Query psy3809
Match_columns 112
No_of_seqs 152 out of 1042
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 17:58:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0739|consensus 100.0 2.3E-31 5E-36 204.2 5.3 109 1-112 331-439 (439)
2 PF09336 Vps4_C: Vps4 C termin 99.9 3.1E-26 6.7E-31 139.2 2.3 62 48-109 1-62 (62)
3 KOG0738|consensus 99.8 1.5E-20 3.2E-25 148.2 7.7 79 1-111 413-491 (491)
4 TIGR01243 CDC48 AAA family ATP 99.5 5.3E-14 1.2E-18 118.5 9.0 79 1-110 653-731 (733)
5 KOG0730|consensus 99.5 9.6E-14 2.1E-18 114.9 6.8 60 1-107 633-692 (693)
6 KOG0740|consensus 99.4 5.2E-14 1.1E-18 112.4 3.4 76 1-112 352-427 (428)
7 KOG0733|consensus 99.3 2.5E-12 5.4E-17 106.4 7.8 75 2-109 715-789 (802)
8 KOG0737|consensus 99.3 2.2E-12 4.8E-17 101.2 6.7 89 1-112 292-384 (386)
9 KOG0736|consensus 98.9 5.1E-09 1.1E-13 88.8 7.4 76 2-109 877-952 (953)
10 COG0464 SpoVK ATPases of the A 98.9 2.3E-09 5E-14 86.7 5.2 50 1-104 443-492 (494)
11 CHL00195 ycf46 Ycf46; Provisio 98.9 7.3E-09 1.6E-13 84.5 7.5 57 1-107 425-483 (489)
12 COG1222 RPT1 ATP-dependent 26S 98.7 2.6E-08 5.7E-13 78.6 4.7 23 1-23 353-375 (406)
13 KOG0733|consensus 98.6 9.9E-08 2.2E-12 79.6 6.6 27 1-27 392-418 (802)
14 PRK03992 proteasome-activating 98.5 2.1E-07 4.6E-12 73.7 5.1 47 1-96 333-379 (389)
15 PTZ00454 26S protease regulato 98.4 2.8E-07 6E-12 73.6 4.8 23 1-23 347-369 (398)
16 PTZ00361 26 proteosome regulat 98.2 2.8E-06 6E-11 68.7 5.2 23 1-23 385-407 (438)
17 TIGR01242 26Sp45 26S proteasom 98.2 3.4E-06 7.3E-11 66.0 5.5 23 1-23 324-346 (364)
18 KOG0741|consensus 98.1 6.9E-06 1.5E-10 68.1 6.2 69 1-103 436-506 (744)
19 TIGR01243 CDC48 AAA family ATP 98.0 1.7E-05 3.7E-10 67.4 6.1 63 1-93 377-439 (733)
20 PRK10733 hflB ATP-dependent me 97.9 1.8E-05 3.9E-10 66.6 5.4 23 1-23 353-375 (644)
21 TIGR01241 FtsH_fam ATP-depende 97.9 2.5E-05 5.5E-10 63.6 6.0 23 1-23 256-278 (495)
22 CHL00206 ycf2 Ycf2; Provisiona 97.9 1.6E-05 3.4E-10 73.3 5.1 23 1-23 1838-1860(2281)
23 CHL00176 ftsH cell division pr 97.7 0.00011 2.4E-09 61.9 7.3 23 1-23 384-406 (638)
24 KOG0731|consensus 97.7 7.3E-05 1.6E-09 64.0 5.4 23 1-23 514-536 (774)
25 KOG0726|consensus 97.6 4.6E-05 1E-09 59.6 3.1 23 2-24 388-410 (440)
26 KOG0730|consensus 97.3 0.00022 4.7E-09 60.1 3.9 23 1-23 382-404 (693)
27 KOG0735|consensus 97.0 0.0018 3.8E-08 55.7 6.2 27 1-27 866-892 (952)
28 COG0465 HflB ATP-dependent Zn 97.0 0.00059 1.3E-08 57.2 2.8 23 1-23 351-373 (596)
29 TIGR03689 pup_AAA proteasome A 96.9 0.0041 8.9E-08 51.4 7.6 25 1-25 435-459 (512)
30 KOG0734|consensus 96.8 0.0017 3.6E-08 54.4 4.3 22 1-22 502-523 (752)
31 KOG0727|consensus 96.7 0.0022 4.8E-08 49.6 4.1 22 2-23 358-379 (408)
32 KOG0728|consensus 96.7 0.0014 3E-08 50.6 2.9 22 2-23 350-371 (404)
33 KOG0732|consensus 96.3 0.0034 7.3E-08 55.6 3.3 62 1-95 470-531 (1080)
34 KOG0652|consensus 95.9 0.0049 1.1E-07 47.9 2.0 23 1-23 373-395 (424)
35 COG0464 SpoVK ATPases of the A 95.3 0.04 8.7E-07 44.7 5.5 25 1-25 181-205 (494)
36 COG1223 Predicted ATPase (AAA+ 94.2 0.07 1.5E-06 41.5 4.0 23 1-23 315-338 (368)
37 KOG0729|consensus 94.2 0.05 1.1E-06 42.6 3.2 21 3-23 381-401 (435)
38 KOG0735|consensus 91.9 0.27 5.9E-06 42.8 4.6 24 1-24 605-628 (952)
39 KOG0651|consensus 90.3 0.082 1.8E-06 41.9 -0.0 23 1-23 334-356 (388)
40 PF08400 phage_tail_N: Prophag 59.3 14 0.00031 25.5 3.3 32 74-107 81-112 (134)
41 KOG0736|consensus 54.9 15 0.00032 32.7 3.4 27 1-27 594-620 (953)
42 KOG0742|consensus 51.2 9.8 0.00021 31.7 1.6 14 1-14 573-586 (630)
43 PF13833 EF-hand_8: EF-hand do 49.6 23 0.0005 19.4 2.7 25 76-100 4-29 (54)
44 COG1067 LonB Predicted ATP-dep 45.1 47 0.001 28.7 4.9 20 75-94 385-404 (647)
45 PF12518 DUF3721: Protein of u 45.0 11 0.00024 20.0 0.7 9 46-54 23-31 (34)
46 cd00051 EFh EF-hand, calcium b 44.1 48 0.001 17.3 3.4 26 75-100 15-40 (63)
47 PF01823 MACPF: MAC/Perforin d 42.0 36 0.00079 23.8 3.3 33 77-110 45-77 (212)
48 PF12703 plasmid_Toxin: Toxin 41.8 16 0.00036 22.5 1.2 17 76-92 56-72 (74)
49 TIGR03689 pup_AAA proteasome A 41.0 22 0.00047 29.8 2.2 20 1-20 391-410 (512)
50 PF02791 DDT: DDT domain; Int 40.3 25 0.00054 20.5 1.9 22 72-93 21-42 (61)
51 TIGR03015 pepcterm_ATPase puta 34.5 1.1E+02 0.0023 22.3 4.9 16 75-90 252-267 (269)
52 cd07978 TAF13 The TATA Binding 33.7 81 0.0018 20.1 3.6 31 76-108 54-84 (92)
53 COG1510 Predicted transcriptio 32.7 40 0.00088 24.4 2.3 31 74-105 39-69 (177)
54 cd08318 Death_NMPP84 Death dom 32.0 1.3E+02 0.0028 18.7 5.1 21 3-23 29-55 (86)
55 cd07358 harmonin_N_like_1 Doma 31.3 35 0.00075 21.4 1.5 19 85-103 56-74 (78)
56 PF02269 TFIID-18kDa: Transcri 30.9 30 0.00066 22.1 1.3 32 75-108 53-84 (93)
57 PF08831 MHCassoc_trimer: Clas 30.8 27 0.00058 21.7 0.9 29 79-107 24-52 (72)
58 PF06798 PrkA: PrkA serine pro 28.9 1.6E+02 0.0034 22.4 5.0 23 82-105 68-90 (254)
59 PF10391 DNA_pol_lambd_f: Fing 28.4 65 0.0014 18.4 2.3 25 78-106 25-52 (52)
60 cd08316 Death_FAS_TNFRSF6 Deat 28.1 1.3E+02 0.0028 19.4 3.9 36 77-112 32-67 (97)
61 smart00457 MACPF membrane-atta 27.3 94 0.002 22.0 3.4 32 75-110 20-51 (194)
62 smart00021 DAX Domain present 26.6 42 0.00091 21.3 1.3 14 76-89 27-40 (83)
63 PF13625 Helicase_C_3: Helicas 26.4 1.8E+02 0.0038 19.2 4.5 34 77-110 55-89 (129)
64 PHA01817 hypothetical protein 23.8 1.1E+02 0.0024 24.4 3.4 30 2-31 208-237 (479)
65 COG2028 Uncharacterized conser 23.5 87 0.0019 21.5 2.5 34 79-112 64-99 (145)
66 CHL00132 psaF photosystem I su 23.3 34 0.00073 24.9 0.5 31 82-112 49-91 (185)
67 PHA02754 hypothetical protein; 22.9 23 0.00051 21.2 -0.3 21 75-95 9-29 (67)
68 PF00755 Carn_acyltransf: Chol 22.8 1.1E+02 0.0023 25.8 3.4 37 73-110 6-42 (591)
69 PF01325 Fe_dep_repress: Iron 22.2 28 0.0006 20.3 -0.1 27 75-102 21-47 (60)
70 TIGR02928 orc1/cdc6 family rep 22.0 1E+02 0.0022 23.6 3.0 14 96-109 312-325 (365)
71 PF04614 Pex19: Pex19 protein 21.8 2.8E+02 0.006 20.8 5.2 18 86-103 156-173 (248)
72 PF04852 DUF640: Protein of un 21.4 1.7E+02 0.0037 20.2 3.6 32 79-110 27-63 (132)
73 PTZ00184 calmodulin; Provision 21.0 1.4E+02 0.0029 19.1 3.1 27 75-101 99-125 (149)
74 PF12661 hEGF: Human growth fa 20.9 17 0.00038 14.9 -0.9 7 2-8 6-12 (13)
75 PF05621 TniB: Bacterial TniB 20.8 1.1E+02 0.0023 24.0 2.8 22 1-23 251-272 (302)
76 PF08542 Rep_fac_C: Replicatio 20.6 1.1E+02 0.0023 18.5 2.3 18 2-19 33-50 (89)
77 PF12239 DUF3605: Protein of u 20.4 91 0.002 21.9 2.2 17 94-110 21-37 (158)
78 PHA00455 hypothetical protein 20.4 44 0.00095 21.2 0.5 19 76-94 47-65 (85)
79 TIGR02902 spore_lonB ATP-depen 20.2 1.5E+02 0.0032 24.7 3.7 14 76-89 319-332 (531)
No 1
>KOG0739|consensus
Probab=99.97 E-value=2.3e-31 Score=204.19 Aligned_cols=109 Identities=72% Similarity=1.143 Sum_probs=101.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|||||||||+.+||+|+|+|||+++.++||+++.+.+. . -++++..+||+++++++++|+|++++.+++..|+|||.
T Consensus 331 TeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~--~-~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~ 407 (439)
T KOG0739|consen 331 TEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSN--P-SEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMR 407 (439)
T ss_pred cCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCC--h-hhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHH
Confidence 89999999999999999999999999999999876541 1 12678899999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~g 112 (112)
||..+|.++||+|+..||.+.++|++.||++|
T Consensus 408 D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqEg 439 (439)
T KOG0739|consen 408 DFLKSLSRTKPTVNEDDLLKHEKFTEDFGQEG 439 (439)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999998
No 2
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=99.92 E-value=3.1e-26 Score=139.16 Aligned_cols=62 Identities=47% Similarity=0.969 Sum_probs=57.1
Q ss_pred ccccCCCCCCccccccccCCCCCCCCCCCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 48 LLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 48 ~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
+|+||++++||+++|++++++.+++..|+||++||+.||+++||||++++|.+|++|+++||
T Consensus 1 ~~~PCs~~dp~a~~m~~~di~~~~l~~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 1 MYTPCSPSDPGAVEMSLMDIPAEKLKEPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp -EEEESSSSTTEEEEEGTGS-GGGB-HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CccCCCCCCccchhccHhhcCcccccCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 48999999999999999999999999999999999999999999999999999999999998
No 3
>KOG0738|consensus
Probab=99.83 E-value=1.5e-20 Score=148.17 Aligned_cols=79 Identities=28% Similarity=0.413 Sum_probs=63.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
+||||||||.++||+|+|+++|+.+...--..+ ..+..+.+. -||+++
T Consensus 413 ~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei-------------------------------~~lakE~~~-~pv~~~ 460 (491)
T KOG0738|consen 413 SEGYSGADITNVCREASMMAMRRKIAGLTPREI-------------------------------RQLAKEEPK-MPVTNE 460 (491)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHh-------------------------------hhhhhhccc-cccchh
Confidence 689999999999999999999997643110000 012223333 679999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQE 111 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~ 111 (112)
||+.||++++|||+.+++.+|++|..+||+.
T Consensus 461 Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 461 DFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred hHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999974
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.51 E-value=5.3e-14 Score=118.51 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=61.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|++.++|+.+......... +...+....+.|+++
T Consensus 653 t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~i~~~ 701 (733)
T TIGR01243 653 TEGYTGADIEAVCREAAMAALRESIGSPAKEKLE-------------------------------VGEEEFLKDLKVEMR 701 (733)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh-------------------------------cccccccccCcccHH
Confidence 7999999999999999999999975432100000 000011224679999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
||++||++++||++++++.+|++|.++|+.
T Consensus 702 ~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 702 HFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999985
No 5
>KOG0730|consensus
Probab=99.47 E-value=9.6e-14 Score=114.93 Aligned_cols=60 Identities=22% Similarity=0.403 Sum_probs=54.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+|||+|++.++|+.++ ...|+.+
T Consensus 633 T~g~SGAel~~lCq~A~~~a~~e~i~-----------------------------------------------a~~i~~~ 665 (693)
T KOG0730|consen 633 TEGYSGAEIVAVCQEAALLALRESIE-----------------------------------------------ATEITWQ 665 (693)
T ss_pred hccCChHHHHHHHHHHHHHHHHHhcc-----------------------------------------------cccccHH
Confidence 89999999999999999999999542 2458899
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMED 107 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~ 107 (112)
||++||+.++||++..++++|++|.+.
T Consensus 666 hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 666 HFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 999999999999999999999999875
No 6
>KOG0740|consensus
Probab=99.44 E-value=5.2e-14 Score=112.37 Aligned_cols=76 Identities=25% Similarity=0.449 Sum_probs=62.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||..||++|+|.|+|.+...+.. . .+ .....|+|+..
T Consensus 352 Tegysgsdi~~l~kea~~~p~r~~~~~~~~---~-------------------------------~~--~~~~~r~i~~~ 395 (428)
T KOG0740|consen 352 TEGYSGSDITALCKEAAMGPLRELGGTTDL---E-------------------------------FI--DADKIRPITYP 395 (428)
T ss_pred hcCcccccHHHHHHHhhcCchhhcccchhh---h-------------------------------hc--chhccCCCCcc
Confidence 799999999999999999999997542100 0 01 11246899999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~g 112 (112)
||+.|++.++|+|++..+.+|.+|..+||..+
T Consensus 396 df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 396 DFKNAFKNIKPSVSLEGLEKYEKWDKEFGSSE 427 (428)
T ss_pred hHHHHHHhhccccCccccchhHHHhhhhcccc
Confidence 99999999999999999999999999999753
No 7
>KOG0733|consensus
Probab=99.35 E-value=2.5e-12 Score=106.43 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHHH
Q psy3809 2 YSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMHH 81 (112)
Q Consensus 2 eGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~D 81 (112)
+|||||||+.|||||++.+||+-+... . + +..++.-. .....+|+.|
T Consensus 715 ~gftGADLaaLvreAsi~AL~~~~~~~-----~--~-------------------------~~~~~~~~-~~~~~~t~~h 761 (802)
T KOG0733|consen 715 EGFTGADLAALVREASILALRESLFEI-----D--S-------------------------SEDDVTVR-SSTIIVTYKH 761 (802)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhhc-----c--c-------------------------cCccccee-eeeeeecHHH
Confidence 599999999999999999999965321 0 0 00011000 0134689999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 82 ILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 82 F~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
|++|+++++|||++.|-.+|+..++.+|
T Consensus 762 F~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 762 FEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999887
No 8
>KOG0737|consensus
Probab=99.34 E-value=2.2e-12 Score=101.22 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=63.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCC--CCCCCCCCcC
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVP--SDKLLEPPVS 78 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~--~~~~~~~~it 78 (112)
|+|||||||.+||+.|++.|+|+++... -... +.++...+....+ ......++++
T Consensus 292 t~GySGSDLkelC~~Aa~~~ire~~~~~-~~~~----------------------d~d~~~~d~~~~~~~~~~~~~r~l~ 348 (386)
T KOG0737|consen 292 TEGYSGSDLKELCRLAALRPIRELLVSE-TGLL----------------------DLDKAIADLKPTQAAASSCLLRPLE 348 (386)
T ss_pred cCCCcHHHHHHHHHHHhHhHHHHHHHhc-ccch----------------------hhhhhhhhccCCcccccccccCccc
Confidence 8999999999999999999999998764 1110 0000000111111 1124579999
Q ss_pred HHHHHHHHhhcCCCCCHH--HHHHHHHHHHHhcCCC
Q psy3809 79 MHHILKSLETSKPTVNDD--DMVKLRKFMEDFGQEG 112 (112)
Q Consensus 79 ~~DF~~AL~~~kpSvs~~--~l~~y~~w~~~fg~~g 112 (112)
++||..|+..|-+|++.+ .....+.|++.||.-|
T Consensus 349 ~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~ 384 (386)
T KOG0737|consen 349 QEDFPKAINRVSASVAMDATRMNALKQWNELYGEGG 384 (386)
T ss_pred HHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcccc
Confidence 999999999999997664 3778899999998643
No 9
>KOG0736|consensus
Probab=98.89 E-value=5.1e-09 Score=88.76 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHHH
Q psy3809 2 YSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMHH 81 (112)
Q Consensus 2 eGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~D 81 (112)
..|||||+..||.+|.|.+|+|.+....-.-+. ... . .-....|+|+|
T Consensus 877 ~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~-----------------~~e------------~---~~~~v~V~~eD 924 (953)
T KOG0736|consen 877 PNMTGADLYSLCSDAMLAAIKRTIHDIESGTIS-----------------EEE------------Q---ESSSVRVTMED 924 (953)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc-----------------ccc------------c---CCceEEEEHHH
Confidence 479999999999999999999976542110000 000 0 01234699999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 82 ILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 82 F~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
|.+|+++..||||.++|.+|+.-+.+|-
T Consensus 925 flks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 925 FLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999984
No 10
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.3e-09 Score=86.67 Aligned_cols=50 Identities=32% Similarity=0.587 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||..+|++|+|.++++.. ...||++
T Consensus 443 t~~~sgadi~~i~~ea~~~~~~~~~------------------------------------------------~~~~~~~ 474 (494)
T COG0464 443 TEGYSGADIAALVREAALEALREAR------------------------------------------------RREVTLD 474 (494)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhc------------------------------------------------cCCccHH
Confidence 7899999999999999999999842 2469999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHH
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKF 104 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w 104 (112)
||..|+++++||++ |++|
T Consensus 475 ~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 475 DFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHHHHHHhcCCCCC------hhhc
Confidence 99999999999998 9888
No 11
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.87 E-value=7.3e-09 Score=84.48 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=49.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.++|++|+..++.+ .++|+.+
T Consensus 425 T~GfSGAdI~~lv~eA~~~A~~~--------------------------------------------------~~~lt~~ 454 (489)
T CHL00195 425 SNKFSGAEIEQSIIEAMYIAFYE--------------------------------------------------KREFTTD 454 (489)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHc--------------------------------------------------CCCcCHH
Confidence 79999999999999999877543 1358999
Q ss_pred HHHHHHhhcCCC--CCHHHHHHHHHHHHH
Q psy3809 81 HILKSLETSKPT--VNDDDMVKLRKFMED 107 (112)
Q Consensus 81 DF~~AL~~~kpS--vs~~~l~~y~~w~~~ 107 (112)
||..|++++.|+ +..++++.+++|...
T Consensus 455 dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 455 DILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 999999999998 466789999999874
No 12
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.6e-08 Score=78.55 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+|||||||+++|.||.|.+||+
T Consensus 353 ~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 353 TEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred cCCCchHHHHHHHHHHhHHHHHh
Confidence 79999999999999999999998
No 13
>KOG0733|consensus
Probab=98.60 E-value=9.9e-08 Score=79.62 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=25.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhh
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSA 27 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~ 27 (112)
|-||.||||.+||++|++.+|+++++.
T Consensus 392 TPGfVGADL~AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 392 TPGFVGADLMALCREAAFVAIKRILDQ 418 (802)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 789999999999999999999997763
No 14
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.48 E-value=2.1e-07 Score=73.75 Aligned_cols=47 Identities=28% Similarity=0.324 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|+|.++|+- ...|+++
T Consensus 333 t~g~sgadl~~l~~eA~~~a~~~~-------------------------------------------------~~~i~~~ 363 (389)
T PRK03992 333 TEGASGADLKAICTEAGMFAIRDD-------------------------------------------------RTEVTME 363 (389)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcC-------------------------------------------------CCCcCHH
Confidence 789999999999999999999871 1248999
Q ss_pred HHHHHHhhcCCCCCHH
Q psy3809 81 HILKSLETSKPTVNDD 96 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~ 96 (112)
||.+|+.+++++-..+
T Consensus 364 d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 364 DFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHhcccccc
Confidence 9999999999886543
No 15
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.43 E-value=2.8e-07 Score=73.56 Aligned_cols=23 Identities=39% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+|||||||.+||++|+|.++|+
T Consensus 347 t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 347 PEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHc
Confidence 78999999999999999999987
No 16
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.18 E-value=2.8e-06 Score=68.68 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+|||||||.++|++|+|.++|+
T Consensus 385 t~g~sgAdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 385 KDELSGADIKAICTEAGLLALRE 407 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999997
No 17
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.17 E-value=3.4e-06 Score=66.04 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+||||+||.+||++|+|.++|+
T Consensus 324 t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 324 TEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999987
No 18
>KOG0741|consensus
Probab=98.11 E-value=6.9e-06 Score=68.07 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=53.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|.+||||+|..|||.|.--++-+.+.+.- + .. +.+..+....|++.
T Consensus 436 TKNfSGAEleglVksA~S~A~nR~vk~~~-~----------------------------~~-----~~~~~~e~lkV~r~ 481 (744)
T KOG0741|consen 436 TKNFSGAELEGLVKSAQSFAMNRHVKAGG-K----------------------------VE-----VDPVAIENLKVTRG 481 (744)
T ss_pred hcCCchhHHHHHHHHHHHHHHHhhhccCc-c----------------------------ee-----cCchhhhheeecHH
Confidence 67999999999999999999999765420 0 00 11223345689999
Q ss_pred HHHHHHhhcCCCC--CHHHHHHHHH
Q psy3809 81 HILKSLETSKPTV--NDDDMVKLRK 103 (112)
Q Consensus 81 DF~~AL~~~kpSv--s~~~l~~y~~ 103 (112)
||..||..+||.. ++++|++|..
T Consensus 482 DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 482 DFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHhcCcccCCCHHHHHHHHh
Confidence 9999999999986 6678888864
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.96 E-value=1.7e-05 Score=67.37 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=45.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||+|+||..||++|+|.++++++...... .. ...++...+....|+++
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r~~~~~~~~-------------------------~~-----~~~i~~~~~~~~~v~~~ 426 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRRFIREGKIN-------------------------FE-----AEEIPAEVLKELKVTMK 426 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccccc-------------------------cc-----cccccchhcccccccHH
Confidence 6899999999999999999999976421100 00 01122233345679999
Q ss_pred HHHHHHhhcCCCC
Q psy3809 81 HILKSLETSKPTV 93 (112)
Q Consensus 81 DF~~AL~~~kpSv 93 (112)
||..|++.++||.
T Consensus 427 df~~Al~~v~ps~ 439 (733)
T TIGR01243 427 DFMEALKMVEPSA 439 (733)
T ss_pred HHHHHHhhccccc
Confidence 9999999999985
No 20
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.92 E-value=1.8e-05 Score=66.58 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.|||||||.+||++|+..++|+
T Consensus 353 t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 353 TPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 78999999999999999999875
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.90 E-value=2.5e-05 Score=63.56 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+||||+||.+||++|++.++|+
T Consensus 256 t~G~sgadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 256 TPGFSGADLANLLNEAALLAARK 278 (495)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 78999999999999999988765
No 22
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.90 E-value=1.6e-05 Score=73.31 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.|||||||++||+||++.++|+
T Consensus 1838 T~GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1838 TMGSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 78999999999999999999997
No 23
>CHL00176 ftsH cell division protein; Validated
Probab=97.73 E-value=0.00011 Score=61.94 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.||||+||.+||++|++.+.|+
T Consensus 384 t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 384 TPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999988765
No 24
>KOG0731|consensus
Probab=97.67 E-value=7.3e-05 Score=63.96 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=22.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.|||||||.+||.||+..+.|+
T Consensus 514 t~gf~gadl~n~~neaa~~a~r~ 536 (774)
T KOG0731|consen 514 TPGFSGADLANLCNEAALLAARK 536 (774)
T ss_pred CCCCcHHHHHhhhhHHHHHHHHh
Confidence 78999999999999999999998
No 25
>KOG0726|consensus
Probab=97.62 E-value=4.6e-05 Score=59.62 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHH
Q psy3809 2 YSYSGADISIVVRDALMQPVRLV 24 (112)
Q Consensus 2 eGySGaDI~~lcreA~m~plr~~ 24 (112)
+-+|||||+++|-||.|.++|+.
T Consensus 388 ddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 388 DDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cccccccHHHHHHHHhHHHHHHH
Confidence 46899999999999999999983
No 26
>KOG0730|consensus
Probab=97.34 E-value=0.00022 Score=60.13 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.||.||||..||++|++..+|+
T Consensus 382 thGyvGaDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 382 THGYVGADLAALCREASLQATRR 404 (693)
T ss_pred ccchhHHHHHHHHHHHHHHHhhh
Confidence 67999999999999999999999
No 27
>KOG0735|consensus
Probab=97.02 E-value=0.0018 Score=55.66 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhh
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSA 27 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~ 27 (112)
|+|||||||..||-.|-|.+++++...
T Consensus 866 T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 866 TDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998754
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00059 Score=57.19 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|-|||||||.+||.||+..+.|+
T Consensus 351 tpGfsGAdL~nl~NEAal~aar~ 373 (596)
T COG0465 351 TPGFSGADLANLLNEAALLAARR 373 (596)
T ss_pred CCCcccchHhhhHHHHHHHHHHh
Confidence 67999999999999999999987
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.95 E-value=0.0041 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHh
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~ 25 (112)
+++||||+|+++|.+|...+|++.+
T Consensus 435 ~d~~sGa~i~~iv~~a~~~ai~~~~ 459 (512)
T TIGR03689 435 KDFVSGAMIANIVDRAKKRAIKDHI 459 (512)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999865
No 30
>KOG0734|consensus
Probab=96.81 E-value=0.0017 Score=54.40 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVR 22 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr 22 (112)
|-|||||||+|||..||..+-.
T Consensus 502 T~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 502 TPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred CCCCchHHHHHHHHHHHHHHHh
Confidence 6799999999999999987643
No 31
>KOG0727|consensus
Probab=96.71 E-value=0.0022 Score=49.60 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q psy3809 2 YSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 2 eGySGaDI~~lcreA~m~plr~ 23 (112)
+--|||||..+|+||.|.++|+
T Consensus 358 dkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 358 DKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred cccchhhHHHHHHHHhHHHHHh
Confidence 3569999999999999999998
No 32
>KOG0728|consensus
Probab=96.71 E-value=0.0014 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q psy3809 2 YSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 2 eGySGaDI~~lcreA~m~plr~ 23 (112)
.|-|||+++.+|-||.|-+||+
T Consensus 350 ~gasgaevk~vcteagm~alre 371 (404)
T KOG0728|consen 350 PGASGAEVKGVCTEAGMYALRE 371 (404)
T ss_pred CCCccchhhhhhhhhhHHHHHH
Confidence 5899999999999999999998
No 33
>KOG0732|consensus
Probab=96.32 E-value=0.0034 Score=55.64 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=42.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|-||=||||+.||-+|++.++|+-....++.. +++ . ..+....|...
T Consensus 470 t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~--------------~kl-----------~--------~d~~~ikV~~~ 516 (1080)
T KOG0732|consen 470 TSGYGGADLKALCTEAALIALRRSFPQIYSSS--------------DKL-----------L--------IDVALIKVEVR 516 (1080)
T ss_pred ccccchHHHHHHHHHHhhhhhccccCeeeccc--------------ccc-----------c--------ccchhhhhhhH
Confidence 56999999999999999999998543322110 000 0 01123448888
Q ss_pred HHHHHHhhcCCCCCH
Q psy3809 81 HILKSLETSKPTVND 95 (112)
Q Consensus 81 DF~~AL~~~kpSvs~ 95 (112)
||..|+.++.||...
T Consensus 517 ~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 517 DFVEAMSRITPSSRR 531 (1080)
T ss_pred hhhhhhhccCCCCCc
Confidence 888888888887655
No 34
>KOG0652|consensus
Probab=95.89 E-value=0.0049 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|++|.||.++++|-||.|.+||+
T Consensus 373 TddFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 373 TDDFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred ccccCchhheeeehhhhHHHHhc
Confidence 79999999999999999999998
No 35
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.04 Score=44.74 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHh
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~ 25 (112)
|.||+|+|+..||++|.+.++++.+
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~r~~ 205 (494)
T COG0464 181 TVGKSGADLGALAKEAALRELRRAI 205 (494)
T ss_pred cCCccHHHHHHHHHHHHHHHHHhhh
Confidence 6799999999999999999999953
No 36
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.24 E-value=0.07 Score=41.54 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=18.1
Q ss_pred CCCCcHHHHHH-HHHHHHHHHHHH
Q psy3809 1 MYSYSGADISI-VVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~-lcreA~m~plr~ 23 (112)
|.||||-||+. +.+.|+.++|++
T Consensus 315 t~g~SgRdikekvlK~aLh~Ai~e 338 (368)
T COG1223 315 TKGMSGRDIKEKVLKTALHRAIAE 338 (368)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHh
Confidence 78999999985 566777777766
No 37
>KOG0729|consensus
Probab=94.23 E-value=0.05 Score=42.56 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q psy3809 3 SYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 3 GySGaDI~~lcreA~m~plr~ 23 (112)
+-+||||..+|-||.|-+||.
T Consensus 381 nstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 381 NSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred CCcchHHHHHHHHhhHHHHHH
Confidence 458999999999999999997
No 38
>KOG0735|consensus
Probab=91.93 E-value=0.27 Score=42.76 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLV 24 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~ 24 (112)
||||+.-||..++..|...++++.
T Consensus 605 TEGy~~~DL~ifVeRai~~a~ler 628 (952)
T KOG0735|consen 605 TEGYLATDLVIFVERAIHEAFLER 628 (952)
T ss_pred cCCccchhHHHHHHHHHHHHHHHH
Confidence 899999999999999999999663
No 39
>KOG0651|consensus
Probab=90.30 E-value=0.082 Score=41.86 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
++||.|+|+.+.|+||-|-++|+
T Consensus 334 ~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 334 VDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred HhccChHHHhhhcccccccccch
Confidence 47999999999999999999887
No 40
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=59.27 E-value=14 Score=25.48 Aligned_cols=32 Identities=6% Similarity=0.296 Sum_probs=26.6
Q ss_pred CCCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy3809 74 EPPVSMHHILKSLETSKPTVNDDDMVKLRKFMED 107 (112)
Q Consensus 74 ~~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~ 107 (112)
-+|-|..||..++.. ..+.|+-|.+|++|..+
T Consensus 81 S~pGTLN~fL~~~~e--~dl~Pevlk~fe~m~~~ 112 (134)
T PF08400_consen 81 SKPGTLNDFLTAPDE--DDLRPEVLKRFEEMVAQ 112 (134)
T ss_pred CCCCcHHHHhhcccc--ccCCHHHHHHHHHHHHH
Confidence 468999999976655 78889999999999865
No 41
>KOG0736|consensus
Probab=54.89 E-value=15 Score=32.68 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=21.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhh
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSA 27 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~ 27 (112)
|.|||=+||..|+..+......++..+
T Consensus 594 t~gfs~~~L~~l~~~~s~~~~~~i~~~ 620 (953)
T KOG0736|consen 594 TSGFSFGDLEALVAHSSLAAKTRIKNK 620 (953)
T ss_pred cCCCCHHHHHHHhcCchHHHHHHHHhh
Confidence 689999999999999977766665443
No 42
>KOG0742|consensus
Probab=51.24 E-value=9.8 Score=31.72 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVR 14 (112)
Q Consensus 1 TeGySGaDI~~lcr 14 (112)
|+||||-+|+-|+-
T Consensus 573 TeGfSGREiakLva 586 (630)
T KOG0742|consen 573 TEGFSGREIAKLVA 586 (630)
T ss_pred ccCCcHHHHHHHHH
Confidence 89999999998863
No 43
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=49.63 E-value=23 Score=19.41 Aligned_cols=25 Identities=4% Similarity=0.222 Sum_probs=19.6
Q ss_pred CcCHHHHHHHHhhcCCC-CCHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPT-VNDDDMVK 100 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpS-vs~~~l~~ 100 (112)
.|+.++|..+|....-. ++++++..
T Consensus 4 ~i~~~~~~~~l~~~g~~~~s~~e~~~ 29 (54)
T PF13833_consen 4 KITREEFRRALSKLGIKDLSEEEVDR 29 (54)
T ss_dssp EEEHHHHHHHHHHTTSSSSCHHHHHH
T ss_pred EECHHHHHHHHHHhCCCCCCHHHHHH
Confidence 48899999999877655 78877554
No 44
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.11 E-value=47 Score=28.69 Aligned_cols=20 Identities=5% Similarity=0.122 Sum_probs=16.1
Q ss_pred CCcCHHHHHHHHhhcCCCCC
Q psy3809 75 PPVSMHHILKSLETSKPTVN 94 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs 94 (112)
..||.+|+++|+++.++...
T Consensus 385 ~~I~ae~Ve~a~~~~~~~e~ 404 (647)
T COG1067 385 KLITAEDVEEALQKRELREG 404 (647)
T ss_pred ccCcHHHHHHHHHhhhhHHH
Confidence 45999999999999666543
No 45
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=45.02 E-value=11 Score=20.00 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=7.3
Q ss_pred CCccccCCC
Q psy3809 46 DDLLTPCSP 54 (112)
Q Consensus 46 ~~~~~pc~~ 54 (112)
+++|+||+.
T Consensus 23 g~~WMPC~~ 31 (34)
T PF12518_consen 23 GDKWMPCSN 31 (34)
T ss_pred cCccccCcc
Confidence 368999986
No 46
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=44.13 E-value=48 Score=17.29 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=20.8
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
..|+.++|..+++...++.+.+.+..
T Consensus 15 g~l~~~e~~~~l~~~~~~~~~~~~~~ 40 (63)
T cd00051 15 GTISADELKAALKSLGEGLSEEEIDE 40 (63)
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 35889999999999988888766554
No 47
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=41.97 E-value=36 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=26.5
Q ss_pred cCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 77 VSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 77 it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
|+ .+|..+|+.+.+..+......|.++-+.||.
T Consensus 45 L~-~~F~~~l~~L~~~~~~~~~~~y~~f~~~yGT 77 (212)
T PF01823_consen 45 LT-PEFLSDLNALPAEYNSDNTDEYYRFFDKYGT 77 (212)
T ss_dssp BG-HHHHHHHHTSHSS--HHHHHHHHHHHHHH-S
T ss_pred cC-HHHHHHHHhhCcccCccchHHHHHHHHHhCc
Confidence 55 8999999999999888887779999999994
No 48
>PF12703 plasmid_Toxin: Toxin of toxin-antitoxin type 1 system; InterPro: IPR024640 This family is the toxin of a type 1 toxin-antitoxin system which is found in a relatively widespread range of bacterial species. The species distribution suggests frequent horizontal gene transfer. In a type 1 system, as characterised for the plasmid-encoded E coli hok/sok system, the toxin-encoding stable mRNA encodes a protein which rapidly leads to cell death unless the translation is suppressed by a short-lived small RNA. The plasmid-encoded module prevents the growth of plasmid-free offspring, thus ensuring the persistence of the plasmid in the population. Plasmid-free cells arising after cell-division will be killed because the stable mRNA toxin is present while the comparably unstable anti-toxin is rapidly degraded. Where the system is transcribed chromosomally, the mechanism is poorly understood [].
Probab=41.77 E-value=16 Score=22.52 Aligned_cols=17 Identities=0% Similarity=0.130 Sum_probs=14.0
Q ss_pred CcCHHHHHHHHhhcCCC
Q psy3809 76 PVSMHHILKSLETSKPT 92 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpS 92 (112)
..|.+||.+||..++-+
T Consensus 56 rAT~~DF~eAm~~Irq~ 72 (74)
T PF12703_consen 56 RATQEDFREAMSAIRQA 72 (74)
T ss_pred cCcHHHHHHHHHHHHHh
Confidence 47899999999988643
No 49
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=41.02 E-value=22 Score=29.77 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQP 20 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~p 20 (112)
+.||+|+|+..+|++|.-..
T Consensus 391 ~~g~~~a~~~al~~~av~~~ 410 (512)
T TIGR03689 391 FDGDREATAAALIQRAVDHL 410 (512)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 46999999999999985443
No 50
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=40.25 E-value=25 Score=20.49 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.0
Q ss_pred CCCCCcCHHHHHHHHhhcCCCC
Q psy3809 72 LLEPPVSMHHILKSLETSKPTV 93 (112)
Q Consensus 72 ~~~~~it~~DF~~AL~~~kpSv 93 (112)
+...+.|.+||++||....++.
T Consensus 21 L~L~~ftlddf~~AL~~~~~~~ 42 (61)
T PF02791_consen 21 LGLSPFTLDDFEQALLCNDPSG 42 (61)
T ss_pred HcCCcCCHHHHHHHHcCCCcch
Confidence 4556779999999999988764
No 51
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=34.51 E-value=1.1e+02 Score=22.28 Aligned_cols=16 Identities=0% Similarity=0.042 Sum_probs=12.2
Q ss_pred CCcCHHHHHHHHhhcC
Q psy3809 75 PPVSMHHILKSLETSK 90 (112)
Q Consensus 75 ~~it~~DF~~AL~~~k 90 (112)
..|+.+++..++..+.
T Consensus 252 ~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 REIGGEEVREVIAEID 267 (269)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 4688888888887654
No 52
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=33.72 E-value=81 Score=20.15 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=22.6
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVKLRKFMEDF 108 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~f 108 (112)
.|+.+||.-+|++=+.-+ .=+..|-.|++..
T Consensus 54 k~~~eD~~FliR~D~~Kl--~Rl~~lL~~k~~~ 84 (92)
T cd07978 54 KVKVEDLIFLLRKDPKKL--ARLRELLSMKDEL 84 (92)
T ss_pred CCCHHHHHHHHhcCHHHH--HHHHHHHHHHHHH
Confidence 358999999998855443 3477788887754
No 53
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=32.71 E-value=40 Score=24.39 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=25.6
Q ss_pred CCCcCHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy3809 74 EPPVSMHHILKSLETSKPTVNDDDMVKLRKFM 105 (112)
Q Consensus 74 ~~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~ 105 (112)
..|+|..++.+|+.-.||+||. -+.+.+.|+
T Consensus 39 ~~Pmtl~Ei~E~lg~Sks~vS~-~lkkL~~~~ 69 (177)
T COG1510 39 RKPLTLDEIAEALGMSKSNVSM-GLKKLQDWN 69 (177)
T ss_pred CCCccHHHHHHHHCCCcchHHH-HHHHHHhcc
Confidence 5689999999999999999995 456666653
No 54
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.05 E-value=1.3e+02 Score=18.68 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=14.2
Q ss_pred CCcHHHHHHHH------HHHHHHHHHH
Q psy3809 3 SYSGADISIVV------RDALMQPVRL 23 (112)
Q Consensus 3 GySGaDI~~lc------reA~m~plr~ 23 (112)
|||-+||..+- ++.++..|+.
T Consensus 29 Gls~~dI~~i~~~~~~~~eq~~~mL~~ 55 (86)
T cd08318 29 EMKDKEIRAIESDSEDIKMQAKQLLVA 55 (86)
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 78888888876 3455555554
No 55
>cd07358 harmonin_N_like_1 Domains similar to the N-terminal protein-binding module of harmonin. This domain is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. Harmonin (not belonging to this group) is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. This domain is also related to domains found in several other PDZ domain-containing scaffold proteins which organize supramolecular complexes. This subgroup is comprised of uncharacterized PDZ-containing proteins including a protein designated Bos taurus PDZ containing 7 which has an N-terminal PDZ domain and a C-terminal harmonin_N_like domain; however the characterized human PDZ containing 7 containing two PDZ domains does not appear to contain a harmonin_N_like domain.
Probab=31.29 E-value=35 Score=21.44 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=17.0
Q ss_pred HHhhcCCCCCHHHHHHHHH
Q psy3809 85 SLETSKPTVNDDDMVKLRK 103 (112)
Q Consensus 85 AL~~~kpSvs~~~l~~y~~ 103 (112)
-|+.+|.-|++.||.+|..
T Consensus 56 LL~eIR~~v~p~DL~rFDs 74 (78)
T cd07358 56 LLRDIRSVVTPTDLGRFDS 74 (78)
T ss_pred HHHHHHhcCCHHHHHHHHh
Confidence 5788999999999999975
No 56
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=30.94 E-value=30 Score=22.08 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDF 108 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~f 108 (112)
..|+.+||.-+|++=+.-+. =+..|-.|.+..
T Consensus 53 ~~i~~eDl~F~lR~D~~Kl~--Rl~~~L~~k~~~ 84 (93)
T PF02269_consen 53 KKIKVEDLLFLLRKDPKKLA--RLRELLSMKDEI 84 (93)
T ss_dssp ----------------------------------
T ss_pred CcCcHHHHHHHHhcCHHHHH--HHHHHHHHHHHH
Confidence 36888999999998666554 477777777653
No 57
>PF08831 MHCassoc_trimer: Class II MHC-associated invariant chain trimerisation domain; InterPro: IPR011988 This entry represents the trimerisation domain of the MHC class II-associated invariant chain (Ii). Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several molecules then act upon MHC II molecules in endosomes to facilitate peptide loading: Ii-degrading proteases, the peptide exchange factor, human leukocyte antigen-DM (HLA-DM), and its modulator, HLA-DO (DO). The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1IIE_C.
Probab=30.78 E-value=27 Score=21.67 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy3809 79 MHHILKSLETSKPTVNDDDMVKLRKFMED 107 (112)
Q Consensus 79 ~~DF~~AL~~~kpSvs~~~l~~y~~w~~~ 107 (112)
.+.|.+-|+..|.+++..+-+.|+.|...
T Consensus 24 n~tf~~NL~~LK~~M~~~~Wk~FEsWM~~ 52 (72)
T PF08831_consen 24 NGTFLENLKHLKNQMNESDWKSFESWMHQ 52 (72)
T ss_dssp -S-HHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 48899999999999999999999999875
No 58
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=28.91 E-value=1.6e+02 Score=22.37 Aligned_cols=23 Identities=13% Similarity=0.530 Sum_probs=14.0
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHH
Q psy3809 82 ILKSLETSKPTVNDDDMVKLRKFM 105 (112)
Q Consensus 82 F~~AL~~~kpSvs~~~l~~y~~w~ 105 (112)
+++.|+. .|++++++..+|..|-
T Consensus 68 L~~~l~~-~~~i~~e~~~~y~~~l 90 (254)
T PF06798_consen 68 LEEGLKD-HPSISEEERERYLEFL 90 (254)
T ss_pred HHHHhhc-ccccCHHHHHHHHHHH
Confidence 3334443 5677877777776653
No 59
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=28.44 E-value=65 Score=18.38 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=15.4
Q ss_pred CHHHHHHHHhhcCCCCCHHH---HHHHHHHHH
Q psy3809 78 SMHHILKSLETSKPTVNDDD---MVKLRKFME 106 (112)
Q Consensus 78 t~~DF~~AL~~~kpSvs~~~---l~~y~~w~~ 106 (112)
|.+|+ ++.+.+++..+ |+.|++|++
T Consensus 25 tl~Dl----~~~~~~Lt~~Q~iGl~yyeD~~q 52 (52)
T PF10391_consen 25 TLEDL----RKSKSKLTWQQQIGLKYYEDFQQ 52 (52)
T ss_dssp SHHHH----HHGGCGS-HHHHHHHHTHHHHH-
T ss_pred CHHHH----hhhhccCCHHHHHHHHHHHHhcC
Confidence 45666 44455777765 888998874
No 60
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=28.13 E-value=1.3e+02 Score=19.41 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=26.6
Q ss_pred cCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC
Q psy3809 77 VSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 77 it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~g 112 (112)
+|-.+++.+-..-+......-.+-...|.+++|..|
T Consensus 32 lse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~G~~a 67 (97)
T cd08316 32 LSEPKIDEIKLDNPQDTAEQKVQLLRAWYQSHGKTG 67 (97)
T ss_pred CCHHHHHHHHHcCCCChHHHHHHHHHHHHHHhCCCc
Confidence 566666666666666666667888899999999765
No 61
>smart00457 MACPF membrane-attack complex / perforin.
Probab=27.29 E-value=94 Score=21.98 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=26.3
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
.+++ .+|..+|+.+....+.. .|..+-+.||.
T Consensus 20 ~~l~-~~f~~~l~~Lp~~~~~~---~~~~fi~~yGT 51 (194)
T smart00457 20 IPLA-LEFLKALRDLPDQYNRG---AYARFIDKYGT 51 (194)
T ss_pred CCcC-HHHHHHHHhCccccCHH---HHHHHHHHhCC
Confidence 4454 78999999999888765 88999999983
No 62
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=26.59 E-value=42 Score=21.33 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=12.0
Q ss_pred CcCHHHHHHHHhhc
Q psy3809 76 PVSMHHILKSLETS 89 (112)
Q Consensus 76 ~it~~DF~~AL~~~ 89 (112)
.||..||..+|.+-
T Consensus 27 ~iTLgdFK~~l~k~ 40 (83)
T smart00021 27 RVTLGDFKEVLTKK 40 (83)
T ss_pred ceEHHHHHHhhccC
Confidence 39999999999773
No 63
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=26.44 E-value=1.8e+02 Score=19.18 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=27.0
Q ss_pred cCHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHhcC
Q psy3809 77 VSMHHILKSLETS-KPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 77 it~~DF~~AL~~~-kpSvs~~~l~~y~~w~~~fg~ 110 (112)
++.+++.+.|++. +..+.+.-....++|.+.||.
T Consensus 55 ~~~e~i~~~L~~~S~~~lP~~v~~~i~~w~~~~g~ 89 (129)
T PF13625_consen 55 LTAEEIIEFLERYSKNPLPQNVEQSIEDWARRYGR 89 (129)
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Confidence 6677777777775 556787888889999999995
No 64
>PHA01817 hypothetical protein
Probab=23.81 E-value=1.1e+02 Score=24.40 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy3809 2 YSYSGADISIVVRDALMQPVRLVQSATHFV 31 (112)
Q Consensus 2 eGySGaDI~~lcreA~m~plr~~~~~~~~~ 31 (112)
.|=||+-|-.|.+.|..+-|++++.+..+.
T Consensus 208 sgdsgssllalakqamqellkkvqdalqwd 237 (479)
T PHA01817 208 SGDSGSSLLALAKQAMQELLKKVQDALQWD 237 (479)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 477999999999999999999999887664
No 65
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=23.53 E-value=87 Score=21.54 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcCCC--CCHHHHHHHHHHHHHhcCCC
Q psy3809 79 MHHILKSLETSKPT--VNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 79 ~~DF~~AL~~~kpS--vs~~~l~~y~~w~~~fg~~g 112 (112)
.+.-++.|.+-.-- +|+++|.+|.+=++..|+.|
T Consensus 64 ~en~~ei~ekygd~lFLT~eElkkY~ks~~rWg~r~ 99 (145)
T COG2028 64 FENPMEIIEKYGDRLFLTPEELKKYMKSRKRWGSRG 99 (145)
T ss_pred ecCHHHHHHHhCCeeecCHHHHHHHHHHHHHhcccc
Confidence 34445666665444 48999999999888888754
No 66
>CHL00132 psaF photosystem I subunit III; Validated
Probab=23.35 E-value=34 Score=24.92 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=18.5
Q ss_pred HHHHHhhcCCCCCH---------HHHHHHHHHHH---HhcCCC
Q psy3809 82 ILKSLETSKPTVND---------DDMVKLRKFME---DFGQEG 112 (112)
Q Consensus 82 F~~AL~~~kpSvs~---------~~l~~y~~w~~---~fg~~g 112 (112)
++.-|++-.+...+ ....||+++.+ ..|.+|
T Consensus 49 Le~rlk~Y~~~s~p~lal~~qi~~tk~RFe~Y~~~~lLCG~DG 91 (185)
T CHL00132 49 LENRLAKYEANSPPALALQQQIDKTKARFDKYGRSGLLCGTDG 91 (185)
T ss_pred HHhhhhccCCCCChHHHHHHHHHHHHHHHHHhcccccccCCCC
Confidence 44455555555444 45677887777 466655
No 67
>PHA02754 hypothetical protein; Provisional
Probab=22.91 E-value=23 Score=21.18 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=16.6
Q ss_pred CCcCHHHHHHHHhhcCCCCCH
Q psy3809 75 PPVSMHHILKSLETSKPTVND 95 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~ 95 (112)
..|+.+||.+|++.+|--+|.
T Consensus 9 k~i~eK~Fke~MRelkD~LSe 29 (67)
T PHA02754 9 KAIMEKDFKEAMRELKDILSE 29 (67)
T ss_pred HHHHHhHHHHHHHHHHHHHhh
Confidence 358889999999998865553
No 68
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=22.81 E-value=1.1e+02 Score=25.83 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=26.1
Q ss_pred CCCCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 73 LEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 73 ~~~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
.+|++. +=+..=|+.++|-++++++++..+..++|..
T Consensus 6 PvP~L~-~Tl~~yL~s~~pl~~~ee~~~t~~~v~~F~~ 42 (591)
T PF00755_consen 6 PVPSLE-DTLDRYLESVKPLLSDEEYEETKEAVEEFLK 42 (591)
T ss_dssp ----HH-HHHHHHHHHHTTTS-HHHHHHHHHHHHHHHS
T ss_pred CCCCHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 344442 3345667789999999999999999999987
No 69
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=22.18 E-value=28 Score=20.32 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=20.7
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLR 102 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~ 102 (112)
.+|+..|+-+.|.-.+|||+ +.+.+..
T Consensus 21 ~~v~~~~iA~~L~vs~~tvt-~ml~~L~ 47 (60)
T PF01325_consen 21 GPVRTKDIAERLGVSPPTVT-EMLKRLA 47 (60)
T ss_dssp SSBBHHHHHHHHTS-HHHHH-HHHHHHH
T ss_pred CCccHHHHHHHHCCChHHHH-HHHHHHH
Confidence 46889999999999999988 4666544
No 70
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=21.96 E-value=1e+02 Score=23.57 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhc
Q psy3809 96 DDMVKLRKFMEDFG 109 (112)
Q Consensus 96 ~~l~~y~~w~~~fg 109 (112)
+-+++|..+.+.+|
T Consensus 312 ~~~~~y~~~~~~~~ 325 (365)
T TIGR02928 312 EVYEVYKEVCEDIG 325 (365)
T ss_pred HHHHHHHHHHHhcC
Confidence 34556777766665
No 71
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=21.82 E-value=2.8e+02 Score=20.82 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=9.5
Q ss_pred HhhcCCCCCHHHHHHHHH
Q psy3809 86 LETSKPTVNDDDMVKLRK 103 (112)
Q Consensus 86 L~~~kpSvs~~~l~~y~~ 103 (112)
|..-+.+++.+++.||++
T Consensus 156 L~~n~~~l~~ed~~rY~~ 173 (248)
T PF04614_consen 156 LEENKSKLSAEDYERYEK 173 (248)
T ss_dssp HHHHCCCS-HHHHHHHHH
T ss_pred HHhCcCcCCHHHHHHHHH
Confidence 444455666666666654
No 72
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=21.44 E-value=1.7e+02 Score=20.18 Aligned_cols=32 Identities=13% Similarity=0.506 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHhcC
Q psy3809 79 MHHILKSLETSKPT-----VNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 79 ~~DF~~AL~~~kpS-----vs~~~l~~y~~w~~~fg~ 110 (112)
...|.+=|++.+|. .+..++-+|..|..+||.
T Consensus 27 wntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~Gk 63 (132)
T PF04852_consen 27 WNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGK 63 (132)
T ss_pred HHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCC
Confidence 45566777777777 777899999999999994
No 73
>PTZ00184 calmodulin; Provisional
Probab=20.97 E-value=1.4e+02 Score=19.15 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=21.8
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+++.+.+.++.+++...
T Consensus 99 g~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
T PTZ00184 99 GFISAAELRHVMTNLGEKLTDEEVDEM 125 (149)
T ss_pred CeEeHHHHHHHHHHHCCCCCHHHHHHH
Confidence 568999999999998888887766543
No 74
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=20.91 E-value=17 Score=14.95 Aligned_cols=7 Identities=14% Similarity=0.572 Sum_probs=4.9
Q ss_pred CCCcHHH
Q psy3809 2 YSYSGAD 8 (112)
Q Consensus 2 eGySGaD 8 (112)
.||+|.+
T Consensus 6 ~G~~G~~ 12 (13)
T PF12661_consen 6 PGWTGPN 12 (13)
T ss_dssp TTEETTT
T ss_pred CCCcCCC
Confidence 5888853
No 75
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=20.82 E-value=1.1e+02 Score=24.02 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=18.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+|..| +|..|+..||..+|+.
T Consensus 251 s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 251 SEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred cCCchH-HHHHHHHHHHHHHHhc
Confidence 567776 6899999999999986
No 76
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.56 E-value=1.1e+02 Score=18.53 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHHHHHHH
Q psy3809 2 YSYSGADISIVVRDALMQ 19 (112)
Q Consensus 2 eGySGaDI~~lcreA~m~ 19 (112)
+|||++||-.=..+..+.
T Consensus 33 ~G~s~~~Il~~l~~~l~~ 50 (89)
T PF08542_consen 33 EGYSASDILKQLHEVLVE 50 (89)
T ss_dssp TT--HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 599999988777766665
No 77
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=20.42 E-value=91 Score=21.92 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHhcC
Q psy3809 94 NDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 94 s~~~l~~y~~w~~~fg~ 110 (112)
+++++.+|.+|......
T Consensus 21 sp~~l~~Y~~~~~~ik~ 37 (158)
T PF12239_consen 21 SPSDLRRYLAWKAKIKQ 37 (158)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 56799999999987543
No 78
>PHA00455 hypothetical protein
Probab=20.36 E-value=44 Score=21.21 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=17.4
Q ss_pred CcCHHHHHHHHhhcCCCCC
Q psy3809 76 PVSMHHILKSLETSKPTVN 94 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs 94 (112)
.||...|++|.++.+|+|.
T Consensus 47 lITrG~~~~A~~k~rp~vp 65 (85)
T PHA00455 47 LITRGKFEKATQKSRPFVP 65 (85)
T ss_pred EEecchHHHhhccCCCceE
Confidence 4899999999999999985
No 79
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=20.20 E-value=1.5e+02 Score=24.75 Aligned_cols=14 Identities=14% Similarity=0.008 Sum_probs=10.9
Q ss_pred CcCHHHHHHHHhhc
Q psy3809 76 PVSMHHILKSLETS 89 (112)
Q Consensus 76 ~it~~DF~~AL~~~ 89 (112)
.|+.+|++.++...
T Consensus 319 ~It~~dI~~vl~~~ 332 (531)
T TIGR02902 319 RILAEDIEWVAENG 332 (531)
T ss_pred EEcHHHHHHHhCCc
Confidence 58888888888753
Done!