RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3808
(330 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 213 bits (543), Expect = 8e-69
Identities = 89/225 (39%), Positives = 117/225 (52%), Gaps = 25/225 (11%)
Query: 118 EKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAK 176
E P V + DVAG E AKE LKE V +K P F KG+LL GPPG GK++LA+
Sbjct: 2 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 60
Query: 177 AVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID------- 229
AVA EA F + S SD V ++G V+ LFE A+ H P I+FIDE ID
Sbjct: 61 AVAGEA-RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE-IDAVGRKRG 118
Query: 230 ----------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIA 277
N L + + G D I+V+ ATN P +LD A+ R RF+++I I
Sbjct: 119 SGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPDILDPALLRPGRFDRQIAID 177
Query: 278 LPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
P++ R + R H + D +L LAKRT G+ GAD+ L
Sbjct: 178 APDVKGREQILRIHA-RGKPLAEDVDLALLAKRTPGFVGADLENL 221
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 205 bits (524), Expect = 7e-66
Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 25/231 (10%)
Query: 115 IVMEKPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSY 173
+ ++ + DVAG + AKE + E V ++ P F KG+L+ GPPGTGK+
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 174 LAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERID---- 229
LAKA+A EA FF++S SD V ++G V+ +FE A+ P IIFIDE ID
Sbjct: 61 LAKAIAGEA-KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDE-IDAVGR 118
Query: 230 -------------RGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRI 274
N + + + G +GI+V+ ATN P VLD A+ R RF++++
Sbjct: 119 QRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
Query: 275 YIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
+ LP++ R + + H+ D + +A+ T G+SGAD++ L
Sbjct: 178 VVGLPDVRGREQILKVHMRR-VPLAPDIDAAIIARGTPGFSGADLANLVNE 227
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 163 bits (413), Expect = 3e-49
Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 22/225 (9%)
Query: 120 PNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAV 178
P V W D+ GLE K L+E V P++ P F + P KG+L +GPPG GK+ LAKA+
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 179 ATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE----RIDRG--- 231
A E + F S+ +L++ W GESE V+ +F+ AR P ++F DE RG
Sbjct: 62 ANEC-QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 120
Query: 232 ---------ISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPE 280
+ N + + G+ + ++GATN P ++D AI R R ++ IYI LP+
Sbjct: 121 GDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 179
Query: 281 LNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLERN 325
+R+ + + +L + + + LAK T G+SGAD++ + +
Sbjct: 180 EKSRVAILKANLRKSPVAKDVDL-EFLAKMTNGFSGADLTEICQR 223
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 138 bits (348), Expect = 1e-39
Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 17/216 (7%)
Query: 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRV-PWKGILLFGPPGTGKSYLAKAVAT 180
V + DV G +KE V LP++ P LF V P +GILL+GPPGTGK+ +A+AVA
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 181 EANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGIS------- 233
E FF ++ +++SK GESE ++ FE A + P+IIFIDE
Sbjct: 61 ETGA-FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 119
Query: 234 -----NALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKRIYIALPELNARLF 286
+ L L ++V+ ATN P +D A+RR RF++ + I +P+ RL
Sbjct: 120 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 179
Query: 287 MFRHHLGNTRNTISDENLKELAKRTEGYSGADISTL 322
+ + H N + D +L+++A T G+ GAD++ L
Sbjct: 180 ILQIHTKNMKLAD-DVDLEQVANETHGHVGADLAAL 214
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 107 bits (269), Expect = 1e-27
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 27/233 (11%)
Query: 94 SDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTD--VAGLEAAKEALKEAVI--LPIKFPQ 149
S + D + +++ A E ++ E +V ++ + L P
Sbjct: 53 SGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPV 112
Query: 150 LFT--GKRVPWKGILLFGPPGTGKSYLAKAVATEANNS-TFFSVSSSDLVSKWLGESEKL 206
+ G R +++ G +GK+ L A+ + +V + +S + +
Sbjct: 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVF 172
Query: 207 VKTLFELARAHRPSIIFIDE-------RIDRGISNALFLLLSGVGNDMDG------ILVL 253
V + +I ID S + + +D+ +V+
Sbjct: 173 VDDIARAMLQ--HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVI 230
Query: 254 GATN---IPWVLDAAIRR--RFEKRIYIALPELNARLFMFRHHLGNTRNTISD 301
+ N + ++ R + +++ + +
Sbjct: 231 ASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHT 283
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 93.5 bits (231), Expect = 6e-23
Identities = 40/200 (20%), Positives = 77/200 (38%), Gaps = 22/200 (11%)
Query: 131 EAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSV 190
+ L + +L Q R P +LL GPP +GK+ LA +A E +N F +
Sbjct: 16 DPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE-SNFPFIKI 71
Query: 191 SSSDLVSKWLGESE-KLVKTLFELARAHRPSIIFIDER------------IDRGISNALF 237
S D + + ++ + +K +F+ A + S + +D+ + AL
Sbjct: 72 CSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALL 131
Query: 238 LLLSGVGNDMDGILVLGATNIPWVLDAA-IRRRFEKRIYIALPELNARLFMFRHHLGNTR 296
+LL +L++G T+ VL + F I++ P + +
Sbjct: 132 VLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIATGEQLLEAL--ELL 187
Query: 297 NTISDENLKELAKRTEGYSG 316
D+ +A++ +G
Sbjct: 188 GNFKDKERTTIAQQVKGKKV 207
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B,
SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 84.1 bits (208), Expect = 2e-21
Identities = 45/71 (63%), Positives = 52/71 (73%)
Query: 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYL 62
K I++A KA + DK NYEEAL+LY H+VQYFLH +KYE + KQSIR KC EYL
Sbjct: 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 66
Query: 63 ARAEKLKEYLK 73
RAEKLKEYLK
Sbjct: 67 DRAEKLKEYLK 77
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 77.2 bits (190), Expect = 1e-18
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 3 TFDKGINIAIKATEADKNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYL 62
+ + +A E D Y++AL Y + L LK + + +R K Y+
Sbjct: 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGT-KESSKRCVLRTKISGYM 69
Query: 63 ARAEKLKEYLKKGKKQPVKDGES 85
RAE +K+YL + K+ S
Sbjct: 70 DRAENIKKYLDQEKEDGKSGPSS 92
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 80.9 bits (199), Expect = 8e-18
Identities = 31/206 (15%), Positives = 56/206 (27%), Gaps = 20/206 (9%)
Query: 128 AGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTF 187
AG+ L + + F + + L GP +GK+ LA A+
Sbjct: 124 AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK-A 182
Query: 188 FSVSSSDLVSK-WLGESEKLVKTLFELARA------HRPSIIFIDERIDRGISNALFLLL 240
+V+ LG + +FE + PS I+ +D + + L +
Sbjct: 183 LNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN-LD-NLRDYLDGSV 240
Query: 241 SGVGNDMDGILVLGATNIPWV-----LDAAIRR--RFEKRIYIALPELNARLFMFRHHLG 293
V + + P + RF K+I +
Sbjct: 241 K-VNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKH--CLERSEF 297
Query: 294 NTRNTISDENLKELAKRTEGYSGADI 319
I + L A+
Sbjct: 298 LLEKRIIQSGIALLLMLIWYRPVAEF 323
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 71.9 bits (175), Expect = 5e-15
Identities = 27/231 (11%), Positives = 57/231 (24%), Gaps = 41/231 (17%)
Query: 122 VKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATE 181
V +TD + L+E + Q P LL G PG+GK+ L A+ E
Sbjct: 4 VNFTDKQFENRLNDNLEELI-------QGKKAVESP-TAFLLGGQPGSGKTSLRSAIFEE 55
Query: 182 ANNSTFFSVSSSDLV---SKWLGESEKLVKTLFELARAHRPSIIFID------------- 225
+ + + + K + + + +
Sbjct: 56 T-QGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVI 114
Query: 226 ----------ERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRR--RFEKR 273
+ + + V LG + A R +
Sbjct: 115 EGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPK 174
Query: 274 IYIALPELNARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324
+ N + H + + + + + YS + ++
Sbjct: 175 QAHDIVVKNLPTNLETLH----KTGLFSDIRLYNREGVKLYSSLETPSISP 221
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 68.7 bits (167), Expect = 8e-14
Identities = 41/210 (19%), Positives = 73/210 (34%), Gaps = 31/210 (14%)
Query: 127 VAGLEAAKEALKEAVILPIKFPQLFTGKR--VPWKGILLFGPPGTGKSYLAKAVA-TEAN 183
+ G AK A+ A+ + QL R V K IL+ GP G GK+ +A+ +A
Sbjct: 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 75
Query: 184 NSTFFSVSSSDLVSKWLGESEKLVKTLFELARA-----HRPSIIFIDERID--------- 229
+ V E + +++ L + A + I+FIDE ID
Sbjct: 76 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDE-IDKICKKGEYS 134
Query: 230 ------RGISNALFLLLSG----VGN---DMDGILVLGATNIPWVLDAAIRRRFEKRIYI 276
G+ L L+ G + D IL + + + + + R+ I
Sbjct: 135 GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 194
Query: 277 ALPELNARLFMFRHHLGNTRNTISDENLKE 306
+ F L +++++
Sbjct: 195 RVELTALSAADFERILTEPHASLTEQYKAL 224
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 65.7 bits (159), Expect = 5e-13
Identities = 42/220 (19%), Positives = 71/220 (32%), Gaps = 34/220 (15%)
Query: 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182
+ G E K+ L+ + ++ P + +LLFGPPG GK+ LA +A E
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHEL 59
Query: 183 NNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISNALFLLLSG 242
S + + I+FIDE I R A L
Sbjct: 60 -GVNLRVTSGPAIE-------KPGDLAAILANSLEEGDILFIDE-IHRLSRQAEEHLYPA 110
Query: 243 VGNDMDGIL------------------VLGATNIPWVLDAAIRRRFEKRIYIALPELNAR 284
+ + + I+ ++GAT P ++ A + RF ++
Sbjct: 111 MEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL 170
Query: 285 LFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324
I++E E+ +R+ G R
Sbjct: 171 AQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRR 210
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 62.7 bits (151), Expect = 5e-12
Identities = 39/217 (17%), Positives = 75/217 (34%), Gaps = 29/217 (13%)
Query: 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182
+ G E K+ L A+ + +LL GPPG GK+ LA +A+E
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASEL 59
Query: 183 NNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISNALF----- 237
+ + S + + + + I R+++ + L+
Sbjct: 60 QTNIHVT-------SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIED 112
Query: 238 ---LLLSGVG-------NDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFM 287
++ G G D+ ++GAT +L + +R RF + + + +
Sbjct: 113 FQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEI 172
Query: 288 FRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324
+ I D + +AKR+ G I +R
Sbjct: 173 IKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKR 209
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 55.6 bits (132), Expect = 2e-09
Identities = 34/218 (15%), Positives = 58/218 (26%), Gaps = 16/218 (7%)
Query: 123 KWTDVAGLEAAKEALKEAVI---LPIKFPQLFTGKR--VPWKGILLFGPPGTGKSYLAKA 177
V G + + LK + K GK ++ +L+GPPG GK+ A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 178 VATEANNSTFFSVSSSDLVSKWLGESEK-----------LVKTLFELARAHRPSIIFIDE 226
VA E +S L K + +I +DE
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDE 131
Query: 227 RIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLF 286
+ + ++ N + R I P+ N+
Sbjct: 132 VDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKS 191
Query: 287 MFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324
+ + + L + T G I+ L
Sbjct: 192 RLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST 229
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 51.3 bits (121), Expect = 4e-08
Identities = 27/222 (12%), Positives = 57/222 (25%), Gaps = 36/222 (16%)
Query: 129 GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-- 186
E + L + ++ P + L G PGTGK+ + + + T
Sbjct: 20 HREQQLQQLDILLGNWLRNP------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA 73
Query: 187 -FFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIF---------------------I 224
F ++ + E R F
Sbjct: 74 RFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDA 133
Query: 225 DERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLD----AAIRRRFEKRIYIALPE 280
+S + L I ++ + VL+ + + I +
Sbjct: 134 FNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT 193
Query: 281 LNARLFMFRHHL--GNTRNTISDENLKELAKRTEGYSGADIS 320
+ + G + S++ L+ +A T + D +
Sbjct: 194 KDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 235
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 48.6 bits (115), Expect = 2e-07
Identities = 42/223 (18%), Positives = 70/223 (31%), Gaps = 34/223 (15%)
Query: 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182
+ DV G E AL + L R+ L G G GK+ +A+ +A
Sbjct: 10 TFADVVGQEHVLTALANGLSL----------GRIH-HAYLFSGTRGVGKTSIARLLAKGL 58
Query: 183 N--------------------NSTFFSVSSSDLVSK-WLGESEKLVKTLFELARAHRPSI 221
N F + D S+ + ++ L+ + R +
Sbjct: 59 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 118
Query: 222 IFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPEL 281
IDE + ++ LL + + + L AT P L I R + AL
Sbjct: 119 YLIDE-VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 177
Query: 282 NARLFMFRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324
R + L+ LA+ EG +S ++
Sbjct: 178 QIRHQLEHIL-NEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 219
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 47.8 bits (113), Expect = 8e-07
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 127 VAGLEAAKEALKEAVILPIKFPQLFTGKRVP--WKGILLFGPPGTGKSYLAKAVATEANN 184
+ G AK A+ A+ + QL R K IL+ GP G GK+ +A+ +A A N
Sbjct: 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-N 74
Query: 185 STFFSVSSSDLV 196
+ F V ++
Sbjct: 75 APFIKVEATKFT 86
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 47.6 bits (112), Expect = 1e-06
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 119 KPNVKWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAV 178
+P ++ + G E K AL + P G+L+FG GTGKS +A+
Sbjct: 1 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRAL 48
Query: 179 AT 180
A
Sbjct: 49 AA 50
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 45.1 bits (105), Expect = 4e-06
Identities = 23/234 (9%), Positives = 59/234 (25%), Gaps = 47/234 (20%)
Query: 129 GLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNST-- 186
EAL + + + + G G GK+ LAK + +
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDVNM---IYGSIGRVGIGKTTLAKFTVKRVSEAAAK 76
Query: 187 ------------FFSVSSSDLVSKWLGE-----------SEKLVKTLFELARAHRPSIIF 223
F + + ++S + + + ++K L + ++
Sbjct: 77 EGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLV 136
Query: 224 IDERID-----RGISNALFLLLSGVGNDMDGILVLGATNIPWVL------------DAAI 266
I + I+ L V ++ + V +
Sbjct: 137 ILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQV 196
Query: 267 RRRFEKRIYIALPELNARLFMFRHHL--GNTRNTISDENLKELAKRTEGYSGAD 318
+ ++++ + + G +L+ ++ G D
Sbjct: 197 ESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 250
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 43.5 bits (101), Expect = 1e-05
Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 18/206 (8%)
Query: 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182
+V G +++ V ++P +L +GPPGTGK+ A+A E
Sbjct: 12 TLDEVYGQNEVITTVRKFV----------DEGKLP--HLLFYGPPGTGKTSTIVALAREI 59
Query: 183 NNST----FFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISNALFL 238
+++SD + ++ + +I +DE D + A
Sbjct: 60 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDE-ADAMTNAAQNA 118
Query: 239 LLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNT 298
L + N L A+ + + + LP+ + + + +
Sbjct: 119 LRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLV-HEKLK 177
Query: 299 ISDENLKELAKRTEGYSGADISTLER 324
+S K L + + G ++ L+
Sbjct: 178 LSPNAEKALIELSNGDMRRVLNVLQS 203
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 41.9 bits (97), Expect = 4e-05
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 19/204 (9%)
Query: 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNS 185
D+ G + + L++ +P +++ G PG GK+ +A E
Sbjct: 16 DIVGNKETIDRLQQIA----------KDGNMPH--MIISGMPGIGKTTSVHCLAHELLGR 63
Query: 186 T-----FFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFIDERIDRGISNALFLLL 240
+ +S D + K + I+ +DE L
Sbjct: 64 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRR 123
Query: 241 SGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFMFRHHLGNTRNTIS 300
+ +++ + R E + +
Sbjct: 124 TMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL--KRLLQIIKLEDVKYT 181
Query: 301 DENLKELAKRTEGYSGADISTLER 324
++ L+ + EG I+ L+
Sbjct: 182 NDGLEAIIFTAEGDMRQAINNLQS 205
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.5 bits (91), Expect = 2e-04
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+LL G PG+GKS +A+A+A SD + ++ + ++ L + + +R
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVH--FHSDDLWGYI-KHGRIDPWLPQSHQQNRMI 63
Query: 221 IIFIDERIDRGISNALFLLLSGVG-----NDMDGILVLGATNIPWVLDAAIRRRFEKR 273
+ + R F++L GV + + A R R
Sbjct: 64 MQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR 121
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 38.2 bits (87), Expect = 7e-04
Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 29/217 (13%)
Query: 123 KWTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEA 182
+V + A LK+ + +P +L +GPPGTGK+ A+ E
Sbjct: 10 NLDEVTAQDHAVTVLKKTL----------KSANLP--HMLFYGPPGTGKTSTILALTKEL 57
Query: 183 NNSTFF----------SVSSSDLVSKWLGESEKLVKT-----LFELARAHRPSIIFIDER 227
+V + + +L + E II +DE
Sbjct: 58 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDE- 116
Query: 228 IDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNARLFM 287
D ++A L + N + + + K + AL NA +
Sbjct: 117 ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRL 176
Query: 288 FRHHLGNTRNTISDENLKELAKRTEGYSGADISTLER 324
D L+ + + G I+ L+
Sbjct: 177 RFIS-EQENVKCDDGVLERILDISAGDLRRGITLLQS 212
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 36.2 bits (82), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFS 189
IL G PG+GKS A+ + +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 36.4 bits (84), Expect = 0.003
Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 42/187 (22%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKL---VKTLFELARAH 217
+L+ G G GK +A+ + ++ S V+ + +L K F A +
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 218 RPSI--------IFIDE----------RIDRGISNALFLLLSGVGNDMDGILVLGATNIP 259
+ +F+DE ++ R I + F L G + +L ATN
Sbjct: 86 KEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN 145
Query: 260 WVLDAAIRR-RFEKRIY-------IALPELNARL-----------FMFRHHLGNTRNTIS 300
+ ++ +F + +Y I +P L R F +
Sbjct: 146 --IKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFT 203
Query: 301 DENLKEL 307
+ L
Sbjct: 204 KSAQELL 210
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.8 bits (81), Expect = 0.003
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 159 KGILLFGPPGTGKSYLAKAVATEA 182
+ + L GPPG GK+ L +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 34.9 bits (79), Expect = 0.006
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+LL GPPG GK A +A + +S+ +L + + E KL A
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLV 59
Query: 221 IIFIDERI 228
+ +
Sbjct: 60 PSDLTNEL 67
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 34.5 bits (78), Expect = 0.008
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+++ G P +GK + + T+ +S+ DL+ + + K E +
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLV 62
Query: 221 IIFI 224
I
Sbjct: 63 PDEI 66
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 34.2 bits (77), Expect = 0.009
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191
++ GP G GKS K +A + +NS +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGD 35
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 34.6 bits (78), Expect = 0.009
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW 199
+ I+L G GKS + + + + + L+
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQ-SVLPEPWLAFGVDSLIEAM 43
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 34.8 bits (78), Expect = 0.009
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 126 DVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVA 179
++ E LK P P +LL+GP GTGK A+
Sbjct: 12 ALSHNEELTNFLKSLSDQPRDLP-----------HLLLYGPNGTGKKTRCMALL 54
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 34.3 bits (78), Expect = 0.010
Identities = 24/177 (13%), Positives = 57/177 (32%), Gaps = 18/177 (10%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFS--VSSSDLVSKWLG--ESEKLVKTLFELARA 216
IL+ G + ++ + + V D + +G + + L
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL 77
Query: 217 HRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYI 276
+ + + + +R A L + + +++ T L I+ R R+ +
Sbjct: 78 YTRKYVIVHD-CERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRV-FRVVV 135
Query: 277 ALPELNARLFMFRHHLGNTRNTIS---------DENLKELAKRTEGYSGADISTLER 324
+P+ L + +G+ + E K A++ G + + LE
Sbjct: 136 NVPKEFRDL--VKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSGLMES-LKVLET 189
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 34.5 bits (79), Expect = 0.010
Identities = 30/192 (15%), Positives = 64/192 (33%), Gaps = 47/192 (24%)
Query: 137 LKEAVILPIKFPQLFT---GKRVPWKG-ILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 192
L+ P +F K+ + I LFGP TGK+ +A+A+A + ++
Sbjct: 79 LELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTN 138
Query: 193 SDLVSKWLGESEKLVKTLFELARAHRPSIIFIDE-RIDRGISNALFLLLSGVGNDMDG-- 249
+ F +I+ +E ++ + + +L G +D
Sbjct: 139 EN----------------FPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKC 182
Query: 250 ----------ILVLGATNIPWVLDAAIRRR-----FEKRIYIALPELNARLFMFRHHLGN 294
++V TN+ V+D + R++ F L +
Sbjct: 183 KSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFK---------FELTRRLDH 233
Query: 295 TRNTISDENLKE 306
++ + +K+
Sbjct: 234 DFGKVTKQEVKD 245
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 34.6 bits (79), Expect = 0.011
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 34/147 (23%)
Query: 155 RVPWKGILLFGPPGTGKSYLAKAVATEANN-----------STFFSVSSSDLVSKWLGES 203
R LL G G GK+ +A+ +A + S +K+ G+
Sbjct: 36 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 95
Query: 204 EKLVKTLFELARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMD------------GIL 251
EK K L + SI+FIDE + + + G +D I
Sbjct: 96 EKRFKALLKQLEQDTNSILFIDE------IHTIIGAGAASGGQVDAANLIKPLLSSGKIR 149
Query: 252 VLGATNIPWVL-----DAAIRRRFEKR 273
V+G+T D A+ RRF+K
Sbjct: 150 VIGSTTYQEFSNIFEKDRALARRFQKI 176
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 34.2 bits (77), Expect = 0.012
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW-------LGESEKLVKTLFEL 213
I + G PG GK + + + + F +S+ DL+ GE K ++
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQI 67
Query: 214 ARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPW 260
+ + D +N L+ G MD + +
Sbjct: 68 VPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVES 114
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 33.8 bits (76), Expect = 0.015
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSV 190
IL+ G PGTGK+ +A+ +A E + V
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQHLEV 37
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 33.3 bits (75), Expect = 0.017
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
++ G PG GKS + + + LG ++ V + R +
Sbjct: 17 VVAVGFPGAGKSTFIQEHL-VSAGYVHVN-------RDTLGSWQRCVSSCQAALRQGKRV 68
Query: 221 II 222
+I
Sbjct: 69 VI 70
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 33.5 bits (75), Expect = 0.018
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAH 217
K + + G +GKS L +A N+T + V + LG E+ ++ A
Sbjct: 8 KTVAILGGESSGKSVLVNKLA-AVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 65
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 33.5 bits (75), Expect = 0.019
Identities = 26/199 (13%), Positives = 48/199 (24%), Gaps = 26/199 (13%)
Query: 146 KFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEK 205
K + R +L+ PG G L A++ S +
Sbjct: 13 KLVASYQAGRGH-HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGC----QL 67
Query: 206 LVKTLFELARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAA 265
+ P +D L + V A + A
Sbjct: 68 MQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANA 127
Query: 266 IRRRFEKR-----IYIALPELNARLFMFRHHLGNTRN----------------TISDENL 304
+ + E+ ++A E L R T+S + L
Sbjct: 128 LLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDAL 187
Query: 305 KELAKRTEGYSGADISTLE 323
+ + G GA ++ +
Sbjct: 188 LAALRLSAGSPGAALALFQ 206
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 33.4 bits (75), Expect = 0.019
Identities = 17/156 (10%), Positives = 46/156 (29%), Gaps = 14/156 (8%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+ + G PG+GK + + + +S+ DL+ + K + + + +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 221 IIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPE 280
+ ++ + +A N LV G ++ + +
Sbjct: 66 PSIVTVKLLKNAIDA---------NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLF 116
Query: 281 LNARLFMFRHHLGNTRNTISDENLKE--LAKRTEGY 314
+ + L + + + KR +
Sbjct: 117 FDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTF 152
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 33.4 bits (75), Expect = 0.021
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHR 218
K I + G PG+GK + + + + +S+ DL+ + K L E+ +
Sbjct: 9 KIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 65
Query: 219 PSIIFI 224
+
Sbjct: 66 LVPLET 71
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 32.6 bits (73), Expect = 0.036
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
I++ G P GK+Y++K +
Sbjct: 5 IVMVGLPARGKTYISKKLT 23
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 32.3 bits (72), Expect = 0.038
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 161 ILLFGPPGTGKSYLAKAVATE 181
+L G G+GKS +A VA +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQ 29
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 32.6 bits (73), Expect = 0.040
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW 199
++L GPPG GK A + + +++ D++
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQ 40
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 32.6 bits (73), Expect = 0.041
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW 199
+L GPPG GK A +A +++ D++
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAM 41
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 32.2 bits (72), Expect = 0.054
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191
++L GP G GKS L K + E ++ FSVS
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVS 33
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 32.3 bits (72), Expect = 0.054
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195
I + GP G GK L KA+A + + S +
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAI 37
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 32.0 bits (71), Expect = 0.056
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 159 KGILLFGPPGTGKSYLAKAVA 179
+ I L GP G GKS + + +A
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLA 23
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 32.2 bits (72), Expect = 0.057
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196
+ + G PG GK + + + +S+ +L+
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELL 36
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 31.8 bits (71), Expect = 0.063
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 161 ILLFGPPGTGKSYLAKAVATEAN 183
ILL G PG GK+ L K +A+++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSG 29
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 31.8 bits (71), Expect = 0.072
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 159 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191
K ++L G G G+ ++ + T+ + + +
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 36
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 31.7 bits (71), Expect = 0.080
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196
+ G PG+GK ++ + +SS DL+
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFE---LKHLSSGDLL 41
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 31.5 bits (70), Expect = 0.082
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 159 KGILLFGPPGTGKSYLAKAVATE 181
+ I + G G G + + + +A
Sbjct: 3 EPIFMVGARGCGMTTVGRELARA 25
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 31.4 bits (70), Expect = 0.094
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS---KWLGESEKLVKTLFELARAH 217
I+L G P GK A+ + + +S+ D++ K E K K + + +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLV 59
Query: 218 RPSIIF 223
++
Sbjct: 60 TDELVI 65
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 31.1 bits (69), Expect = 0.11
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVS 191
I++ GP GTGKS L K + E +S FSVS
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVS 34
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 31.6 bits (70), Expect = 0.11
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFF 188
L+ G TGKS + K E N +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIY 59
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 31.3 bits (69), Expect = 0.12
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFF 188
+FG TGK+ + +A
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTCQLPIDR 53
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 31.0 bits (69), Expect = 0.12
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196
++L G PG GK A+ + +S+ D+
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYG---IPHISTGDMF 35
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 31.0 bits (69), Expect = 0.12
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196
I+L G PG GK A + + +S+ D+
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYG---TPHISTGDMF 35
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2,
NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 83
Score = 29.4 bits (66), Expect = 0.13
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 19 KNKNYEEALKLYTHSVQYFLHALKYEITSAEGKQSIREKCDEYLARAEKLKEYLKKGKKQ 78
YEEA+ + + Y A+K S + S+ + D ++ + ++E K+ K++
Sbjct: 20 AAGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSLELQRDSHMKQLLLIQERWKRAKRE 78
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.7 bits (68), Expect = 0.16
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
I++ G PG GK+ L K +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.4 bits (67), Expect = 0.19
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 153 GKRVPWKG--ILLFGPPGTGKSYLAKAVA 179
G R ++G + L G G GK+ ++ A+
Sbjct: 12 GTRGGFRGCTVWLTGLSGAGKTTVSMALE 40
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 30.3 bits (67), Expect = 0.19
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 159 KGILLFGPPGTGKSYLAKAVATEAN 183
K I+ G G+GKS LA+A+A + +
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLD 25
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.5 bits (67), Expect = 0.19
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
I L G +GK +A+A+
Sbjct: 9 IFLTGYMNSGKDAIARALQ 27
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.8 bits (68), Expect = 0.20
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANN 184
LFG TGKS L +A
Sbjct: 37 TELFGEFRTGKSQLCHTLAVTCQI 60
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.8 bits (68), Expect = 0.20
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195
G G+GK+ + N F +
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAV 71
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.6 bits (69), Expect = 0.20
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 154 KRVPWKG-ILLFGPPGTGKSYLAKAVA 179
K P K ++ GP TGKSY +
Sbjct: 48 KGTPKKNCLVFCGPANTGKSYFGMSFI 74
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 30.6 bits (68), Expect = 0.27
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 23/123 (18%)
Query: 127 VAGLEAAKEALKEAVILPIKFPQLFTGKR------------------VPWKGILLFGPPG 168
V G E AK+ AV K + + ILL GP G
Sbjct: 19 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG 78
Query: 169 TGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEK-----LVKTLFELARAHRPSIIF 223
+GK+ +A+ +A + S ++S + ++GE + L++ + + I+F
Sbjct: 79 SGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVF 138
Query: 224 IDE 226
IDE
Sbjct: 139 IDE 141
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.5 bits (66), Expect = 0.35
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 159 KGILLFGPPGTGKSYLAKAVATE-----ANNSTFFSVSSSDLVS 197
G+LL G G GKS A + + +++ + L
Sbjct: 16 VGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFG 59
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 29.7 bits (65), Expect = 0.37
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 161 ILLFGPPGTGKSYLAKAVATEA 182
FG TGK+ L+ + A
Sbjct: 40 TEAFGEFRTGKTQLSHTLCVTA 61
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 29.6 bits (65), Expect = 0.38
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
+L G PG+GKS + + +A
Sbjct: 4 AVLVGLPGSGKSTIGRRLA 22
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3'
phosphatase, middle domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 195
Score = 29.3 bits (65), Expect = 0.48
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 246 DMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPELNA---RLFMFRHHLGNTRNTISDE 302
D+DG L+ + + + R I L EL A +L +F + +G R + E
Sbjct: 27 DLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAE 86
Query: 303 NLKEL 307
K
Sbjct: 87 VFKGK 91
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.2 bits (64), Expect = 0.49
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 6/128 (4%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTF------FSVSSSDLVSKWLGESEKLVKTLFELA 214
+ GTGK+ L K + + D+ E +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 215 RAHRPSIIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRI 274
A + + E D + FL + +D ILV G + R R
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRP 124
Query: 275 YIALPELN 282
+ + +
Sbjct: 125 EELVIDRH 132
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 28.7 bits (63), Expect = 0.50
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW 199
L P G+GKS A S +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGF 49
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.1 bits (64), Expect = 0.54
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 161 ILLFGPPGTGKSYLAKAVATEA 182
IL G GTGK+ L A
Sbjct: 29 ILATGATGTGKTLLVSRFVENA 50
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 29.2 bits (64), Expect = 0.56
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
L P G GKS LA +A
Sbjct: 32 GALVSPGGAGKSMLALQLA 50
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.3 bits (65), Expect = 0.61
Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 38/185 (20%)
Query: 161 ILLFGPPGTGKSYLAKAVA---------TEANNSTFFSVSSSDLVS--KWLGESEKLVKT 209
+L G PG GK+ + + +A S+ L++ K+ GE E+ +K
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 210 LFELARAHRPSIIFIDERIDRGISNALFLLLSGVGNDMD------------GILVLGATN 257
+ + + +I + + + +D + ++GAT
Sbjct: 106 VIQEVVQSQGEVILFIDELH------TVVGAGKAEGAVDAGNMLKPALARGELRLIGATT 159
Query: 258 IPW----VLDAAIRRRFEKRIYIALPELNARLFMFR----HHLGNTRNTISDENLKELAK 309
+ D A+ RRF+ +Y+ P + + + R + + ISD + A
Sbjct: 160 LDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT 218
Query: 310 RTEGY 314
+ Y
Sbjct: 219 LSHRY 223
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 28.4 bits (62), Expect = 0.76
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSD 194
++L GP GKS + + + E + FSVS++
Sbjct: 5 VVLSGPSAVGKSTVVRCLR-ERIPNLHFSVSATT 37
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 28.3 bits (63), Expect = 0.77
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 159 KGILLFGPPGTGKSYLA 175
G+L+ G G GKS A
Sbjct: 15 LGVLITGDSGVGKSETA 31
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.4 bits (63), Expect = 0.82
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 159 KGILLFGPPGTGKSYLA 175
G+L+ G G GKS A
Sbjct: 16 VGVLITGDSGIGKSETA 32
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 28.6 bits (64), Expect = 0.87
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 150 LFTGKRV------PWKG--ILLFGPPGTGKSYLAKAVA 179
L TG +V KG I LFG G GK+ L +
Sbjct: 52 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELI 89
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 28.4 bits (62), Expect = 1.0
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 165 GPPGTGKSYLAKAVATEANNSTFFSVSSSDL 195
GP +GKS +AK +A + F + + +
Sbjct: 10 GPASSGKSTVAKIIAKDFG---FTYLDTGAM 37
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.7 bits (63), Expect = 1.1
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 151 FTGKRVPW----KGILLFGPPGTGKSYLAKAVATEA 182
G +P + +L+ G GTGKS L + +A
Sbjct: 39 VAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTG 74
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.0 bits (61), Expect = 1.2
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 159 KGILLFGPPGTGKSYLAKAVA 179
K +++ G PG G + ++
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAM 22
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.4 bits (62), Expect = 1.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 161 ILLFGPPGTGKSYLAKAVATEA 182
L+ G GTGK+ +
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYNG 50
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 28.1 bits (61), Expect = 1.2
Identities = 20/149 (13%), Positives = 41/149 (27%), Gaps = 12/149 (8%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+FG G+GK+ LA +A + G V +
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQ------------LPPEEGGLNGSVIWIDTENTFRPER 86
Query: 221 IIFIDERIDRGISNALFLLLSGVGNDMDGILVLGATNIPWVLDAAIRRRFEKRIYIALPE 280
I I + L + + + ++L + + R K + +
Sbjct: 87 IREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 146
Query: 281 LNARLFMFRHHLGNTRNTISDENLKELAK 309
+ R R ++L +L +
Sbjct: 147 SHFRSEYIGRGALAERQQKLAKHLADLHR 175
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 27.8 bits (61), Expect = 1.8
Identities = 13/93 (13%), Positives = 21/93 (22%), Gaps = 9/93 (9%)
Query: 138 KEAVILPIKFPQLFTGKRV--PWKG--ILLFGPPGTGKSYLAKAVATEANNSTFFSVS-- 191
K I P K Q G G + + + S
Sbjct: 12 KALRINPAKTCQPVGAMYAALGIHNCLPHSHGSQGCCSYHRTVLSRHFKEPAMASTSSFT 71
Query: 192 SSDLVSKWLGESEKLVKTLFELARAHRPSIIFI 224
V G + + + + P II +
Sbjct: 72 EGASV---FGGGSNIKTAVKNIFSLYNPDIIAV 101
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 27.2 bits (60), Expect = 2.0
Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 29/148 (19%)
Query: 159 KGILLFGPPGTGKSYLA---------KAVATEANNSTFFSVSSSDLV--SKWLGESEKLV 207
+L G PG GK+ + V ++ LV +K+ GE E+ +
Sbjct: 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERL 103
Query: 208 KTLFELARAHRPSIIFIDERIDR--------GISNALFLLLSGVGNDMDGILVLGATNIP 259
K + ++I + + G +A +L + + +GAT +
Sbjct: 104 KGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATTLD 161
Query: 260 WVL-----DAAIRRRFEKRIYIALPELN 282
DAA+ RRF+K + + E +
Sbjct: 162 EYRQYIEKDAALERRFQK---VFVAEPS 186
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.5 bits (60), Expect = 2.0
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSV 190
I L G +GKS LA + +
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHA 56
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.5 bits (60), Expect = 2.2
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNST--------FFSVSSSDLVSKWLGESEKLVKTLFE 212
+ L G G+GKS +A ++++ + S + S + ++ L+ E
Sbjct: 47 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 106
Query: 213 LARAHRPSIIFIDERIDR 230
+ PS+ + + +
Sbjct: 107 DDLLNFPSVEHVTSVVLK 124
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 27.7 bits (61), Expect = 2.2
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 15/110 (13%)
Query: 124 WTDVAGLEAAKEALKEAVILPIKFPQLFTGKRVPWKGI-----LLFGPPGTGKSYLAKAV 178
WT + + + P K Q G + G G ++
Sbjct: 45 WTTTKEYQELNFQREALTVNPAKACQPLGAVLCAL-GFEKTMPYVHGSQGC--VAYFRSY 101
Query: 179 AT----EANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPSIIFI 224
E + S++ V G + + L ++P +I +
Sbjct: 102 FNRHFREPVSCVSDSMTEDAAV---FGGQQNMKDGLQNCKATYKPDMIAV 148
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.3 bits (59), Expect = 2.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 159 KGILLFGPPGTGKSYLAKAVA 179
K ++ G PG GKS + V
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVK 22
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 27.3 bits (59), Expect = 2.4
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSV 190
I++ G GKS + A + + V
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.1 bits (59), Expect = 2.6
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTF-FSVS 191
++ P G GKS L +A+ SVS
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS 36
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 26.6 bits (58), Expect = 4.2
Identities = 16/59 (27%), Positives = 22/59 (37%)
Query: 144 PIKFPQLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE 202
P +L G R K L G GTGK++ V + N T + L + E
Sbjct: 17 PQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSE 75
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.3 bits (56), Expect = 4.3
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANN 184
+ + G +GK+ LA ++
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLRE 48
>d2rd1a1 b.38.1.6 (A:22-73) Putative outer membrane lipoprotein
STM1585 {Salmonella typhimurium [TaxId: 90371]}
Length = 52
Score = 23.9 bits (52), Expect = 5.2
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 81 KDGESRTKDDKKESDEDDS----EDPDKKKMQAN 110
K+G++ K + D++ D + + + N
Sbjct: 8 KNGQTIVTQGKPQLDKETGMTSYTDQEGNQREIN 41
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 26.3 bits (57), Expect = 5.3
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 152 TGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFF 188
TG + P I GP G+GKS+ + +
Sbjct: 22 TGNKCPLF-IFFSGPQGSGKSFTSIQIYNHLMEKYGG 57
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 26.3 bits (58), Expect = 5.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 161 ILLFGPPGTGKSYLA 175
L+ G TGK+ +A
Sbjct: 71 ELIIGDRQTGKTSIA 85
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.8 bits (56), Expect = 6.1
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLV 196
+ L G G GK+ L + + + + LV
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV 71
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae
[TaxId: 727]}
Length = 205
Score = 26.0 bits (56), Expect = 6.2
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFELARAHRPS 220
+ L G G+GK+ +A + +D+V++ + + L ++
Sbjct: 5 VGLTGGIGSGKTTIANLFTDLG-----VPLVDADVVAREVVAKDS--PLLSKIVEHFGAQ 57
Query: 221 IIFIDERIDR 230
I+ ++R
Sbjct: 58 ILTEQGELNR 67
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 26.4 bits (57), Expect = 6.4
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 161 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE 202
+ L G GTGK+ V + L ++ E
Sbjct: 31 VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAE 72
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 26.1 bits (57), Expect = 6.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
L+ PP GK+ L + +A
Sbjct: 46 GLIVAPPKAGKTMLLQNIA 64
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.9 bits (55), Expect = 7.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 161 ILLFGPPGTGKSYLAKAVA 179
L+ G G+GKS L A+
Sbjct: 26 NLIIGQNGSGKSSLLDAIL 44
>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 182
Score = 25.3 bits (55), Expect = 8.7
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 112 EGAIVMEKPNVKWTDVAGLE-AAKEALKEAVILPIKFPQLFTGKRVP 157
G + ++ GL+ A E K I I+ P L + +++P
Sbjct: 136 VGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMP 182
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 25.4 bits (55), Expect = 9.8
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 147 FPQLFTGKRVPWKGIL 162
FP L T K+VP+ I
Sbjct: 44 FP-LLTTKKVPFGLIK 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,210,094
Number of extensions: 57948
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 125
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.1 bits)