ISNALFLLLSGVGNDMDG 249 (330)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~-------~~~~~f~~a-----~~~~~~ii~iDe~~~~~------~~~~l~~~l~~~~~~~~~ 249 (330)
+.++++++.+.+...... .+..+|..+ ....++|||||| ++.. ....+..++... ...
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDE-id~l~~~~~~~l~~L~~~l~~~---~~~ 181 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDE-VDGMSGGDRGGVGQLAQFCRKT---STP 181 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECS-GGGCCTTSTTHHHHHHHHHHHC---SSC
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEEC-CCccchhhHHHHHHHHHHHHhc---CCC
Confidence 999988765432111000 011222222 124678999999 6533 225566666542 234
Q ss_pred EEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 250 ILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 250 v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
+++|+++.....+. .+.+|+ ..+.|++|+.+++..++...+...+..+++..+..|++.+.|.....+..+
T Consensus 182 iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 182 LILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 66665554434443 455554 689999999999999999888777777888889999999988666555444
No 54
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=2.4e-18 Score=153.30 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=137.1
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----CCcEEEe
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----NSTFFSV 190 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----~~~~~~~ 190 (330)
+..++.+..|++++|.+.+++.+...+.. ...+ +++|+||||+|||++|+++++.+. +..++.+
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKD----------GNMP--HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHS----------CCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHc----------CCCC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 34567788999999999999999988732 2222 499999999999999999999862 2346777
Q ss_pred cccchhccccChhHHHHHHHHHHHH-------hcCCeEEEEeCCcchhh---HHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 191 SSSDLVSKWLGESEKLVKTLFELAR-------AHRPSIIFIDERIDRGI---SNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~f~~a~-------~~~~~ii~iDe~~~~~~---~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
++.+..+ ...++.++.... ...+.||+||| ++... .+.+...+.. ...++.+|.+||.+.
T Consensus 79 ~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe-~~~l~~~~~~~L~~~le~---~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 79 NASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDE-ADSMTAGAQQALRRTMEL---YSNSTRFAFACNQSN 148 (323)
T ss_dssp CTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEES-GGGSCHHHHHTTHHHHHH---TTTTEEEEEEESCGG
T ss_pred cCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEEC-cccCCHHHHHHHHHHHhc---cCCCceEEEEeCChh
Confidence 7654311 223344444333 23478999999 76543 3445555544 335677788888889
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
.+.+++.+|+. .+.|++|+.++...+++..+...+..+++..+..+++.++|..+..+..+
T Consensus 149 ~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 149 KIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999995 79999999999999999988777777888899999999988776555444
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.77 E-value=3.3e-18 Score=155.62 Aligned_cols=191 Identities=20% Similarity=0.220 Sum_probs=135.2
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc---------
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--------- 186 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--------- 186 (330)
..++.+..|++++|.+.+++.+...+.. +..++.++|+||||||||++|+++++.+.+..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 3457778999999999999999988732 12235789999999999999999999883211
Q ss_pred --------------EEEecccchhccccChhHHHHHHHHHHHH----hcCCeEEEEeCCcchhhHHHHHHHHhcCCCCCC
Q psy3808 187 --------------FFSVSSSDLVSKWLGESEKLVKTLFELAR----AHRPSIIFIDERIDRGISNALFLLLSGVGNDMD 248 (330)
Q Consensus 187 --------------~~~~~~~~~~~~~~~~~~~~~~~~f~~a~----~~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~ 248 (330)
++.++...- . ....++.++..+. ...+.||+||| ++......+..++..+.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~~~vliiDe-~~~l~~~~~~~Ll~~le~~~~ 148 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASR--T----KVEDTRDLLDNVQYAPARGRFKVYLIDE-VHMLSRHSFNALLKTLEEPPE 148 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCS--C----CSSCHHHHHHHTTSCCSSSSSEEEEEEC-GGGSCHHHHHHHHHHHHSCCS
T ss_pred cHHHHHHhccCCCceEEeccccc--C----CHHHHHHHHHHHhhccccCCeEEEEEEC-cchhcHHHHHHHHHHHhcCCC
Confidence 122222110 0 0112344444433 23468999999 665443333333333333446
Q ss_pred cEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 249 GILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 249 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
++++|++|+.+..+.+.+.+|+ ..+.+++|+.++...+++..+...+..+++..+..+++.++|. ...+.++++.+
T Consensus 149 ~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~-~r~~~~~l~~~ 224 (373)
T 1jr3_A 149 HVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS-LRDALSLTDQA 224 (373)
T ss_dssp SEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC-HHHHHHHHHHH
T ss_pred ceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC-HHHHHHHHHHH
Confidence 7888888888888999999998 6799999999999999999988777777888899999999885 44666666554
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.77 E-value=1.5e-18 Score=172.09 Aligned_cols=197 Identities=17% Similarity=0.264 Sum_probs=142.8
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcc------
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK------ 198 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~------ 198 (330)
.+++|++++++.+...+..... .....+.|..++||+||||||||++|++++..+ +.+++.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~---g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-~~~~~~i~~s~~~~~~~~~~l 533 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHTVSRL 533 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHT---TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-TCEEEEEEGGGCSSSSCCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-cCCEEEEechhhcchhhHhhh
Confidence 3588999999988887743211 111223455579999999999999999999999 789999999887543
Q ss_pred ------ccChhHHHHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCCC--------CCCcEEEEecCCCCC-
Q psy3808 199 ------WLGESEKLVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVGN--------DMDGILVLGATNIPW- 260 (330)
Q Consensus 199 ------~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~~- 260 (330)
|+|..+ ...+....+..+++|||||| ++. ...+.|+..++...- +..+++||+|||.+.
T Consensus 534 ~g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDE-i~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~ 610 (758)
T 1r6b_X 534 IGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDE-IEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_dssp CCCCSCSHHHHH--TTHHHHHHHHCSSEEEEEET-GGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC
T ss_pred cCCCCCCcCccc--cchHHHHHHhCCCcEEEEeC-ccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchh
Confidence 222211 12344555566789999999 654 455667777764211 124688999999854
Q ss_pred ------------------------CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCC---------CCCCChHhHHHH
Q psy3808 261 ------------------------VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNT---------RNTISDENLKEL 307 (330)
Q Consensus 261 ------------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~---------~~~~~~~~~~~l 307 (330)
.++|+|++||+..+.|++|+.+++..|++.++... ...+++..+..|
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l 690 (758)
T 1r6b_X 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWL 690 (758)
T ss_dssp -----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHH
T ss_pred hhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHH
Confidence 57899999999999999999999999999887632 234688889999
Q ss_pred HHHc--CCCCHHHHHHHHhhccc
Q psy3808 308 AKRT--EGYSGADISTLERNFKV 328 (330)
Q Consensus 308 a~~~--~g~~~~di~~l~~~a~~ 328 (330)
+... .++..+.+.++++.++.
T Consensus 691 ~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 691 AEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHhCCCcCCCchHHHHHHHHHHH
Confidence 9765 34557788888877654
No 57
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=3e-18 Score=156.94 Aligned_cols=183 Identities=25% Similarity=0.365 Sum_probs=133.5
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCC--CCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhc-cccCh
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKR--VPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS-KWLGE 202 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~~~ 202 (330)
+|+|++++++.+..++..++.+...+.... .+++++||+||||||||++|+++|..+ +.+|+.++++.+.+ .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l-~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEGGGGC----CCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc-CCCceeecchhhcccceeec
Confidence 589999999999998877655555444332 355799999999999999999999999 78999999988877 58885
Q ss_pred -hHHHHHHHHHHHH------------------------------------------------------------------
Q psy3808 203 -SEKLVKTLFELAR------------------------------------------------------------------ 215 (330)
Q Consensus 203 -~~~~~~~~f~~a~------------------------------------------------------------------ 215 (330)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 5666655554331
Q ss_pred -------------------------------------------------------------------------hcCCeEE
Q psy3808 216 -------------------------------------------------------------------------AHRPSII 222 (330)
Q Consensus 216 -------------------------------------------------------------------------~~~~~ii 222 (330)
....+|+
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0022489
Q ss_pred EEeCCcchh---------------hHHHHHHHHhcCC-------CCCCcEEEEecC----CCCCCcCHHHHhccccEEEe
Q psy3808 223 FIDERIDRG---------------ISNALFLLLSGVG-------NDMDGILVLGAT----NIPWVLDAAIRRRFEKRIYI 276 (330)
Q Consensus 223 ~iDe~~~~~---------------~~~~l~~~l~~~~-------~~~~~v~vi~tt----n~~~~l~~~l~~Rf~~~i~~ 276 (330)
++|| +|+. ++.+|+..+++-. -+.+++++|+|+ +.|.++.|.|+.||+.++.+
T Consensus 255 ~~DE-idki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l 333 (444)
T 1g41_A 255 FIDE-IDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 333 (444)
T ss_dssp EEET-GGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEEC
T ss_pred eHHH-HHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeC
Confidence 9999 5422 4458888888632 134678999886 35556779999999999999
Q ss_pred cCCCHHHHHHHHH-----------HHh--cCCCCCCChHhHHHHHHH
Q psy3808 277 ALPELNARLFMFR-----------HHL--GNTRNTISDENLKELAKR 310 (330)
Q Consensus 277 ~~p~~~~r~~il~-----------~~l--~~~~~~~~~~~~~~la~~ 310 (330)
+.++.++..+|+. ..+ ......+++..+..|++.
T Consensus 334 ~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~ 380 (444)
T 1g41_A 334 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEA 380 (444)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHH
Confidence 9999999999983 122 233345688888888874
No 58
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=3.7e-18 Score=154.29 Aligned_cols=189 Identities=19% Similarity=0.205 Sum_probs=131.4
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC---------
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS--------- 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~--------- 185 (330)
+..++.+.+|++++|++.+++.+..++. . .+..++ ++|+||||||||++++++++.+.+.
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~---------~-~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSD---------Q-PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTT---------C-TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHh---------h-CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 5567889999999999999998887551 1 122223 9999999999999999999965111
Q ss_pred -------------------cEEEecccchhccccChhHHHHHHHHHHHH--------------hcCCeEEEEeC--Ccch
Q psy3808 186 -------------------TFFSVSSSDLVSKWLGESEKLVKTLFELAR--------------AHRPSIIFIDE--RIDR 230 (330)
Q Consensus 186 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~--------------~~~~~ii~iDe--~~~~ 230 (330)
.++.++..... ......++....... ...|.||+||| .++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~ 148 (354)
T 1sxj_E 73 RQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK 148 (354)
T ss_dssp -------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH
T ss_pred eeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH
Confidence 11222221110 000112333333221 23577999999 3344
Q ss_pred hhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCC-hHhHHHHHH
Q psy3808 231 GISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTIS-DENLKELAK 309 (330)
Q Consensus 231 ~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~-~~~~~~la~ 309 (330)
...+.+...+... ..++.+|.+|+.+..+.+++.+|+ ..+.|++|+.++...+++..+...+..++ +..+..+++
T Consensus 149 ~~~~~L~~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~ 224 (354)
T 1sxj_E 149 DAQAALRRTMEKY---SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQ 224 (354)
T ss_dssp HHHHHHHHHHHHS---TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHH
T ss_pred HHHHHHHHHHHhh---cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 4556666666653 245777778888889999999999 77999999999999999999887777778 888999999
Q ss_pred HcCCCCHHHHHHH
Q psy3808 310 RTEGYSGADISTL 322 (330)
Q Consensus 310 ~~~g~~~~di~~l 322 (330)
.++|..+..+..+
T Consensus 225 ~~~G~~r~a~~~l 237 (354)
T 1sxj_E 225 ASNGNLRVSLLML 237 (354)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 9988666544433
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=3.2e-18 Score=169.60 Aligned_cols=195 Identities=21% Similarity=0.242 Sum_probs=146.3
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcE
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTF 187 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~ 187 (330)
....+.+|++++|.++..+.+...+.. ...++++|+||||||||++|++++..+ .+..+
T Consensus 178 ~~~~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 178 QLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHHhcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 344567899999999999988887631 234689999999999999999999987 24567
Q ss_pred EEecccchh--ccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh--------hHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 188 FSVSSSDLV--SKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG--------ISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 188 ~~~~~~~~~--~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~--------~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
+.+++..+. ..+.|..+..++.++..+....++|||||| ++.. ........+..+... ..+.+|++||
T Consensus 246 ~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDE-i~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~ 323 (758)
T 1r6b_X 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE-IHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTT 323 (758)
T ss_dssp EECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETT-TTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEEC
T ss_pred EEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEec-hHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeC
Confidence 777777765 467788888999999988887889999999 6643 133444555555443 5678888887
Q ss_pred CC-----CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC----CCCCCChHhHHHHHHHcCCC-----CHHHHHHHH
Q psy3808 258 IP-----WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN----TRNTISDENLKELAKRTEGY-----SGADISTLE 323 (330)
Q Consensus 258 ~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~~~g~-----~~~di~~l~ 323 (330)
.+ ..+++++.+||+ .+.|+.|+.+++..|++.++.. .+..+++..+..++..+.|| .+..+..++
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ll 402 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHH
Confidence 64 357899999997 6999999999999999887654 45567888888888877664 445666666
Q ss_pred hhc
Q psy3808 324 RNF 326 (330)
Q Consensus 324 ~~a 326 (330)
.+|
T Consensus 403 d~a 405 (758)
T 1r6b_X 403 DEA 405 (758)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.76 E-value=1.2e-17 Score=142.31 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=129.6
Q ss_pred CCCCcccccch---HHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccc
Q psy3808 120 PNVKWTDVAGL---EAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSD 194 (330)
Q Consensus 120 ~~~~~~~~~G~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~ 194 (330)
|..+|++++|. ..+.+.+...+..+ +.++++|+||||||||++|++++..+ .+.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASGD------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHTC------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 34789999973 46677777665321 23689999999999999999999987 246778888877
Q ss_pred hhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhh-----HHHHHHHHhcCCCCCCcE-EEEecCCCCC---CcCHH
Q psy3808 195 LVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGI-----SNALFLLLSGVGNDMDGI-LVLGATNIPW---VLDAA 265 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~-----~~~l~~~l~~~~~~~~~v-~vi~ttn~~~---~l~~~ 265 (330)
+........ . ....+.+|+||| ++... ...+...+...... ..+ +|++++..+. .+++.
T Consensus 91 ~~~~~~~~~--------~--~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 91 HASISTALL--------E--GLEQFDLICIDD-VDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp GGGSCGGGG--------T--TGGGSSEEEEET-GGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESSCTTTTTCCCHH
T ss_pred HHHHHHHHH--------H--hccCCCEEEEec-cccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCCCHHHHHHhhhh
Confidence 655432111 1 114568999999 65432 45566665543332 223 5554554443 45689
Q ss_pred HHhccc--cEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcc
Q psy3808 266 IRRRFE--KRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFK 327 (330)
Q Consensus 266 l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~ 327 (330)
+.+||. ..+.+++|+.+++..+++.++...+..+++..+..+++.+.| +.+.+.++++.+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 221 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLD 221 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 999986 789999999999999999999877777899999999999977 5667777766554
No 61
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.76 E-value=5.9e-18 Score=154.27 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=132.9
Q ss_pred cccchHHHHHHHHHHhhcccCCccc------------------ccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcE
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQL------------------FTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF 187 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~ 187 (330)
.|+|++.+++.|...+..+...... ......+..++||+||||||||++|+++|+.+ +.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l-~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL-DIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-TCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-CCCE
Confidence 4899999999998877422211110 01122345689999999999999999999999 7899
Q ss_pred EEecccchh-ccccChh-HHHHHHHHHHH----HhcCCeEEEEeCCcchh-----------------hHHHHHHHHhcCC
Q psy3808 188 FSVSSSDLV-SKWLGES-EKLVKTLFELA----RAHRPSIIFIDERIDRG-----------------ISNALFLLLSGVG 244 (330)
Q Consensus 188 ~~~~~~~~~-~~~~~~~-~~~~~~~f~~a----~~~~~~ii~iDe~~~~~-----------------~~~~l~~~l~~~~ 244 (330)
+.+++..+. ..+.|.. ...+..++... ....++|||||| ++.. ..+.|+..+++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE-i~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~ 179 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDE-IDKISRLSENRSITRDVSGEGVQQALLKIVEGSL 179 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEET-GGGC--------------CHHHHHHHHHHHHCCE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcC-HHHHhhhcCCCceecccchHHHHHHHHHHhhccc
Confidence 999988765 3444543 33444554432 223678999999 6543 5667778877531
Q ss_pred C------------------CCCcEEEEecCCC-----------------------------------------CCCcCHH
Q psy3808 245 N------------------DMDGILVLGATNI-----------------------------------------PWVLDAA 265 (330)
Q Consensus 245 ~------------------~~~~v~vi~ttn~-----------------------------------------~~~l~~~ 265 (330)
. ...++++|+++|. ...+.|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~ 259 (376)
T 1um8_A 180 VNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPE 259 (376)
T ss_dssp EC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHH
T ss_pred eecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChH
Confidence 0 0134567766652 1136789
Q ss_pred HHhccccEEEecCCCHHHHHHHHHH----H-------h--cCCCCCCChHhHHHHHHHcC--CCCHHHHHHHHhhccc
Q psy3808 266 IRRRFEKRIYIALPELNARLFMFRH----H-------L--GNTRNTISDENLKELAKRTE--GYSGADISTLERNFKV 328 (330)
Q Consensus 266 l~~Rf~~~i~~~~p~~~~r~~il~~----~-------l--~~~~~~~~~~~~~~la~~~~--g~~~~di~~l~~~a~~ 328 (330)
|.+||+.++.|++++.++...|+.. + + ......+++..+..|++... ....+.|.+++..++.
T Consensus 260 l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 260 LIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred HhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 9999999999999999999998862 1 1 12234568888999988754 3456777777766553
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.75 E-value=7.5e-18 Score=168.65 Aligned_cols=194 Identities=21% Similarity=0.297 Sum_probs=137.3
Q ss_pred ccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCC
Q psy3808 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNS 185 (330)
Q Consensus 115 ~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~ 185 (330)
+.....+.+|++++|.++..+.+...+.. ...++++|+||||||||++|+++|..+ .+.
T Consensus 160 l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 227 (854)
T 1qvr_A 160 LTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK 227 (854)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTC
T ss_pred HHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCC
Confidence 33445678999999999998888886632 123579999999999999999999987 257
Q ss_pred cEEEecccchh--ccccChhHHHHHHHHHHHHhc-CCeEEEEeCCcchhh-----------HHHHHHHHhcCCCCCCcEE
Q psy3808 186 TFFSVSSSDLV--SKWLGESEKLVKTLFELARAH-RPSIIFIDERIDRGI-----------SNALFLLLSGVGNDMDGIL 251 (330)
Q Consensus 186 ~~~~~~~~~~~--~~~~~~~~~~~~~~f~~a~~~-~~~ii~iDe~~~~~~-----------~~~l~~~l~~~~~~~~~v~ 251 (330)
+++.++++.+. ..+.|+.+..+..++..+... .|+|||||| ++... .+.+...+.. ..+.
T Consensus 228 ~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDE-i~~l~~~~~~~g~~~~~~~L~~~l~~-----~~i~ 301 (854)
T 1qvr_A 228 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE-LHTVVGAGKAEGAVDAGNMLKPALAR-----GELR 301 (854)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECC-C-------------------HHHHHT-----TCCC
T ss_pred eEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHhccCCccchHHHHHHHHHHHhC-----CCeE
Confidence 88999998876 467788888899999888765 689999999 66432 2234444432 4577
Q ss_pred EEecCCCCC----CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC----CCCCCChHhHHHHHHHcCC-----CCHHH
Q psy3808 252 VLGATNIPW----VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN----TRNTISDENLKELAKRTEG-----YSGAD 318 (330)
Q Consensus 252 vi~ttn~~~----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~~~g-----~~~~d 318 (330)
+|++||.++ .+++++.+||+. +.+++|+.+++..|++.++.. ++..+++..+..+++.+.| |.+..
T Consensus 302 ~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHH
T ss_pred EEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHH
Confidence 888888764 478999999976 999999999999999876653 3556788888888887654 45556
Q ss_pred HHHHHhhcc
Q psy3808 319 ISTLERNFK 327 (330)
Q Consensus 319 i~~l~~~a~ 327 (330)
...++.+|.
T Consensus 381 ai~lldea~ 389 (854)
T 1qvr_A 381 AIDLIDEAA 389 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
No 63
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=1.2e-17 Score=150.28 Aligned_cols=186 Identities=20% Similarity=0.205 Sum_probs=134.6
Q ss_pred cccccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC----cEEE
Q psy3808 114 AIVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS----TFFS 189 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~----~~~~ 189 (330)
.+..++.+.+|++++|++.+++.|...+.. +..| +++|+||||||||++|+++++.+.+. .+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~----------g~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDE----------GKLP--HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHT----------TCCC--CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhc----------CCCc--eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 345677889999999999999999887731 2223 49999999999999999999987322 3555
Q ss_pred ecccchhccccChhHHHHHHHHHHHH-h-----cCCeEEEEeCCcchh---hHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 190 VSSSDLVSKWLGESEKLVKTLFELAR-A-----HRPSIIFIDERIDRG---ISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~f~~a~-~-----~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
++.++.. + ...++....... . ..+.|++||| ++.. ..+.+...++. ....+.+|.+||.+.
T Consensus 82 ~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe-~~~l~~~~~~~L~~~le~---~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 82 LNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDE-ADAMTNAAQNALRRVIER---YTKNTRFCVLANYAH 151 (340)
T ss_dssp ECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETT-GGGSCHHHHHHHHHHHHH---TTTTEEEEEEESCGG
T ss_pred EcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeC-CCCCCHHHHHHHHHHHhc---CCCCeEEEEEecCcc
Confidence 6654421 1 122222222211 1 2367999999 6644 34455555554 335677777889999
Q ss_pred CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 261 VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
.+.+++.+|+. .+.|++++.++...++...+...+..+++..+..++..+.|....-+..+
T Consensus 152 ~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 152 KLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVL 212 (340)
T ss_dssp GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHT
T ss_pred ccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999995 68999999999999999888777777889899999999988666544443
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.74 E-value=4.7e-17 Score=148.46 Aligned_cols=197 Identities=16% Similarity=0.100 Sum_probs=136.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--------CCcEEEecc
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSVSS 192 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--------~~~~~~~~~ 192 (330)
...+++++|.+...+.+...+...+. +..+++++|+||||||||++++++++.+. +.+++.+++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34558899999999999887743221 12346899999999999999999999871 467788887
Q ss_pred cchhcc----------------ccCh-hHHHHHHHHHHHHh-cCCeEEEEeCCcchhh-----HHHHHHHHhcCCCC--C
Q psy3808 193 SDLVSK----------------WLGE-SEKLVKTLFELARA-HRPSIIFIDERIDRGI-----SNALFLLLSGVGND--M 247 (330)
Q Consensus 193 ~~~~~~----------------~~~~-~~~~~~~~f~~a~~-~~~~ii~iDe~~~~~~-----~~~l~~~l~~~~~~--~ 247 (330)
....+. ..+. .......++..... ..|++|+||| ++... ...+..++...... .
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE-i~~l~~~~~~~~~l~~l~~~~~~~~~~ 165 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDE-IDFLPKRPGGQDLLYRITRINQELGDR 165 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEET-TTHHHHSTTHHHHHHHHHHGGGCC---
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcc-HhhhcccCCCChHHHhHhhchhhcCCC
Confidence 643211 1111 22334455544433 3478999999 77543 34555555544321 3
Q ss_pred CcEEEEecCCCC---CCcCHHHHhcccc-EEEecCCCHHHHHHHHHHHhcC--CCCCCChHhHHHHHHHcC---CCCHHH
Q psy3808 248 DGILVLGATNIP---WVLDAAIRRRFEK-RIYIALPELNARLFMFRHHLGN--TRNTISDENLKELAKRTE---GYSGAD 318 (330)
Q Consensus 248 ~~v~vi~ttn~~---~~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~~~---g~~~~d 318 (330)
.++.+|++||.+ ..+++.+.+||.. .+.|++|+.+++..+++..+.. .+..+++..+..+++.+. |... .
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r-~ 244 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR-R 244 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH-H
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH-H
Confidence 567888888877 6789999999976 7999999999999999988764 344567778888998887 7544 4
Q ss_pred HHHHHhhcc
Q psy3808 319 ISTLERNFK 327 (330)
Q Consensus 319 i~~l~~~a~ 327 (330)
+.++++.|.
T Consensus 245 ~~~~l~~a~ 253 (387)
T 2v1u_A 245 ALDLLRVAG 253 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556665553
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.73 E-value=9.8e-17 Score=143.75 Aligned_cols=193 Identities=23% Similarity=0.300 Sum_probs=135.5
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 116 VMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 116 ~~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.....+.+|++++|.+.+++.+...+..... .+.++.+++|+||||||||||++++|+.+ +.++...+...+
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l-~~~~~~~sg~~~ 87 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASEL-QTNIHVTSGPVL 87 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHH-TCCEEEEETTTC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEechHh
Confidence 3445667899999999998888776632110 12234689999999999999999999999 566655544322
Q ss_pred hccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchh---hHHHHHHHHhcCCC---------------CCCcEEEEecCC
Q psy3808 196 VSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRG---ISNALFLLLSGVGN---------------DMDGILVLGATN 257 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~---~~~~l~~~l~~~~~---------------~~~~v~vi~ttn 257 (330)
.. ...+..++.. ...+.|+|||| ++.. ..+.+...+..... ....+.++++|+
T Consensus 88 ~~------~~~l~~~~~~--~~~~~v~~iDE-~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 88 VK------QGDMAAILTS--LERGDVLFIDE-IHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp CS------HHHHHHHHHH--CCTTCEEEEET-GGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred cC------HHHHHHHHHH--ccCCCEEEEcc-hhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 11 1122222221 23467999999 6543 33444444432210 012467788899
Q ss_pred CCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhc
Q psy3808 258 IPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNF 326 (330)
Q Consensus 258 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a 326 (330)
.+..+++++++||...+.+++|+.+++..+++..+...+..+++..+..+|+.+.|.. +.+.++++.+
T Consensus 159 ~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~ 226 (334)
T 1in4_A 159 RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRV 226 (334)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHH
T ss_pred CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHH
Confidence 9999999999999888999999999999999998877777788889999999999865 4666666543
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.73 E-value=1.9e-17 Score=165.77 Aligned_cols=201 Identities=18% Similarity=0.241 Sum_probs=142.2
Q ss_pred cccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcc---
Q psy3808 124 WTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSK--- 198 (330)
Q Consensus 124 ~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~--- 198 (330)
+.+|+|++.+++.+...+..... .....+.|..++||+||||||||++|++++..+ .+.+|+.++++.+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~---g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGG---GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46799999999999888743211 011223454689999999999999999999988 2468999999876543
Q ss_pred --ccChhHHH-----HHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC--------CCCcEEEEecCCCC-
Q psy3808 199 --WLGESEKL-----VKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVGN--------DMDGILVLGATNIP- 259 (330)
Q Consensus 199 --~~~~~~~~-----~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~- 259 (330)
..|..... ...+....+..+++|||||| ++ ....+.|+..++...- +..+++||+|||.+
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDE-i~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~ 712 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDE-IEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGS 712 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESS-GGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTH
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEec-ccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcCh
Confidence 12111111 12344455556679999999 55 4455666666664311 12468899999972
Q ss_pred -------------------------CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC---------CCCCCChHhHH
Q psy3808 260 -------------------------WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN---------TRNTISDENLK 305 (330)
Q Consensus 260 -------------------------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~---------~~~~~~~~~~~ 305 (330)
..+.|+|.+||+..+.|++|+.+++..|++.++.. ....+++..+.
T Consensus 713 ~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~ 792 (854)
T 1qvr_A 713 PLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKD 792 (854)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHH
T ss_pred HHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHH
Confidence 24678899999999999999999999999887752 22357888999
Q ss_pred HHHHHcC--CCCHHHHHHHHhhccc
Q psy3808 306 ELAKRTE--GYSGADISTLERNFKV 328 (330)
Q Consensus 306 ~la~~~~--g~~~~di~~l~~~a~~ 328 (330)
.|+.... .+..++|.+++++++.
T Consensus 793 ~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 793 FLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHcCCCCCCChHHHHHHHHHHHH
Confidence 9999876 6778899999988764
No 67
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=1.7e-17 Score=148.69 Aligned_cols=152 Identities=22% Similarity=0.219 Sum_probs=105.0
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc------ch
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS------DL 195 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~------~~ 195 (330)
..+++++|.+++++.+...+.. .+++||+||||||||++|+++++.+ +.+++.+++. ++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~-~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTM-DLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHh-CCCeEEEecCCCCChhhc
Confidence 3456899999999988877632 2489999999999999999999999 6788777763 12
Q ss_pred hccccChhHHHHHHHHHHHHhcC---CeEEEEeCCcch---hhHHHHHHHHhcCC--------CCCCcEEEEecCCCCC-
Q psy3808 196 VSKWLGESEKLVKTLFELARAHR---PSIIFIDERIDR---GISNALFLLLSGVG--------NDMDGILVLGATNIPW- 260 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~f~~a~~~~---~~ii~iDe~~~~---~~~~~l~~~l~~~~--------~~~~~v~vi~ttn~~~- 260 (330)
.+....... ...| ..... .+|+|||| ++. ...+.++..++... ....++++|+|+|+..
T Consensus 89 ~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDE-i~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 89 IGTMIYNQH---KGNF--EVKKGPVFSNFILADE-VNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp HEEEEEETT---TTEE--EEEECTTCSSEEEEET-GGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred CCceeecCC---CCce--EeccCcccccEEEEEc-cccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 211110000 0000 00112 26999999 654 44455555555321 1124578888888543
Q ss_pred ----CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC
Q psy3808 261 ----VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN 294 (330)
Q Consensus 261 ----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~ 294 (330)
.+++++++||...+.+++|+.+++..|++..+..
T Consensus 163 ~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 163 EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 3899999999888999999999999999988765
No 68
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.72 E-value=5.8e-17 Score=146.14 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=120.2
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC------CcE----
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN------STF---- 187 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~------~~~---- 187 (330)
..++.+|++++|.+.+++.+......+ ...++||+||||||||++|++++..++. .++
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 346788999999999887765444221 1246999999999999999999998832 121
Q ss_pred ----------------------EEecccchhccccChhHHHHHHHHHHH---------HhcCCeEEEEeCCcch---hhH
Q psy3808 188 ----------------------FSVSSSDLVSKWLGESEKLVKTLFELA---------RAHRPSIIFIDERIDR---GIS 233 (330)
Q Consensus 188 ----------------------~~~~~~~~~~~~~~~~~~~~~~~f~~a---------~~~~~~ii~iDe~~~~---~~~ 233 (330)
+.+..........|.. .+...+... ....+++||||| ++. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDE-i~~l~~~~~ 161 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDE-CNLLEDHIV 161 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETT-GGGSCHHHH
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeC-hhhCCHHHH
Confidence 1111100000011110 001111111 112368999999 664 344
Q ss_pred HHHHHHHhcC----CCC------CCcEEEEecCCCCC-CcCHHHHhccccEEEecCC-CHHHHHHHHHHHh---------
Q psy3808 234 NALFLLLSGV----GND------MDGILVLGATNIPW-VLDAAIRRRFEKRIYIALP-ELNARLFMFRHHL--------- 292 (330)
Q Consensus 234 ~~l~~~l~~~----~~~------~~~v~vi~ttn~~~-~l~~~l~~Rf~~~i~~~~p-~~~~r~~il~~~l--------- 292 (330)
+.++..++.. ... ..++++|+|||+.. .+++++++||+..+.+++| +.+.+..|++..+
T Consensus 162 ~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~ 241 (350)
T 1g8p_A 162 DLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAF 241 (350)
T ss_dssp HHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhh
Confidence 5555555531 110 12688999999744 8999999999888999998 6777777776521
Q ss_pred --------------------cCCCCCCChHhHHHHHHHcCCC---CHHHHHHHHhhcc
Q psy3808 293 --------------------GNTRNTISDENLKELAKRTEGY---SGADISTLERNFK 327 (330)
Q Consensus 293 --------------------~~~~~~~~~~~~~~la~~~~g~---~~~di~~l~~~a~ 327 (330)
...+..+++..+..|++.+.+. +.+.+.++++.|.
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~ 299 (350)
T 1g8p_A 242 LEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSAR 299 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 1123357888888888776542 4577778776553
No 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.4e-17 Score=142.45 Aligned_cols=190 Identities=10% Similarity=0.037 Sum_probs=130.2
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC---------CCcEEEecccchhc
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN---------NSTFFSVSSSDLVS 197 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~---------~~~~~~~~~~~~~~ 197 (330)
+.|.++..+.+...+...+. +..+.+++|+||||||||++++.++.++. ...++.++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 67777777777766643321 12346899999999999999999999982 23567888765432
Q ss_pred c----------c------cChhHHHHHHHHHHH--HhcCCeEEEEeCCcchh-hHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 198 K----------W------LGESEKLVKTLFELA--RAHRPSIIFIDERIDRG-ISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 198 ~----------~------~~~~~~~~~~~f~~a--~~~~~~ii~iDe~~~~~-~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
. . .+.....+..+|... ....+.||++|| +|.. .++.+..++........+++||+.+|.
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE-~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQN-PENLLSEKILQYFEKWISSKNSKLSIICVGGH 172 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEEC-CSSSCCTHHHHHHHHHHHCSSCCEEEEEECCS
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEec-HHHhhcchHHHHHHhcccccCCcEEEEEEecC
Confidence 1 1 123455667777764 345678999999 6654 344555555433334457899999888
Q ss_pred CCC----cCHHHHhccc-cEEEecCCCHHHHHHHHHHHhcCCCC-----------------------------------C
Q psy3808 259 PWV----LDAAIRRRFE-KRIYIALPELNARLFMFRHHLGNTRN-----------------------------------T 298 (330)
Q Consensus 259 ~~~----l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~~~~-----------------------------------~ 298 (330)
.+. +++++.+||. ..+.|++++.++...|++..+..... .
T Consensus 173 ~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (318)
T 3te6_A 173 NVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHK 252 (318)
T ss_dssp SCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEE
T ss_pred cccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 754 4556678997 57999999999999999887765321 2
Q ss_pred CChHhHHHHHH---HcCCCCHHHHHHHHhhc
Q psy3808 299 ISDENLKELAK---RTEGYSGADISTLERNF 326 (330)
Q Consensus 299 ~~~~~~~~la~---~~~g~~~~di~~l~~~a 326 (330)
+++..+..+|+ ...|.....|. +|+.|
T Consensus 253 i~~~ai~~~A~~vA~~~GD~R~Al~-ilr~A 282 (318)
T 3te6_A 253 INNKITQLIAKNVANVSGSTEKAFK-ICEAA 282 (318)
T ss_dssp CCHHHHHHHHHHHHHHHCSHHHHHH-HHHHH
T ss_pred cCHHHHHHHHHHHHhhCChHHHHHH-HHHHH
Confidence 47778888888 45677666664 35444
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.71 E-value=2e-17 Score=135.14 Aligned_cols=144 Identities=24% Similarity=0.377 Sum_probs=105.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---------CCCcEE
Q psy3808 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---------NNSTFF 188 (330)
Q Consensus 118 ~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---------~~~~~~ 188 (330)
...+..|++++|.+...+.+.+.+.. ....+++|+||||||||++|++++..+ .+.+++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 34456899999999998888887622 123589999999999999999999987 256788
Q ss_pred Eecccchhc--cccChhHHHHHHHHHHHHhc-CCeEEEEeCCcchh------------hHHHHHHHHhcCCCCCCcEEEE
Q psy3808 189 SVSSSDLVS--KWLGESEKLVKTLFELARAH-RPSIIFIDERIDRG------------ISNALFLLLSGVGNDMDGILVL 253 (330)
Q Consensus 189 ~~~~~~~~~--~~~~~~~~~~~~~f~~a~~~-~~~ii~iDe~~~~~------------~~~~l~~~l~~~~~~~~~v~vi 253 (330)
.+++..+.. .+.+.....+..++...... .|.+|+||| ++.. ..+.+...+.. .++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe-~~~l~~~~~~~~~~~~~~~~l~~~~~~-----~~~~ii 156 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDE-IHTVVGAGAVAEGALDAGNILKPMLAR-----GELRCI 156 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETT-GGGGSSSSSSCTTSCCTHHHHHHHHHT-----TCSCEE
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeC-HHHhcccccccccchHHHHHHHHHHhc-----CCeeEE
Confidence 888776652 24444555667777666554 678999999 5433 23344444432 457788
Q ss_pred ecCCCCC-----CcCHHHHhccccEEEecCCC
Q psy3808 254 GATNIPW-----VLDAAIRRRFEKRIYIALPE 280 (330)
Q Consensus 254 ~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~ 280 (330)
+++|.+. .+++++.+||. .+.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 8888764 68999999997 48999886
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=3.5e-16 Score=142.72 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=131.1
Q ss_pred cccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC----------CCcEEEeccc
Q psy3808 124 WTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN----------NSTFFSVSSS 193 (330)
Q Consensus 124 ~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~----------~~~~~~~~~~ 193 (330)
.++++|.++..+.+...+..... +..+++++|+||||||||++|+++++.+. +.+++.+++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 37899999999999887743321 12336899999999999999999999861 5678888876
Q ss_pred chh-cc-----------------ccCh-hHHHHHHHHHHHHhcCCeEEEEeCCcchhh----HHH-HHHHHhcCCCCCCc
Q psy3808 194 DLV-SK-----------------WLGE-SEKLVKTLFELARAHRPSIIFIDERIDRGI----SNA-LFLLLSGVGNDMDG 249 (330)
Q Consensus 194 ~~~-~~-----------------~~~~-~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~----~~~-l~~~l~~~~~~~~~ 249 (330)
... +. ..+. ....+..++.......+ ||+||| ++... .+. +..++... .+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDE-i~~l~~~~~~~~~l~~l~~~~----~~ 164 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDE-VDTLVKRRGGDIVLYQLLRSD----AN 164 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEET-THHHHHSTTSHHHHHHHHTSS----SC
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEEC-HHHhccCCCCceeHHHHhcCC----cc
Confidence 543 10 0111 12334445544444444 999999 76543 333 44444433 56
Q ss_pred EEEEecCCCC---CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcC--CCCCCChHhHHHHHHHcC---CCCHHHHHH
Q psy3808 250 ILVLGATNIP---WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGN--TRNTISDENLKELAKRTE---GYSGADIST 321 (330)
Q Consensus 250 v~vi~ttn~~---~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~~~---g~~~~di~~ 321 (330)
+.+|++||.+ ..+++.+.+||...+.|++|+.++...+++..+.. .+..+++..+..+++.+. |... .+.+
T Consensus 165 ~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r-~a~~ 243 (384)
T 2qby_B 165 ISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDAR-KAVN 243 (384)
T ss_dssp EEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHH-HHHH
T ss_pred eEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHH-HHHH
Confidence 8888888876 67899999999889999999999999999988763 234567778889999887 5433 3445
Q ss_pred HHhhc
Q psy3808 322 LERNF 326 (330)
Q Consensus 322 l~~~a 326 (330)
+++.|
T Consensus 244 ~l~~a 248 (384)
T 2qby_B 244 LLFRA 248 (384)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=2.9e-15 Score=136.74 Aligned_cols=199 Identities=14% Similarity=0.052 Sum_probs=130.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC---CCcEEEecccchhc
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN---NSTFFSVSSSDLVS 197 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~---~~~~~~~~~~~~~~ 197 (330)
...+++++|.+...+.+...+..... ......++++|+||||||||++++++++.+. +..++.+++....+
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 34458899999999999887743221 1111113799999999999999999999883 34677777654321
Q ss_pred c----------------ccCh-hHHHHHHHHHHHHh-cCCeEEEEeCCcchhh---HHHHHHHHhcCCCC-CCcEEEEec
Q psy3808 198 K----------------WLGE-SEKLVKTLFELARA-HRPSIIFIDERIDRGI---SNALFLLLSGVGND-MDGILVLGA 255 (330)
Q Consensus 198 ~----------------~~~~-~~~~~~~~f~~a~~-~~~~ii~iDe~~~~~~---~~~l~~~l~~~~~~-~~~v~vi~t 255 (330)
. ..+. .......+...... ..|.||+||| ++... ...+..++...... ..++.+|++
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE-~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDD-AFNLAPDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEET-GGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEC-ccccchHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 0 0011 12223333333322 4588999999 66543 33344444332210 136788888
Q ss_pred CCCC---CCcCHHHHhcccc-EEEecCCCHHHHHHHHHHHhcC--CCCCCChHhHHHHHHHc---------CCCCHHHHH
Q psy3808 256 TNIP---WVLDAAIRRRFEK-RIYIALPELNARLFMFRHHLGN--TRNTISDENLKELAKRT---------EGYSGADIS 320 (330)
Q Consensus 256 tn~~---~~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~~---------~g~~~~di~ 320 (330)
||.+ ..+++.+.+||.. .+.|++++.++...+++..+.. ....+++..+..+++.+ .|. ...+.
T Consensus 166 ~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~-~r~~~ 244 (389)
T 1fnn_A 166 GHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD-ARLAI 244 (389)
T ss_dssp ESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCC-HHHHH
T ss_pred ECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCc-HHHHH
Confidence 8877 5688899999876 7999999999999999887754 12356888999999999 453 34556
Q ss_pred HHHhhcc
Q psy3808 321 TLERNFK 327 (330)
Q Consensus 321 ~l~~~a~ 327 (330)
++++.|.
T Consensus 245 ~~l~~a~ 251 (389)
T 1fnn_A 245 DILYRSA 251 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.67 E-value=9.7e-16 Score=132.80 Aligned_cols=192 Identities=14% Similarity=0.103 Sum_probs=115.2
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchhccc
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLVSKW 199 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~~ 199 (330)
.+|++++|.+...+.+.+.+..... ...+++|+||||||||++|++++..+. +.+|+.++++.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4788999999888888776643221 125799999999999999999999873 3589999988763211
Q ss_pred -----cChhHHH-------HHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCC--------CCCCcEEEEecC
Q psy3808 200 -----LGESEKL-------VKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVG--------NDMDGILVLGAT 256 (330)
Q Consensus 200 -----~~~~~~~-------~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~--------~~~~~v~vi~tt 256 (330)
.|..... ....+.. ..+++||||| ++. ..+..++..++... ....++.+|+||
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDE-i~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~at 148 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDE-LATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCAT 148 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEES-GGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEE
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEec-hHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEec
Confidence 1110000 0011221 2357999999 654 44556666665421 011357788888
Q ss_pred CCC-------CCcCHHHHhcccc-EEEecCCCH--HHHHHHHHHHhc----CCCC----CCChHhHHHHHHHcCCCCHHH
Q psy3808 257 NIP-------WVLDAAIRRRFEK-RIYIALPEL--NARLFMFRHHLG----NTRN----TISDENLKELAKRTEGYSGAD 318 (330)
Q Consensus 257 n~~-------~~l~~~l~~Rf~~-~i~~~~p~~--~~r~~il~~~l~----~~~~----~~~~~~~~~la~~~~g~~~~d 318 (330)
|.+ ..+.+.+.+||.. .+.+|+... ++...+++.++. ..+. .+++..+..|.......+.++
T Consensus 149 n~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~re 228 (265)
T 2bjv_A 149 NADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRE 228 (265)
T ss_dssp SSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHH
T ss_pred CcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHH
Confidence 875 2467899999964 345555443 344445444432 2322 467778888877654445678
Q ss_pred HHHHHhhcc
Q psy3808 319 ISTLERNFK 327 (330)
Q Consensus 319 i~~l~~~a~ 327 (330)
|.++++.+.
T Consensus 229 L~~~l~~~~ 237 (265)
T 2bjv_A 229 LKNVVERSV 237 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=9.4e-16 Score=139.69 Aligned_cols=196 Identities=18% Similarity=0.195 Sum_probs=130.8
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC-----CCcEEEecccc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSVSSSD 194 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~-----~~~~~~~~~~~ 194 (330)
+...+++++|.++..+.+...+...+. +..+..++|+||||||||++++++++.+. +.+++.+++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 345568899999999999887643211 12336899999999999999999999872 46778887653
Q ss_pred hhc------c----------ccCh-hHHHHHHHHHHHHhc-CCeEEEEeCCcchh-------hHHHHHHHHhcCCCCCCc
Q psy3808 195 LVS------K----------WLGE-SEKLVKTLFELARAH-RPSIIFIDERIDRG-------ISNALFLLLSGVGNDMDG 249 (330)
Q Consensus 195 ~~~------~----------~~~~-~~~~~~~~f~~a~~~-~~~ii~iDe~~~~~-------~~~~l~~~l~~~~~~~~~ 249 (330)
... . ..+. .......++...... .|.||+||| ++.. ....+...++.. ...+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE-~~~l~~~~~~~~l~~l~~~~~~~--~~~~ 163 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDE-IDAFVKKYNDDILYKLSRINSEV--NKSK 163 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEET-HHHHHHSSCSTHHHHHHHHHHSC--CC--
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-hhhhhccCcCHHHHHHhhchhhc--CCCe
Confidence 211 0 0111 233344555544443 389999999 5543 233344444333 2346
Q ss_pred EEEEecCCCC---CCcCHHHHhcccc-EEEecCCCHHHHHHHHHHHhcCC--CCCCChHhHHHHHHHcC---CCCHHHHH
Q psy3808 250 ILVLGATNIP---WVLDAAIRRRFEK-RIYIALPELNARLFMFRHHLGNT--RNTISDENLKELAKRTE---GYSGADIS 320 (330)
Q Consensus 250 v~vi~ttn~~---~~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~~--~~~~~~~~~~~la~~~~---g~~~~di~ 320 (330)
+.+|++|+.+ ..+++.+.+||.. .+.+++++.++...+++..+... ...+++..+..+++.+. |... .+.
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r-~~~ 242 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDAR-RAL 242 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHH-HHH
T ss_pred EEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHH-HHH
Confidence 7888888766 4678889898864 79999999999999998876532 23567778888888887 7555 444
Q ss_pred HHHhhcc
Q psy3808 321 TLERNFK 327 (330)
Q Consensus 321 ~l~~~a~ 327 (330)
++|+.|.
T Consensus 243 ~ll~~a~ 249 (386)
T 2qby_A 243 DLLRVSG 249 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666553
No 75
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.65 E-value=2.8e-15 Score=134.23 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCC-----------------------c
Q psy3808 130 LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS-----------------------T 186 (330)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~-----------------------~ 186 (330)
+.++.+.+...+. .+..++.+||+||||+|||++|+++|+.+.+. .
T Consensus 7 ~~~~~~~l~~~i~-----------~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQ-----------AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHH-----------TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHH-----------cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4566666766652 22334679999999999999999999987321 1
Q ss_pred EEEecccchhccccChhHHHHHHHHHHHHh----cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCc
Q psy3808 187 FFSVSSSDLVSKWLGESEKLVKTLFELARA----HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVL 262 (330)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~----~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l 262 (330)
++.+++.+- +. ...-..++.+.+.+.. ..+.|++||| .|.........++..++.+..++++|.+|+.+..+
T Consensus 76 ~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIde-ad~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 76 YYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTD-AALLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (334)
T ss_dssp EEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESC-GGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred EEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECc-hhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 233332200 00 1123345666655543 3467999999 77666555555555556666778888899999999
Q ss_pred CHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHH
Q psy3808 263 DAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADI 319 (330)
Q Consensus 263 ~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di 319 (330)
.+++++|+ ..+.|++|+.++...+++..+ .+++..+..+++.++|..+..+
T Consensus 152 ~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~ 202 (334)
T 1a5t_A 152 LATLRSRC-RLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAAL 202 (334)
T ss_dssp CHHHHTTS-EEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHhhcc-eeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999 569999999999999888765 4577888999999988665443
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.65 E-value=5.6e-16 Score=144.87 Aligned_cols=185 Identities=18% Similarity=0.154 Sum_probs=112.7
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCC-CcEEEecc-----cchhccc
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANN-STFFSVSS-----SDLVSKW 199 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~-~~~~~~~~-----~~~~~~~ 199 (330)
.++|.+++++.+...+.. ..++||+||||||||++|++++..+.. .+|..+++ +++.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 488999999888776632 248999999999999999999998832 34444444 2333322
Q ss_pred cChhHHHHHHHHHHHHhc---CCeEEEEeCCcc---hhhHHHHHHHHhcCC-------CCCCcEEEEecCCCCC---CcC
Q psy3808 200 LGESEKLVKTLFELARAH---RPSIIFIDERID---RGISNALFLLLSGVG-------NDMDGILVLGATNIPW---VLD 263 (330)
Q Consensus 200 ~~~~~~~~~~~f~~a~~~---~~~ii~iDe~~~---~~~~~~l~~~l~~~~-------~~~~~v~vi~ttn~~~---~l~ 263 (330)
.+..... ...|..+... .++|||||| ++ ....+.++..++... ...+..++|+|||++. .+.
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDE-I~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~ 166 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDE-IWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSL 166 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEES-GGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTT
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHh-HhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccH
Confidence 2211111 1122211111 467999999 55 455566666665321 1111224466666532 245
Q ss_pred HHHHhccccEEEecCCCH-HHHHHHHHHHhcCC-----------------------CCCCChHhHHHHHHHc--------
Q psy3808 264 AAIRRRFEKRIYIALPEL-NARLFMFRHHLGNT-----------------------RNTISDENLKELAKRT-------- 311 (330)
Q Consensus 264 ~~l~~Rf~~~i~~~~p~~-~~r~~il~~~l~~~-----------------------~~~~~~~~~~~la~~~-------- 311 (330)
+++++||...+.+|+|+. +++..|++...... ...+++..+..++...
T Consensus 167 ~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~ 246 (500)
T 3nbx_X 167 EALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPD 246 (500)
T ss_dssp HHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCC
Confidence 699999988899999987 77888887654311 2334555566666544
Q ss_pred -CCCCHHHHHHHHhhc
Q psy3808 312 -EGYSGADISTLERNF 326 (330)
Q Consensus 312 -~g~~~~di~~l~~~a 326 (330)
.|.|.+.+..+++.|
T Consensus 247 ~~~iS~R~~~~llr~A 262 (500)
T 3nbx_X 247 APYVSDRRWKKAIRLL 262 (500)
T ss_dssp SCCCCHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHHH
Confidence 477887777776654
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.61 E-value=1.9e-15 Score=133.45 Aligned_cols=190 Identities=15% Similarity=0.161 Sum_probs=120.1
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchhccc---
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLVSKW--- 199 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~~--- 199 (330)
++++|.+...+.+.+.+.... ....++||+||||||||++|++++.... +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 358888888888777664321 1235799999999999999999999762 4688999887653211
Q ss_pred --cChh-------HHHHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCCC--------CCCcEEEEecCCCC
Q psy3808 200 --LGES-------EKLVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVGN--------DMDGILVLGATNIP 259 (330)
Q Consensus 200 --~~~~-------~~~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~~--------~~~~v~vi~ttn~~ 259 (330)
.|.. .......|..+ .+++||||| ++. ..+..++..++...- ...++.||+|||.+
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDE-i~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDE-IGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEES-CTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEec-cccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 1100 00011233333 347999999 654 455666666665321 11347888899876
Q ss_pred -------CCcCHHHHhcccc-EEEecCCC--HHHHHHHHHHHhcC----C---CCCCChHhHHHHHHHcCCCCHHHHHHH
Q psy3808 260 -------WVLDAAIRRRFEK-RIYIALPE--LNARLFMFRHHLGN----T---RNTISDENLKELAKRTEGYSGADISTL 322 (330)
Q Consensus 260 -------~~l~~~l~~Rf~~-~i~~~~p~--~~~r~~il~~~l~~----~---~~~~~~~~~~~la~~~~g~~~~di~~l 322 (330)
..+++.|.+||.. .+.+|+.. .++...+++.++.. . ...+++..+..|......-+.++|.++
T Consensus 148 l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~ 227 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENA 227 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHH
Confidence 2467788889853 24444444 33444556555432 1 235678888889887744466789998
Q ss_pred Hhhccc
Q psy3808 323 ERNFKV 328 (330)
Q Consensus 323 ~~~a~~ 328 (330)
++.|..
T Consensus 228 l~~~~~ 233 (304)
T 1ojl_A 228 IERAVV 233 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 78
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=99.56 E-value=1.4e-14 Score=100.68 Aligned_cols=69 Identities=26% Similarity=0.322 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYL 72 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l 72 (330)
.+++|++++++||++|+.|+|++|+.+|+++++.|...++.+ .+...++.++.++.+|++|+++|+..+
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e-~d~~~k~~ir~K~~eY~~RAE~LK~~l 83 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLY-RDGSTAAIYEQMINEYKRRIEVLKELI 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS-TTSSTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478999999999999999999999999999999999999988 567789999999999999999999753
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=3.8e-14 Score=124.80 Aligned_cols=143 Identities=11% Similarity=0.098 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh-----CCCcEEEecccchhccccChh
Q psy3808 129 GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSVSSSDLVSKWLGES 203 (330)
Q Consensus 129 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~-----~~~~~~~~~~~~~~~~~~~~~ 203 (330)
|++++.+.|...+.. +. ..++||+||||+|||++|+++++.+ ....++.++++. ... .
T Consensus 1 g~~~~~~~L~~~i~~----------~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~~--~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------SE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENI--G 63 (305)
T ss_dssp ---CHHHHHHHHHHT----------CS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCB--C
T ss_pred ChHHHHHHHHHHHHC----------CC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CCC--C
Confidence 567788888877732 22 2589999999999999999999864 134566666542 011 2
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCC
Q psy3808 204 EKLVKTLFELARAH----RPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALP 279 (330)
Q Consensus 204 ~~~~~~~f~~a~~~----~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p 279 (330)
-..++.+.+.+... ...|++||| .+.....+...++..++.+.+.+++|.+|+.+..+.|++++| .+.|++|
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIde-ad~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l 139 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHD-CERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVN 139 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETT-GGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECC
T ss_pred HHHHHHHHHHHhhccccCCceEEEecc-HHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCC
Confidence 33456666666533 246999999 776666555556666666667788888888899999999999 7999999
Q ss_pred CHHHHHHHHHHHh
Q psy3808 280 ELNARLFMFRHHL 292 (330)
Q Consensus 280 ~~~~r~~il~~~l 292 (330)
+.++....++..+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999988888776
No 80
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=99.54 E-value=1.5e-14 Score=100.93 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYL 72 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l 72 (330)
.+++|++++++||+.|+.|+|++|+.+|+++++.|...++.+ .++..++.++.++.+|++|+++|+..+
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e-~d~~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLY-PESVARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999999988 667789999999999999999999887
No 81
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=99.53 E-value=1.9e-13 Score=101.48 Aligned_cols=74 Identities=61% Similarity=0.956 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKGK 76 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~~ 76 (330)
.+++|++++++|+++|++|+|++|+.+|++++++|+..++.+..+.+.++.++.++.+|+.|+|.|+.++....
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~ 87 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 47899999999999999999999999999999999999988866678889999999999999999999997654
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=1e-14 Score=114.47 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=84.4
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccccChh
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWLGES 203 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~ 203 (330)
+++|.+...+.+.+.+.... ....+++|+||||||||++|++++... .+.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 57888888887777664321 122579999999999999999999876 246788 998876544
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCCCCCCcEEEEecCCCCC-------CcCHHHHhcccc-
Q psy3808 204 EKLVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVGNDMDGILVLGATNIPW-------VLDAAIRRRFEK- 272 (330)
Q Consensus 204 ~~~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~-------~l~~~l~~Rf~~- 272 (330)
......+..+ ..++||||| ++. ..+..++..+.. ...++.+|+|||.+. .+.+.+..|+..
T Consensus 66 -~~~~~~~~~a---~~g~l~lde-i~~l~~~~q~~Ll~~l~~---~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~ 137 (145)
T 3n70_A 66 -PQLNDFIALA---QGGTLVLSH-PEHLTREQQYHLVQLQSQ---EHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT 137 (145)
T ss_dssp -SCHHHHHHHH---TTSCEEEEC-GGGSCHHHHHHHHHHHHS---SSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHH
T ss_pred -hhhhcHHHHc---CCcEEEEcC-hHHCCHHHHHHHHHHHhh---cCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCC
Confidence 1223344444 347999999 654 444555665533 334567888888652 456777777643
Q ss_pred EEEecC
Q psy3808 273 RIYIAL 278 (330)
Q Consensus 273 ~i~~~~ 278 (330)
.|.+|+
T Consensus 138 ~i~lPp 143 (145)
T 3n70_A 138 QIACLP 143 (145)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 355554
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.52 E-value=1e-14 Score=114.31 Aligned_cols=128 Identities=13% Similarity=0.205 Sum_probs=85.1
Q ss_pred cccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHH
Q psy3808 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEK 205 (330)
Q Consensus 126 ~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (330)
+++|.+...+.+.+.+.... ....+++|+||||||||++|++++... + +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~-~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNG-T-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTT-S-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhC-C-CeEEechhhCChHh------
Confidence 57888888888877764321 122579999999999999999999987 4 89999998775433
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCCCCCCcEEEEecCCCC-CC----cCHHHHhcccc-EEEe
Q psy3808 206 LVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVGNDMDGILVLGATNIP-WV----LDAAIRRRFEK-RIYI 276 (330)
Q Consensus 206 ~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~~~~~~v~vi~ttn~~-~~----l~~~l~~Rf~~-~i~~ 276 (330)
...++..+ .+++||||| ++. ..+..++..++... ..++.+|+|||.+ .. +++.+..|+.. .|.+
T Consensus 67 -~~~~~~~a---~~~~l~lDe-i~~l~~~~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~l 139 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGD-IAQYSRNIQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRI 139 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEE-CTTCCHHHHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEE
T ss_pred -hhhHHHhC---CCCeEEEeC-hHHCCHHHHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeC
Confidence 34445443 357999999 654 44555666665532 2457788888754 22 45566667644 3566
Q ss_pred cC
Q psy3808 277 AL 278 (330)
Q Consensus 277 ~~ 278 (330)
|+
T Consensus 140 Pp 141 (143)
T 3co5_A 140 PP 141 (143)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 84
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.1e-14 Score=139.51 Aligned_cols=163 Identities=23% Similarity=0.206 Sum_probs=98.3
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCC-CCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEe----cccchhccc
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGK-RVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV----SSSDLVSKW 199 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~----~~~~~~~~~ 199 (330)
..++|++++++.+...+.. ..+...... .....++||+||||||||++|++++..+ +..++.. ++..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~-~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA-PRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC-SCEECCCTTCSTTTTSEEEC
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC-CCceecCCCcccccccccee
Confidence 3588999988777533321 111111110 1122379999999999999999999988 4444332 222222221
Q ss_pred cChhHH----HHHHHHHHHHhcCCeEEEEeCCcc---hhhHHHHHHHHhcCCC----------CCCcEEEEecCCCCC--
Q psy3808 200 LGESEK----LVKTLFELARAHRPSIIFIDERID---RGISNALFLLLSGVGN----------DMDGILVLGATNIPW-- 260 (330)
Q Consensus 200 ~~~~~~----~~~~~f~~a~~~~~~ii~iDe~~~---~~~~~~l~~~l~~~~~----------~~~~v~vi~ttn~~~-- 260 (330)
...... .....+..+ ..+|+|||| ++ ......++..++...- ...++.||+|||+++
T Consensus 372 ~~~~~~g~~~~~~G~l~~A---~~gil~IDE-id~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~ 447 (595)
T 3f9v_A 372 VREKGTGEYYLEAGALVLA---DGGIAVIDE-IDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGR 447 (595)
T ss_dssp SSGGGTSSCSEEECHHHHH---SSSEECCTT-TTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCC
T ss_pred eeccccccccccCCeeEec---CCCcEEeeh-hhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCc
Confidence 111000 000111122 347999999 55 4556677777764221 124578999999986
Q ss_pred -----------CcCHHHHhcccc-EEEecCCCHHHHHHHHHHHhcCC
Q psy3808 261 -----------VLDAAIRRRFEK-RIYIALPELNARLFMFRHHLGNT 295 (330)
Q Consensus 261 -----------~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~~ 295 (330)
.+++++++||+. .+..+.|+.+ ...|.++.+..+
T Consensus 448 ~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 448 YISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp SCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred cCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 899999999975 4556667777 888888777643
No 85
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=99.46 E-value=5.2e-13 Score=95.22 Aligned_cols=72 Identities=26% Similarity=0.469 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKG 75 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~ 75 (330)
.+++|++++++||++|++|+|++|+.+|+.+++.|...++.+ .+...++.++.++.+|++|+|.|+..+.+.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e-~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGT-KESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999988 668889999999999999999999999764
No 86
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=99.45 E-value=7.8e-13 Score=92.62 Aligned_cols=72 Identities=29% Similarity=0.492 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3808 4 FDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKGK 76 (330)
Q Consensus 4 ~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~~ 76 (330)
-.+|++++++|+++|++|+|++|+.+|+.+++.|...++.+ .++..++.++.++.+|++|+|.|+.++.+.+
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e-~d~~~k~~lr~K~~eYl~RAE~LK~~l~~~k 84 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGT-KDNTKRCNLREKISKYMDRAENIKKYLDQEK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35899999999999999999999999999999999999887 6688899999999999999999999987653
No 87
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.3e-12 Score=91.99 Aligned_cols=72 Identities=42% Similarity=0.646 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKG 75 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~ 75 (330)
.+++|+.++++|++.|+.|+|++|+.+|+.+++.|...++.+ .++..++.++.++.+|+.|+|.|+..+.+.
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e-~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~~ 80 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYE-KNPKSKDLIRAKFTEYLNRAEQLKKHLESE 80 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999999888 678889999999999999999999998654
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.43 E-value=1.8e-12 Score=119.09 Aligned_cols=199 Identities=11% Similarity=0.067 Sum_probs=123.4
Q ss_pred CCCCcccccchHHHHHHHHHHh-hcccCCcccccCCCCCCcceEE--ECCCCCchHHHHHHHHHHhC--------CCcEE
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAV-ILPIKFPQLFTGKRVPWKGILL--FGPPGTGKSYLAKAVATEAN--------NSTFF 188 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ill--~GppGtGKT~la~~la~~~~--------~~~~~ 188 (330)
|....++++|.+...+.+...+ ...... ....+..++| +||||+|||+|++.+++.+. +..++
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 3344578999998888887766 432211 0012357999 99999999999999998872 34566
Q ss_pred Eecccchhc------cc----------cCh-hHHHHHHHHHHHH-hcCCeEEEEeCCcchhh------HHHH---HHHHh
Q psy3808 189 SVSSSDLVS------KW----------LGE-SEKLVKTLFELAR-AHRPSIIFIDERIDRGI------SNAL---FLLLS 241 (330)
Q Consensus 189 ~~~~~~~~~------~~----------~~~-~~~~~~~~f~~a~-~~~~~ii~iDe~~~~~~------~~~l---~~~l~ 241 (330)
.+++....+ .. .+. .......+..... ...|.||+||| ++... ...+ ...+.
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe-~~~l~~~~~~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDE-FQSMLSSPRIAAEDLYTLLRVHE 169 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEES-THHHHSCTTSCHHHHHHHHTHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeC-HHHHhhccCcchHHHHHHHHHHH
Confidence 777532110 00 011 1222233333222 24578999999 66532 2333 33343
Q ss_pred cCCCCC--CcEEEEecCCCCC---CcC---HHHHhccccEEEecCCCHHHHHHHHHHHhcCC--CCCCChHhHHHHHHHc
Q psy3808 242 GVGNDM--DGILVLGATNIPW---VLD---AAIRRRFEKRIYIALPELNARLFMFRHHLGNT--RNTISDENLKELAKRT 311 (330)
Q Consensus 242 ~~~~~~--~~v~vi~ttn~~~---~l~---~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~--~~~~~~~~~~~la~~~ 311 (330)
...... .++.+|++|+.+. .++ +.+.++|...+.+++++.++..+++...+... ...+++..+..+++.+
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY 249 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 332112 5688888887654 344 66777887779999999999999998765422 1245777889999999
Q ss_pred C------CCCHHHHHHHHhhc
Q psy3808 312 E------GYSGADISTLERNF 326 (330)
Q Consensus 312 ~------g~~~~di~~l~~~a 326 (330)
. |... .+..+++.|
T Consensus 250 ~~~~~~~G~p~-~~~~l~~~a 269 (412)
T 1w5s_A 250 GEDKGGDGSAR-RAIVALKMA 269 (412)
T ss_dssp CGGGTSCCCHH-HHHHHHHHH
T ss_pred HHhccCCCcHH-HHHHHHHHH
Confidence 9 7544 455555544
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.41 E-value=5.6e-13 Score=128.48 Aligned_cols=197 Identities=21% Similarity=0.285 Sum_probs=120.7
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCc--EEEecccc
Q psy3808 117 MEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST--FFSVSSSD 194 (330)
Q Consensus 117 ~~~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~--~~~~~~~~ 194 (330)
...++..|++++|...+++.+...+.. ..+++|+||||||||++|+++++.+.... .+.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 467788999999999999988877731 24899999999999999999999873221 11111100
Q ss_pred hh--ccc-----cChhHH-------------------------------------------------HHHHHHH------
Q psy3808 195 LV--SKW-----LGESEK-------------------------------------------------LVKTLFE------ 212 (330)
Q Consensus 195 ~~--~~~-----~~~~~~-------------------------------------------------~~~~~f~------ 212 (330)
.. ... .+.... ....+|.
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 00 000 000000 0011111
Q ss_pred -----------------HHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC------------------CCCcEEEEec
Q psy3808 213 -----------------LARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN------------------DMDGILVLGA 255 (330)
Q Consensus 213 -----------------~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~------------------~~~~v~vi~t 255 (330)
......+++||||| .++...++.|+..++.-.- ...++.||++
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~a 258 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAA 258 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEE
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEe
Confidence 01113457999999 3334566777777763210 1135778999
Q ss_pred CCCC--CCcCHHHHhccc---cEEEecC--C-CHHHHHHHHHHHhcC-----CCCCCChHhHHHHHHHc---CCC-----
Q psy3808 256 TNIP--WVLDAAIRRRFE---KRIYIAL--P-ELNARLFMFRHHLGN-----TRNTISDENLKELAKRT---EGY----- 314 (330)
Q Consensus 256 tn~~--~~l~~~l~~Rf~---~~i~~~~--p-~~~~r~~il~~~l~~-----~~~~~~~~~~~~la~~~---~g~----- 314 (330)
||+. ..++++|++||. ..+.|+. + .......+++.+... ....+++..+..|.+.. .|.
T Consensus 259 tn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~ 338 (604)
T 3k1j_A 259 GNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLT 338 (604)
T ss_dssp ECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEE
T ss_pred cCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccc
Confidence 9976 679999999996 3455543 2 344555555444322 22356788888887754 553
Q ss_pred -CHHHHHHHHhhcc
Q psy3808 315 -SGADISTLERNFK 327 (330)
Q Consensus 315 -~~~di~~l~~~a~ 327 (330)
+.+++.++++.|.
T Consensus 339 ~~~R~l~~llr~A~ 352 (604)
T 3k1j_A 339 LRLRDLGGIVRAAG 352 (604)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 6789999988764
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.26 E-value=1.3e-11 Score=100.33 Aligned_cols=129 Identities=15% Similarity=0.103 Sum_probs=73.7
Q ss_pred cCCCCCcccccc----hHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC---CCcEEEe
Q psy3808 118 EKPNVKWTDVAG----LEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN---NSTFFSV 190 (330)
Q Consensus 118 ~~~~~~~~~~~G----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~---~~~~~~~ 190 (330)
.+.+.+|+++++ +..+.+.+.+++.... ..+..+++|+||||||||+|++++++.+. |..++.+
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 345678899886 4455555555553211 11236799999999999999999999872 4455666
Q ss_pred cccchhccccChhHH-HHHHHHHHHHhcCCeEEEEeCCcc-----hhhHHHHHHHHhcCCCCCCcEEEEecCCCCC
Q psy3808 191 SSSDLVSKWLGESEK-LVKTLFELARAHRPSIIFIDERID-----RGISNALFLLLSGVGNDMDGILVLGATNIPW 260 (330)
Q Consensus 191 ~~~~~~~~~~~~~~~-~~~~~f~~a~~~~~~ii~iDe~~~-----~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~ 260 (330)
+..++...+...... ....+.. ....|.+|+||| .+ ......+..++..... .+..+|.|||.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE-~~~~~~~~~~~~~l~~ll~~~~~--~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDD-LGSERLSDWQRELISYIITYRYN--NLKSTIITTNYSL 144 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEET-CSSSCCCHHHHHHHHHHHHHHHH--TTCEEEEECCCCS
T ss_pred EHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeC-CCCCcCCHHHHHHHHHHHHHHHH--cCCCEEEEcCCCh
Confidence 666554332111000 0001111 123678999999 43 3344555566654332 2344555666653
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.25 E-value=1.5e-10 Score=103.70 Aligned_cols=186 Identities=14% Similarity=0.169 Sum_probs=114.5
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh---
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV--- 196 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~--- 196 (330)
|....+.++|.+...+.|.+.+.. + +.++|+||+|+|||+|++.+++.. + ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~---~~v~i~G~~G~GKT~Ll~~~~~~~-~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y---PLTLLLGIRRVGKSSLLRAFLNER-P--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C---SEEEEECCTTSSHHHHHHHHHHHS-S--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C---CeEEEECCCcCCHHHHHHHHHHHc-C--cEEEEeecccccc
Confidence 455667899999999999887731 1 479999999999999999999987 4 4445443221
Q ss_pred ---------c---ccc-------------------------ChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhH------
Q psy3808 197 ---------S---KWL-------------------------GESEKLVKTLFELARAHRPSIIFIDERIDRGIS------ 233 (330)
Q Consensus 197 ---------~---~~~-------------------------~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~------ 233 (330)
. ... ......+..+...+....|.+|+||| ++....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe-~~~~~~~~~~~~ 148 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDE-AQYLRFYGSRGG 148 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEET-GGGGGGBTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeC-HHHHhccCccch
Confidence 0 000 01122222333333333489999999 665321
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCCC---------CcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhH
Q psy3808 234 NALFLLLSGVGNDMDGILVLGATNIPW---------VLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENL 304 (330)
Q Consensus 234 ~~l~~~l~~~~~~~~~v~vi~ttn~~~---------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~ 304 (330)
..+...+..+.....++.+|.|++... .....+..|+...+.+++.+.++..+++...+...+...++..+
T Consensus 149 ~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~ 228 (350)
T 2qen_A 149 KELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEI 228 (350)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred hhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 222333322211113455555543321 11112333555679999999999999998887766666778889
Q ss_pred HHHHHHcCCCCHHHHHHHHh
Q psy3808 305 KELAKRTEGYSGADISTLER 324 (330)
Q Consensus 305 ~~la~~~~g~~~~di~~l~~ 324 (330)
..+...++|+.. -|..++.
T Consensus 229 ~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 229 EEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp HHHHHHHTTCHH-HHHHHHH
T ss_pred HHHHHHhCCCHH-HHHHHHH
Confidence 999999999764 3554443
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.25 E-value=3.5e-11 Score=130.49 Aligned_cols=128 Identities=19% Similarity=0.310 Sum_probs=88.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHH---------------hcCCeEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELAR---------------AHRPSIIF 223 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~---------------~~~~~ii~ 223 (330)
+++||+||||||||++|+.+.....+..++.++++...+ ...+...+.... ...++|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 689999999999999996666655566777777665432 122233333220 12347999
Q ss_pred EeCCcch---------hhHHHHHHHHhc--CCCCC-------CcEEEEecCCCCC-----CcCHHHHhccccEEEecCCC
Q psy3808 224 IDERIDR---------GISNALFLLLSG--VGNDM-------DGILVLGATNIPW-----VLDAAIRRRFEKRIYIALPE 280 (330)
Q Consensus 224 iDe~~~~---------~~~~~l~~~l~~--~~~~~-------~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~ 280 (330)
||| ++. .....+...++. +.... .++.+|+|+|+|. .+++++.||| .++.++.|+
T Consensus 1342 iDE-inmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~ 1419 (2695)
T 4akg_A 1342 CDE-INLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYPS 1419 (2695)
T ss_dssp EET-TTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCT
T ss_pred ecc-cccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCCCC
Confidence 999 431 234445555542 11111 2489999999994 8999999999 789999999
Q ss_pred HHHHHHHHHHHhcC
Q psy3808 281 LNARLFMFRHHLGN 294 (330)
Q Consensus 281 ~~~r~~il~~~l~~ 294 (330)
.+++..|+..++..
T Consensus 1420 ~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1420 GKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
No 93
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.19 E-value=1.9e-11 Score=127.48 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCC----------cccccC-----------------CCCCCcc--eEEECCCCC
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKF----------PQLFTG-----------------KRVPWKG--ILLFGPPGT 169 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~----------~~~~~~-----------------~~~~~~~--ill~GppGt 169 (330)
.+.++|+++.|++++++.+.+.+.+++.. +..+.. .+-+|++ +++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999888833 233332 1223345 999999999
Q ss_pred chHHHHHHHHHHh--CCCcEEEecccchh------------ccccCh----hHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 170 GKSYLAKAVATEA--NNSTFFSVSSSDLV------------SKWLGE----SEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 170 GKT~la~~la~~~--~~~~~~~~~~~~~~------------~~~~~~----~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
|||+||++++.+. ++.+.+.++..+.. ++|+++ +++.++.+|..++...|++||+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~ 1168 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 1168 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCc
Confidence 9999999999876 34455555655433 567777 789999999999999999999999
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.18 E-value=9.6e-11 Score=92.01 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=67.6
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch---h
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR---G 231 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~---~ 231 (330)
+...++|+||+|+|||+|++++++.+. |..++.++..++... +....|.+|+||| .+. .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE-~~~~~~~ 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQ-VEKLGNE 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEES-TTCCCSH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeC-ccccChH
Confidence 346799999999999999999999872 344667776665433 1123578999999 432 2
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEecCCCCCCc--CHHHHhccccEEEecC
Q psy3808 232 ISNALFLLLSGVGNDMDGILVLGATNIPWVL--DAAIRRRFEKRIYIAL 278 (330)
Q Consensus 232 ~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l--~~~l~~Rf~~~i~~~~ 278 (330)
....+..++.........++||++...|..+ .+.+.+|+..-..+..
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 2555666665543331223555444345433 2899999876555543
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.08 E-value=9.1e-10 Score=98.79 Aligned_cols=180 Identities=18% Similarity=0.183 Sum_probs=108.3
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh--
Q psy3808 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV-- 196 (330)
Q Consensus 119 ~~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-- 196 (330)
.+......++|.+...+.|.+ +.. +.++|+||+|+|||+|++.+++.. +..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~ 69 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINEL-NLPYIYLDLRKFEER 69 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHH-TCCEEEEEGGGGTTC
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhc-CCCEEEEEchhhccc
Confidence 345566789999988888887 521 379999999999999999999988 3445666654320
Q ss_pred ---c--ccc------------------------------C---h------hHHHHHHHHHHHHhc--CCeEEEEeCCcch
Q psy3808 197 ---S--KWL------------------------------G---E------SEKLVKTLFELARAH--RPSIIFIDERIDR 230 (330)
Q Consensus 197 ---~--~~~------------------------------~---~------~~~~~~~~f~~a~~~--~~~ii~iDe~~~~ 230 (330)
+ .+. + . ....+..++...... .|.+|+||| ++.
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe-~~~ 148 (357)
T 2fna_A 70 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDE-AQE 148 (357)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEET-GGG
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEEC-HHH
Confidence 0 000 0 0 001123344333332 388999999 654
Q ss_pred h-------hHHHHHHHHhcCCCCCCcEEEEecCCCCCCc---------CHHHHhccccEEEecCCCHHHHHHHHHHHhcC
Q psy3808 231 G-------ISNALFLLLSGVGNDMDGILVLGATNIPWVL---------DAAIRRRFEKRIYIALPELNARLFMFRHHLGN 294 (330)
Q Consensus 231 ~-------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l---------~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~ 294 (330)
. ....+..+.+.. .++.+|.|++....+ ...+..|+...+.+++.+.++..+++...+..
T Consensus 149 ~~~~~~~~~~~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~ 224 (357)
T 2fna_A 149 LVKLRGVNLLPALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE 224 (357)
T ss_dssp GGGCTTCCCHHHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccCchhHHHHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH
Confidence 2 223343343332 245555555432111 11233355567999999999999999887654
Q ss_pred CCCCCChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 295 TRNTISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 295 ~~~~~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
.+...++ ...+...++|+.. -+..++
T Consensus 225 ~~~~~~~--~~~i~~~t~G~P~-~l~~~~ 250 (357)
T 2fna_A 225 ADIDFKD--YEVVYEKIGGIPG-WLTYFG 250 (357)
T ss_dssp HTCCCCC--HHHHHHHHCSCHH-HHHHHH
T ss_pred cCCCCCc--HHHHHHHhCCCHH-HHHHHH
Confidence 3433333 3788888998754 344443
No 96
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.08 E-value=3.3e-10 Score=103.15 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=114.2
Q ss_pred cccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccc--
Q psy3808 124 WTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKW-- 199 (330)
Q Consensus 124 ~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~-- 199 (330)
+..++|.....+.+.+.+.... .....++|+|++|||||++|++++... ...+|+.++|+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4567776666666655543211 112468999999999999999999876 23689999998753211
Q ss_pred -----------cChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCC-----C---CCcEEEEecCCC
Q psy3808 200 -----------LGESEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGN-----D---MDGILVLGATNI 258 (330)
Q Consensus 200 -----------~~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~-----~---~~~v~vi~ttn~ 258 (330)
.|... .....|..+ ..++||+|| .++...+..++..++...- . ...+.+|+|||.
T Consensus 206 ~elfg~~~g~~tga~~-~~~g~~~~a---~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVS-SKEGFFELA---DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp HHHHCBCTTSSTTCCS-CBCCHHHHT---TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred HHhcCCCCCCCCCccc-ccCCceeeC---CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 11000 011233333 247999999 3345566677777764211 0 124778999986
Q ss_pred C-------CCcCHHHHhccccEEEecCCCH----HHHHHHHHHHhc----CCC---CCCChHhHHHHHHHcCCCCHHHHH
Q psy3808 259 P-------WVLDAAIRRRFEKRIYIALPEL----NARLFMFRHHLG----NTR---NTISDENLKELAKRTEGYSGADIS 320 (330)
Q Consensus 259 ~-------~~l~~~l~~Rf~~~i~~~~p~~----~~r~~il~~~l~----~~~---~~~~~~~~~~la~~~~g~~~~di~ 320 (330)
. ..+.+.+..|+.. +.+..|.. ++...+.++++. ..+ ..+++..+..|.....--+.++|.
T Consensus 282 ~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~ 360 (387)
T 1ny5_A 282 NIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 360 (387)
T ss_dssp CHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHH
T ss_pred CHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHH
Confidence 4 3456677777743 44455544 344445555443 222 235677777777765434456999
Q ss_pred HHHhhccc
Q psy3808 321 TLERNFKV 328 (330)
Q Consensus 321 ~l~~~a~~ 328 (330)
+++++|.+
T Consensus 361 ~~i~~~~~ 368 (387)
T 1ny5_A 361 NVIERAVL 368 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 97
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=99.03 E-value=2.2e-11 Score=101.84 Aligned_cols=73 Identities=29% Similarity=0.485 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKGK 76 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l~~~~ 76 (330)
++..|+.++++|+++|++|+|++|+.+|+.+++.|..+++.+ .++..++.++.++.+|++|+|.||+++.+.+
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e-~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~k 91 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGT-KDNTKRCNLREKISKYMDRAENIKKYLDQEK 91 (257)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 477999999999999999999999999999999999999888 6688899999999999999999999998754
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.93 E-value=6.6e-10 Score=91.78 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=58.3
Q ss_pred CCCCCcccccchH----HHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 119 KPNVKWTDVAGLE----AAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 119 ~~~~~~~~~~G~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
....+|+++++.. .+.+.+..++.... ...++.+++|+||||||||++|++++..+ .+.+++.+++
T Consensus 19 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 19 ILRASLSDVDLNDDGRIKAIRFAERFVAEYE--------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp GGCCCTTSSCCSSHHHHHHHHHHHHHHHHCC--------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HHcCCHhhccCCChhHHHHHHHHHHHHHHhh--------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 3567899999744 24444444443210 01122689999999999999999999987 2456777777
Q ss_pred cchhccccChh-HHHHHHHHHHHHhcCCeEEEEeCCc
Q psy3808 193 SDLVSKWLGES-EKLVKTLFELARAHRPSIIFIDERI 228 (330)
Q Consensus 193 ~~~~~~~~~~~-~~~~~~~f~~a~~~~~~ii~iDe~~ 228 (330)
.++........ ...+..++.... .+.+|+||| +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDe-i 124 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDD-L 124 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEE-E
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcC-C
Confidence 66543221100 000112222222 245999999 5
No 99
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.90 E-value=1.9e-08 Score=90.78 Aligned_cols=190 Identities=18% Similarity=0.217 Sum_probs=114.5
Q ss_pred ccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC-CCcEEEecccchhcccc---
Q psy3808 125 TDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSSDLVSKWL--- 200 (330)
Q Consensus 125 ~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~~~--- 200 (330)
.+++|.......+...+.... .....++++|++||||+++|+++....+ ...|+.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 457777666665555442211 1123699999999999999999998762 12399999987633211
Q ss_pred ----------ChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHHHHHhcCCCC--------CCcEEEEecCCCC-
Q psy3808 201 ----------GESEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALFLLLSGVGND--------MDGILVLGATNIP- 259 (330)
Q Consensus 201 ----------~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~~~l~~~~~~--------~~~v~vi~ttn~~- 259 (330)
|... .....|+.+ ..++||+|| .++...+..++..++.-.-. .-.+.+|++||..
T Consensus 199 lfg~~~g~~tga~~-~~~g~~~~a---~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l 274 (368)
T 3dzd_A 199 LFGHEKGAFTGALT-RKKGKLELA---DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNL 274 (368)
T ss_dssp HHEECSCSSSSCCC-CEECHHHHT---TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCH
T ss_pred hcCccccccCCccc-ccCChHhhc---CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCH
Confidence 0000 001233333 336999999 33445666777777642111 1146788888764
Q ss_pred ------CCcCHHHHhccccE-EEecCCCH--HHHHHHHHHHhcC----CC---CCCChHhHHHHHHHcCCCCHHHHHHHH
Q psy3808 260 ------WVLDAAIRRRFEKR-IYIALPEL--NARLFMFRHHLGN----TR---NTISDENLKELAKRTEGYSGADISTLE 323 (330)
Q Consensus 260 ------~~l~~~l~~Rf~~~-i~~~~p~~--~~r~~il~~~l~~----~~---~~~~~~~~~~la~~~~g~~~~di~~l~ 323 (330)
..+.+.|..|+... |.+|+... ++...++++++.. .+ ..+++..+..|......-+.+++.+++
T Consensus 275 ~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i 354 (368)
T 3dzd_A 275 EEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLI 354 (368)
T ss_dssp HHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHH
Confidence 23556777787542 55555443 4455555555432 22 346788888888776444568899999
Q ss_pred hhccc
Q psy3808 324 RNFKV 328 (330)
Q Consensus 324 ~~a~~ 328 (330)
+.|..
T Consensus 355 ~~~~~ 359 (368)
T 3dzd_A 355 ERAVI 359 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 100
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.89 E-value=1.5e-09 Score=75.16 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=47.0
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 277 ALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 277 ~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
|+|+.++|.+||+.++.+.+.. ++.++..||..|+||||+||.++|++|.+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~ 52 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMY 52 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999887643 678999999999999999999999999763
No 101
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.84 E-value=2.1e-09 Score=87.55 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=58.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcchhhHH----
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISN---- 234 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~~~~~---- 234 (330)
++++|+||||||||++|.++++.+.+ .++.+.-+ .+.+. +... ....||++|| .+.....
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g-~i~~fans--~s~f~----------l~~l--~~~kIiiLDE-ad~~~~~~~d~ 122 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG-AVISFVNS--TSHFW----------LEPL--TDTKVAMLDD-ATTTCWTYFDT 122 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC-EECCCCCS--SSCGG----------GGGG--TTCSSEEEEE-ECHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC-CeeeEEec--cchhh----------hccc--CCCCEEEEEC-CCchhHHHHHH
Confidence 57999999999999999999999943 33221110 00000 0110 1234899999 7644322
Q ss_pred HHHHHHhcCC----CCC------CcEEEEecCCCCC---CcCHHHHhccccEEEecCC
Q psy3808 235 ALFLLLSGVG----NDM------DGILVLGATNIPW---VLDAAIRRRFEKRIYIALP 279 (330)
Q Consensus 235 ~l~~~l~~~~----~~~------~~v~vi~ttn~~~---~l~~~l~~Rf~~~i~~~~p 279 (330)
.+...+++.. ... ...-+|.|||.+- ..-+.|.+|+ ..+.|+.|
T Consensus 123 ~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 123 YMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp HCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred HHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 3444455421 000 1123445777642 2336788898 56777754
No 102
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=75.12 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=48.0
Q ss_pred EecCCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 275 YIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 275 ~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
.-.+||.++|.+||+.++.+.+.. ++.++..||+.|+||||+||.++|++|.+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~ 60 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMY 60 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 347899999999999999887653 678999999999999999999999999763
No 103
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.79 E-value=1.7e-08 Score=92.26 Aligned_cols=142 Identities=19% Similarity=0.103 Sum_probs=79.0
Q ss_pred ccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHH-HHHhCCCcEEEe-ccc---chhccccC
Q psy3808 127 VAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAV-ATEANNSTFFSV-SSS---DLVSKWLG 201 (330)
Q Consensus 127 ~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~l-a~~~~~~~~~~~-~~~---~~~~~~~~ 201 (330)
|.|++.+|..|.-.+.-.- .. ....-++||.|+||| ||++|+++ +..++ ...+.. .++ .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~--~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~p-R~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCV--GK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAP-RGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCC--SS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCS-SEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCc--cc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCC-CeEEecCCCCCccCceEEEEc
Confidence 8899998888776552211 00 011127999999999 99999999 76653 322221 111 11111000
Q ss_pred hhHH-HHHHHHHHHHhcCCeEEEEeCCcch---hhHHHHHHHHhcCC------CCCCcEEEEecCCCCC-----------
Q psy3808 202 ESEK-LVKTLFELARAHRPSIIFIDERIDR---GISNALFLLLSGVG------NDMDGILVLGATNIPW----------- 260 (330)
Q Consensus 202 ~~~~-~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~l~~~l~~~~------~~~~~v~vi~ttn~~~----------- 260 (330)
.+.. .-...+..| ..+++|+|| +++ ..+..++..|+.-. .-..++.||+|+|+.+
T Consensus 286 ~tG~~~~~G~l~LA---dgGvl~lDE-In~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~ 361 (506)
T 3f8t_A 286 DRGWALRAGAAVLA---DGGILAVDH-LEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARI 361 (506)
T ss_dssp SSSEEEEECHHHHT---TTSEEEEEC-CTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGC
T ss_pred CCCcccCCCeeEEc---CCCeeehHh-hhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCcccc
Confidence 0000 000111122 237999999 554 45566666665321 1124688999999875
Q ss_pred CcCHHHHhccccEEE-ecCCCH
Q psy3808 261 VLDAAIRRRFEKRIY-IALPEL 281 (330)
Q Consensus 261 ~l~~~l~~Rf~~~i~-~~~p~~ 281 (330)
.+++++++||+..+. ++.|+.
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~ 383 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRP 383 (506)
T ss_dssp CSCHHHHTTCSEEEETTC----
T ss_pred CCChHHhhheeeEEEecCCCCh
Confidence 788999999987543 344543
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.77 E-value=2e-08 Score=89.91 Aligned_cols=149 Identities=15% Similarity=0.034 Sum_probs=98.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--C-CcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch----h
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--N-STFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR----G 231 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~----~ 231 (330)
+.+||+||+|.||++.+..++..+. + .++..+... + .......+..+.........-||+||+ .+. .
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~--~~~~~~l~~~~~~~plf~~~kvvii~~-~~~kl~~~ 92 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P--NTDWNAIFSLCQAMSLFASRQTLLLLL-PENGPNAA 92 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T--TCCHHHHHHHHHHHHHCCSCEEEEEEC-CSSCCCTT
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C--CCCHHHHHHHhcCcCCccCCeEEEEEC-CCCCCChH
Confidence 5799999999999999999998762 2 122212111 1 012223333333333334567999999 544 4
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEecCCCC------CCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCChHhHH
Q psy3808 232 ISNALFLLLSGVGNDMDGILVLGATNIP------WVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISDENLK 305 (330)
Q Consensus 232 ~~~~l~~~l~~~~~~~~~v~vi~ttn~~------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~ 305 (330)
..+.+...+.. +.+.+++|.+++.+ ..+.+++.+|+ ..+.+.+++..+....++..+...+..+++..+.
T Consensus 93 ~~~aLl~~le~---p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~ 168 (343)
T 1jr3_D 93 INEQLLTLTGL---LHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQ 168 (343)
T ss_dssp HHHHHHHHHTT---CBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHH
T ss_pred HHHHHHHHHhc---CCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55566666654 33444444444332 34667888888 5789999999999999999998888888999999
Q ss_pred HHHHHcCCCCHH
Q psy3808 306 ELAKRTEGYSGA 317 (330)
Q Consensus 306 ~la~~~~g~~~~ 317 (330)
.|++.++|-...
T Consensus 169 ~l~~~~~gdl~~ 180 (343)
T 1jr3_D 169 VLCYCYEGNLLA 180 (343)
T ss_dssp HHHHSSTTCHHH
T ss_pred HHHHHhchHHHH
Confidence 999999885543
No 105
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.76 E-value=3.2e-09 Score=93.56 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=57.4
Q ss_pred CCCCcccccchH----HHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhC---CCcEEEecc
Q psy3808 120 PNVKWTDVAGLE----AAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEAN---NSTFFSVSS 192 (330)
Q Consensus 120 ~~~~~~~~~G~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~---~~~~~~~~~ 192 (330)
...+|+++++.. .+...+..++... ...+..+++|+||||||||+||.+++..+. +.+++.+++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~---------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY---------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC---------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc---------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 357899998633 2444444444221 011236899999999999999999999763 456777777
Q ss_pred cchhccccChh-HHHHHHHHHHHHhcCCeEEEEeCCcc
Q psy3808 193 SDLVSKWLGES-EKLVKTLFELARAHRPSIIFIDERID 229 (330)
Q Consensus 193 ~~~~~~~~~~~-~~~~~~~f~~a~~~~~~ii~iDe~~~ 229 (330)
.++........ .......+... ..+.+|+||| ++
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDd-ig 224 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDD-IG 224 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHH--HTSSEEEEET-CC
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcC-CC
Confidence 66544322110 11111112221 2346999999 53
No 106
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.76 E-value=7.1e-09 Score=85.17 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=71.3
Q ss_pred ceEEECCCCCchHHHHHHHHHHh-------CC-CcEEEecccchhcccc----------ChhHH--HHHHHHHHH--Hhc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA-------NN-STFFSVSSSDLVSKWL----------GESEK--LVKTLFELA--RAH 217 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~-------~~-~~~~~~~~~~~~~~~~----------~~~~~--~~~~~f~~a--~~~ 217 (330)
-++++|+||||||++|..++... .| .+++..+..++...+. ..... ....++..+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 58899999999999988865442 23 5565555544422111 11100 011222221 223
Q ss_pred CCeEEEEeCCcchhh--------HHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEecCCCHHHH
Q psy3808 218 RPSIIFIDERIDRGI--------SNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNAR 284 (330)
Q Consensus 218 ~~~ii~iDe~~~~~~--------~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r 284 (330)
.++||+||| .+... ...++..+... ...++-+|.+|+++..++.++++|+...+.++.|....+
T Consensus 87 ~~~vliIDE-Aq~l~~~~~~~~e~~rll~~l~~~--r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 87 IGSIVIVDE-AQDVWPARSAGSKIPENVQWLNTH--RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMR 158 (199)
T ss_dssp TTCEEEETT-GGGTSBCCCTTCCCCHHHHGGGGT--TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCCE
T ss_pred CceEEEEEC-hhhhccCccccchhHHHHHHHHhc--CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccCcc
Confidence 467999999 43321 11233334332 223455666777799999999999999999988655443
No 107
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.71 E-value=6.4e-08 Score=82.45 Aligned_cols=115 Identities=20% Similarity=0.310 Sum_probs=65.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeC-CcchhhHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-RIDRGISNAL 236 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe-~~~~~~~~~l 236 (330)
.++++|+||||||||++|.++|+.+ +. .-.++.+. +.+. +. ......|+++|| .+.......+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~-~l-~G~vn~~~--~~f~----------l~--~~~~k~i~l~Ee~~~~~d~~~~l 167 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV-PF-YGCVNWTN--ENFP----------FN--DCVDKMVIWWEEGKMTAKVVESA 167 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS-SC-EEECCTTC--SSCT----------TG--GGSSCSEEEECSCCEETTTHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh-cc-cceeeccc--cccc----------cc--cccccEEEEeccccchhHHHHHH
Confidence 4689999999999999999999976 22 22333211 1110 11 112234666666 2334444556
Q ss_pred HHHHhcCCC----C------CCcEEEEecCCC-C----------CCcCHHHHhccccEEEec--------CCCHHHHHHH
Q psy3808 237 FLLLSGVGN----D------MDGILVLGATNI-P----------WVLDAAIRRRFEKRIYIA--------LPELNARLFM 287 (330)
Q Consensus 237 ~~~l~~~~~----~------~~~v~vi~ttn~-~----------~~l~~~l~~Rf~~~i~~~--------~p~~~~r~~i 287 (330)
..++.+-.. . .....+|.|||. + ....+.|.+|+ ..+.|+ +.+.++-...
T Consensus 168 r~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~lt~~~~~~f 246 (267)
T 1u0j_A 168 KAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGKVTKQEVKDF 246 (267)
T ss_dssp HHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCCCCHHHHHHH
T ss_pred HHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCCCCHHHHHHH
Confidence 666652111 1 023445556665 2 24457899987 667776 4556666666
Q ss_pred HH
Q psy3808 288 FR 289 (330)
Q Consensus 288 l~ 289 (330)
|+
T Consensus 247 ~~ 248 (267)
T 1u0j_A 247 FR 248 (267)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.70 E-value=6.4e-08 Score=106.12 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=84.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHH----H------------hcCCeEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELA----R------------AHRPSII 222 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a----~------------~~~~~ii 222 (330)
+++||+||||||||+++..+...+.+.+++.++++.-.+ ...+...++.. + ..+..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 579999999999998887766666556677777765432 12222222211 0 0123599
Q ss_pred EEeCCcch---------hhHHHHHHHHhcC--CCC-------CCcEEEEecCCCC-----CCcCHHHHhccccEEEecCC
Q psy3808 223 FIDERIDR---------GISNALFLLLSGV--GND-------MDGILVLGATNIP-----WVLDAAIRRRFEKRIYIALP 279 (330)
Q Consensus 223 ~iDe~~~~---------~~~~~l~~~l~~~--~~~-------~~~v~vi~ttn~~-----~~l~~~l~~Rf~~~i~~~~p 279 (330)
|||| ++. .....+..+++.. ... ..++.+|+|+|+| ..+++++.||| ..++++.|
T Consensus 1379 FiDD-iNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i~~p 1456 (3245)
T 3vkg_A 1379 FCDE-INLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLVDFP 1456 (3245)
T ss_dssp EETT-TTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEECCCC
T ss_pred Eecc-cCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEeCCC
Confidence 9999 431 2334455555421 111 1357899999988 46899999999 56999999
Q ss_pred CHHHHHHHHHHHhc
Q psy3808 280 ELNARLFMFRHHLG 293 (330)
Q Consensus 280 ~~~~r~~il~~~l~ 293 (330)
+.++...|+..++.
T Consensus 1457 s~esL~~If~til~ 1470 (3245)
T 3vkg_A 1457 STSSLTQIYGTFNR 1470 (3245)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999876554
No 109
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.69 E-value=1.6e-08 Score=88.39 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=43.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCc--EEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNST--FFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
+.++|+||||||||+||.+++... +.+ |+.+...+..+.+....+..+..+++...... +|+||+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDs 190 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDS 190 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-HTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-CCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEec
Confidence 457999999999999999999874 333 55552233333333445556666666665544 999999
No 110
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.60 E-value=2.4e-07 Score=101.10 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=85.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeCCcch---hhHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDR---GISNA 235 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe~~~~---~~~~~ 235 (330)
.++++.||+|||||++++++|+.+ |.+++.++|++-+. ...+..+|.-+...+ +.+++|| +++ .+...
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~l-g~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE-~nr~~~evLs~ 716 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNL-GRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDE-FNRLDEKVLSA 716 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTT-TCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEET-TTSSCHHHHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHh-CCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehh-hhhcChHHHHH
Confidence 478999999999999999999999 89999999986543 233456666555444 6999999 553 33333
Q ss_pred HHHHHhc----CC-------------CCCCcEEEEecCCCC----CCcCHHHHhccccEEEecCCCHHHHHHHHH
Q psy3808 236 LFLLLSG----VG-------------NDMDGILVLGATNIP----WVLDAAIRRRFEKRIYIALPELNARLFMFR 289 (330)
Q Consensus 236 l~~~l~~----~~-------------~~~~~v~vi~ttn~~----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~ 289 (330)
+..++.. +. .-...+.+++|.|+. ..+++++++|| +.+.+..||.+...+|+-
T Consensus 717 l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 717 VSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 3222211 10 011345667788854 36889999999 679999999999888753
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.59 E-value=6e-07 Score=72.37 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=21.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.+.|.||+|||||||++.+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 112
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.52 E-value=5.8e-08 Score=68.61 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 280 ELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 280 ~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
|.++|.+||+.++.+.+.. ++.++..||+.|+||||+||.++|++|.+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~ 50 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMF 50 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 5678999999999887754 678999999999999999999999999763
No 113
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.48 E-value=1.1e-07 Score=66.49 Aligned_cols=49 Identities=16% Similarity=0.292 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 280 ELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 280 ~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
|.++|.+||+.++.+.+.. ++.++..||+.|+||||+||.++|++|.+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~ 50 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGML 50 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6789999999999887653 678999999999999999999999999864
No 114
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.32 E-value=9.7e-06 Score=77.78 Aligned_cols=170 Identities=16% Similarity=0.105 Sum_probs=94.0
Q ss_pred CCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh------CCCcEEEecccch
Q psy3808 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA------NNSTFFSVSSSDL 195 (330)
Q Consensus 122 ~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~------~~~~~~~~~~~~~ 195 (330)
.....++|.+...+.|.+.+... ....+-++|+||+|+|||+||..+++.. ....++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 44567999999999999887321 1123569999999999999999987421 1112333333221
Q ss_pred -----hccc------c-----------ChhHHHHHHHHHHHHh-cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEE
Q psy3808 196 -----VSKW------L-----------GESEKLVKTLFELARA-HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILV 252 (330)
Q Consensus 196 -----~~~~------~-----------~~~~~~~~~~f~~a~~-~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~v 252 (330)
.... . .........+...... ..|.+|++|+ .+... .+..+. .+..|
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDd-v~~~~------~l~~l~---~~~~i 260 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDD-VWDSW------VLKAFD---SQCQI 260 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEE-ECCHH------HHHTTC---SSCEE
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeC-CCCHH------HHHHhc---CCCeE
Confidence 0000 0 0111222222222222 2688999999 65421 222331 34455
Q ss_pred EecCCCCCCcCHHHHhccccEEEec---CCCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 253 LGATNIPWVLDAAIRRRFEKRIYIA---LPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 253 i~ttn~~~~l~~~l~~Rf~~~i~~~---~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
|.||..+..... . . +..+.++ +.+.++-.+++...+...... .......|++.++|+.-
T Consensus 261 lvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 261 LLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKAD-LPEQAHSIIKECKGSPL 322 (591)
T ss_dssp EEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGG-SCTHHHHHHHHHTTCHH
T ss_pred EEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCccc-ccHHHHHHHHHhCCCcH
Confidence 556654321110 0 0 2334443 678888888888877542211 23467889999988654
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.24 E-value=2.7e-06 Score=90.25 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=50.9
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh----ccc------------cChhHHHHHHHHHHHHhcC
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV----SKW------------LGESEKLVKTLFELARAHR 218 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~----~~~------------~~~~~~~~~~~f~~a~~~~ 218 (330)
+.++++|+||||||||+||.+++.+. .|.....++..+.. ... +...+..+..++..++..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~ 1505 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1505 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCC
Confidence 44689999999999999999998876 23345555554321 111 2234567777888888899
Q ss_pred CeEEEEeC
Q psy3808 219 PSIIFIDE 226 (330)
Q Consensus 219 ~~ii~iDe 226 (330)
|++|+||+
T Consensus 1506 ~~lVVIDs 1513 (2050)
T 3cmu_A 1506 VDVIVVDS 1513 (2050)
T ss_dssp CSEEEESC
T ss_pred CCEEEEcC
Confidence 99999999
No 116
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.23 E-value=3.1e-06 Score=78.61 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=80.8
Q ss_pred CeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEec---------CC---CCCCcCHHHHhccccEEEecCCCHHHHHH
Q psy3808 219 PSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGA---------TN---IPWVLDAAIRRRFEKRIYIALPELNARLF 286 (330)
Q Consensus 219 ~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~t---------tn---~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~ 286 (330)
|.|+|||| .+......+..++..++.+...++|++| ++ .|..+++.+++||.. +.|++|+.++...
T Consensus 296 ~~VliIDE-a~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~-~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 296 PGVLFVDE-VHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI-IRTMLYTPQEMKQ 373 (456)
T ss_dssp ECEEEEES-GGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE-EECCCCCHHHHHH
T ss_pred ceEEEEec-hhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcce-eeCCCCCHHHHHH
Confidence 36999999 7777666666666666666666655555 32 267899999999966 6999999999999
Q ss_pred HHHHHhcCCCCCCChHhHHHHHHHc-CCCCHHHHHHHHhhc
Q psy3808 287 MFRHHLGNTRNTISDENLKELAKRT-EGYSGADISTLERNF 326 (330)
Q Consensus 287 il~~~l~~~~~~~~~~~~~~la~~~-~g~~~~di~~l~~~a 326 (330)
+++..+...+..+++..+..+++.+ .| +.+....+++.|
T Consensus 374 iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a 413 (456)
T 2c9o_A 374 IIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPA 413 (456)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHH
Confidence 9998887667778899999999988 66 555555566554
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.22 E-value=1.2e-05 Score=88.82 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=83.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhccccChhHHHHHHHHHHHHhcCCeEEEEeC--CcchhhHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE--RIDRGISNALF 237 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~ii~iDe--~~~~~~~~~l~ 237 (330)
+..+.||+|||||.+++.+|+.+ |.+++.++|++-+. ...+..+|.-+... .+-.++|| +++..+...+.
T Consensus 606 gg~~~GPaGtGKTet~k~La~~l-gr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSvv~ 677 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQL-GRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERILSAVS 677 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh-CCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHHHH
Confidence 57899999999999999999999 89999999976543 22345555544443 35788999 33333333333
Q ss_pred HHHhc-------------CC-C----CCCcEEEEecCCCC----CCcCHHHHhccccEEEecCCCHHHHHHHHH
Q psy3808 238 LLLSG-------------VG-N----DMDGILVLGATNIP----WVLDAAIRRRFEKRIYIALPELNARLFMFR 289 (330)
Q Consensus 238 ~~l~~-------------~~-~----~~~~v~vi~ttn~~----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~ 289 (330)
..+.. +. . -...+.++.|.|+. ..++..+.+|| +.+.++.||.+...+|+-
T Consensus 678 ~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 678 QQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp HHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHH
Confidence 32220 00 0 11245667788853 46889999999 679999999998888763
No 118
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.09 E-value=1e-06 Score=79.43 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=26.2
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
++..++|+|||||||||+++++++.++ ..++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~-g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCG-GKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC-CEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC-CcEEE
Confidence 345799999999999999999999884 44443
No 119
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.08 E-value=2.5e-07 Score=64.39 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCHHHHHHHHhhcccc
Q psy3808 282 NARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERNFKVD 329 (330)
Q Consensus 282 ~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~~di~~l~~~a~~~ 329 (330)
++|.+||+.++.+.+. .++.++..||..|+||||+||.++|++|.+.
T Consensus 1 ~~R~~Il~~~l~~~~~-~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ 47 (82)
T 2dzn_B 1 MERRLIFGTIASKMSL-APEADLDSLIIRNDSLSGAVIAAIMQEAGLR 47 (82)
T ss_dssp -------------CEE-CTTCCSTTTTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCC-CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3688999999887654 2567899999999999999999999999763
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.05 E-value=1.3e-05 Score=66.91 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++|+||||+|||+|++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999664
No 121
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.01 E-value=3.7e-06 Score=67.41 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=30.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
..|+|+|+|||||||+++.++..+ +.+++.++.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l-~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL-PEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS-SSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCCeEEeccchH
Confidence 468999999999999999999999 577877665543
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.01 E-value=1e-05 Score=75.15 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=36.8
Q ss_pred ccccccCCCCCccccc-chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 113 GAIVMEKPNVKWTDVA-GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~-G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+..++.+.+|+++- ++..+...+...+.. ....++|.||||||||+++.+++..+
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4456677788888886 566666666655521 11379999999999999999999877
No 123
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.01 E-value=9.5e-05 Score=70.25 Aligned_cols=168 Identities=11% Similarity=0.017 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHH----Hh----CCCcEEEecccc---h-
Q psy3808 128 AGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVAT----EA----NNSTFFSVSSSD---L- 195 (330)
Q Consensus 128 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~----~~----~~~~~~~~~~~~---~- 195 (330)
+|.+..++.|.+.+... .....+.+.|+|++|+|||+||+.+++ .. .+..++.++... .
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999998877321 111235789999999999999999996 23 112233333321 1
Q ss_pred ------hccccC-----------h-hHHHHHHHHHHHHhc-CCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcEEEEecC
Q psy3808 196 ------VSKWLG-----------E-SEKLVKTLFELARAH-RPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGAT 256 (330)
Q Consensus 196 ------~~~~~~-----------~-~~~~~~~~f~~a~~~-~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~tt 256 (330)
...... . ....+...+...... +..+|++|+ +.....-.+ ... .+..||.||
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDd-v~~~~~~~~---~~~-----~gs~ilvTT 272 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDD-VVQEETIRW---AQE-----LRLRCLVTT 272 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEE-ECCHHHHHH---HHH-----TTCEEEEEE
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEEC-CCCchhhcc---ccc-----CCCEEEEEc
Confidence 000000 0 011122222222234 378999999 655332211 111 234455566
Q ss_pred CCCCCcCHHHHhccccEEEecCCCHHHHHHHHHHHhcCCCCCCCh--HhHHHHHHHcCCCCH
Q psy3808 257 NIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTISD--ENLKELAKRTEGYSG 316 (330)
Q Consensus 257 n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~--~~~~~la~~~~g~~~ 316 (330)
....... . .......+.++..+.++-.++|......... .++ .....+++.+.|..-
T Consensus 273 R~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPL 331 (549)
T 2a5y_B 273 RDVEISN-A-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPA 331 (549)
T ss_dssp SBGGGGG-G-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHH-H-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChH
Confidence 5322111 0 0012245888999999999999887543321 111 245677777877543
No 124
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.00 E-value=9.3e-05 Score=67.71 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=45.6
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhc--------------------cccChhHHHHHHHHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVS--------------------KWLGESEKLVKTLFELA 214 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~f~~a 214 (330)
++.-+++.|++|+||||++..+|..+ .|..+..++++.... .........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999876 234444444332100 00112334455666677
Q ss_pred HhcCCeEEEEeC
Q psy3808 215 RAHRPSIIFIDE 226 (330)
Q Consensus 215 ~~~~~~ii~iDe 226 (330)
....+.+|+||.
T Consensus 179 ~~~~~DvVIIDT 190 (443)
T 3dm5_A 179 KSKGVDIIIVDT 190 (443)
T ss_dssp HHTTCSEEEEEC
T ss_pred HhCCCCEEEEEC
Confidence 766778999998
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.93 E-value=0.00015 Score=75.22 Aligned_cols=174 Identities=13% Similarity=0.092 Sum_probs=96.9
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh---C---CCcEEEeccc
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA---N---NSTFFSVSSS 193 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~---~---~~~~~~~~~~ 193 (330)
.+.....++|.++..+.|.+.+... ....+-+.|+|++|+|||+||..+++.. . ...++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 3445567999999999999877321 1122568999999999999999988752 1 1123333332
Q ss_pred chhc------------c---------ccChhHHHHHHHHHHHHh--cCCeEEEEeCCcchhhHHHHHHHHhcCCCCCCcE
Q psy3808 194 DLVS------------K---------WLGESEKLVKTLFELARA--HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGI 250 (330)
Q Consensus 194 ~~~~------------~---------~~~~~~~~~~~~f~~a~~--~~~~ii~iDe~~~~~~~~~l~~~l~~~~~~~~~v 250 (330)
.... . ........+...+..... .++.+|++|+ ++... .+..+. .+.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd-~~~~~------~~~~~~---~~~ 258 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDD-VWDPW------VLKAFD---NQC 258 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEES-CCCHH------HHTTTC---SSC
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEec-CCCHH------HHHhhc---CCC
Confidence 2100 0 000011112222222222 2378999999 66432 223332 334
Q ss_pred EEEecCCCCCCcCHHHHhccccEEEecC-CCHHHHHHHHHHHhcCCCCCCChHhHHHHHHHcCCCCH
Q psy3808 251 LVLGATNIPWVLDAAIRRRFEKRIYIAL-PELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSG 316 (330)
Q Consensus 251 ~vi~ttn~~~~l~~~l~~Rf~~~i~~~~-p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~~~g~~~ 316 (330)
.||.||..+..... . ......+.+++ .+.++-.++|........... +.....|++..+|..-
T Consensus 259 ~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~-~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 259 QILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDL-PAEAHSIIKECKGSPL 322 (1249)
T ss_dssp EEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTC-CTHHHHHHHHTTTCHH
T ss_pred EEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhC-cHHHHHHHHHhCCCHH
Confidence 55556654432211 0 11234467775 888888888887775443222 2357788888888643
No 126
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.91 E-value=4.3e-05 Score=66.37 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=30.0
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
+.-++|.|||||||||+++.++..+ +..++.++++.+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~-~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET-QGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT-TTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEechHh
Confidence 3569999999999999999999988 335566777555
No 127
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.89 E-value=7.7e-06 Score=66.03 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
+.|+|.|||||||||+++.++..+ +.+++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT-KRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-CCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCCEEEC
Confidence 579999999999999999999999 7777644
No 128
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=0.00023 Score=51.56 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccC-----h------hhHHHHHHHHHHHHHHHHHHHHHh
Q psy3808 4 FDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITS-----A------EGKQSIREKCDEYLARAEKLKEYL 72 (330)
Q Consensus 4 ~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~-----~------~~~~~~~~~~~e~~~r~e~Lk~~l 72 (330)
.++|++++.+|+..|..|+.++|+.+|+++++.|.+.+.-.-.. + .+++.++....+..+|+..|....
T Consensus 19 h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~ 98 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGL 98 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999988665321 1 223344444555556666666554
Q ss_pred h
Q psy3808 73 K 73 (330)
Q Consensus 73 ~ 73 (330)
.
T Consensus 99 ~ 99 (116)
T 2dl1_A 99 A 99 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.85 E-value=3.4e-05 Score=62.38 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=55.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc--------chhccccCh-----hHHHHHHHHHHHHhcCCeEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS--------DLVSKWLGE-----SEKLVKTLFELARAHRPSIIF 223 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~f~~a~~~~~~ii~ 223 (330)
.-++++||||+|||+++..++..+ .+..++.+.+. .+.+. .|. .......++..+. ..+.+|+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~-~g~~~~~~~~~~~~~~~~~~~-~~~dvvi 81 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSH-SGNGVEAHVIERPEEMRKYIE-EDTRGVF 81 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC-----CEECEEESSGGGGGGGCC-TTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEec-CCCceeeEEECCHHHHHHHhc-CCCCEEE
Confidence 357899999999999987666654 23333333221 00000 000 0000111222111 2457999
Q ss_pred EeCCcch---hhHHHHHHHHhcCCCCCCcEEEEecC-C---CCCCcCHHHHhccccEEEec
Q psy3808 224 IDERIDR---GISNALFLLLSGVGNDMDGILVLGAT-N---IPWVLDAAIRRRFEKRIYIA 277 (330)
Q Consensus 224 iDe~~~~---~~~~~l~~~l~~~~~~~~~v~vi~tt-n---~~~~l~~~l~~Rf~~~i~~~ 277 (330)
||| +.. .....+..+.+. .-.+++.|.+ + +++...+.++++.+.+..+.
T Consensus 82 IDE-~Q~~~~~~~~~l~~l~~~----~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 82 IDE-VQFFNPSLFEVVKDLLDR----GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp ECC-GGGSCTTHHHHHHHHHHT----TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred EEC-cccCCHHHHHHHHHHHHC----CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 999 443 333333333332 1234443443 2 55666778888776665544
No 130
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.85 E-value=4.4e-05 Score=63.50 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=24.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~ 190 (330)
.-++++||+|+||||++..++..+ .+..++.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 358888999999999998888776 33344444
No 131
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.84 E-value=4.7e-05 Score=64.33 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.9
Q ss_pred CcceEEECCCCCchHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVA 179 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la 179 (330)
..-+.|.||+|+|||||++.++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3469999999999999999998
No 132
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=1.1e-05 Score=65.97 Aligned_cols=32 Identities=38% Similarity=0.495 Sum_probs=27.7
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
...++|.|||||||||+++.++..+ +.+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL-NVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc-CCCEEcc
Confidence 3579999999999999999999999 7777643
No 133
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.83 E-value=7.5e-05 Score=63.54 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
+..++|.|||||||||+++.++..+ +..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l-~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF-QGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT-TTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc-CCCcEEEecHHH
Confidence 3579999999999999999999998 445566676655
No 134
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.79 E-value=8e-05 Score=61.24 Aligned_cols=33 Identities=36% Similarity=0.715 Sum_probs=27.2
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
|+|.|||||||+|.|+.|+..+ +. ..++..++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~-g~--~~istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK-GF--VHISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-CC--EEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CC--eEEcHHHHH
Confidence 7899999999999999999998 54 456666554
No 135
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.79 E-value=6.7e-05 Score=67.07 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=46.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC---CCcEEEe-cccchh---------ccccChhHHHHHHHHHHHHhcCCeEEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN---NSTFFSV-SSSDLV---------SKWLGESEKLVKTLFELARAHRPSIIFID 225 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~---~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~f~~a~~~~~~ii~iD 225 (330)
..+++.||+||||||+.+++++.++ +..++.+ ++.++. ....+.........+..+....|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 3589999999999999999998772 2233322 111111 00111111123345566666899999999
Q ss_pred CCcchhhHHHHHHH
Q psy3808 226 ERIDRGISNALFLL 239 (330)
Q Consensus 226 e~~~~~~~~~l~~~ 239 (330)
|.-+......+...
T Consensus 204 Ep~d~e~~~~~~~~ 217 (356)
T 3jvv_A 204 EMRDLETIRLALTA 217 (356)
T ss_dssp CCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 94344443333333
No 136
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.78 E-value=4.2e-05 Score=72.91 Aligned_cols=98 Identities=26% Similarity=0.324 Sum_probs=55.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcccc----ChhHHHHHHHHHHH---------HhcCCeEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWL----GESEKLVKTLFELA---------RAHRPSIIF 223 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~a---------~~~~~~ii~ 223 (330)
+.++|+||||||||+++.+++..+ .+..+..+.++.-..... +.....++.++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998866 344555443322111100 00001122222100 011357999
Q ss_pred EeCCcchhhHHHHHHHHhcCCCCCCcEEEEecCCC
Q psy3808 224 IDERIDRGISNALFLLLSGVGNDMDGILVLGATNI 258 (330)
Q Consensus 224 iDe~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~ 258 (330)
||| ........+..++..+. ....++++|-.+.
T Consensus 285 IDE-asml~~~~~~~Ll~~~~-~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDE-VSMMGDALMLSLLAAVP-PGARVLLVGDTDQ 317 (574)
T ss_dssp ECC-GGGCCHHHHHHHHTTSC-TTCEEEEEECTTS
T ss_pred EcC-ccCCCHHHHHHHHHhCc-CCCEEEEEecccc
Confidence 999 66555555666665554 3356777776654
No 137
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.77 E-value=0.00016 Score=63.23 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++.-++|.||+|+||||++..+|..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34569999999999999999999876
No 138
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.76 E-value=6.7e-05 Score=67.39 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|++..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 358899999999999999999865
No 139
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.76 E-value=1.9e-05 Score=62.66 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=26.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
-|+|.|||||||||+++.++..+ +.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL-KYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH-CCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeeecCc
Confidence 48899999999999999999998 67765443
No 140
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.75 E-value=0.00022 Score=65.15 Aligned_cols=26 Identities=31% Similarity=0.178 Sum_probs=22.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++.-+++.||+|+||||++..+|..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999876
No 141
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.74 E-value=8.4e-05 Score=63.71 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++++++.+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458899999999999999999865
No 142
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.73 E-value=1.8e-05 Score=63.22 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=25.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.++|.|||||||||+++.++..+ +.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-DLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-TCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCEEc
Confidence 58999999999999999999999 676654
No 143
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.73 E-value=2.2e-05 Score=63.05 Aligned_cols=31 Identities=39% Similarity=0.693 Sum_probs=26.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
..|+|+|+|||||||+++.++..+ +.+++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS-GLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEH
Confidence 469999999999999999999998 6666543
No 144
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.72 E-value=9.8e-05 Score=65.83 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.++|+...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 358899999999999999999865
No 145
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.72 E-value=2.1e-05 Score=63.34 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=26.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.|+|.|+|||||||+++.++..+ +.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL-GVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH-TCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCCEEeC
Confidence 59999999999999999999999 6777643
No 146
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.72 E-value=2.7e-05 Score=61.97 Aligned_cols=30 Identities=37% Similarity=0.752 Sum_probs=25.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
..+.|.|||||||||+++.++..+ +.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l-~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL-NMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT-TCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEe
Confidence 469999999999999999999998 555543
No 147
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.70 E-value=0.00084 Score=63.19 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=48.5
Q ss_pred eEEEEeCCcchh-------hHHHHHHHHhcCCCCCCcEEEEecCCCCC--CcCHHHHhccccEEEecCCCHHHHHHHHH
Q psy3808 220 SIIFIDERIDRG-------ISNALFLLLSGVGNDMDGILVLGATNIPW--VLDAAIRRRFEKRIYIALPELNARLFMFR 289 (330)
Q Consensus 220 ~ii~iDe~~~~~-------~~~~l~~~l~~~~~~~~~v~vi~ttn~~~--~l~~~l~~Rf~~~i~~~~p~~~~r~~il~ 289 (330)
.+|+||| .... ....+..+.... +.-++.+|.+|.+|. .++..++.-|...|.+...+..+...|+.
T Consensus 345 ivvVIDE-~~~L~~~~~~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 345 IVVVVDE-FADMMMIVGKKVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEESC-CTTHHHHTCHHHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred EEEEEeC-HHHHhhhhhHHHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 5899999 5432 223333444332 235788888888886 78889999999999999999888877773
No 148
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.70 E-value=8.3e-05 Score=66.35 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=42.6
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcc----ccC------------hhHHHHHHHHHHHHhcCC
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSK----WLG------------ESEKLVKTLFELARAHRP 219 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~----~~~------------~~~~~~~~~f~~a~~~~~ 219 (330)
..-++|+||||+|||+|+..++..+ .+..++.++....... ..| ..+..+..+...++...|
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 3459999999999999999998765 2345555554321110 011 122333333334445678
Q ss_pred eEEEEeC
Q psy3808 220 SIIFIDE 226 (330)
Q Consensus 220 ~ii~iDe 226 (330)
.+|+||+
T Consensus 141 ~lIVIDs 147 (349)
T 2zr9_A 141 DIIVIDS 147 (349)
T ss_dssp SEEEEEC
T ss_pred CEEEEcC
Confidence 9999999
No 149
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.68 E-value=0.00028 Score=60.19 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=29.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLV 196 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~ 196 (330)
.-|+|.|+|||||||+++.++..+ .|.+++.++.+.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 358999999999999999999983 25666656665543
No 150
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.67 E-value=3.7e-05 Score=61.29 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=17.0
Q ss_pred cceEEECCCCCchHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKA 177 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~ 177 (330)
.-+.|.||+|||||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3588999999999999994
No 151
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.67 E-value=0.00014 Score=64.87 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|+...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999999865
No 152
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.67 E-value=0.00032 Score=58.10 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=23.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHh--CCCcEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA--NNSTFF 188 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~--~~~~~~ 188 (330)
.+++.|+||+||||++-.+|..+ .|..++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 59999999999999999999876 344443
No 153
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.66 E-value=6.5e-05 Score=64.24 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++|.||+||||||++++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 458999999999999999999876
No 154
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.66 E-value=0.0001 Score=65.64 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=43.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcc----------------ccChhHHHHHHHHHHHHhcCCe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSK----------------WLGESEKLVKTLFELARAHRPS 220 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~f~~a~~~~~~ 220 (330)
.-++|+||||||||+|+..++..+ .+..++.++....... .....+..+..+....+...+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 458999999999999999999875 2345555655432110 0111233333333344456789
Q ss_pred EEEEeC
Q psy3808 221 IIFIDE 226 (330)
Q Consensus 221 ii~iDe 226 (330)
+++||.
T Consensus 142 lvVIDS 147 (356)
T 3hr8_A 142 LIVVDS 147 (356)
T ss_dssp EEEEEC
T ss_pred eEEehH
Confidence 999998
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.66 E-value=3.1e-05 Score=65.93 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=27.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
-++|.|||||||||+|+.+|..+ +.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~-~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET-GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC-CCeEEeccH
Confidence 47899999999999999999999 677776544
No 156
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.66 E-value=3e-05 Score=61.51 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=27.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
..++|.|+|||||||+++.++..+ +.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l-g~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL-KLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH-TCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEC
Confidence 479999999999999999999999 7777653
No 157
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.66 E-value=0.00012 Score=61.12 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.+++.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999865
No 158
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.65 E-value=3.3e-05 Score=62.31 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=25.6
Q ss_pred cceEEECCCCCchHHHHHHHHHH-hCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE-ANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~-~~~~~~~~ 189 (330)
..|+|+|+|||||||+++.++.. + +.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~-g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELD-GFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST-TEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC-CCEEee
Confidence 46999999999999999999998 5 555554
No 159
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.65 E-value=3.1e-05 Score=62.72 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=26.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.-|+|.|+|||||||+++.++..+ +.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL-RLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CCeEecH
Confidence 468999999999999999999998 6666653
No 160
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.00012 Score=65.38 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|++..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 358899999999999999999875
No 161
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=97.65 E-value=0.00051 Score=46.31 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHH
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEY 71 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~ 71 (330)
++..-.+.++.|.++...|||+.|+.+|.++++.+.+.+..- .++..+..+.+...++.++.+..+..
T Consensus 8 ~~~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~-~d~~~r~kW~~~~~ei~~E~~~Vk~i 75 (78)
T 2rpa_A 8 SLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV-KDTHLRQKWQQVWQEINVEAKQVKDI 75 (78)
T ss_dssp SSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc-CCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999988666 46788889999999988888887765
No 162
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.65 E-value=0.00014 Score=65.30 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 358899999999999999999875
No 163
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.64 E-value=3.9e-05 Score=62.78 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=26.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
..|+|.|+|||||||+++.++..+ +.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l-~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL-GIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCcEEeh
Confidence 359999999999999999999998 6666543
No 164
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.64 E-value=2.7e-05 Score=63.07 Aligned_cols=36 Identities=39% Similarity=0.501 Sum_probs=29.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
..++|.|||||||||+++.++... +...+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccch
Confidence 468999999999999999999975 566666666544
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.64 E-value=0.00011 Score=61.07 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999999999854
No 166
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.64 E-value=0.00015 Score=64.70 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|++..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 358899999999999999999865
No 167
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.63 E-value=0.00011 Score=60.85 Aligned_cols=35 Identities=34% Similarity=0.583 Sum_probs=28.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 196 (330)
+-|+|.|||||||+|.|+.|+..+ + +..++..+++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~-g--~~hIstGdll 64 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF-H--FNHLSSGDLL 64 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH-C--CEEECHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-C--CceEcHHHHH
Confidence 458889999999999999999998 5 4456766654
No 168
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.63 E-value=3e-05 Score=61.58 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=23.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
-|+|.|||||||||+++.+ ..+ |.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER-GAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT-TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHC-CCcEEE
Confidence 4889999999999999999 777 666654
No 169
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.61 E-value=3.6e-05 Score=61.19 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=25.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.|+|.|+|||||||+++.++..+ +.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL-GYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH-TCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCcEEc
Confidence 58999999999999999999998 666654
No 170
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.61 E-value=0.00014 Score=61.14 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||++.++..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999865
No 171
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.60 E-value=5.7e-05 Score=60.23 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=25.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
..++|.||||+||||+++.++..+ |..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL-HAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH-TCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh-CcEEEe
Confidence 468999999999999999999988 665554
No 172
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.59 E-value=4.6e-05 Score=62.38 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=26.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.-|+|.|+|||||||+++.|+..+ +..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC-GYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCEEEe
Confidence 469999999999999999999998 666654
No 173
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.58 E-value=0.00019 Score=64.12 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||+++++...
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 458899999999999999999865
No 174
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.58 E-value=0.00015 Score=65.02 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=43.2
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhccc----------------cChhHHHHHHHHHHHHhcCC
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKW----------------LGESEKLVKTLFELARAHRP 219 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~f~~a~~~~~ 219 (330)
..-++|+||||+|||+||..++..+ .+.+++.++.......+ ....+..+..+....+...+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI 153 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence 3468999999999999999998765 34456666554321110 01123333333334445678
Q ss_pred eEEEEeC
Q psy3808 220 SIIFIDE 226 (330)
Q Consensus 220 ~ii~iDe 226 (330)
.+|+||.
T Consensus 154 ~lVVIDs 160 (366)
T 1xp8_A 154 DVVVVDS 160 (366)
T ss_dssp SEEEEEC
T ss_pred CEEEEeC
Confidence 9999998
No 175
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.58 E-value=0.00014 Score=62.53 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++++++.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999999865
No 176
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.57 E-value=4.4e-05 Score=61.97 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=26.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.-|+|.|+|||||||+++.++..+ +.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY-GYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcH
Confidence 469999999999999999999998 6665543
No 177
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.57 E-value=4.4e-05 Score=61.86 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=25.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.-|+|.|+|||||||+++.++..+ +.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY-GYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeEEe
Confidence 468999999999999999999998 665543
No 178
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.56 E-value=0.00013 Score=61.55 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||.+.+++.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999876
No 179
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.56 E-value=5e-05 Score=63.08 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=26.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
..|+|.|+|||||||+++.++..+ +.+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~ 34 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF-HAAHLA 34 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-CCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CceEEe
Confidence 469999999999999999999999 666554
No 180
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.56 E-value=0.00017 Score=59.51 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=27.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.-++|+||||+|||+++..++. ..+..++.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECC
Confidence 4589999999999999999998 435566666554
No 181
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.55 E-value=0.00052 Score=55.48 Aligned_cols=109 Identities=14% Similarity=0.080 Sum_probs=62.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEeccc---------chhccc-----------c--Ch----hHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSS---------DLVSKW-----------L--GE----SEKLVKTL 210 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~---------~~~~~~-----------~--~~----~~~~~~~~ 210 (330)
..+++|+++|.||||+|-+++-.. .|..+..+... .+.... . .. ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 369999999999999999998776 34444444211 122221 0 00 12233344
Q ss_pred HHHHHh----cCCeEEEEeCCcc------hhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEE
Q psy3808 211 FELARA----HRPSIIFIDERID------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRI 274 (330)
Q Consensus 211 f~~a~~----~~~~ii~iDe~~~------~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i 274 (330)
+..++. ....+|++|| +. -...+.++.++.. ...+.-||.|+|.+ ++.|...-|.+-
T Consensus 109 l~~a~~~l~~~~yDlvILDE-i~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a---p~~l~e~AD~VT 175 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDE-LTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC---HRDILDLADTVS 175 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEET-HHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC---CHHHHHHCSEEE
T ss_pred HHHHHHHHhcCCCCEEEEeC-CCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC---cHHHHHhCccee
Confidence 444443 4578999999 42 2334455555553 33556667688753 566666555443
No 182
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.55 E-value=4.4e-05 Score=63.19 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.|+|.|||||||||+++.++..+ +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeH
Confidence 47899999999999999999998 6665543
No 183
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.55 E-value=0.00026 Score=60.23 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||.+.+++.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999875
No 184
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.55 E-value=4.7e-05 Score=63.00 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=25.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.|+|.|||||||||+++.++..+ +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeH
Confidence 37899999999999999999998 6666543
No 185
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.54 E-value=3.3e-05 Score=67.76 Aligned_cols=34 Identities=38% Similarity=0.562 Sum_probs=29.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
..++|.||+|||||+++..+|..+ +..++.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-PCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccch
Confidence 468999999999999999999999 6677766544
No 186
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.54 E-value=0.00023 Score=63.60 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=27.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
.-++|+||||+|||+||..++..+ .+.+++.++.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 469999999999999999998765 3445666665
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.53 E-value=0.00019 Score=60.21 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.-++|+||||+|||+|+..++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999985
No 188
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.53 E-value=0.00036 Score=59.60 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.+++.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 458899999999999999999876
No 189
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.53 E-value=7.5e-05 Score=61.06 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=25.6
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
+.-+.|.||+||||||+++.++..+ |..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~-g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET-GLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-CCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh-CCeEE
Confidence 3469999999999999999999998 65544
No 190
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.53 E-value=5.6e-05 Score=59.79 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.|+|.|+|||||||+++.++..+ +.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL-NIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH-TCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEE
Confidence 48899999999999999999998 666654
No 191
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.53 E-value=0.00045 Score=60.31 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||++.|++.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 33569999999999999999999866
No 192
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.52 E-value=6.1e-05 Score=60.66 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=24.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
..++|.|+|||||||+++.++..+ +.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l-~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL-GFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH-TCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeEe
Confidence 358999999999999999999988 65544
No 193
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.51 E-value=0.00014 Score=65.32 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|+...
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 358899999999999999999865
No 194
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.51 E-value=4.4e-05 Score=61.67 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=22.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-|+|.|||||||||+++.++..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988
No 195
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.51 E-value=4.9e-05 Score=67.33 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 128 AGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 128 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
+..+.+.+.+...+...+. .+. ..+++|+||||+|||+++++++..+ +.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~-------~g~-~~~i~l~G~~G~GKTTl~~~la~~l-~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE-------DNY-RVCVILVGSPGSGKSTIAEELCQII-NEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT-------TCS-CEEEEEECCTTSSHHHHHHHHHHHH-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc-------cCC-eeEEEEECCCCCcHHHHHHHHHHHh-CCCeee
Confidence 4455666666665543321 111 1369999999999999999999998 566643
No 196
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.50 E-value=5.9e-05 Score=61.38 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=25.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.-|+|.|+|||||||+++.++..+ +.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY-GFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-TCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEc
Confidence 469999999999999999999998 655543
No 197
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.50 E-value=5.2e-05 Score=62.89 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=26.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
..|+|.|+|||||||+++.++..+ +.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY-GLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CceEEeh
Confidence 368999999999999999999999 6666543
No 198
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.50 E-value=6.2e-05 Score=63.66 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.2
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
+..|+|.|||||||||+++.++..+ +.+++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is 59 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLS 59 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCeEEe
Confidence 3579999999999999999999988 555543
No 199
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.49 E-value=0.00023 Score=59.93 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=25.3
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
.++++||+|+|||.++.+++... +..++.+.+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~-~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL-STPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS-CSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc-CCCEEEEeC
Confidence 59999999999999999998887 444444443
No 200
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.49 E-value=0.00015 Score=64.66 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|++..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999999865
No 201
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.49 E-value=0.0019 Score=60.23 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=45.0
Q ss_pred eEEEEeCCcchhhH---HHHHHHHhcCC--CCCCcEEEEecCCCCC--CcCHHHHhccccEEEecCCCHHHHHHHHH
Q psy3808 220 SIIFIDERIDRGIS---NALFLLLSGVG--NDMDGILVLGATNIPW--VLDAAIRRRFEKRIYIALPELNARLFMFR 289 (330)
Q Consensus 220 ~ii~iDe~~~~~~~---~~l~~~l~~~~--~~~~~v~vi~ttn~~~--~l~~~l~~Rf~~~i~~~~p~~~~r~~il~ 289 (330)
-+|+||| ...... ..+...+..+. ...-++.+|.+|.+|. .++..++.-|...|.|...+..+...|+.
T Consensus 299 ivlvIDE-~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 299 IVVLVDE-FADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEET-HHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEEeC-HHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 3889999 432221 11222222111 1123677777887775 58888888999999999999998888775
No 202
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.48 E-value=5.7e-05 Score=60.34 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=25.1
Q ss_pred cceEEECCCCCchHHHHHHHHH-HhCCCcEEEecccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVAT-EANNSTFFSVSSSD 194 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~-~~~~~~~~~~~~~~ 194 (330)
.-|+|.|||||||||+++.++. .+ +. ..++...
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~-~~--~~i~~d~ 36 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNP-GF--YNINRDD 36 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-TE--EEECHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcC-Cc--EEecHHH
Confidence 4589999999999999999998 44 43 3444443
No 203
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.47 E-value=6.2e-05 Score=60.39 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
.-|+|.|+|||||||+++.++..+ +.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l-~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL-PGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS-TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCCEE
Confidence 468999999999999999999998 66666
No 204
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.46 E-value=0.00083 Score=57.62 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=34.5
Q ss_pred hcCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEe
Q psy3808 216 AHRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYI 276 (330)
Q Consensus 216 ~~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~ 276 (330)
...|.+|++|| .+|......+...+..+.......+|+ +|.. .....++++++.+
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii-vtHd-----~~~~~~~d~v~~l 229 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL-ITQQ-----LSLAERAHHILFL 229 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE-ECSC-----HHHHTTCSEEEEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE-EeCC-----HHHHHhCCEEEEE
Confidence 36788999999 677888888888888765432334444 4432 2233345555554
No 205
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.46 E-value=6.6e-05 Score=62.70 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=26.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
..|+|.|||||||||+++.++..+ +.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF-ELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS-SSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCeEEe
Confidence 469999999999999999999998 666554
No 206
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.46 E-value=0.00023 Score=63.26 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|++..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 358899999999999999999875
No 207
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.46 E-value=6.6e-05 Score=60.69 Aligned_cols=30 Identities=20% Similarity=0.425 Sum_probs=25.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.-|+|.|+|||||||+++.++..+ +.+++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF-GWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-CCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCeEee
Confidence 468999999999999999999998 665554
No 208
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.45 E-value=8.6e-05 Score=60.72 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=26.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.-|+|.|+|||||||+++.++..+ +.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS-SCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CceEEeH
Confidence 458999999999999999999998 6655543
No 209
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.45 E-value=8.9e-05 Score=62.21 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=26.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
..|+|.|+|||||||+++.|+..+ +.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~ 46 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF-CVCHLA 46 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-TCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCceec
Confidence 469999999999999999999999 666554
No 210
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.44 E-value=0.00038 Score=62.10 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|+||||||||+|++.++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999876
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00064 Score=57.07 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=24.5
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEec
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVS 191 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~ 191 (330)
..-++|+||||+|||+++..++... .+..++.++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999988887654 233444443
No 212
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.42 E-value=9.3e-05 Score=59.77 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=26.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccch
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDL 195 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~ 195 (330)
-|+|.|+|||||||+++.++..++ +.++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 488999999999999999999883 123444544433
No 213
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.41 E-value=0.00017 Score=63.90 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=41.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC-CCcEEEeccc-chh-----c--cccChhHHHHHHHHHHHHhcCCeEEEEeC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSS-DLV-----S--KWLGESEKLVKTLFELARAHRPSIIFIDE 226 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~-~~~-----~--~~~~~~~~~~~~~f~~a~~~~~~ii~iDe 226 (330)
..++|.||+|+|||||+++++..+. ....+.+... ++. . .+........+..+..+....|.+|++||
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 4699999999999999999999872 1223333321 110 0 01100112233444555567899999999
No 214
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.41 E-value=0.0011 Score=60.68 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=27.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.-|+|.|+|||||||+++.++..+ +. ..++.+.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~-~~--~~i~~D~~ 292 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA-GY--VHVNRDTL 292 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG-TC--EECCGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc-Cc--EEEccchH
Confidence 458899999999999999999987 54 44555554
No 215
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.40 E-value=8.5e-05 Score=61.40 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=25.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.|+|.|||||||||+++.++..+ +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeH
Confidence 48899999999999999999998 6666544
No 216
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.39 E-value=0.00031 Score=61.12 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=29.4
Q ss_pred CCCCCcceEEECCCCCchHHHHHHHHHHh--C--CCcEEEecccc
Q psy3808 154 KRVPWKGILLFGPPGTGKSYLAKAVATEA--N--NSTFFSVSSSD 194 (330)
Q Consensus 154 ~~~~~~~ill~GppGtGKT~la~~la~~~--~--~~~~~~~~~~~ 194 (330)
++.|...++++||||+|||+|+..++... . +..++.++..+
T Consensus 24 GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 24 GGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 45554468999999999999988887665 1 45566666643
No 217
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.39 E-value=0.00031 Score=63.26 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++|.||+||||||++++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999999976
No 218
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.39 E-value=6.4e-05 Score=62.54 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=25.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
..|+|.|||||||||+++.++..+ +.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l-~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY-QLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH-CCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCcee
Confidence 469999999999999999999999 55443
No 219
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.39 E-value=0.00051 Score=73.33 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=47.4
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhcccc----------------ChhHHHHHHHHHHHHhcC
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVSKWL----------------GESEKLVKTLFELARAHR 218 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~f~~a~~~~ 218 (330)
+.+.++|+||||||||+||.+++.+. .|.+...++..+...... ...+...+......+...
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~ 1159 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1159 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCC
Confidence 44679999999999999999999765 355666677665422111 112233344445555677
Q ss_pred CeEEEEeC
Q psy3808 219 PSIIFIDE 226 (330)
Q Consensus 219 ~~ii~iDe 226 (330)
|.+|+||+
T Consensus 1160 ~dlvVIDs 1167 (2050)
T 3cmu_A 1160 VDVIVVDS 1167 (2050)
T ss_dssp CSEEEESC
T ss_pred CCEEEECC
Confidence 99999999
No 220
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.38 E-value=0.00013 Score=58.31 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=29.9
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccch
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDL 195 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~ 195 (330)
+..+.|.|++||||||+++.++..+ .|.+++.++...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 3468899999999999999999986 3567776665433
No 221
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.36 E-value=0.0012 Score=55.51 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||++.+++.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999875
No 222
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.36 E-value=0.00014 Score=60.57 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=25.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
..+.|.||+||||||+++.++..+ +.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~-g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL-QWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-TCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCCcc
Confidence 368999999999999999999988 65554
No 223
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.35 E-value=0.00014 Score=61.57 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=24.8
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcE
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTF 187 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~ 187 (330)
+..++|.|||||||||+++.|+..+ |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l-g~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF-GLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-CCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCeE
Confidence 3579999999999999999999888 5443
No 224
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.35 E-value=0.0011 Score=56.47 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.|++.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999999865
No 225
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.33 E-value=0.00015 Score=59.21 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=27.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.-|.|.|++||||||+++.++..+.|.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 468999999999999999999988445666543
No 226
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.33 E-value=0.00015 Score=60.33 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=24.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.|+|.|||||||||+++.++..+ +.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l-g~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY-SLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEc
Confidence 37899999999999999999998 655543
No 227
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.32 E-value=0.00054 Score=60.94 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=26.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--------CCCcEEEecccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--------NNSTFFSVSSSD 194 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--------~~~~~~~~~~~~ 194 (330)
.-++|+||||+|||+++..++... .+..++.++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 358999999999999999999873 134555555543
No 228
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.32 E-value=0.00067 Score=57.13 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||.+.++..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999865
No 229
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.32 E-value=0.00015 Score=59.12 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=24.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
.|+|.|++||||||+++.++..+ +..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l-~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL-GYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-CCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhc-CCcEE
Confidence 47899999999999999999999 55554
No 230
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.32 E-value=0.00059 Score=57.76 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||.+.+++.+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458899999999999999999876
No 231
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.31 E-value=0.00012 Score=59.94 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=24.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.|.|.|++||||||+++.++. + |.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L-GAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T-TCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C-CCEEEEc
Confidence 488999999999999999999 7 6666543
No 232
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.30 E-value=0.00089 Score=57.15 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++++++.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999876
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.29 E-value=0.0037 Score=54.27 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=26.6
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh---CCCcEEEecc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA---NNSTFFSVSS 192 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~---~~~~~~~~~~ 192 (330)
+.-++|.||+|+||||++..+|..+ .|..+..++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4579999999999999999999876 2434444443
No 234
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.29 E-value=0.00097 Score=56.59 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||.+.+++.+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999876
No 235
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.28 E-value=0.00047 Score=62.52 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=19.6
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.-++|+||||||||+|++.++..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 45899999999999999977643
No 236
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.28 E-value=0.00017 Score=58.19 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHhC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~ 183 (330)
-++|.||+|+||||+++.++...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998663
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.28 E-value=0.00017 Score=58.11 Aligned_cols=25 Identities=44% Similarity=0.626 Sum_probs=22.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~ 183 (330)
+.|+|+||+|+|||||++.+....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4599999999999999999998863
No 238
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.28 E-value=0.00016 Score=59.07 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=28.2
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccch
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDL 195 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~ 195 (330)
+.-+.|.||+||||||+++.++..+. |...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 35688999999999999999999882 333334555444
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00017 Score=57.93 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999876
No 240
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.27 E-value=0.0011 Score=56.11 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.++..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999875
No 241
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.26 E-value=0.00053 Score=65.89 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999988877655
No 242
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.26 E-value=0.00023 Score=60.28 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=27.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
..+.|.|++||||||+++.++..+ +.+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l-g~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL-GYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH-TCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc-CCcEEeC
Confidence 479999999999999999999999 6776653
No 243
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00018 Score=58.94 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.1
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.+.|.||+||||||+++.++. + |.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l-g~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L-GVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T-TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-CCcccc
Confidence 478999999999999999998 6 677654
No 244
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.25 E-value=0.0012 Score=59.67 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||.+.|+...
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999854
No 245
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.25 E-value=0.0018 Score=54.32 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=24.7
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh---CCCcEEEecc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA---NNSTFFSVSS 192 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~---~~~~~~~~~~ 192 (330)
..-++|+|+||+|||++|..++... .+.+++.++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3458999999999999998876542 2445554443
No 246
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.24 E-value=0.00019 Score=58.31 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
-|.|+|++||||||+++.++..+ |.+++ +++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l-g~~vi--d~D~~ 46 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY-GAHVV--NVDRI 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-CCEEE--ECcHH
Confidence 48899999999999999999988 67665 44444
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.23 E-value=0.00044 Score=61.05 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--C------CCcEEEecccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--N------NSTFFSVSSSD 194 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~------~~~~~~~~~~~ 194 (330)
.-++|+||||+|||+++..++... + +..++.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 458999999999999999999875 1 34555565543
No 248
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.23 E-value=0.00026 Score=57.15 Aligned_cols=31 Identities=23% Similarity=0.085 Sum_probs=25.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHh--CCCcEEEe
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA--NNSTFFSV 190 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~--~~~~~~~~ 190 (330)
-|.|.|+|||||||+++.++..+ .|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999999999987 25666654
No 249
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.22 E-value=0.00026 Score=59.17 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=25.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
..+.|.|||||||||+++.++..+ +.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l-g~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL-GARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-TCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCCcc
Confidence 469999999999999999999998 65554
No 250
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.22 E-value=0.00032 Score=56.44 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=28.1
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccch
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDL 195 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~ 195 (330)
+.-++|.|+|||||||+++.++..+. +..+..++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 35689999999999999999999872 333444554433
No 251
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.21 E-value=0.00028 Score=61.30 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=27.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
.-++|.||+|||||+|+..+|..+ +..++..+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL-PVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhC-CCcEEeccc
Confidence 468899999999999999999998 566666544
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.20 E-value=0.0002 Score=58.62 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.7
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhC
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~ 183 (330)
++.-++|.||||+||||+++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345699999999999999999999873
No 253
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.20 E-value=0.002 Score=56.74 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=23.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++.-+.|.||+|+||||+++.++..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999876
No 254
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.20 E-value=0.00026 Score=57.87 Aligned_cols=29 Identities=31% Similarity=0.490 Sum_probs=25.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.+.|.|++||||||+++.++..+ +.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l-g~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL-GVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-CCceec
Confidence 58899999999999999999998 666664
No 255
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=97.19 E-value=0.0024 Score=43.88 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHhhhh
Q psy3808 3 TFDKGINIAIKATEADKN---KNYEEALKLYTHSVQYFLHALKYE 44 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~---~~~~~al~~y~~a~q~~~~~~~~~ 44 (330)
..++|++++.+|+..|.. |+.++|+.+|+++++.+.+.+.-.
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~ 56 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVI 56 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCc
Confidence 367999999999999999 999999999999999999988644
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.18 E-value=0.00022 Score=62.76 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=28.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.-|+|.||+|||||+|+..||..+ +..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC-CCcEEccccc
Confidence 368999999999999999999999 5677765543
No 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.15 E-value=0.0043 Score=62.47 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=33.8
Q ss_pred cchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHH
Q psy3808 128 AGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 128 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~ 180 (330)
+|.+..++.|.+.+... .+.+-+.|+||+|+|||+||+.+++
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 89999888888877421 1135689999999999999999985
No 258
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.15 E-value=0.0012 Score=54.20 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=64.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccchhcccc---ChhHHHHHHHHHHHHhc-CC--------eEEEEeC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWL---GESEKLVKTLFELARAH-RP--------SIIFIDE 226 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~a~~~-~~--------~ii~iDe 226 (330)
-.|-|+|..||||||+++.++. + |.+++. ++.+..... +..-..+...|...... .. .+||=|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~-g~~vid--aD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-R-GASLVD--TDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-T-TCEEEE--HHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCcEEE--CcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 3689999999999999999987 6 777764 433322211 11112222222111000 00 0111110
Q ss_pred --------CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcC-HHHHhccccEEEecCCCHHHHHHHHHH
Q psy3808 227 --------RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLD-AAIRRRFEKRIYIALPELNARLFMFRH 290 (330)
Q Consensus 227 --------~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~-~~l~~Rf~~~i~~~~p~~~~r~~il~~ 290 (330)
.++..+...+...+... ...++|+- .|-.+. ..+...|+.++++..|......++.++
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~~~---~~~~vv~d---~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~R 152 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREARDA---QGPYVIFV---VPLLVESRNWKARCDRVLVVDCPVDTQIARVMQR 152 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CSSSEEEE---CTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc---CCCEEEEE---EecccccCCccccCCeEEEEECCHHHHHHHHHhc
Confidence 11223333444444332 12344442 244455 667778999999999887777777765
No 259
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.14 E-value=0.00085 Score=70.78 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=44.3
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhc----cccC------------hhHHHHHHHHHHHHhcC
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVS----KWLG------------ESEKLVKTLFELARAHR 218 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~----~~~~------------~~~~~~~~~f~~a~~~~ 218 (330)
+...++|+||||+|||+||..+|..+ .+.++..++...... ...| ..+.....+-...+...
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~ 810 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 810 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccC
Confidence 44569999999999999999999876 334566666543321 1111 11222222222334578
Q ss_pred CeEEEEeC
Q psy3808 219 PSIIFIDE 226 (330)
Q Consensus 219 ~~ii~iDe 226 (330)
|.+|+||.
T Consensus 811 ~~lVVIDs 818 (1706)
T 3cmw_A 811 VDVIVVDS 818 (1706)
T ss_dssp CSEEEESC
T ss_pred CCEEEEec
Confidence 99999999
No 260
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.13 E-value=0.00044 Score=58.71 Aligned_cols=29 Identities=38% Similarity=0.503 Sum_probs=25.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
..+.|.||+||||||+++.++..+ |..++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L-g~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL-NWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT-TCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc-CCCcC
Confidence 468999999999999999999998 65544
No 261
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.13 E-value=0.00034 Score=57.61 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=29.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC---CCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN---NSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~---~~~~~~~~~~~~ 195 (330)
.-++|.|+|||||||+++.++..++ |.+++.++...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4688999999999999999999873 344666765444
No 262
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.13 E-value=0.00026 Score=58.08 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=22.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-|+|.|+|||||||+++.++..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999988
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.11 E-value=0.0006 Score=56.00 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~ 183 (330)
.-+.|.||+|||||||++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999883
No 264
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.11 E-value=0.00034 Score=60.85 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
-++|.||+|||||+|+..+|..+ +..++..+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT-TEEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhC-ccceeecCcc
Confidence 58899999999999999999998 5566555443
No 265
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.10 E-value=0.00044 Score=58.62 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=29.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCc--------EEEecccchhc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNST--------FFSVSSSDLVS 197 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~--------~~~~~~~~~~~ 197 (330)
.-|.|.|++||||||+++.|+..+ +.+ +..++.+++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l-g~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL-GQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh-hhhcccccCCceEEEecCcccc
Confidence 458999999999999999999988 554 33566666543
No 266
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.09 E-value=0.00027 Score=58.14 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.5
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+.-+.|.||+|+||||+++.++..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999987
No 267
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.09 E-value=0.0016 Score=61.37 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||+++|++.+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999865
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.06 E-value=0.00033 Score=57.13 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=22.2
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++.+.|.||+|+|||||++.+++.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999999876
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.05 E-value=0.0003 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+||||||+++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 270
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.04 E-value=0.00036 Score=56.90 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+||||||+++.++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999999986
No 271
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.04 E-value=0.00041 Score=61.25 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.6
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
-|+|.||+|||||++|..|+..+ +..++..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l-~~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF-NGEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TEEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHc-CCceecccc
Confidence 58999999999999999999998 555555443
No 272
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.04 E-value=0.00037 Score=56.44 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=26.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHhCCCcEEEecc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~ 192 (330)
.++++|.||+|+|||+||..++... . .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g-~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG-H-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT-C-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC-C-eEEecch
Confidence 3579999999999999999999876 3 5554443
No 273
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.03 E-value=0.002 Score=64.34 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=19.5
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
-++|.||.|+||||+.+.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 4899999999999999998753
No 274
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.03 E-value=0.0053 Score=58.60 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++.+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999875
No 275
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.02 E-value=0.0036 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=22.9
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++.-+++.||+|+||||++..+|..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999876
No 276
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.02 E-value=0.0004 Score=56.90 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=24.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFF 188 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~ 188 (330)
.-+.|.||+||||||+++.++..+.+.+++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 358899999999999999999876333333
No 277
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.01 E-value=0.0036 Score=57.30 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=26.5
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
+..++|.|+||+||||++..+|..+ .|..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3579999999999999999999876 1233444444
No 278
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=0.003 Score=60.53 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++.+
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3469999999999999999999876
No 279
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.01 E-value=0.00038 Score=56.08 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
+-+.|.||+|+||||+++.++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999876
No 280
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.00 E-value=0.011 Score=55.01 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=25.9
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
++.|+|.|+||+||||++..++..+ .|..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4579999999999999999999766 2344444444
No 281
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.00 E-value=0.0005 Score=56.82 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=25.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~ 190 (330)
.-|.|.|++||||||+++.++. + |.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-L-GINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-T-TCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-CCEEEEc
Confidence 3589999999999999999998 6 6666543
No 282
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.00 E-value=0.00039 Score=57.07 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=22.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-|+|.|+|||||||+++.++..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999987
No 283
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.99 E-value=0.0038 Score=59.68 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.3
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++.+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3469999999999999999999876
No 284
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.99 E-value=0.0018 Score=61.09 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=51.6
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccch----hc------------------cc----cC--hhHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDL----VS------------------KW----LG--ESEKLV 207 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~----~~------------------~~----~~--~~~~~~ 207 (330)
...++|.||||+|||+|++.++... .|..++.++..+. .. .+ +. ......
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q 360 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL 360 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHH
Confidence 3468999999999999999999876 2333433333211 00 00 00 123344
Q ss_pred HHHHHHHHhcCCeEEEEeC--Ccchh-----hHHHHHHHHhcCC
Q psy3808 208 KTLFELARAHRPSIIFIDE--RIDRG-----ISNALFLLLSGVG 244 (330)
Q Consensus 208 ~~~f~~a~~~~~~ii~iDe--~~~~~-----~~~~l~~~l~~~~ 244 (330)
+.+...+....|.+|++|- .+|.. ....+..++..+.
T Consensus 361 ~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 361 QIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH
Confidence 5556666678899999996 22333 4555555555443
No 285
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.98 E-value=0.00041 Score=56.47 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=24.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
..|.|.|++||||||+++.++.. |.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~--g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW--GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT--TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCEEEc
Confidence 46999999999999999999986 566654
No 286
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.98 E-value=0.00062 Score=58.79 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=24.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
.-|.|.|++||||||+++.++ .+ |.+++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~l-g~~~id 104 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NL-GAYIID 104 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HH-TCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC-CCcEEe
Confidence 459999999999999999999 56 666554
No 287
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.97 E-value=0.0024 Score=61.00 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.+++.+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 468999999999999999999876
No 288
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.95 E-value=0.00055 Score=55.66 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.5
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++-+.|.||+|+|||||++.|+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999886
No 289
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.95 E-value=0.00056 Score=56.50 Aligned_cols=30 Identities=40% Similarity=0.538 Sum_probs=26.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
..+.|.|++|||||++++.++..+ |.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~-g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL-SMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT-TCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCceec
Confidence 368999999999999999999998 666654
No 290
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.95 E-value=0.00045 Score=56.79 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=22.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-|+|.|+|||||||+++.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999986
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.95 E-value=0.00071 Score=56.73 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=25.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
..+.|.|++||||||+++.++..+ |.+++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l-g~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF-GFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH-CCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCceec
Confidence 468999999999999999999998 666553
No 292
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.95 E-value=0.00036 Score=60.76 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=25.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
.-|+|.|+|||||||+++.++..+.+. ..++.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~ 36 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDD 36 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccH
Confidence 458999999999999999999864243 3444443
No 293
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.94 E-value=0.00045 Score=55.93 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=23.3
Q ss_pred eEEECCCCCchHHHHHHHHHHhC--CCcEEE
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEAN--NSTFFS 189 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~--~~~~~~ 189 (330)
|.|.|++||||||+++.++..+. |.+++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 78999999999999999999872 345543
No 294
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.93 E-value=0.0014 Score=63.39 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHH-HHHHHh-CCCcEEEecc
Q psy3808 129 GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAK-AVATEA-NNSTFFSVSS 192 (330)
Q Consensus 129 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~-~la~~~-~~~~~~~~~~ 192 (330)
-.+.+++.+..++.. ..-.|++||||||||+++- .++..+ .+..+..+.+
T Consensus 190 LN~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CCHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 366777777765521 0147899999999996544 444333 3444544444
No 295
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.92 E-value=0.0023 Score=52.15 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=26.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
.-+.|.||+||||||+++.++..+ .+..++..+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 458999999999999999999876 2344544433
No 296
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.92 E-value=0.00053 Score=56.31 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=22.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+||||||+++.++..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999987
No 297
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.91 E-value=0.0006 Score=61.42 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=26.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCCcEEEec
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~~~~~~~ 191 (330)
.-|+|.||+|||||+|+..++..+ +..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~-~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH-TEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHC-CCeEeecC
Confidence 458899999999999999999998 45565543
No 298
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.89 E-value=0.0012 Score=57.64 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.5
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+.-+.|.||+|+||||+++.+|..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999986
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.89 E-value=0.0067 Score=52.65 Aligned_cols=69 Identities=22% Similarity=0.136 Sum_probs=41.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecccchhc-------c---------cc----ChhHHHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSSSDLVS-------K---------WL----GESEKLVKTLFELAR 215 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~-------~---------~~----~~~~~~~~~~f~~a~ 215 (330)
+.-+++.|++|+||||++..+|..+ .+..+..++...... . +. ......+......++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568889999999999999999876 233444343321100 0 00 112223344555555
Q ss_pred hcCCeEEEEeC
Q psy3808 216 AHRPSIIFIDE 226 (330)
Q Consensus 216 ~~~~~ii~iDe 226 (330)
.....+|+||-
T Consensus 178 ~~~~D~ViIDT 188 (297)
T 1j8m_F 178 SEKMEIIIVDT 188 (297)
T ss_dssp HTTCSEEEEEC
T ss_pred hCCCCEEEEeC
Confidence 45667999998
No 300
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.89 E-value=0.004 Score=56.72 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=34.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcccCCcccccCCCCCCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 121 NVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 121 ~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...++++.-.......+...+. .+..-++|.||+|+||||++++++..+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 4566677655555555555431 122358999999999999999999987
No 301
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.88 E-value=0.0076 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++..+.+.|++|+||||++..+|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568888999999999999999876
No 302
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.85 E-value=0.0011 Score=62.15 Aligned_cols=68 Identities=22% Similarity=0.411 Sum_probs=40.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC-CCcEEEeccc-chhc---cc--------cChhHHHHHHHHHHHHhcCCeEEEEe
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN-NSTFFSVSSS-DLVS---KW--------LGESEKLVKTLFELARAHRPSIIFID 225 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~-~~~~~~~~~~-~~~~---~~--------~~~~~~~~~~~f~~a~~~~~~ii~iD 225 (330)
..++|.||+||||||++++++..++ ....+.+... ++.. .+ .+.....+..+...+..+.|.+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999999872 1233433221 1110 00 00000112333444455789999999
Q ss_pred C
Q psy3808 226 E 226 (330)
Q Consensus 226 e 226 (330)
|
T Consensus 341 E 341 (511)
T 2oap_1 341 E 341 (511)
T ss_dssp C
T ss_pred C
Confidence 9
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.84 E-value=0.0089 Score=54.73 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=44.4
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--C-CCcEEEecccchhcc----------------ccC----hhHHHHHHHHHH
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--N-NSTFFSVSSSDLVSK----------------WLG----ESEKLVKTLFEL 213 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~-~~~~~~~~~~~~~~~----------------~~~----~~~~~~~~~f~~ 213 (330)
+++.+++.|++|+||||++..+|..+ . |..+..++++..... +.. .....+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 44679999999999999999999877 2 555555555421110 000 112233445555
Q ss_pred HHhcCCeEEEEeC
Q psy3808 214 ARAHRPSIIFIDE 226 (330)
Q Consensus 214 a~~~~~~ii~iDe 226 (330)
+......+++||-
T Consensus 179 ~~~~~~D~VIIDT 191 (433)
T 2xxa_A 179 AKLKFYDVLLVDT 191 (433)
T ss_dssp HHHTTCSEEEEEC
T ss_pred HHhCCCCEEEEEC
Confidence 5545667999998
No 304
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.84 E-value=0.0048 Score=61.83 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.7
Q ss_pred ceEEECCCCCchHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~ 180 (330)
-++|+||+|+||||+.+.++.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999953
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.83 E-value=0.00074 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=22.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||.|+|||||++++++.+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999999987
No 306
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0055 Score=58.60 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||.+.|++.+
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 458999999999999999999865
No 307
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.81 E-value=0.0051 Score=58.72 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.+++.+
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 469999999999999999999876
No 308
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.80 E-value=0.0026 Score=51.28 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=25.3
Q ss_pred cceEEECCCCCchH-HHHHHHHHHh-CCCcEEEecc
Q psy3808 159 KGILLFGPPGTGKS-YLAKAVATEA-NNSTFFSVSS 192 (330)
Q Consensus 159 ~~ill~GppGtGKT-~la~~la~~~-~~~~~~~~~~ 192 (330)
.-.+++||.|+||| .|.+++.+.. .+..++.+++
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 34888999999999 8888888765 3455555553
No 309
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.79 E-value=0.00079 Score=55.77 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~ 183 (330)
.-+.|.||+|+|||||++.+++.++
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999773
No 310
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.79 E-value=0.00079 Score=55.19 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||+++|++.+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999987
No 311
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.77 E-value=0.0016 Score=58.01 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++.-++|.||+|+||||+++.++..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34569999999999999999999987
No 312
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.74 E-value=0.0009 Score=55.47 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 458899999999999999999987
No 313
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.74 E-value=0.0016 Score=57.32 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.-++|+||||+|||++|..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999975
No 314
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.003 Score=60.39 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.6
Q ss_pred eEEECCCCCchHHHHHHHHHHh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~ 182 (330)
+.|.||+|+|||||++.|++.+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999999876
No 315
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.72 E-value=0.013 Score=54.33 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-++|.||+|+|||||++.|++.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 458999999999999999999876
No 316
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.72 E-value=0.008 Score=57.53 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.4
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
...+.|.||+|+|||||++.+++.+
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3469999999999999999999876
No 317
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.66 E-value=0.0012 Score=53.91 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=26.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
-|.|.||+|||||++++.+|..+ |.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~l-g~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY-NIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT-TCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh-CcCEEC
Confidence 58999999999999999999999 788874
No 318
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.65 E-value=0.0037 Score=59.85 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||+++|++.+
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999865
No 319
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.64 E-value=0.0012 Score=57.52 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHhC
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~~ 183 (330)
+...+.|+||+|+|||||++.|++.+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 335699999999999999999999883
No 320
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.63 E-value=0.011 Score=55.78 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|+|||||+++|++.+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999865
No 321
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.63 E-value=0.0011 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999876
No 322
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.62 E-value=0.0013 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.8
Q ss_pred CcceEEECCCCCchHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~ 181 (330)
.++++|.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999999875
No 323
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.62 E-value=0.015 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
++..+++.||+|+||||++..+|..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44678899999999999999999887
No 324
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.62 E-value=0.0029 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=20.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-.+++||+|+|||+.+..++..+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 357889999999999888888776
No 325
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.61 E-value=0.0059 Score=57.57 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-+.|.||+|+|||||.+.|++.+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999999865
No 326
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.59 E-value=0.0056 Score=56.38 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=27.1
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh---CCCcEEEecc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA---NNSTFFSVSS 192 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~---~~~~~~~~~~ 192 (330)
+..-++|.|+||+|||+++..+|... .+.+++.++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 33458999999999999999998765 2445655544
No 327
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.58 E-value=0.0025 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-|.|.||+||||||+++.|+..+
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999988
No 328
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.58 E-value=0.0023 Score=55.82 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.6
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+.-+.|.||+||||||+++.++..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3568999999999999999999877
No 329
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.58 E-value=0.0048 Score=58.10 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=20.6
Q ss_pred CcceEEECCCCCchHHHHHH--HHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKA--VATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~--la~~~ 182 (330)
...++|.||+|||||||++. ++...
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35699999999999999999 44544
No 330
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.56 E-value=0.0017 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~ 183 (330)
.-|+|.|||||||||+++.++..+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999984
No 331
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.56 E-value=0.00051 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.3
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-|.|.|++||||||+++.++..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999988
No 332
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.55 E-value=0.0038 Score=58.90 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||.|+|||||+++|++.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999875
No 333
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.53 E-value=0.0069 Score=53.59 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||||+|||||.++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999765
No 334
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.50 E-value=0.0026 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+||||||+++.++..+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999987
No 335
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.48 E-value=0.0021 Score=53.47 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=26.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEecccch
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 195 (330)
.+-|.|||||||||+++.|+..+ +.+.+ +..++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~-g~~~i--s~gdl 42 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF-GIPQI--STGDM 42 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCCEE--CHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh-CCCee--echHH
Confidence 57899999999999999999998 65554 55444
No 336
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.47 E-value=0.0037 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||++.|+..+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 458899999999999999999987
No 337
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.47 E-value=0.001 Score=55.50 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=15.5
Q ss_pred cceEEECCCCCchHHHHHHHH-HHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVA-TEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la-~~~ 182 (330)
.-+.|.||+||||||+++.++ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458899999999999999999 765
No 338
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.46 E-value=0.0053 Score=57.67 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=26.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccc
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSD 194 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~ 194 (330)
.-|+|.|.||+||||+++.++..++ +.....++.++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 3589999999999999999998872 22333445444
No 339
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.46 E-value=0.014 Score=57.56 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.-++|+||+|+||||+.+.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35899999999999999999875
No 340
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.46 E-value=0.0076 Score=63.01 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|+||+|||||||++.+.+.+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 33569999999999999999999887
No 341
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.45 E-value=0.0016 Score=54.90 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCC
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNS 185 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~ 185 (330)
-+.|.||+||||||+++.++..+ |.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l-G~ 51 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL-GQ 51 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-TG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-ch
Confidence 48899999999999999999987 44
No 342
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.45 E-value=0.051 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-+.|+||+|+|||+|.++|+..+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999996554
No 343
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.44 E-value=0.0018 Score=51.76 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=25.7
Q ss_pred eEEECCCCCchHHHHHHHHHHhCCCcEEEecccc
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 194 (330)
++++|++|||||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~--~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD--APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS--CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc--CCCeEEEecCC
Confidence 689999999999999999976 45666665543
No 344
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.43 E-value=0.004 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=19.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
+.+++.+|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999988777654
No 345
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.42 E-value=0.0014 Score=56.85 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=23.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccch
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDL 195 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~ 195 (330)
-|.|.||+||||||+++.++..++ +..+..++.+.+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 588999999999999999999772 122344555444
No 346
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.41 E-value=0.0015 Score=53.59 Aligned_cols=23 Identities=43% Similarity=0.722 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.-+.|.||+|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999975
No 347
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.33 E-value=0.015 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.2
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|+|.|+||+|||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999864
No 348
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.33 E-value=0.0021 Score=55.32 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-++|+||||+|||+|+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999755
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.33 E-value=0.0023 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-.+|+||+|+|||+++++|+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 350
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0042 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+++.|++|+|||+|+..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998753
No 351
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.32 E-value=0.0028 Score=60.55 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=30.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~ 195 (330)
.-|+|.|+|||||||++++++..+. +.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4599999999999999999999872 567877765443
No 352
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.31 E-value=0.012 Score=48.12 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=21.9
Q ss_pred eEEECCCCCchHHHHHHHHHHh--CCCcEEEe
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEA--NNSTFFSV 190 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~--~~~~~~~~ 190 (330)
.+++||.|+|||+.+-.++... .+..++.+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 5688999999999888887765 23444433
No 353
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.31 E-value=0.022 Score=45.14 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..++|.|++|+|||+|+..+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999873
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.30 E-value=0.0035 Score=54.79 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|||||||++.|+..+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999976
No 355
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.29 E-value=0.01 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.|++.+
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 458999999999999999999865
No 356
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.28 E-value=0.0042 Score=56.67 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=18.8
Q ss_pred cceEEECCCCCchHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~ 180 (330)
+-.++.|+||||||++...++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 3578999999999999988765
No 357
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.28 E-value=0.0028 Score=52.60 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=26.1
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEE
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFS 189 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~ 189 (330)
-|.|.|++|||||++++.+|..+ |.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l-g~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL-GIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-TCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc-CCcEEc
Confidence 58899999999999999999999 777764
No 358
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.28 E-value=0.0026 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 368899999999999999999886
No 359
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.27 E-value=0.0024 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-++|.||||+|||+|+..++..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999876
No 360
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.25 E-value=0.018 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.9
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..+.|.|+||+|||+|..++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 361
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.24 E-value=0.0058 Score=60.29 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=36.2
Q ss_pred CCCCcccccchHHHHHHHHHHhhcccCCccc-ccCCCCCCcceEEECCCCCchHHHHHHHHHH
Q psy3808 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQL-FTGKRVPWKGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 120 ~~~~~~~~~G~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ill~GppGtGKT~la~~la~~ 181 (330)
+...|+++.-.....+.+...-.+|...... +...-.....+++.||+|||||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4456777776666666666554444321100 0000001135999999999999977776544
No 362
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.23 E-value=0.002 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.+++.+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999875
No 363
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.21 E-value=0.012 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..|.|.|+||+||||++..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998775
No 364
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.21 E-value=0.0029 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+||||++..++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999876
No 365
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.20 E-value=0.02 Score=59.64 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
+...+.|.||+|||||||++.+++.+
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33569999999999999999999876
No 366
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.18 E-value=0.0053 Score=53.82 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=26.9
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
+..-++|.|+||+|||+++..+|... .+.+++.++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 33459999999999999999998765 2345555554
No 367
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.15 E-value=0.017 Score=60.43 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.8
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~ 182 (330)
|...+-|+||+|||||||+..+.+.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34569999999999999999999876
No 368
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.13 E-value=0.0029 Score=53.55 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.0
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.-+.|.||+|+|||||++.+++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999985
No 369
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.12 E-value=0.0025 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||.+.+++.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999876
No 370
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.12 E-value=0.0024 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||.+.+++.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999865
No 371
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.12 E-value=0.018 Score=46.68 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.3
Q ss_pred cceEEECCCCCchHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAK 176 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~ 176 (330)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998633
No 372
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.12 E-value=0.0024 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||++.+++.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999865
No 373
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.09 E-value=0.0031 Score=53.90 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=27.6
Q ss_pred cCCeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCC
Q psy3808 217 HRPSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATN 257 (330)
Q Consensus 217 ~~~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn 257 (330)
..|.+|++|| .+|......+...+..+... ...+|+ +|-
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvii-vtH 222 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFII-VTH 222 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEE-ECS
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE-Eee
Confidence 5678999999 67888888888888877443 334444 443
No 374
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.08 E-value=0.015 Score=56.44 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=30.3
Q ss_pred CeEEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEe
Q psy3808 219 PSIIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYI 276 (330)
Q Consensus 219 ~~ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~ 276 (330)
|.+|++|| .+|......+..++..+... +..||..|-. ..+...+++++.+
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~--g~tvi~vtHd-----~~~~~~~d~i~~l 618 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDN--GDTVLVIEHN-----LDVIKTADYIIDL 618 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCC-----HHHHTTCSEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-----HHHHHhCCEEEEe
Confidence 46999999 66777777777777766433 2333334432 2233445665555
No 375
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.06 E-value=0.0041 Score=52.14 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCCC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANNS 185 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~~ 185 (330)
.-|.|.|++||||||+++.++..+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 458999999999999999999998433
No 376
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.05 E-value=0.003 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.+.|.||+|+|||||.+.|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
No 377
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.04 E-value=0.041 Score=44.99 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=17.9
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
+.+++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 46999999999999866554433
No 378
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.04 E-value=0.004 Score=59.14 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=29.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--C-CcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--N-STFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--~-~~~~~~~~~~~ 195 (330)
.-|+|.|+|||||||+|++++..++ | .+++.++...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 4589999999999999999999983 2 66777766544
No 379
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.016 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.0
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.|+|.|++|+|||+|+..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 380
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.04 E-value=0.032 Score=45.44 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.1
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 381
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.01 E-value=0.0019 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN 184 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~ 184 (330)
.-|+|.|++||||||+++.|+..+.+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45889999999999999999999844
No 382
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.99 E-value=0.032 Score=56.62 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.8
Q ss_pred cceEEECCCCCchHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVA 179 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la 179 (330)
.-++|+||.|+||||+.+.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 458899999999999999993
No 383
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.99 E-value=0.014 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=22.1
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..|+|.|.||+||||+++.++..+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999887
No 384
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.99 E-value=0.003 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.+++.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458899999999999999999876
No 385
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.98 E-value=0.057 Score=52.40 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=32.0
Q ss_pred hcCCe--EEEEeC---CcchhhHHHHHHHHhcCCCCCCcEEEEecCCCCCCcCHHHHhccccEEEe
Q psy3808 216 AHRPS--IIFIDE---RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYI 276 (330)
Q Consensus 216 ~~~~~--ii~iDe---~~~~~~~~~l~~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~ 276 (330)
...|. +|++|| .+|......+..++..+... . ..||..|-. ++ +...+++++.+
T Consensus 218 ~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g-~tvi~vtHd---~~--~~~~~d~ii~l 276 (670)
T 3ux8_A 218 GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-G-NTLIVVEHD---ED--TMLAADYLIDI 276 (670)
T ss_dssp HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-T-CEEEEECCC---HH--HHHHCSEEEEE
T ss_pred hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-C-CEEEEEeCC---HH--HHhhCCEEEEe
Confidence 34666 999999 67777777787777766432 2 333334432 22 33345555554
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.97 E-value=0.0019 Score=51.20 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|||||||++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999987
No 387
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.96 E-value=0.0031 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.6
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.+++.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458899999999999999999865
No 388
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.96 E-value=0.0039 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.++|.||+|+|||+|++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 389
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.96 E-value=0.019 Score=57.67 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.9
Q ss_pred cceEEECCCCCchHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~ 180 (330)
..+.|.||+|+|||||++.|++
T Consensus 462 e~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999994
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.94 E-value=0.0031 Score=56.43 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=22.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++|.||+|+|||||+++++..+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 469999999999999999999987
No 391
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.93 E-value=0.0037 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.++|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 392
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.93 E-value=0.028 Score=44.69 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..+++.|++|+|||+|+..+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999865
No 393
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.92 E-value=0.0045 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.355 Sum_probs=22.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-|.|.|++|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999887
No 394
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.90 E-value=0.012 Score=56.53 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.+.|.||+|+|||||+++|++..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 395
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.89 E-value=0.031 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.-|.|.|+||+|||||..++.+.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 34999999999999999999874
No 396
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.89 E-value=0.0047 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-|.|.||+|+||||+++.++..+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358888999999999999999988
No 397
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.87 E-value=0.0039 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|||||||++.|++.+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999999987
No 398
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.87 E-value=0.025 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.2
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|++.|++|+|||+|+..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 399
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.86 E-value=0.03 Score=54.98 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++|.||+|+||||+.+.++...
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 358899999999999999998753
No 400
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.84 E-value=0.0043 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=18.4
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-|.|.||+|+||||+++.++..+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48888999999999999999988
No 401
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.81 E-value=0.0035 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=21.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||.+.++..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999864
No 402
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.81 E-value=0.031 Score=49.36 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=18.2
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
+.+++.+|+|+|||..+-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 47999999999999876554443
No 403
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.78 E-value=0.058 Score=45.60 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|+|.|+||+|||+|..++.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999863
No 404
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.76 E-value=0.0097 Score=54.94 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=26.6
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh---CCCcEEEecc
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA---NNSTFFSVSS 192 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~---~~~~~~~~~~ 192 (330)
..-++|.|+||+|||+++..++..+ .|.++..++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3458999999999999999998865 2445555543
No 405
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.76 E-value=0.019 Score=52.65 Aligned_cols=21 Identities=24% Similarity=0.244 Sum_probs=16.8
Q ss_pred cceEEECCCCCchHHHH-HHHH
Q psy3808 159 KGILLFGPPGTGKSYLA-KAVA 179 (330)
Q Consensus 159 ~~ill~GppGtGKT~la-~~la 179 (330)
+.+++.||+|+|||..+ .++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999875 3343
No 406
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.74 E-value=0.051 Score=45.59 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.6
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|+|.|.||+|||+|+.++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999999864
No 407
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.72 E-value=0.0066 Score=46.88 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-.+|+||.|+|||++..||.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998766
No 408
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.69 E-value=0.032 Score=58.16 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+-|.||+|+|||||++.+++..
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 458999999999999999999865
No 409
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.69 E-value=0.071 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=17.7
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-.+++||.|+|||+.+-..+...
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47788999999997666665544
No 410
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.67 E-value=0.0064 Score=46.89 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.2
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.+++.|++|+|||+|+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 411
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.66 E-value=0.03 Score=49.57 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.|+||+||||++..++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998765
No 412
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.65 E-value=0.011 Score=52.18 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=27.0
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
+..-++|.|+||+|||+++..+|... .+.++..++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33459999999999999999998765 3455555444
No 413
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.64 E-value=0.0053 Score=47.99 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.1
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.++|.|++|+|||+|...+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 414
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.64 E-value=0.079 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.1
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.+.|.|+||+|||+|..++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999999864
No 415
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.64 E-value=0.0082 Score=56.00 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=22.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~ 183 (330)
..|+|.|.+||||||++++++..++
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999993
No 416
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.63 E-value=0.0044 Score=49.39 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=19.7
Q ss_pred ceEEECCCCCchHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~ 180 (330)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 417
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.63 E-value=0.0046 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-+.|.||+|+|||||++.+++.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458899999999999999999875
No 418
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.61 E-value=0.055 Score=46.18 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|+|.|+||+|||+|..++.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999864
No 419
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.60 E-value=0.0075 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++|.|++|+|||+|+..++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999764
No 420
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=95.58 E-value=0.3 Score=33.52 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3808 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYL 72 (330)
Q Consensus 3 ~~~~a~~~~~~A~~~d~~~~~~~al~~y~~a~q~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~e~Lk~~l 72 (330)
.|..|=-.-.+|-++-..|+|++|+.++..+..++..+++.- ..+...+.+.-+.+-.+....-+++..
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmklt-qs~qa~~SLqLQrd~HlKQ~~liq~r~ 79 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLT-ESEQAHLSLELQRDSHMKQLLLIQERW 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999999999999999876 446566666655555554444444433
No 421
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.58 E-value=0.007 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.4
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.+++.|++|+|||+|+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999874
No 422
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.55 E-value=0.0066 Score=58.46 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=18.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
..+++||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999877776654
No 423
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.54 E-value=0.0076 Score=46.62 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.1
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 424
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.54 E-value=0.014 Score=53.96 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=25.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHhCCCcEEEeccc
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSS 193 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~~~~~~~~~~~~ 193 (330)
.+++.+|+|+|||..+-.++... +...+.+.+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~-~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL-STPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-CSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc-CCCEEEEECC
Confidence 59999999999999988888877 4445444443
No 425
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.51 E-value=0.0046 Score=58.39 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=28.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC---CCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN---NSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~---~~~~~~~~~~~~ 195 (330)
..+.|.|++||||||++++|+..+. |..+..++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4588999999999999999999883 123444666554
No 426
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.51 E-value=0.0061 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..++|.|+||+|||+|...++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 427
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.47 E-value=0.0093 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
.-|.|.|++|+||||+++.++..+
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458888999999999999999987
No 428
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.47 E-value=0.0076 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN 183 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~ 183 (330)
.-|.|.|++|+||||+++.++..+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999999994
No 429
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.46 E-value=0.0082 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.+++.|++|+|||+|+..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999998643
No 430
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.44 E-value=0.0075 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.6
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.+++.|++|+|||+|+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 431
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.44 E-value=0.014 Score=53.65 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=27.7
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--CCCcEEEecc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--NNSTFFSVSS 192 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~~~~~~~~~~ 192 (330)
+..-++|.|+||+|||+++..+|... .|.++..++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 33459999999999999999998765 3456666655
No 432
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.44 E-value=0.0085 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..+++.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 433
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.43 E-value=0.0086 Score=46.99 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 434
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.43 E-value=0.0087 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.8
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
.+++.|++|+|||+|+..+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998753
No 435
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.39 E-value=0.0085 Score=46.89 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.4
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 36999999999999999999754
No 436
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.39 E-value=0.071 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.6
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|.+.|++|+|||+|..++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999973
No 437
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.39 E-value=0.009 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..|++.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 438
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.37 E-value=0.0087 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.3
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
-|.|.|++|+||||+++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48889999999999999999987
No 439
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.37 E-value=0.14 Score=43.61 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.4
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
..++.+|+|+|||.++-+++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARY 151 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHH
Confidence 4678999999999998777664
No 440
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.35 E-value=0.0095 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.+++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999865
No 441
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.35 E-value=0.15 Score=45.43 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.0
Q ss_pred cceEEECCCCCchHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVA 179 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la 179 (330)
+.+++.+|+|+|||..+-..+
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 679999999999998654433
No 442
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.0086 Score=55.29 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.8
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|||||||++.|++..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 469999999999999999999865
No 443
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.32 E-value=0.0087 Score=46.53 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=20.1
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.+++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 444
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.32 E-value=0.019 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.1
Q ss_pred CcceEEECCCCCchHHHHHHHHHHh
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++++.||+|+|||++++.++..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 445
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.0088 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 446
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.30 E-value=0.013 Score=55.42 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhC--CCcEEEecccch
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEAN--NSTFFSVSSSDL 195 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~ 195 (330)
..|+|.|++||||||+++.++..++ |.++..++...+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4588999999999999999999872 345666665544
No 447
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.29 E-value=0.0098 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.1
Q ss_pred CcceEEECCCCCchHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~ 181 (330)
..+++|.|++|+|||++|..+...
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999888763
No 448
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.28 E-value=0.01 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.+++.|++|+|||+|+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 449
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.28 E-value=0.0064 Score=54.84 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.5
Q ss_pred cceEEECCCCCchHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~ 180 (330)
..+.|.|+||+|||||.+++.+
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999998
No 450
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.28 E-value=0.0025 Score=53.01 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=20.4
Q ss_pred eEEECCCCCchHHHHHHHHHHh
Q psy3808 161 ILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~~ 182 (330)
+.|.||+|||||||+++|+..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5688999999999999999987
No 451
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.27 E-value=0.29 Score=41.90 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.9
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..|++.|.||+|||+|..++.+.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 47999999999999999999864
No 452
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.25 E-value=0.011 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 453
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.25 E-value=0.013 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..|++.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999863
No 454
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.25 E-value=0.0099 Score=46.24 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.2
Q ss_pred ceEEECCCCCchHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~ 180 (330)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999964
No 455
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.25 E-value=0.011 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.5
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.+++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999863
No 456
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.22 E-value=0.0072 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.9
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
.-+.|.||.|+||||+++.++..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999999987
No 457
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.22 E-value=0.011 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 458
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.19 E-value=0.012 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.+++.|++|+|||+|+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999854
No 459
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.15 E-value=0.054 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.7
Q ss_pred cceEEECCCCCchHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVA 179 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la 179 (330)
+.+++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 469999999999998654433
No 460
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.14 E-value=0.012 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..+++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 461
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.14 E-value=0.012 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.3
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|++.|++|+|||+|+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 462
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.13 E-value=0.013 Score=47.78 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.7
Q ss_pred cceEEECCCCCchHHHHHHHHHHhCC
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEANN 184 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~~~ 184 (330)
.-.+|+||.|+|||++..||...+.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 45889999999999999999988744
No 463
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.11 E-value=0.0093 Score=54.26 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.8
Q ss_pred eEEECCCCCchHHHHHHHHHH
Q psy3808 161 ILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 161 ill~GppGtGKT~la~~la~~ 181 (330)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 464
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.10 E-value=0.0098 Score=46.13 Aligned_cols=21 Identities=48% Similarity=0.805 Sum_probs=19.2
Q ss_pred ceEEECCCCCchHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVAT 180 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~ 180 (330)
.+++.|++|+|||+|+..+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999864
No 465
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.10 E-value=0.012 Score=48.36 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.9
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..++|.|++|+|||+|+..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999875
No 466
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.10 E-value=0.011 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 467
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.10 E-value=0.043 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.4
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..|+|.|.||+|||+|...+.+.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999999763
No 468
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.09 E-value=0.012 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.3
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 469
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.09 E-value=0.011 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.+++.|++|+|||+|+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999875
No 470
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.09 E-value=0.012 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999865
No 471
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.08 E-value=0.013 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+++.|++|+|||+|+..+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998643
No 472
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.05 E-value=0.012 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..|++.|++|+|||+|+..+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 473
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.05 E-value=0.14 Score=42.52 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.8
Q ss_pred cceEEECCCCCchHHHH
Q psy3808 159 KGILLFGPPGTGKSYLA 175 (330)
Q Consensus 159 ~~ill~GppGtGKT~la 175 (330)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999863
No 474
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.04 E-value=0.013 Score=46.99 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.0
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 475
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.04 E-value=0.013 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.6
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 476
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.04 E-value=0.17 Score=40.63 Aligned_cols=18 Identities=39% Similarity=0.316 Sum_probs=15.3
Q ss_pred cceEEECCCCCchHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAK 176 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~ 176 (330)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 477
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.03 E-value=0.016 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..+++.|++|+|||+|+..+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999854
No 478
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.03 E-value=0.012 Score=58.21 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=18.9
Q ss_pred ceEEECCCCCchHHHHHHHHHHh
Q psy3808 160 GILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~~ 182 (330)
..+++||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999998877776654
No 479
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.01 E-value=0.012 Score=46.97 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|+|.|++|+|||+|+..+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
No 480
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.00 E-value=0.014 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..|++.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 481
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.99 E-value=0.012 Score=46.55 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 482
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.97 E-value=0.013 Score=46.12 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.3
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+..+...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999753
No 483
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.96 E-value=0.015 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|+|.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 484
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.96 E-value=0.016 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.7
Q ss_pred CcceEEECCCCCchHHHHHHHHHH
Q psy3808 158 WKGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 158 ~~~ill~GppGtGKT~la~~la~~ 181 (330)
..+++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 485
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.95 E-value=0.014 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.8
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|+|.|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999888764
No 486
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.94 E-value=0.0044 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.2
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..+.|.|++|+|||+|.+++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999998753
No 487
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.94 E-value=0.013 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..+++.|++|+|||+|+..+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999873
No 488
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.015 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
-.|++.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
No 489
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.92 E-value=0.015 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.1
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|++.|++|+|||+|+..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 490
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.92 E-value=0.015 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.4
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||+++|+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 358999999999999999999765
No 491
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.90 E-value=0.02 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.3
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.||+|+|||||.+.|++..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999987
No 492
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.90 E-value=0.052 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.3
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
+.++++||+|+|||..+-.++..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999988666654
No 493
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.89 E-value=0.015 Score=46.33 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|++.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5999999999999999998864
No 494
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.88 E-value=0.015 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.3
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.|+|.|++|+|||+|+..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 495
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.88 E-value=0.015 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.5
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
..+.|.|+||+|||||..+++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999864
No 496
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.87 E-value=0.073 Score=43.53 Aligned_cols=19 Identities=26% Similarity=0.231 Sum_probs=15.0
Q ss_pred eEEECCCCCchHH-HHHHHH
Q psy3808 161 ILLFGPPGTGKSY-LAKAVA 179 (330)
Q Consensus 161 ill~GppGtGKT~-la~~la 179 (330)
.+++||.|+|||+ |.+.+-
T Consensus 31 ~vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 6889999999999 555543
No 497
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.84 E-value=0.02 Score=53.60 Aligned_cols=36 Identities=11% Similarity=-0.076 Sum_probs=27.6
Q ss_pred CCcceEEECCCCCchHHHHHHHHHHh--C-CCcEEEecc
Q psy3808 157 PWKGILLFGPPGTGKSYLAKAVATEA--N-NSTFFSVSS 192 (330)
Q Consensus 157 ~~~~ill~GppGtGKT~la~~la~~~--~-~~~~~~~~~ 192 (330)
+..-++|.|+||+|||+++..+|... . +.++..++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 33458999999999999999999876 2 446665554
No 498
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.83 E-value=0.016 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.0
Q ss_pred cceEEECCCCCchHHHHHHHHHHh
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATEA 182 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~~ 182 (330)
-.|+|.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 369999999999999998887754
No 499
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.83 E-value=0.016 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.7
Q ss_pred cceEEECCCCCchHHHHHHHHHH
Q psy3808 159 KGILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 159 ~~ill~GppGtGKT~la~~la~~ 181 (330)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 500
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.82 E-value=0.011 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred ceEEECCCCCchHHHHHHHHHH
Q psy3808 160 GILLFGPPGTGKSYLAKAVATE 181 (330)
Q Consensus 160 ~ill~GppGtGKT~la~~la~~ 181 (330)
.+++.|++|+|||+|+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999864
Done!