BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3809
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens
GN=VPS4B PE=1 SV=2
Length = 444
Score = 168 bits (426), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 90/110 (81%)
Query: 3 SYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEM 62
YSGADISI+VRDALMQPVR VQSATHF + GPS DP+ VDDLLTPCSP PGA+EM
Sbjct: 335 GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEM 394
Query: 63 NFMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112
+MDVP DKLLEP VSM +L+SL +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 395 TWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
>sp|Q5R658|VPS4B_PONAB Vacuolar protein sorting-associated protein 4B OS=Pongo abelii
GN=VPS4B PE=2 SV=1
Length = 444
Score = 168 bits (426), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 90/110 (81%)
Query: 3 SYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEM 62
YSGADISI+VRDALMQPVR VQSATHF + GPS DP+ VDDLLTPCSP PGA+EM
Sbjct: 335 GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEM 394
Query: 63 NFMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112
+MDVP DKLLEP VSM +L+SL +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 395 TWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
>sp|P46467|VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B OS=Mus musculus
GN=Vps4b PE=1 SV=2
Length = 444
Score = 162 bits (411), Expect = 4e-40, Method: Composition-based stats.
Identities = 77/109 (70%), Positives = 91/109 (83%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRDALMQPVR VQSATHF + GPS DP+ V+DLLTPCSP PGA+EM
Sbjct: 336 YSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMT 395
Query: 64 FMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112
+MDVP DKLLEP VSM +L+SL ++KPTVN+ D++KL+KF EDFGQEG
Sbjct: 396 WMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQEG 444
>sp|Q0VD48|VPS4B_BOVIN Vacuolar protein sorting-associated protein 4B OS=Bos taurus
GN=VPS4B PE=2 SV=1
Length = 444
Score = 162 bits (409), Expect = 7e-40, Method: Composition-based stats.
Identities = 77/109 (70%), Positives = 90/109 (82%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRDALMQPVR VQSATHF + GPS DP+ VDDLLTPCSP PGA+EM
Sbjct: 336 YSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNNIVDDLLTPCSPGDPGAIEMT 395
Query: 64 FMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112
+MDVP DKLLEP V M +L+SL ++KPTVN+ D++KL+KF EDFGQEG
Sbjct: 396 WMDVPGDKLLEPVVCMSDMLRSLSSTKPTVNEHDLLKLKKFTEDFGQEG 444
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus
GN=Vps4a PE=2 SV=1
Length = 437
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/109 (67%), Positives = 89/109 (81%)
Query: 3 SYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEM 62
YSGADISI+VRD+LMQPVR VQSATHF + GPS +PS +DDLLTPCSP PGA+EM
Sbjct: 328 GYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEM 387
Query: 63 NFMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQE 111
+MDVP DKLLEP V M +L+SL T++PTVN DD++K++KF EDFGQE
Sbjct: 388 TWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/109 (67%), Positives = 89/109 (81%)
Query: 3 SYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEM 62
YSGADISI+VRD+LMQPVR VQSATHF + GPS +PS +DDLLTPCSP PGA+EM
Sbjct: 328 GYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEM 387
Query: 63 NFMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQE 111
+MDVP DKLLEP V M +L+SL T++PTVN DD++K++KF EDFGQE
Sbjct: 388 TWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens
GN=VPS4A PE=1 SV=1
Length = 437
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/109 (67%), Positives = 89/109 (81%)
Query: 3 SYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEM 62
YSGADISI+VRD+LMQPVR VQSATHF + GPS +PS +DDLLTPCSP PGA+EM
Sbjct: 328 GYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEM 387
Query: 63 NFMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQE 111
+MDVP DKLLEP V M +L+SL T++PTVN DD++K++KF EDFGQE
Sbjct: 388 TWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1
SV=1
Length = 437
Score = 112 bits (280), Expect = 7e-25, Method: Composition-based stats.
Identities = 55/112 (49%), Positives = 80/112 (71%), Gaps = 12/112 (10%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDD---LLTPCSPSTPGAV 60
YSG+DI++VV+DALMQP+R +QSATHF S T DD LTPCSP GA+
Sbjct: 334 YSGSDIAVVVKDALMQPIRKIQSATHFKDVS---------TEDDETRKLTPCSPGDDGAI 384
Query: 61 EMNFMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112
EM++ D+ +D+L EP +++ LK++++++PTVN+DD++K +F DFGQEG
Sbjct: 385 EMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 436
>sp|Q54PT2|VPS4_DICDI Vacuolar protein sorting-associated protein 4 OS=Dictyostelium
discoideum GN=vps4 PE=3 SV=1
Length = 444
Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/109 (50%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSG+DI +V+DA+MQPVR VQ ATHF + PS DPS + D +TPCSP P A EM
Sbjct: 336 YSGSDIGSLVKDAIMQPVRAVQCATHFKQIRAPSREDPS-VMTDYVTPCSPGDPLAQEMT 394
Query: 64 FMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112
+MD+ KL EP +++ LKSL KP+VN D+ + +F DFGQ+G
Sbjct: 395 WMDIDPTKLKEPEITIADCLKSLRVIKPSVNKADLDRYVEFTNDFGQDG 443
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps4 PE=3 SV=1
Length = 432
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 6/109 (5%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSG+DISIVVRDA+M+PVR + +ATHF V +K+ L+TPCSP P A E +
Sbjct: 330 YSGSDISIVVRDAIMEPVRRIHTATHF------KEVYDNKSNRTLVTPCSPGDPDAFESS 383
Query: 64 FMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112
+++V + ++EP +++ ++ KPT+N D+ K +F +DFG EG
Sbjct: 384 WLEVNPEDIMEPKLTVRDFYSAVRKVKPTLNAGDIEKHTQFTKDFGAEG 432
>sp|O43078|ALF1_SCHPO ATPase-like fidgetin OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=alf1 PE=1 SV=1
Length = 660
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 38/108 (35%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSG+DI+ + +DA M P+R + D LLT + EM
Sbjct: 590 YSGSDITALAKDAAMGPLRNLG--------------------DALLT-------TSAEM- 621
Query: 64 FMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQE 111
PP+S++H SL T +P+V+ + + + ++ + FG +
Sbjct: 622 ----------IPPISLNHFKASLRTIRPSVSQEGIHRYEEWNKQFGSQ 659
>sp|A9ZPC9|HMEN_LYMST Homeobox protein engrailed OS=Lymnaea stagnalis GN=EN PE=2 SV=1
Length = 799
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 24 VQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMHHIL 83
V S+TH V+ P PV + D+L T SP+ G F D+ +LLE VS H +
Sbjct: 105 VMSSTHLVKRECP-PVQGADLSDNLATASSPAHTGKGYTPFEDICLKQLLE--VSRHKLF 161
Query: 84 KSLE 87
+SLE
Sbjct: 162 RSLE 165
>sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit A1 OS=Strongylocentrotus
purpuratus GN=KATNA1 PE=1 SV=1
Length = 516
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 32/109 (29%)
Query: 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAV 60
M YSGADI+ V RDA M +R R G P +
Sbjct: 438 MDGYSGADITNVCRDASMMAMRR--------RIQGLRPEE-------------------- 469
Query: 61 EMNFMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFG 109
+P ++L +P +L + SK +V +D+VK +ME+FG
Sbjct: 470 ---IRHIPKEELNQPSTPADFLLALQKVSK-SVGKEDLVKYMAWMEEFG 514
>sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus
GN=Katnal2 PE=2 SV=2
Length = 539
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 4 YSGADISIVVRDALMQPVRLVQS 26
YSG+DI +V R+A M+PVR + S
Sbjct: 464 YSGSDIKLVCREAAMRPVRKIFS 486
>sp|P39955|SAP1_YEAST Protein SAP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SAP1 PE=1 SV=1
Length = 897
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 50/115 (43%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSG+DI+ + +DA M P+R DL
Sbjct: 826 YSGSDITSLAKDAAMGPLR------------------------DL--------------- 846
Query: 64 FMDVPSDKLLEP------PVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112
DKLLE P+ + SL KP+V+ D +VK K+ FG G
Sbjct: 847 -----GDKLLETEREMIRPIGLVDFKNSLVYIKPSVSQDGLVKYEKWASQFGSSG 896
>sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens
GN=KATNAL2 PE=1 SV=3
Length = 538
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPS----PVDPSKTVD--DLLTPCSPS 55
YSG+DI +V R+A M+PVR + A ++ +D T D D+LT PS
Sbjct: 463 YSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLTHTKPS 520
>sp|Q5ZLW2|ORAI2_CHICK Protein orai-2 OS=Gallus gallus GN=ORAI2 PE=2 SV=1
Length = 257
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 38 PVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMHHILKSLETSK 90
PVDPS TP S PG M++ D LE S HH +++L K
Sbjct: 8 PVDPS-------TPACCSEPGTKGMDYRDWVRRSYLELVTSNHHSVQALSWRK 53
>sp|Q9CP22|KPRS_PASMU Ribose-phosphate pyrophosphokinase OS=Pasteurella multocida (strain
Pm70) GN=prs PE=3 SV=1
Length = 315
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 63 NFMDVPSDKLLEPPVSMHHILKSLETSKPTV 93
F DVP D + PV +H +LK ++ P V
Sbjct: 137 GFFDVPVDNVFGSPVLVHDMLKKIDMQNPIV 167
>sp|Q6PIW4|FIGL1_HUMAN Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2
Length = 674
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 SYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVD 46
++SGAD++ + R+A + P+R +Q+A + T P V P +D
Sbjct: 602 AFSGADMTQLCREASLGPIRSLQTAD--IATITPDQVRPIAYID 643
>sp|Q47AF2|PYRF_DECAR Orotidine 5'-phosphate decarboxylase OS=Dechloromonas aromatica
(strain RCB) GN=pyrF PE=3 SV=1
Length = 270
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 35 GPSPVDPSKTVDD--LLTPCSPSTPGAVEMNFMDVPSDKLLE 74
G VDP D ++ C S PG ++ F+DV +KL E
Sbjct: 126 GRDSVDPYLAYPDKGVILLCRTSNPGGSDLQFLDVGGEKLYE 167
>sp|Q9P3U2|YKX4_SCHPO Uncharacterized AAA domain-containing protein C328.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC328.04 PE=3 SV=1
Length = 741
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLT 50
YSG+D++ + +DA M P+R + + F + P++ +DD T
Sbjct: 670 YSGSDLTALAKDAAMGPLRSLGESLLFTKMESIRPIN----LDDFKT 712
>sp|A1KBR9|PYRF_AZOSB Orotidine 5'-phosphate decarboxylase OS=Azoarcus sp. (strain BH72)
GN=pyrF PE=3 SV=1
Length = 270
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 35 GPSPVDPSKTVDD--LLTPCSPSTPGAVEMNFMDVPSDKLLE 74
G VDP D ++ C S PG ++ F+DV +KL E
Sbjct: 126 GRDSVDPYLAYPDKGVILLCRTSNPGGSDLQFLDVGGEKLYE 167
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 77 VSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110
+ H +K+LE KP+V+ +DM K +++G+
Sbjct: 855 IKKEHFMKALEKIKPSVSKEDMRVYEKLAQEYGR 888
>sp|P44328|KPRS_HAEIN Ribose-phosphate pyrophosphokinase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=prs PE=3
SV=1
Length = 315
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 63 NFMDVPSDKLLEPPVSMHHILKSLETSKPTV 93
F DVP D + PV +H ILK + P V
Sbjct: 137 GFFDVPVDNVFGSPVLIHDILKKSDLKNPIV 167
>sp|Q48735|HSLU_LACLE ATP-dependent protease ATPase subunit HslU OS=Lactobacillus
leichmannii GN=hslU PE=3 SV=2
Length = 464
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTP 51
Y G D+ +VRD + VR+V+ FV+ G + +KT+ LL P
Sbjct: 91 YVGRDVESMVRDLANEAVRIVEK-EEFVKVEGQAIRQANKTLVRLLVP 137
>sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus
tropicalis GN=katnal2 PE=2 SV=1
Length = 542
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 4 YSGADISIVVRDALMQPVRLVQSA 27
YSG+DI +V ++A M+PVR + A
Sbjct: 467 YSGSDIRLVCKEAAMRPVRKIFDA 490
>sp|Q3B8D5|KATL2_XENLA Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis
GN=katnal2 PE=2 SV=1
Length = 505
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 4 YSGADISIVVRDALMQPVRLVQSA 27
YSG+DI +V ++A M+PVR + A
Sbjct: 430 YSGSDIRLVCKEAAMRPVRKIFDA 453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,195,941
Number of Sequences: 539616
Number of extensions: 1626922
Number of successful extensions: 4629
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4599
Number of HSP's gapped (non-prelim): 42
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)