Query psy3809
Match_columns 112
No_of_seqs 152 out of 1042
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:59:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zan_A Vacuolar protein sortin 99.9 3E-25 1E-29 175.5 8.9 112 1-112 333-444 (444)
2 1xwi_A SKD1 protein; VPS4B, AA 99.9 3E-25 1E-29 169.0 8.4 112 1-112 211-322 (322)
3 3eie_A Vacuolar protein sortin 99.9 8.6E-23 3E-27 154.7 9.5 106 1-112 216-321 (322)
4 2qp9_X Vacuolar protein sortin 99.9 1.3E-22 4.6E-27 156.1 9.8 106 1-112 249-354 (355)
5 3vlf_B 26S protease regulatory 99.7 3E-17 1E-21 104.4 6.0 56 1-105 32-88 (88)
6 3aji_B S6C, proteasome (prosom 99.7 1.5E-17 5.1E-22 104.3 4.1 52 1-102 32-83 (83)
7 3cf2_A TER ATPase, transitiona 99.7 8.4E-19 2.9E-23 147.7 -2.8 86 1-110 679-764 (806)
8 2dzn_B 26S protease regulatory 99.6 4.5E-16 1.6E-20 97.6 5.0 53 1-102 29-82 (82)
9 2krk_A 26S protease regulatory 99.5 1.8E-14 6.2E-19 91.3 4.3 43 1-92 42-84 (86)
10 3cf0_A Transitional endoplasmi 99.5 1.2E-13 4.2E-18 103.5 8.9 85 1-109 217-301 (301)
11 3d8b_A Fidgetin-like protein 1 99.4 2E-13 6.9E-18 104.7 5.7 75 1-112 283-357 (357)
12 3kw6_A 26S protease regulatory 99.4 2.9E-13 1E-17 83.7 4.3 23 1-23 34-56 (78)
13 3b9p_A CG5977-PA, isoform A; A 99.3 1.2E-12 4.1E-17 96.8 5.8 73 1-110 221-293 (297)
14 2x8a_A Nuclear valosin-contain 99.3 1.9E-12 6.4E-17 96.5 5.4 60 1-98 214-273 (274)
15 1ypw_A Transitional endoplasmi 99.2 1.2E-12 4.2E-17 110.0 -2.5 86 1-110 679-764 (806)
16 3vfd_A Spastin; ATPase, microt 99.1 1.5E-10 5E-15 89.3 7.5 74 1-111 314-387 (389)
17 4b4t_H 26S protease regulatory 99.1 2.7E-11 9.2E-16 97.0 3.2 56 1-105 411-467 (467)
18 4b4t_J 26S protease regulatory 99.0 5.1E-11 1.7E-15 94.0 2.4 55 1-104 350-404 (405)
19 4b4t_L 26S protease subunit RP 99.0 1.7E-10 5.7E-15 91.7 4.7 53 1-102 383-435 (437)
20 4b4t_M 26S protease regulatory 99.0 3.7E-10 1.3E-14 89.6 6.3 46 1-95 383-428 (434)
21 4b4t_I 26S protease regulatory 99.0 6.6E-11 2.3E-15 94.0 1.1 50 1-99 384-433 (437)
22 4b4t_K 26S protease regulatory 99.0 2E-10 7E-15 91.0 2.9 52 1-101 375-427 (428)
23 3cf2_A TER ATPase, transitiona 98.3 1.8E-07 6.2E-12 79.1 2.7 62 1-94 403-464 (806)
24 3h4m_A Proteasome-activating n 98.2 1.2E-06 4.2E-11 63.8 4.7 63 1-112 219-283 (285)
25 3hu3_A Transitional endoplasmi 98.1 3.4E-07 1.2E-11 73.3 -0.7 77 1-109 403-481 (489)
26 1ixz_A ATP-dependent metallopr 97.6 6.1E-05 2.1E-09 54.1 4.6 23 1-23 217-239 (254)
27 1lv7_A FTSH; alpha/beta domain 97.6 0.00012 4.2E-09 52.6 5.9 23 1-23 213-235 (257)
28 2ce7_A Cell division protein F 97.5 0.0003 1E-08 56.2 7.2 23 1-23 217-239 (476)
29 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00012 4.1E-09 58.8 4.1 23 1-23 232-254 (499)
30 1iy2_A ATP-dependent metallopr 97.3 0.00025 8.7E-09 51.7 4.7 23 1-23 241-263 (278)
31 2qz4_A Paraplegin; AAA+, SPG7, 97.2 4.1E-05 1.4E-09 54.7 -0.2 23 1-23 210-232 (262)
32 2r62_A Cell division protease 97.2 0.00011 3.8E-09 52.9 2.0 47 1-96 214-260 (268)
33 1ypw_A Transitional endoplasmi 95.5 0.0071 2.4E-07 50.9 3.0 25 1-25 403-427 (806)
34 3uk6_A RUVB-like 2; hexameric 72.3 2.3 7.8E-05 31.2 2.6 29 75-103 316-345 (368)
35 3mjd_A Orotate phosphoribosylt 70.6 4.3 0.00015 29.2 3.7 32 76-110 201-232 (232)
36 1pul_A Hypothetical protein C3 48.9 11 0.00036 24.8 2.3 15 75-89 79-93 (125)
37 1j7q_A CAVP, calcium vector pr 44.5 40 0.0014 18.8 4.4 34 75-108 29-62 (86)
38 1tiz_A Calmodulin-related prot 40.8 27 0.00091 18.2 2.9 25 76-100 17-41 (67)
39 1g41_A Heat shock protein HSLU 38.2 13 0.00044 29.3 1.6 81 5-95 269-354 (444)
40 1iie_A Protein (HLA-DR antigen 36.3 17 0.00059 21.8 1.6 29 79-107 26-54 (75)
41 1avs_A Troponin C; muscle cont 35.8 44 0.0015 18.8 3.5 26 76-101 36-61 (90)
42 1s6j_A CDPK, calcium-dependent 35.7 33 0.0011 19.1 2.8 27 75-101 38-64 (87)
43 3n2l_A OPRT, oprtase, orotate 35.7 22 0.00074 25.6 2.4 33 76-110 206-238 (238)
44 2b1u_A Calmodulin-like protein 35.6 29 0.001 18.3 2.5 26 75-100 21-46 (71)
45 2jrf_A Tubulin polymerization- 35.4 11 0.00037 26.4 0.7 23 75-97 68-94 (184)
46 1lh0_A OMP synthase; loop clos 33.0 33 0.0011 23.7 2.9 34 75-110 180-213 (213)
47 2kn2_A Calmodulin; S MAPK phos 32.9 53 0.0018 18.4 3.5 25 76-100 25-49 (92)
48 2kz2_A Calmodulin, CAM; TR2C, 32.6 64 0.0022 18.6 3.9 27 75-101 44-70 (94)
49 1wlm_A Protein CGI-38; structu 32.1 14 0.00047 25.0 0.8 23 75-97 75-101 (151)
50 3k21_A PFCDPK3, calcium-depend 31.9 1E+02 0.0035 20.0 5.3 35 75-109 137-173 (191)
51 2ktg_A Calmodulin, putative; e 31.3 43 0.0015 18.4 2.9 26 76-101 30-55 (85)
52 3fiq_A OBP1, RCG36470, odorant 30.9 39 0.0013 22.0 2.9 22 89-110 120-141 (157)
53 2k1v_A Insulin-like peptide IN 30.4 4.9 0.00017 19.3 -1.2 14 1-14 9-22 (26)
54 2lv7_A Calcium-binding protein 29.8 46 0.0016 19.9 2.9 28 74-101 50-77 (100)
55 1k9u_A Polcalcin PHL P 7; poll 28.8 42 0.0014 18.2 2.5 25 76-101 19-43 (78)
56 3nph_B Phycobilisome 32.1 kDa 28.5 20 0.0007 24.2 1.1 18 71-88 44-61 (148)
57 4ds7_A Calmodulin, CAM; protei 28.2 76 0.0026 18.9 3.8 27 75-101 99-125 (147)
58 2joj_A Centrin protein; N-term 28.1 37 0.0013 18.3 2.1 25 76-100 23-47 (77)
59 1mzb_A Ferric uptake regulatio 28.1 1.2E+02 0.0039 19.2 5.2 35 75-109 33-67 (136)
60 1nm8_A Carnitine O-acetyltrans 27.9 66 0.0022 26.2 4.3 38 72-110 17-54 (616)
61 2ovk_B RLC, myosin regulatory 27.8 82 0.0028 19.2 4.0 28 74-101 99-126 (153)
62 2ps1_A Orotate phosphoribosylt 27.4 47 0.0016 23.1 3.0 34 75-111 192-225 (226)
63 2opo_A Polcalcin CHE A 3; calc 27.1 54 0.0018 18.1 2.8 24 76-100 27-50 (86)
64 1c7v_A CAVP, calcium vector pr 27.0 48 0.0017 18.1 2.5 25 76-100 24-49 (81)
65 1ggw_A Protein (CDC4P); light 26.9 69 0.0024 19.2 3.5 27 75-101 20-46 (140)
66 2fe3_A Peroxide operon regulat 25.3 1.4E+02 0.0047 19.1 5.1 35 75-109 36-70 (145)
67 3hym_A Anaphase-promoting comp 25.3 30 0.001 16.9 1.1 17 93-109 11-27 (29)
68 1yx7_A Calsensin, LAN3-6 antig 24.8 57 0.002 17.8 2.6 26 75-100 22-49 (83)
69 2ct9_A Calcium-binding protein 24.5 1.4E+02 0.0048 19.4 4.9 27 75-101 128-155 (208)
70 3i5g_C Myosin catalytic light 24.4 88 0.003 19.9 3.8 28 75-102 100-127 (159)
71 3osj_A Phycobilisome LCM core- 23.7 36 0.0012 23.0 1.6 17 72-88 56-72 (147)
72 3ox6_A Calcium-binding protein 23.7 86 0.0029 18.7 3.5 27 75-101 103-130 (153)
73 3pru_C Phycobilisome 32.1 kDa 23.5 25 0.00085 23.9 0.8 17 72-88 50-66 (154)
74 1wdc_B Scallop myosin; calcium 23.5 86 0.003 19.1 3.5 27 75-101 33-59 (156)
75 1exr_A Calmodulin; high resolu 23.2 1.1E+02 0.0039 18.4 4.0 27 75-101 98-124 (148)
76 3fwb_A Cell division control p 23.2 88 0.003 19.0 3.5 27 75-101 111-137 (161)
77 2mys_C Myosin; muscle protein, 23.2 87 0.003 18.7 3.4 27 75-101 23-49 (149)
78 1top_A Troponin C; contractIle 23.1 97 0.0033 18.8 3.7 26 75-100 111-136 (162)
79 2xig_A Ferric uptake regulatio 23.0 1.5E+02 0.0053 19.0 4.8 35 75-109 41-75 (150)
80 2bl0_C Myosin regulatory light 23.0 69 0.0024 19.1 2.9 27 75-101 94-120 (142)
81 3ldz_A STAM-1, signal transduc 22.9 45 0.0015 21.7 2.0 35 77-111 81-119 (140)
82 2ovm_B NCOR, progesterone rece 22.6 50 0.0017 15.5 1.6 11 9-19 13-23 (26)
83 3t15_A Ribulose bisphosphate c 22.2 64 0.0022 23.0 2.9 18 72-89 261-278 (293)
84 2qac_A Myosin A tail domain in 22.2 1.3E+02 0.0043 18.1 4.1 27 75-101 99-125 (146)
85 2lhi_A Calmodulin, serine/thre 22.1 1.1E+02 0.0039 19.7 4.0 29 74-102 98-126 (176)
86 3qrx_A Centrin; calcium-bindin 22.1 1E+02 0.0036 18.9 3.7 26 75-100 116-141 (169)
87 3q8g_A CRAL-TRIO domain-contai 22.0 2.3E+02 0.008 20.6 6.1 33 77-109 59-93 (320)
88 4dra_E Centromere protein X; D 22.0 1.4E+02 0.0048 18.0 5.4 19 6-24 42-60 (84)
89 2c9o_A RUVB-like 1; hexameric 22.0 19 0.00065 27.7 0.0 32 73-104 362-397 (456)
90 3i5g_B Myosin regulatory light 21.9 96 0.0033 19.6 3.5 28 74-101 99-126 (153)
91 2o03_A Probable zinc uptake re 21.8 1.2E+02 0.0041 18.9 4.0 35 75-109 25-59 (131)
92 1dtl_A Cardiac troponin C; hel 21.8 1.1E+02 0.0037 18.6 3.7 26 76-101 35-60 (161)
93 3j04_B Myosin regulatory light 21.6 69 0.0023 19.2 2.7 26 75-100 22-47 (143)
94 2ovk_C Myosin catalytic light 21.4 1.1E+02 0.0039 18.6 3.8 27 75-101 100-126 (159)
95 1rwy_A Parvalbumin alpha; EF-h 21.3 95 0.0032 17.8 3.2 27 75-101 56-85 (109)
96 1r5l_A Alpha-TTP, protein (alp 21.2 1.1E+02 0.0039 21.0 4.0 33 77-109 31-65 (262)
97 1w7j_B Myosin light chain 1; m 21.2 79 0.0027 19.1 2.9 27 75-101 102-128 (151)
98 2w57_A Ferric uptake regulatio 21.1 1.4E+02 0.0049 19.1 4.3 35 75-109 32-66 (150)
99 1k2h_A S100A1, S-100 protein, 21.0 1E+02 0.0035 17.2 3.2 26 76-101 27-57 (93)
100 4a9a_C Translation machinery-a 20.7 59 0.002 21.8 2.2 35 74-108 14-50 (142)
101 2gpv_G Nuclear receptor corepr 20.4 54 0.0018 15.4 1.4 14 9-22 5-18 (26)
102 2zc2_A DNAD-like replication p 20.3 1.1E+02 0.0038 17.4 3.2 22 89-110 14-35 (78)
103 3ezq_B Protein FADD; apoptosis 20.2 1.8E+02 0.006 18.5 5.2 23 77-99 64-86 (122)
104 1m45_A MLC1P, myosin light cha 20.2 88 0.003 18.8 3.0 26 75-100 98-123 (148)
105 1rf8_B Eukaryotic initiation f 20.1 1E+02 0.0035 19.4 3.1 20 73-92 17-36 (100)
No 1
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.92 E-value=3e-25 Score=175.53 Aligned_cols=112 Identities=69% Similarity=1.099 Sum_probs=99.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|+|.+||+++.+.+|+...+....+..+..++.|+||+++++++.+++|.+++.+.+..++||++
T Consensus 333 t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 412 (444)
T 2zan_A 333 TDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMW 412 (444)
T ss_dssp TTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHH
Confidence 78999999999999999999999999888887654433333444567899999999999999999998888888999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~g 112 (112)
||..||++++|||+.+++.+|++|+++||++|
T Consensus 413 df~~a~~~~~ps~~~~~~~~~~~~~~~~~~~~ 444 (444)
T 2zan_A 413 DMLRSLSSTKPTVNEQDLLKLKKFTEDFGQEG 444 (444)
T ss_dssp HHHHHHHTCCCSCCHHHHHHHHHHTSSCTTTC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999988
No 2
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=169.00 Aligned_cols=112 Identities=70% Similarity=1.111 Sum_probs=96.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|+|.++|+++.+.+|+...+.+..+.+...+..|+||+++++++.++++.+++.+.+..++||++
T Consensus 211 t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 290 (322)
T 1xwi_A 211 TDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMS 290 (322)
T ss_dssp CTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHH
Confidence 78999999999999999999999998887765443322222223345699999999999999999998888888999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~g 112 (112)
||+.||++++|||+.+++.+|++|+++||++|
T Consensus 291 df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~ 322 (322)
T 1xwi_A 291 DMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 322 (322)
T ss_dssp HHHHHHHTCCCSCCHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999988
No 3
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.88 E-value=8.6e-23 Score=154.65 Aligned_cols=106 Identities=49% Similarity=0.868 Sum_probs=90.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|+|.++|+.....+++.+.... .....++||+++++++.++++.+++.+.+..++||++
T Consensus 216 t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 289 (322)
T 3eie_A 216 TEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTED------DETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIK 289 (322)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----------CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc------ccccccccccccccccccccccccccccccCCCCCHH
Confidence 6899999999999999999999998887766543221 1125699999999999999999998888888999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~g 112 (112)
||.+||+.++|||+.+++.+|++|+++||++|
T Consensus 290 df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~ 321 (322)
T 3eie_A 290 DFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 321 (322)
T ss_dssp HHHHHHHHSCCSSCTTHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999987
No 4
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.88 E-value=1.3e-22 Score=156.12 Aligned_cols=106 Identities=48% Similarity=0.831 Sum_probs=89.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|+|.++|+.+...+|+.+..... ....|+||+++++++.+++|.+++.+.+..++|+++
T Consensus 249 t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 322 (355)
T 2qp9_X 249 TEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD------ETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIK 322 (355)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----------CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc------cccccCcCCccccchhhcccccccccccccCCccHH
Confidence 78999999999999999999999988777765433211 123699999999999999999998887888999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~g 112 (112)
||..||+.++|||+.+++.+|++|+++||++|
T Consensus 323 df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~~ 354 (355)
T 2qp9_X 323 DFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 354 (355)
T ss_dssp HHHHHHHHSCCSSCHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999987
No 5
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.69 E-value=3e-17 Score=104.44 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=38.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.|+|+. .+.|+++
T Consensus 32 t~G~SGADl~~l~~eAa~~a~r~~-------------------------------------------------~~~i~~~ 62 (88)
T 3vlf_B 32 CPNSTGAELRSVCTEAGMFAIRAR-------------------------------------------------RKVATEK 62 (88)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHS-------------------------------------------------CSSBCHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhc-------------------------------------------------cccCCHH
Confidence 899999999999999999999981 1359999
Q ss_pred HHHHHHhhcCCCCCHH-HHHHHHHHH
Q psy3809 81 HILKSLETSKPTVNDD-DMVKLRKFM 105 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~-~l~~y~~w~ 105 (112)
||+.||+++.+++... .+.+|.+|+
T Consensus 63 df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 63 DFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhcCcccccchhHHhccC
Confidence 9999999999998665 599999996
No 6
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.69 E-value=1.5e-17 Score=104.28 Aligned_cols=52 Identities=21% Similarity=0.130 Sum_probs=38.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.+||+. .++|+++
T Consensus 32 t~G~SGADi~~l~~eA~~~a~~~~-------------------------------------------------~~~i~~~ 62 (83)
T 3aji_B 32 PDKISGADINSICQESGMLAVREN-------------------------------------------------RYIVLAK 62 (83)
T ss_dssp SCCCCHHHHHHHHHHHHHGGGTSC-------------------------------------------------CSSBCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhc-------------------------------------------------cCCcCHH
Confidence 799999999999999999998861 1469999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHH
Q psy3809 81 HILKSLETSKPTVNDDDMVKLR 102 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~ 102 (112)
||..||++++||++ +++++|+
T Consensus 63 df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 63 DFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHHHHHHHCC-----------
T ss_pred HHHHHHHHHccCch-HHHHhcC
Confidence 99999999999999 8888884
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.68 E-value=8.4e-19 Score=147.73 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.|||+.+.+...+.... ...+...+. ......++|+++
T Consensus 679 t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~------------------~~~~~~~~~------~~~~~~~~i~~~ 734 (806)
T 3cf2_A 679 TNGFSGADLTEICQRACKLAIRESIESEIRRERER------------------QTNPSAMEV------EEDDPVPEIRRD 734 (806)
T ss_dssp -------CHHHHHHHHHHHHHHHHHC-----------------------------------------------CCC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh------------------ccCcccccc------ccccccCccCHH
Confidence 79999999999999999999999887654332111 011111111 112246889999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
||++||++++||||+++|++|++|+++|++
T Consensus 735 df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 735 HFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp CCTTTC---------------CCCC-----
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999985
No 8
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.61 E-value=4.5e-16 Score=97.57 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.++|+. .+.|+++
T Consensus 29 t~G~SGADi~~l~~eAa~~ai~~~-------------------------------------------------~~~i~~~ 59 (82)
T 2dzn_B 29 NDSLSGAVIAAIMQEAGLRAVRKN-------------------------------------------------RYVILQS 59 (82)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTT-------------------------------------------------CSEECHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhc-------------------------------------------------cCCcCHH
Confidence 799999999999999999999971 1359999
Q ss_pred HHHHHHhhc-CCCCCHHHHHHHH
Q psy3809 81 HILKSLETS-KPTVNDDDMVKLR 102 (112)
Q Consensus 81 DF~~AL~~~-kpSvs~~~l~~y~ 102 (112)
||..|++++ +|+++++++..|.
T Consensus 60 df~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 60 DLEEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp HHHHHHHTTCC------------
T ss_pred HHHHHHHHHHcCcCChHHHHhhC
Confidence 999999998 6889998988873
No 9
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-14 Score=91.35 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.+||+. .++|+++
T Consensus 42 T~G~SGADL~~l~~eAa~~alr~~-------------------------------------------------~~~I~~~ 72 (86)
T 2krk_A 42 MPGASGAEVKGVCTEAGMYALRER-------------------------------------------------RVHVTQE 72 (86)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTT-------------------------------------------------CSEECHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHc-------------------------------------------------CCCCCHH
Confidence 799999999999999999999972 1469999
Q ss_pred HHHHHHhhcCCC
Q psy3809 81 HILKSLETSKPT 92 (112)
Q Consensus 81 DF~~AL~~~kpS 92 (112)
||+.||++++|.
T Consensus 73 df~~Al~~v~p~ 84 (86)
T 2krk_A 73 DFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHccC
Confidence 999999999874
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.48 E-value=1.2e-13 Score=103.49 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=59.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|++.++++.+........... ..+.. + +.+ .....+.|+++
T Consensus 217 ~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~------------------~~~~~--~---~~~-~~~~~~~v~~~ 272 (301)
T 3cf0_A 217 TNGFSGADLTEICQRACKLAIRESIESEIRRERERQ------------------TNPSA--M---EVE-EDDPVPEIRRD 272 (301)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------CCCBCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------------------ccccc--c---ccc-ccccCCccCHH
Confidence 689999999999999999999998755322110000 00000 0 000 11234789999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
||+.||++++||++++++.+|++|+++|.
T Consensus 273 ~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 273 HFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999984
No 11
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=104.70 Aligned_cols=75 Identities=23% Similarity=0.412 Sum_probs=59.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||..||++|++.++|++..... . .+.. ...++|+++
T Consensus 283 t~G~s~~dl~~l~~~a~~~~ir~l~~~~~-~----------------------------------~~~~--~~~~~i~~~ 325 (357)
T 3d8b_A 283 SDAFSGADMTQLCREASLGPIRSLQTADI-A----------------------------------TITP--DQVRPIAYI 325 (357)
T ss_dssp TTTCCHHHHHHHHHHHHTHHHHHCCC-----------------------------------------------CCCBCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhhhh-c----------------------------------cccc--cccCCcCHH
Confidence 68999999999999999999998642210 0 0000 124689999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~g 112 (112)
||..||+.++||++++++++|++|.+.||+.+
T Consensus 326 d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~~ 357 (357)
T 3d8b_A 326 DFENAFRTVRPSVSPKDLELYENWNKTFGCGK 357 (357)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999753
No 12
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.38 E-value=2.9e-13 Score=83.67 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+|||||||.+||++|+|.++|+
T Consensus 34 t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 34 MPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999997
No 13
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.33 E-value=1.2e-12 Score=96.76 Aligned_cols=73 Identities=19% Similarity=0.371 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|++.++|++..... +. +.. ...+.|+++
T Consensus 221 ~~g~~~~~l~~l~~~a~~~a~r~~~~~~~-~~----------------------------------~~~--~~~~~i~~~ 263 (297)
T 3b9p_A 221 TDGYSGSDLTALAKDAALEPIRELNVEQV-KC----------------------------------LDI--SAMRAITEQ 263 (297)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHTCC-------------------------------------------C--CCCCCCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhhhc-cc----------------------------------ccc--cccCCcCHH
Confidence 68999999999999999999998642210 00 000 023579999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
||..|++.++||++++++.+|++|.+.||.
T Consensus 264 d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 264 DFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp HHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999996
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.9e-12 Score=96.46 Aligned_cols=60 Identities=27% Similarity=0.409 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|++.++|+.+.... .. .......|+++
T Consensus 214 ~~g~sgadl~~l~~~a~~~a~~~~~~~~~----~~----------------------------------~~~~~~~i~~~ 255 (274)
T 2x8a_A 214 CDCYTGADLSALVREASICALRQEMARQK----SG----------------------------------NEKGELKVSHK 255 (274)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHHHHC-------------------------------------------------CCBCHH
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHhhcc----cc----------------------------------ccccCCeecHH
Confidence 46999999999999999999998653210 00 00113479999
Q ss_pred HHHHHHhhcCCCCCHHHH
Q psy3809 81 HILKSLETSKPTVNDDDM 98 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l 98 (112)
||+.||++++||++++++
T Consensus 256 df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 256 HFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhcCCCChhhc
Confidence 999999999999998875
No 15
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.16 E-value=1.2e-12 Score=110.02 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|++.++|+.+.....+..... . .+..+ +. ......++|+++
T Consensus 679 t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~------------~------~~~~~-----~~-~~~~~~~~i~~~ 734 (806)
T 1ypw_A 679 TNGFSGADLTEICQRACKLAIRESIESEIRRERERQ------------T------NPSAM-----EV-EEDDPVPEIRRD 734 (806)
T ss_dssp GSSSCCHHHHHHHHHHHHHHHSCC------------------------------------------------CCTTTTTT
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc------------c------ccccc-----cc-ccccccCccCHH
Confidence 689999999999999999999997654322111000 0 01110 00 112245789999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
||++|++.++|||+++++.+|++|.++|+.
T Consensus 735 ~f~~a~~~~~~svs~~~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 735 HFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp SSCCCCCC----------------------
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999764
No 16
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=89.35 Aligned_cols=74 Identities=20% Similarity=0.396 Sum_probs=58.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||+|+||..||++|++.++|++..... + .+.. ...+.|+.+
T Consensus 314 ~~g~~~~~l~~L~~~a~~~~~rel~~~~~-~----------------------------------~~~~--~~~~~i~~~ 356 (389)
T 3vfd_A 314 TDGYSGSDLTALAKDAALGPIRELKPEQV-K----------------------------------NMSA--SEMRNIRLS 356 (389)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHTSCCC--------------------------------------CCSS--SCCCCCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhhhh-h----------------------------------ccch--hhcCCcCHH
Confidence 68999999999999999999998643210 0 0000 123579999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCC
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKFMEDFGQE 111 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~ 111 (112)
||..||+.++||++.+.++.|++|.++||+.
T Consensus 357 d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 357 DFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp HHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999975
No 17
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=2.7e-11 Score=96.98 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=38.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.++|+- ...||++
T Consensus 411 T~GfSGADI~~l~~eAa~~Air~~-------------------------------------------------~~~it~~ 441 (467)
T 4b4t_H 411 CPNSTGAELRSVCTEAGMFAIRAR-------------------------------------------------RKVATEK 441 (467)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHT-------------------------------------------------CSSBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-------------------------------------------------CCccCHH
Confidence 799999999999999999999971 1258999
Q ss_pred HHHHHHhhcCCCCCH-HHHHHHHHHH
Q psy3809 81 HILKSLETSKPTVND-DDMVKLRKFM 105 (112)
Q Consensus 81 DF~~AL~~~kpSvs~-~~l~~y~~w~ 105 (112)
||+.||+++.++... ..+.+|.+|+
T Consensus 442 Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 442 DFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp HHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHhcCcccchhHHHHHhhC
Confidence 999999998665433 4678899996
No 18
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.1e-11 Score=93.96 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.|+|+- ...||++
T Consensus 350 t~G~SGADi~~l~~eA~~~Air~~-------------------------------------------------~~~vt~~ 380 (405)
T 4b4t_J 350 MNGCSGADVKGVCTEAGMYALRER-------------------------------------------------RIHVTQE 380 (405)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTT-------------------------------------------------CSBCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-------------------------------------------------CCCcCHH
Confidence 799999999999999999999861 1359999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHH
Q psy3809 81 HILKSLETSKPTVNDDDMVKLRKF 104 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~~w 104 (112)
||+.||+++.++.....+..++.|
T Consensus 381 Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 381 DFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHhCccccccchhHhhh
Confidence 999999998765544444444444
No 19
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.7e-10 Score=91.73 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=40.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.++|+- ...|+++
T Consensus 383 t~G~sGADi~~l~~eA~~~air~~-------------------------------------------------~~~i~~~ 413 (437)
T 4b4t_L 383 SDGFNGADIRNCATEAGFFAIRDD-------------------------------------------------RDHINPD 413 (437)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTT-------------------------------------------------CSSBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-------------------------------------------------CCCCCHH
Confidence 799999999999999999999861 1259999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHH
Q psy3809 81 HILKSLETSKPTVNDDDMVKLR 102 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~ 102 (112)
||..||+++.|+...+....|+
T Consensus 414 d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 414 DLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp HHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHhccCcccchhhh
Confidence 9999999999987655544443
No 20
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.7e-10 Score=89.64 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.++|+- ...|+++
T Consensus 383 t~G~sGADi~~l~~eA~~~a~r~~-------------------------------------------------~~~i~~~ 413 (434)
T 4b4t_M 383 TDEFNGAQLKAVTVEAGMIALRNG-------------------------------------------------QSSVKHE 413 (434)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHT-------------------------------------------------CSSBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-------------------------------------------------CCCcCHH
Confidence 799999999999999999999871 1359999
Q ss_pred HHHHHHhhcCCCCCH
Q psy3809 81 HILKSLETSKPTVND 95 (112)
Q Consensus 81 DF~~AL~~~kpSvs~ 95 (112)
||..||++++|+.+.
T Consensus 414 Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 414 DFVEGISEVQARKSK 428 (434)
T ss_dssp HHHHHHHSCSSSCCC
T ss_pred HHHHHHHHHhCCCCc
Confidence 999999999999874
No 21
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.99 E-value=6.6e-11 Score=94.05 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=43.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.++|+- ...||++
T Consensus 384 T~GfSGADI~~l~~eA~~~Air~~-------------------------------------------------~~~It~e 414 (437)
T 4b4t_I 384 KDDLSGADIQAMCTEAGLLALRER-------------------------------------------------RMQVTAE 414 (437)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTT-------------------------------------------------CSCBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-------------------------------------------------CCccCHH
Confidence 799999999999999999999871 1259999
Q ss_pred HHHHHHhhcCCCCCHHHHH
Q psy3809 81 HILKSLETSKPTVNDDDMV 99 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~ 99 (112)
||+.|++++.|+.+.++|+
T Consensus 415 Df~~Al~rv~~~~~~e~le 433 (437)
T 4b4t_I 415 DFKQAKERVMKNKVEENLE 433 (437)
T ss_dssp HHHHHHHHHHHHHCCCSSS
T ss_pred HHHHHHHHHhCCCChhhHH
Confidence 9999999999988776553
No 22
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.96 E-value=2e-10 Score=90.97 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=43.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+|||||||.+||++|+|.++|+- ...|+++
T Consensus 375 t~G~sgadi~~l~~eA~~~a~r~~-------------------------------------------------~~~i~~~ 405 (428)
T 4b4t_K 375 NDSLSGAVIAAIMQEAGLRAVRKN-------------------------------------------------RYVILQS 405 (428)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTT-------------------------------------------------CSSBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCC-------------------------------------------------CCCCCHH
Confidence 799999999999999999999871 1258999
Q ss_pred HHHHHHhh-cCCCCCHHHHHHH
Q psy3809 81 HILKSLET-SKPTVNDDDMVKL 101 (112)
Q Consensus 81 DF~~AL~~-~kpSvs~~~l~~y 101 (112)
||++|+.+ ++++.+.++++.|
T Consensus 406 d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 406 DLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp HHHHHHHHHSCSCCCSSCCCSC
T ss_pred HHHHHHHHhhCccCCccHhhhh
Confidence 99999976 6888887665544
No 23
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.33 E-value=1.8e-07 Score=79.07 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=44.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.+||++|+|.++++......... . .+..+.+....|+++
T Consensus 403 T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~---~-----------------------------~~~~e~~~~~~v~~~ 450 (806)
T 3cf2_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED---E-----------------------------TIDAEVMNSLAVTMD 450 (806)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC---C-----------------------------CCSHHHHHHCEECTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccccccccc---c-----------------------------ccchhhhccceeeHH
Confidence 79999999999999999999999764321110 0 000111123468999
Q ss_pred HHHHHHhhcCCCCC
Q psy3809 81 HILKSLETSKPTVN 94 (112)
Q Consensus 81 DF~~AL~~~kpSvs 94 (112)
||..|++.++||..
T Consensus 451 Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 451 DFRWALSQSNPSAL 464 (806)
T ss_dssp HHHHHHSSSSCCCC
T ss_pred HHHHHHHhCCCccc
Confidence 99999999988753
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=1.2e-06 Score=63.84 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=36.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||..||++|++.++++. ...|+.+
T Consensus 219 ~~g~~~~~i~~l~~~a~~~a~~~~-------------------------------------------------~~~I~~~ 249 (285)
T 3h4m_A 219 TEGCVGAELKAICTEAGMNAIREL-------------------------------------------------RDYVTMD 249 (285)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTT-------------------------------------------------CSSBCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhc-------------------------------------------------cCcCCHH
Confidence 689999999999999999998761 1359999
Q ss_pred HHHHHHhhcCC--CCCHHHHHHHHHHHHHhcCCC
Q psy3809 81 HILKSLETSKP--TVNDDDMVKLRKFMEDFGQEG 112 (112)
Q Consensus 81 DF~~AL~~~kp--Svs~~~l~~y~~w~~~fg~~g 112 (112)
||.+|++.+.+ +.+...-..|..|..+||+.|
T Consensus 250 d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 250 DFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp HHHHHHHHHHHHHCCC------------------
T ss_pred HHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 99999998743 234455788999999999764
No 25
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.08 E-value=3.4e-07 Score=73.32 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=46.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|.||||+||.+||++|++.++|+........ . ..++........||++
T Consensus 403 t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~---~-----------------------------~~~~~~~~~~~~vt~e 450 (489)
T 3hu3_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLE---D-----------------------------ETIDAEVMNSLAVTMD 450 (489)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT---C-----------------------------SSCCHHHHHHCCBCHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcccccccc---c-----------------------------cccchhhcccCcCCHH
Confidence 6899999999999999999999854321000 0 0011111233579999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHH--HHHHHhc
Q psy3809 81 HILKSLETSKPTVNDDDMVKLR--KFMEDFG 109 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~~l~~y~--~w~~~fg 109 (112)
||..||+.++||...+-+..+- .|..--|
T Consensus 451 df~~Al~~~~ps~~re~~~e~p~v~W~dig~ 481 (489)
T 3hu3_A 451 DFRWALSQSNPSALRETVVEVPQVTWEDIGG 481 (489)
T ss_dssp HHHHHHTSHHHHHHHGGGC------------
T ss_pred HHHHHHHhCCchhhhcccccCCCCCHHHcCC
Confidence 9999999999986554433333 3554333
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.61 E-value=6.1e-05 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+||||+||.++|++|++.++++
T Consensus 217 ~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 217 TPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999988764
No 27
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=0.00012 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.||||+||.++|++|++.++++
T Consensus 213 ~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 213 TPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999998765
No 28
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.46 E-value=0.0003 Score=56.23 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.||||+||.+||++|++.+.++
T Consensus 217 t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 217 TPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHc
Confidence 68999999999999999988764
No 29
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.39 E-value=0.00012 Score=58.83 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.||||+||.++|++|++.++|+
T Consensus 232 t~G~~gadL~~lv~~Aa~~A~~~ 254 (499)
T 2dhr_A 232 TPGFVGADLENLLNEAALLAARE 254 (499)
T ss_dssp SCSCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999887553
No 30
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.31 E-value=0.00025 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|+||+|+||.++|++|++.++++
T Consensus 241 ~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 241 TPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999887664
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.25 E-value=4.1e-05 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=18.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRL 23 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~ 23 (112)
|.||||+||.+||++|++.++++
T Consensus 210 ~~g~~~~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 210 TPGFSGADIANICNEAALHAARE 232 (262)
T ss_dssp CTTCCHHHHHHHHHHHHTC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 67999999999999999998765
No 32
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.22 E-value=0.00011 Score=52.93 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCCCCCCCCcCHH
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMH 80 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~~~~~a~~~~~~~~~~~~~~~~~it~~ 80 (112)
|+||||+||.++|++|++.++++ ....|+.+
T Consensus 214 ~~g~~g~dl~~l~~~a~~~a~~~-------------------------------------------------~~~~i~~~ 244 (268)
T 2r62_A 214 TAGLAGADLANIINEAALLAGRN-------------------------------------------------NQKEVRQQ 244 (268)
T ss_dssp SCSSCHHHHHHHHHHHHHTTSSS-------------------------------------------------CCCSCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh-------------------------------------------------ccCCcCHH
Confidence 67999999999999999875332 01358999
Q ss_pred HHHHHHhhcCCCCCHH
Q psy3809 81 HILKSLETSKPTVNDD 96 (112)
Q Consensus 81 DF~~AL~~~kpSvs~~ 96 (112)
||..|+..+.|+...+
T Consensus 245 ~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 245 HLKEAVERGIAGLEKK 260 (268)
T ss_dssp HHHTSCTTCCCCCC--
T ss_pred HHHHHHHHHhhcchhh
Confidence 9999999999987643
No 33
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.52 E-value=0.0071 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHh
Q psy3809 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (112)
Q Consensus 1 TeGySGaDI~~lcreA~m~plr~~~ 25 (112)
|.||+|+||..+|++|++.++|+..
T Consensus 403 t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 403 THGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCcchHHHHHHHHHHHHHHHhhhc
Confidence 6799999999999999999999854
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.35 E-value=2.3 Score=31.25 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=17.2
Q ss_pred CCcCHHHHHHHHhh-cCCCCCHHHHHHHHH
Q psy3809 75 PPVSMHHILKSLET-SKPTVNDDDMVKLRK 103 (112)
Q Consensus 75 ~~it~~DF~~AL~~-~kpSvs~~~l~~y~~ 103 (112)
..||.+|+.+|+.. +..+.+.+.+..|++
T Consensus 316 ~~It~~~v~~a~~~~~~~~~~~~~~~~~~~ 345 (368)
T 3uk6_A 316 TEVQVDDIKRVYSLFLDESRSTQYMKEYQD 345 (368)
T ss_dssp SSBCHHHHHHHHHHSBCHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 46999999999987 343334444555444
No 35
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=70.59 E-value=4.3 Score=29.19 Aligned_cols=32 Identities=9% Similarity=0.420 Sum_probs=28.2
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
.+++.|+.+.+... ++.++++.-++|.++||+
T Consensus 201 L~~~~~l~~~~~~~---~~~~~~~~~~~~~~~yg~ 232 (232)
T 3mjd_A 201 VTNFESIFEYVKEN---LDETMIDKFKQYRQKYGS 232 (232)
T ss_dssp EEEHHHHHHHHHHH---SCHHHHHHHHHHHHHHBC
T ss_pred EEeHHHHHHHHHhh---CCHHHHHHHHHHHHHhCc
Confidence 47889999888776 799999999999999995
No 36
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=48.85 E-value=11 Score=24.85 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=13.2
Q ss_pred CCcCHHHHHHHHhhc
Q psy3809 75 PPVSMHHILKSLETS 89 (112)
Q Consensus 75 ~~it~~DF~~AL~~~ 89 (112)
+.|+.++|.+||..+
T Consensus 79 r~I~f~qF~~aL~~l 93 (125)
T 1pul_A 79 KKATFDETKKVLAFV 93 (125)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred ceecHHHHHHHHHHH
Confidence 569999999999875
No 37
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=44.55 E-value=40 Score=18.76 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=23.9
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDF 108 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~f 108 (112)
..|+.++|..+|+.+...++..+......+-..+
T Consensus 29 G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~ 62 (86)
T 1j7q_A 29 NIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGP 62 (86)
T ss_dssp SCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCS
T ss_pred CcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3589999999999988888877733344444444
No 38
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=40.81 E-value=27 Score=18.21 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.6
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
.|+.++|..+|+.....++.+++..
T Consensus 17 ~i~~~el~~~l~~~~~~~~~~~~~~ 41 (67)
T 1tiz_A 17 KLSLDEFREVALAFSPYFTQEDIVK 41 (67)
T ss_dssp CEEHHHHHHHHHHTCTTSCHHHHHH
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 5889999999999988888776554
No 39
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=38.25 E-value=13 Score=29.26 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=44.9
Q ss_pred cHHHHHHH-HHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCccccCCC----CCCccccccccCCCCCCCCCCCcCH
Q psy3809 5 SGADISIV-VRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSP----STPGAVEMNFMDVPSDKLLEPPVSM 79 (112)
Q Consensus 5 SGaDI~~l-creA~m~plr~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~----~~~~a~~~~~~~~~~~~~~~~~it~ 79 (112)
+|.|.+.- +++|++..|...+..+++..+. .+..+..|.. ..|...-..+.+=-+-.+..+++|.
T Consensus 269 ~~~D~s~egvq~aLL~~le~~~~~~~~~~~d----------~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~lt~ 338 (444)
T 1g41_A 269 SGADVSREGVQRDLLPLVEGSTVSTKHGMVK----------TDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSA 338 (444)
T ss_dssp SSSHHHHHHHHHHHHHHHHCCEEEETTEEEE----------CTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCCCCH
T ss_pred CCCCchHHHHHHHHHHHhcccccccccceec----------CCcEEEEeccccccCChhhcchHHhcccceeeeCCCCCH
Confidence 47788875 8889988888765554442221 1123444432 1111100001000011245689999
Q ss_pred HHHHHHHhhcCCCCCH
Q psy3809 80 HHILKSLETSKPTVND 95 (112)
Q Consensus 80 ~DF~~AL~~~kpSvs~ 95 (112)
+||...+..-+.++.+
T Consensus 339 ~e~~~Il~~~~~~l~~ 354 (444)
T 1g41_A 339 ADFERILTEPHASLTE 354 (444)
T ss_dssp HHHHHHHHSSTTCHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 9999999988887653
No 40
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=36.31 E-value=17 Score=21.76 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy3809 79 MHHILKSLETSKPTVNDDDMVKLRKFMED 107 (112)
Q Consensus 79 ~~DF~~AL~~~kpSvs~~~l~~y~~w~~~ 107 (112)
.+.|.+-|+..|.+++..+-+.|+.|..+
T Consensus 26 n~sfl~NLk~LK~~m~~~dWk~FEsWM~~ 54 (75)
T 1iie_A 26 KGSFPENLRHLKNTMETIDWKVFESWMHH 54 (75)
T ss_dssp CSCHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcChhhHHhHHHHHHH
Confidence 37899999999999999999999999876
No 41
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=35.80 E-value=44 Score=18.80 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=21.2
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
.|+.++|..+|+.+...++.+++...
T Consensus 36 ~i~~~el~~~l~~~g~~~~~~~~~~l 61 (90)
T 1avs_A 36 DISTKELGTVMRMLGQNPTKEELDAI 61 (90)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 58899999999998888887776553
No 42
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=35.73 E-value=33 Score=19.11 Aligned_cols=27 Identities=7% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|+.....++.+++...
T Consensus 38 G~i~~~el~~~l~~~~~~~~~~~~~~l 64 (87)
T 1s6j_A 38 GTITFDELKDGLKRVGSELMESEIKDL 64 (87)
T ss_dssp SCEEHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 469999999999999888888776543
No 43
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=35.68 E-value=22 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=26.3
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
.++++|+.+.+.... .++ +++.+-++|+++||-
T Consensus 206 L~~~~~l~~~~~~~~-~~~-~~~~~~~~~r~~yg~ 238 (238)
T 3n2l_A 206 IVSLTDLITYLEQQG-NNT-EHLEAVKAYRAQYGI 238 (238)
T ss_dssp EEEHHHHHHHHHSSC-CHH-HHHHHHHHHHHHHBC
T ss_pred EEEHHHHHHHHHHcC-CcH-HHHHHHHHHHHHhCc
Confidence 478899988887643 344 789999999999983
No 44
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=35.57 E-value=29 Score=18.33 Aligned_cols=26 Identities=0% Similarity=0.179 Sum_probs=20.8
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
..|+.++|..+|+.....++.+++..
T Consensus 21 G~i~~~el~~~l~~~~~~~~~~~~~~ 46 (71)
T 2b1u_A 21 GHITVDELRRAMAGLGQPLPQEELDA 46 (71)
T ss_dssp SEEEHHHHHHHGGGTTCSSCHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 35889999999999887788776544
No 45
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=35.44 E-value=11 Score=26.45 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=16.7
Q ss_pred CCcCHHHHHHHHhhc---C-CCCCHHH
Q psy3809 75 PPVSMHHILKSLETS---K-PTVNDDD 97 (112)
Q Consensus 75 ~~it~~DF~~AL~~~---k-pSvs~~~ 97 (112)
+.|+.++|++||..+ + |-++.++
T Consensus 68 rkI~feqF~~aL~~lA~kk~~g~s~eE 94 (184)
T 2jrf_A 68 RVINYEEFKKALEELATKRFKGKSKEE 94 (184)
T ss_dssp SEEEHHHHHHHHHHHHHHHSTTSCHHH
T ss_pred eeecHHHHHHHHHHHHHHhcCCCCHHH
Confidence 569999999998875 2 3566554
No 46
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=32.97 E-value=33 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.584 Sum_probs=26.9
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
..++..|+...+.+. .-+ .+++...++|.++||-
T Consensus 180 sl~~~~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 213 (213)
T 1lh0_A 180 SIITLKDLIAYLEEK-PDM-AEHLAAVRAYREEFGV 213 (213)
T ss_dssp EEEEHHHHHHHHHHC-GGG-HHHHHHHHHHHHHHBC
T ss_pred EEEEHHHHHHHHHHc-CCc-HHHHHHHHHHHHHhCc
Confidence 347899999888754 344 6889999999999983
No 47
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=32.87 E-value=53 Score=18.44 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=20.1
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
.|+.++|..+|..+...++.+++..
T Consensus 25 ~i~~~el~~~l~~~g~~~~~~~~~~ 49 (92)
T 2kn2_A 25 YISASELRHVMINLGEKLTDEEVEQ 49 (92)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHH
T ss_pred eEcHHHHHHHHHHhCCCCCHHHHHH
Confidence 5889999999999887778776654
No 48
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=32.56 E-value=64 Score=18.62 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=22.1
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
-.|+.++|..+|+.....++.+++...
T Consensus 44 G~I~~~El~~~l~~~g~~~~~~e~~~l 70 (94)
T 2kz2_A 44 GYISAAELRHVMTNLGEKLTDEEVDEM 70 (94)
T ss_dssp SCBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 359999999999999888888776554
No 49
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11
Probab=32.14 E-value=14 Score=25.01 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=17.9
Q ss_pred CCcCHHHHHHHHhhc--C--CCCCHHH
Q psy3809 75 PPVSMHHILKSLETS--K--PTVNDDD 97 (112)
Q Consensus 75 ~~it~~DF~~AL~~~--k--pSvs~~~ 97 (112)
+.|+.++|++||..+ + +-++.++
T Consensus 75 rkI~f~qF~~aL~~lA~kr~kg~~~~e 101 (151)
T 1wlm_A 75 RVINYEEFKKALEELATKRFKGKSKEE 101 (151)
T ss_dssp SEEEHHHHHHHHHHTHHHHSSSCCHHH
T ss_pred ceecHHHHHHHHHHHHHHHcCCCCHHH
Confidence 569999999999986 3 4577655
No 50
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=31.85 E-value=1e+02 Score=19.96 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCcCHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHhc
Q psy3809 75 PPVSMHHILKSLET--SKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 75 ~~it~~DF~~AL~~--~kpSvs~~~l~~y~~w~~~fg 109 (112)
..|+.++|..+|.. ....+++++.+.....-+.+.
T Consensus 137 G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D 173 (191)
T 3k21_A 137 GEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVD 173 (191)
T ss_dssp SCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhc
Confidence 46888999999887 556677766555555555554
No 51
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=31.27 E-value=43 Score=18.44 Aligned_cols=26 Identities=0% Similarity=0.102 Sum_probs=20.7
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
.|+.++|..+|+.....++..++...
T Consensus 30 ~i~~~el~~~l~~~g~~~~~~~~~~~ 55 (85)
T 2ktg_A 30 KLTAEELGTVMRALGANPTKQKISEI 55 (85)
T ss_dssp EEEHHHHHHHHHTTSSCCCHHHHHHH
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 58899999999998877887766543
No 52
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=30.87 E-value=39 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhcC
Q psy3809 89 SKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 89 ~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
-.|.++++.+++|.+|.+..|-
T Consensus 120 R~~~~s~e~~e~F~~~~~~~Gl 141 (157)
T 3fiq_A 120 KREDLNKAQKQELRKLAEEYNI 141 (157)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHcCC
Confidence 4578999999999999999883
No 53
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=30.44 E-value=4.9 Score=19.31 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=10.7
Q ss_pred CCCCcHHHHHHHHH
Q psy3809 1 MYSYSGADISIVVR 14 (112)
Q Consensus 1 TeGySGaDI~~lcr 14 (112)
++|-|=+||..||-
T Consensus 9 ~~GCsmsDLs~lC~ 22 (26)
T 2k1v_A 9 TDGCSMTDLSALCX 22 (26)
T ss_dssp HTCBCHHHHTTTC-
T ss_pred HcCCcHHHHHHHHh
Confidence 46888899988874
No 54
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=29.83 E-value=46 Score=19.93 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=23.0
Q ss_pred CCCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 74 EPPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 74 ~~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
.-.|+.++|..+|+...-.++.++++..
T Consensus 50 ~G~I~~~El~~~l~~lg~~~~~~ei~~l 77 (100)
T 2lv7_A 50 NGFISKQELGTAMRSLGYMPNEVELEVI 77 (100)
T ss_dssp SSCBCHHHHHHHHHHHTCCCCTTTHHHH
T ss_pred CCcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3569999999999998888888777654
No 55
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=28.77 E-value=42 Score=18.21 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=19.8
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
.|+.++|..+|+.+. .++.+++...
T Consensus 19 ~i~~~el~~~l~~~g-~~~~~~~~~~ 43 (78)
T 1k9u_A 19 KISLSELTDALRTLG-STSADEVQRM 43 (78)
T ss_dssp EECHHHHHHHHHHHH-TCCHHHHHHH
T ss_pred cCcHHHHHHHHHHhC-CCCHHHHHHH
Confidence 588999999999887 7777766543
No 56
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=28.47 E-value=20 Score=24.19 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=15.0
Q ss_pred CCCCCCcCHHHHHHHHhh
Q psy3809 71 KLLEPPVSMHHILKSLET 88 (112)
Q Consensus 71 ~~~~~~it~~DF~~AL~~ 88 (112)
++....||+.||..+|.+
T Consensus 44 qLrnG~ItVReFVR~Lak 61 (148)
T 3nph_B 44 LLRGREISVRDFVRAVAL 61 (148)
T ss_dssp HHHTTSSCHHHHHHHHHT
T ss_pred HHhcCCccHHHHHHHHHc
Confidence 356678999999999987
No 57
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=28.17 E-value=76 Score=18.92 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|+.....++.+++...
T Consensus 99 G~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (147)
T 4ds7_A 99 GLISAAELKHVLTSIGEKLTDAEVDEM 125 (147)
T ss_dssp SEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CeECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 469999999999999988998876543
No 58
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=28.09 E-value=37 Score=18.31 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=19.9
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
.|+.++|..+|+.....++.+++..
T Consensus 23 ~i~~~el~~~l~~~g~~~~~~~~~~ 47 (77)
T 2joj_A 23 SIDYHELKVAMRALGFDVKKPEILE 47 (77)
T ss_dssp EEEHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 5889999999999877777766544
No 59
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.06 E-value=1.2e+02 Score=19.16 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=30.8
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
.++|.+++.+.|++..|+++..-+-+.-++-.+.|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 47999999999999999999999888888777766
No 60
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=27.88 E-value=66 Score=26.24 Aligned_cols=38 Identities=18% Similarity=0.505 Sum_probs=30.5
Q ss_pred CCCCCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC
Q psy3809 72 LLEPPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 72 ~~~~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
+.+|++. +=+.+=|+.++|-+++++.++.++..++|..
T Consensus 17 LPvP~L~-~Tl~rYL~sv~Pl~~~ee~~~t~~~v~eF~~ 54 (616)
T 1nm8_A 17 LPVPPLQ-QSLDHYLKALQPIVSEEEWAHTKQLVDEFQA 54 (616)
T ss_dssp CCCCCHH-HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHS
T ss_pred CCCCCHH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHhh
Confidence 4456552 4456778889999999999999999999976
No 61
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=27.76 E-value=82 Score=19.20 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=23.4
Q ss_pred CCCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 74 EPPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 74 ~~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
...|+.++|..+|......++.+++...
T Consensus 99 ~G~I~~~el~~~l~~~g~~~~~~~~~~~ 126 (153)
T 2ovk_B 99 QGFIPEDYLKDLLENMGDNFSKEEIKNV 126 (153)
T ss_dssp SSCCCHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred CCeEcHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3579999999999999888998876654
No 62
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
Probab=27.39 E-value=47 Score=23.08 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=27.5
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCC
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFGQE 111 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg~~ 111 (112)
..++.+|+...+.+... .+++...++|.++||-+
T Consensus 192 sl~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~ 225 (226)
T 2ps1_A 192 SIVSLIHIITYLEGRIT---AEEKSKIEQYLQTYGAS 225 (226)
T ss_dssp EEEEHHHHHHHHGGGCC---SSHHHHHHHHHHHHBCC
T ss_pred EEecHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence 34789999988877543 67899999999999964
No 63
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=27.11 E-value=54 Score=18.12 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.0
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
.|+.++|..+|+... .++.+++..
T Consensus 27 ~i~~~el~~~l~~~g-~~~~~~~~~ 50 (86)
T 2opo_A 27 KISSSELGDALKTLG-SVTPDEVRR 50 (86)
T ss_dssp EEEHHHHHHHHHTTT-TCCHHHHHH
T ss_pred CcCHHHHHHHHHHcC-CCCHHHHHH
Confidence 588899999999888 777766554
No 64
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=27.02 E-value=48 Score=18.09 Aligned_cols=25 Identities=4% Similarity=0.141 Sum_probs=18.9
Q ss_pred CcCHHHHHHHHhhcC-CCCCHHHHHH
Q psy3809 76 PVSMHHILKSLETSK-PTVNDDDMVK 100 (112)
Q Consensus 76 ~it~~DF~~AL~~~k-pSvs~~~l~~ 100 (112)
.|+.++|..+|..+. ..++.+++..
T Consensus 24 ~i~~~el~~~l~~~g~~~~~~~~~~~ 49 (81)
T 1c7v_A 24 VIDFDEFKFIMQKVGEEPLTDAEVEE 49 (81)
T ss_dssp EECHHHHHHHSSTTTTCCCCHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCCHHHHHH
Confidence 488888888888887 7777766544
No 65
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=26.91 E-value=69 Score=19.15 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=22.1
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|+......+.+++..+
T Consensus 20 G~i~~~el~~~l~~~g~~~~~~~~~~~ 46 (140)
T 1ggw_A 20 GRIPKTSIGDLLRACGQNPTLAEITEI 46 (140)
T ss_dssp SEECHHHHHHHHHHTSCCCCHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 358999999999998888888777664
No 66
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.31 E-value=1.4e+02 Score=19.07 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
.++|.+++.+.|+...|+++..-+-+.-++-.+-|
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 47999999999999999999999888888777766
No 67
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=25.30 E-value=30 Score=16.93 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHHhc
Q psy3809 93 VNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 93 vs~~~l~~y~~w~~~fg 109 (112)
++.+|+..|+.-.++..
T Consensus 11 l~~eDi~e~E~~rke~e 27 (29)
T 3hym_A 11 LKLDDIEEFENIRKDLE 27 (29)
T ss_dssp CCSGGGHHHHHHHHHC-
T ss_pred ecHHHHHHHHHHHHHHh
Confidence 46678888888777643
No 68
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=24.80 E-value=57 Score=17.80 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=20.1
Q ss_pred CCcCHHHHHHHHhhcC--CCCCHHHHHH
Q psy3809 75 PPVSMHHILKSLETSK--PTVNDDDMVK 100 (112)
Q Consensus 75 ~~it~~DF~~AL~~~k--pSvs~~~l~~ 100 (112)
-.|+.++|..+|.... ..++.+++..
T Consensus 22 G~i~~~el~~~l~~~~~~~~~~~~~~~~ 49 (83)
T 1yx7_A 22 GYVTALELQTFMVTLDAYKALSKDKVKE 49 (83)
T ss_dssp SSCSHHHHHHHHHHHTTCTTTTTTTTHH
T ss_pred CcCcHHHHHHHHHHHccccCCCHHHHHH
Confidence 3588999999999887 6677666554
No 69
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=24.52 E-value=1.4e+02 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=22.7
Q ss_pred CCcCHHHHHHHHhhc-CCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETS-KPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~-kpSvs~~~l~~y 101 (112)
..|+.++|..+|... ...++.+++..+
T Consensus 128 G~Is~~El~~~l~~~~g~~~s~~~~~~l 155 (208)
T 2ct9_A 128 DKISRDELLQVLRMMVGVNISDEQLGSI 155 (208)
T ss_dssp SEECHHHHHHHHHHHSCTTCCHHHHHHH
T ss_pred CEEcHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 469999999999986 888898887764
No 70
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.38 E-value=88 Score=19.95 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=22.9
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLR 102 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~ 102 (112)
..|+.++|..+|..+...++.+++...-
T Consensus 100 G~I~~~el~~~l~~~g~~ls~~e~~~l~ 127 (159)
T 3i5g_C 100 GLISSAEIRNVLKMLGERITEDQCNDIF 127 (159)
T ss_dssp SEECHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4699999999999998888988776543
No 71
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=23.73 E-value=36 Score=22.96 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=14.1
Q ss_pred CCCCCcCHHHHHHHHhh
Q psy3809 72 LLEPPVSMHHILKSLET 88 (112)
Q Consensus 72 ~~~~~it~~DF~~AL~~ 88 (112)
+....||+.||..+|.+
T Consensus 56 l~nG~ItVReFIR~Lak 72 (147)
T 3osj_A 56 VRNGDISMKEFVRRLAK 72 (147)
T ss_dssp HHHTSSCHHHHHHHHHH
T ss_pred HHcCCccHHHHHHHHHc
Confidence 45667999999999877
No 72
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=23.68 E-value=86 Score=18.75 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=22.1
Q ss_pred CCcCHHHHHHHHhh-cCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLET-SKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~-~kpSvs~~~l~~y 101 (112)
..|+.++|..+|+. ....++.+++...
T Consensus 103 G~i~~~el~~~l~~~~~~~~~~~~~~~~ 130 (153)
T 3ox6_A 103 GEISTSELREAMRALLGHQVGHRDIEEI 130 (153)
T ss_dssp SSBCHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred CcCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 46999999999999 7888888776543
No 73
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=23.49 E-value=25 Score=23.94 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=14.3
Q ss_pred CCCCCcCHHHHHHHHhh
Q psy3809 72 LLEPPVSMHHILKSLET 88 (112)
Q Consensus 72 ~~~~~it~~DF~~AL~~ 88 (112)
+....||+.||..+|.+
T Consensus 50 l~nG~ItVReFVR~Lak 66 (154)
T 3pru_C 50 LTNGSISVREFVRTVAK 66 (154)
T ss_dssp HHHTSSCHHHHHHHHHT
T ss_pred HHcCCcCHHHHHHHHHc
Confidence 45678999999999987
No 74
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=23.47 E-value=86 Score=19.14 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=20.5
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|+.....++..++..+
T Consensus 33 G~i~~~el~~~l~~~g~~~~~~~~~~~ 59 (156)
T 1wdc_B 33 GFVSKEDIKAISEQLGRAPDDKELTAM 59 (156)
T ss_dssp SSCCHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 358889999999888777777666554
No 75
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=23.24 E-value=1.1e+02 Score=18.45 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=22.1
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|..+...++.+++...
T Consensus 98 G~I~~~el~~~l~~~g~~~~~~~~~~~ 124 (148)
T 1exr_A 98 GLISAAELRHVMTNLGEKLTDDEVDEM 124 (148)
T ss_dssp SCBCHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 468999999999999888888776543
No 76
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=23.23 E-value=88 Score=19.00 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|+.....++.+++...
T Consensus 111 G~i~~~el~~~l~~~~~~~~~~~~~~~ 137 (161)
T 3fwb_A 111 GKISIKNLRRVAKELGETLTDEELRAM 137 (161)
T ss_dssp SEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CeEeHHHHHHHHHHhCCCCCHHHHHHH
Confidence 469999999999998888888776543
No 77
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=23.20 E-value=87 Score=18.68 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=20.1
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|.......+..++..+
T Consensus 23 G~i~~~el~~~l~~~~~~~~~~~~~~l 49 (149)
T 2mys_C 23 AKITASQVGDIARALGQNPTNAEINKI 49 (149)
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 358889999999888777777665543
No 78
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=23.14 E-value=97 Score=18.83 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=20.9
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
..|+.++|..+|......++.+++..
T Consensus 111 G~I~~~e~~~~l~~~g~~~~~~~~~~ 136 (162)
T 1top_A 111 GFIDIEELGEILRATGEHVTEEDIED 136 (162)
T ss_dssp SCBCHHHHHHHHHTTTCCCCHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 45899999999999888888776544
No 79
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.03 E-value=1.5e+02 Score=18.98 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=30.6
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
.++|.+++.+.|+...|+++..-+-+.-++-.+.|
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 47999999999999999999998888888777766
No 80
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=23.00 E-value=69 Score=19.14 Aligned_cols=27 Identities=4% Similarity=0.078 Sum_probs=22.4
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|+.....++.+++...
T Consensus 94 G~i~~~el~~~l~~~g~~~~~~~~~~~ 120 (142)
T 2bl0_C 94 GYIPKAALQDALLNLGDRLKPHEFAEF 120 (142)
T ss_dssp SCEEHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred CcCcHHHHHHHHHHcCCCCCHHHHHHH
Confidence 469999999999999888888776543
No 81
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.92 E-value=45 Score=21.69 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=24.1
Q ss_pred cCHHHHHHHH----hhcCCCCCHHHHHHHHHHHHHhcCC
Q psy3809 77 VSMHHILKSL----ETSKPTVNDDDMVKLRKFMEDFGQE 111 (112)
Q Consensus 77 it~~DF~~AL----~~~kpSvs~~~l~~y~~w~~~fg~~ 111 (112)
|.-.+|..-| .+..+.|...-+.-...|...|..+
T Consensus 81 vas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 81 VCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4445565444 4556667777788899999999753
No 82
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=22.64 E-value=50 Score=15.55 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q psy3809 9 ISIVVRDALMQ 19 (112)
Q Consensus 9 I~~lcreA~m~ 19 (112)
|..++|.|+|.
T Consensus 13 leaiirkalmg 23 (26)
T 2ovm_B 13 LEDIIRKALMG 23 (26)
T ss_pred HHHHHHHHHhh
Confidence 66788888774
No 83
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=22.24 E-value=64 Score=23.02 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=12.2
Q ss_pred CCCCCcCHHHHHHHHhhc
Q psy3809 72 LLEPPVSMHHILKSLETS 89 (112)
Q Consensus 72 ~~~~~it~~DF~~AL~~~ 89 (112)
+..+.++..++.++-..+
T Consensus 261 ~~~~~~~~~~l~~~g~~~ 278 (293)
T 3t15_A 261 FEQPKMTIEKLLEYGNML 278 (293)
T ss_dssp CCCCCCCHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHH
Confidence 345668888877776555
No 84
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=22.17 E-value=1.3e+02 Score=18.10 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|......++.+++...
T Consensus 99 G~I~~~el~~~l~~~g~~~~~~~~~~~ 125 (146)
T 2qac_A 99 GYLTKSQMKNILTTWGDALTDQEAIDA 125 (146)
T ss_dssp SEEEHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 469999999999999888888776654
No 85
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.12 E-value=1.1e+02 Score=19.71 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=24.6
Q ss_pred CCCcCHHHHHHHHhhcCCCCCHHHHHHHH
Q psy3809 74 EPPVSMHHILKSLETSKPTVNDDDMVKLR 102 (112)
Q Consensus 74 ~~~it~~DF~~AL~~~kpSvs~~~l~~y~ 102 (112)
.-.|+.++|..+|......++.+++...-
T Consensus 98 ~G~I~~~el~~~l~~~g~~~~~~ei~~l~ 126 (176)
T 2lhi_A 98 DGLISAAELKHVLTSIGEKLTDAEVDDML 126 (176)
T ss_dssp SSSBCHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHcCcccchHHHHHHH
Confidence 35799999999999999999998876654
No 86
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=22.07 E-value=1e+02 Score=18.93 Aligned_cols=26 Identities=0% Similarity=0.239 Sum_probs=21.7
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
..|+.++|..+|......++.+++..
T Consensus 116 G~i~~~el~~~l~~~g~~~~~~~~~~ 141 (169)
T 3qrx_A 116 GTITIKDLRRVAKELGENLTEEELQE 141 (169)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 46999999999999988888877654
No 87
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=22.04 E-value=2.3e+02 Score=20.58 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=23.6
Q ss_pred cCHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHhc
Q psy3809 77 VSMHHILKSLETSKPTVND--DDMVKLRKFMEDFG 109 (112)
Q Consensus 77 it~~DF~~AL~~~kpSvs~--~~l~~y~~w~~~fg 109 (112)
.+-.-+..=|+..+=.|.. +.|.+|.+|+++|+
T Consensus 59 ~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~ 93 (320)
T 3q8g_A 59 LDDSTLLRFLRARKFDINASVEMFVETERWREEYG 93 (320)
T ss_dssp CSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 3444455666666666655 57999999999997
No 88
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=21.97 E-value=1.4e+02 Score=18.00 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3809 6 GADISIVVRDALMQPVRLV 24 (112)
Q Consensus 6 GaDI~~lcreA~m~plr~~ 24 (112)
+.=|..+++||..+++...
T Consensus 42 aeyl~iFV~EAv~RA~~~a 60 (84)
T 4dra_E 42 VELLKVFVVEAAVRGVRQA 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4457788999999888864
No 89
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=21.96 E-value=19 Score=27.65 Aligned_cols=32 Identities=3% Similarity=0.088 Sum_probs=19.4
Q ss_pred CCCCcCHHHHHHHHhhc----CCCCCHHHHHHHHHH
Q psy3809 73 LEPPVSMHHILKSLETS----KPTVNDDDMVKLRKF 104 (112)
Q Consensus 73 ~~~~it~~DF~~AL~~~----kpSvs~~~l~~y~~w 104 (112)
..++++.++..+.|+.. .-.++++.+....+.
T Consensus 362 ~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~ 397 (456)
T 2c9o_A 362 RTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEI 397 (456)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 45677888888777643 334666655544443
No 90
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=21.87 E-value=96 Score=19.63 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=23.4
Q ss_pred CCCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 74 EPPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 74 ~~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
...|+.++|..+|..+-..+|.+++...
T Consensus 99 ~G~I~~~el~~~l~~~g~~ls~~ei~~~ 126 (153)
T 3i5g_B 99 QGFIPEDYLKDLLENMGDNFSKEEIKNV 126 (153)
T ss_dssp SSCCCHHHHHHHHHSSSSCCCHHHHHHH
T ss_pred CCeEeHHHHHHHHHHcCCcCCHHHHHHH
Confidence 3579999999999999888998887643
No 91
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.84 E-value=1.2e+02 Score=18.92 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=30.3
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
.++|.+++.+.|++..|+++..-+-+.-++-.+.|
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 46899999999999999999998888888777665
No 92
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=21.83 E-value=1.1e+02 Score=18.63 Aligned_cols=26 Identities=8% Similarity=0.196 Sum_probs=20.7
Q ss_pred CcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 76 PVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 76 ~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
.|+.++|..+|+......+..++...
T Consensus 35 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 60 (161)
T 1dtl_A 35 SISTKELGKVMRMLGQNPTPEELQEM 60 (161)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred cCcHHHHHHHHHHcCCCCCHHHHHHH
Confidence 58899999999998877777766553
No 93
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=21.59 E-value=69 Score=19.20 Aligned_cols=26 Identities=8% Similarity=0.049 Sum_probs=20.6
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
..|+.++|..+|+.....++..++..
T Consensus 22 G~i~~~el~~~l~~~g~~~~~~~~~~ 47 (143)
T 3j04_B 22 GFIDKEDLHDMLASMGKNPTDEYLEG 47 (143)
T ss_dssp TCCCHHHHHHHHHHTSCCCCHHHHHT
T ss_pred CCcCHHHHHHHHHHhCCCCCHHHHHH
Confidence 35889999999999887777776654
No 94
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=21.39 E-value=1.1e+02 Score=18.63 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|......++.+++...
T Consensus 100 G~I~~~El~~~l~~~g~~~~~~~~~~~ 126 (159)
T 2ovk_C 100 GLISSAEIRNVLKMLGERITEDQCNDI 126 (159)
T ss_dssp SEECHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 468999999999988888887776543
No 95
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=21.33 E-value=95 Score=17.80 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=20.6
Q ss_pred CCcCHHHHHHHHhhc---CCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETS---KPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~---kpSvs~~~l~~y 101 (112)
-.|+.++|..+|+.. ...++.+++...
T Consensus 56 G~I~~~el~~~l~~~~~~g~~~~~~~~~~~ 85 (109)
T 1rwy_A 56 GFIEEDELGSILKGFSSDARDLSAKETKTL 85 (109)
T ss_dssp SEECHHHHHTHHHHHCTTCCCCCHHHHHHH
T ss_pred CeEcHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 369999999999988 566777766543
No 96
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=21.24 E-value=1.1e+02 Score=20.97 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=22.8
Q ss_pred cCHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHhc
Q psy3809 77 VSMHHILKSLETSKPTVND--DDMVKLRKFMEDFG 109 (112)
Q Consensus 77 it~~DF~~AL~~~kpSvs~--~~l~~y~~w~~~fg 109 (112)
.+-.-+..=|+..+-+|.. +.|.+|.+|+++|+
T Consensus 31 ~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~ 65 (262)
T 1r5l_A 31 LTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP 65 (262)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh
Confidence 3444455556666666654 57999999999886
No 97
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=21.19 E-value=79 Score=19.12 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=21.9
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKL 101 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y 101 (112)
..|+.++|..+|......++.+++...
T Consensus 102 G~I~~~el~~~l~~~g~~~~~~~~~~~ 128 (151)
T 1w7j_B 102 GKVMGAELRHVLTTLGEKMTEEEVETV 128 (151)
T ss_dssp SEEEHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred CcCcHHHHHHHHHHcCCCCCHHHHHHH
Confidence 469999999999998888888776543
No 98
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.10 E-value=1.4e+02 Score=19.14 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=30.6
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVKLRKFMEDFG 109 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~y~~w~~~fg 109 (112)
.++|.+++.+.|+..-|+++..-+-+..++-.+.|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 47999999999999999999999888888777766
No 99
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=21.02 E-value=1e+02 Score=17.17 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.5
Q ss_pred CcCHHHHHHHHhh-----cCCCCCHHHHHHH
Q psy3809 76 PVSMHHILKSLET-----SKPTVNDDDMVKL 101 (112)
Q Consensus 76 ~it~~DF~~AL~~-----~kpSvs~~~l~~y 101 (112)
.|+.++|..+|+. ....++.+++...
T Consensus 27 ~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~ 57 (93)
T 1k2h_A 27 KLSKKELKDLLQTELSSFLDVQKDADAVDKI 57 (93)
T ss_dssp SCCHHHHHHHHHHHTHHHHHCCCCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 5889999999987 6666777665543
No 100
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=20.69 E-value=59 Score=21.77 Aligned_cols=35 Identities=6% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCcCHHHHHHHHh-hcCC-CCCHHHHHHHHHHHHHh
Q psy3809 74 EPPVSMHHILKSLE-TSKP-TVNDDDMVKLRKFMEDF 108 (112)
Q Consensus 74 ~~~it~~DF~~AL~-~~kp-Svs~~~l~~y~~w~~~f 108 (112)
.+.||+++|.+-=+ ++.+ .+||=-++-|.+|.++.
T Consensus 14 ~~~ItlEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k 50 (142)
T 4a9a_C 14 QPKITLEEFIETERGKLDKSKLTPITIANFAQWKKDH 50 (142)
T ss_dssp CCCCCHHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 46899999985433 3323 35666688999998764
No 101
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=20.35 E-value=54 Score=15.38 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q psy3809 9 ISIVVRDALMQPVR 22 (112)
Q Consensus 9 I~~lcreA~m~plr 22 (112)
|..++|.|.|--..
T Consensus 5 leaiirkalmg~yd 18 (26)
T 2gpv_G 5 LEAIIRKALMGKYD 18 (26)
T ss_pred HHHHHHHHHccchh
Confidence 56777777776443
No 102
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=20.32 E-value=1.1e+02 Score=17.36 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=18.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhcC
Q psy3809 89 SKPTVNDDDMVKLRKFMEDFGQ 110 (112)
Q Consensus 89 ~kpSvs~~~l~~y~~w~~~fg~ 110 (112)
..+.+|+.+++....|..++|.
T Consensus 14 ~gr~ls~~e~~~i~~w~~~~~~ 35 (78)
T 2zc2_A 14 LGRMLSPFELEDLQKTVSDDKT 35 (78)
T ss_dssp HTSCCCHHHHHHHHHHHTTTCC
T ss_pred hCCCCCHHHHHHHHHHHHHhCC
Confidence 4567899999999999988664
No 103
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=20.20 E-value=1.8e+02 Score=18.48 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=15.3
Q ss_pred cCHHHHHHHHhhcCCCCCHHHHH
Q psy3809 77 VSMHHILKSLETSKPTVNDDDMV 99 (112)
Q Consensus 77 it~~DF~~AL~~~kpSvs~~~l~ 99 (112)
-|.+.+.+||.++...-..+.|+
T Consensus 64 ATv~~L~~AL~~i~~~diAe~Ie 86 (122)
T 3ezq_B 64 ATVAHLVGALRSCQMNLVADLVQ 86 (122)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHH
Confidence 46788888888887654444433
No 104
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=20.17 E-value=88 Score=18.81 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=21.7
Q ss_pred CCcCHHHHHHHHhhcCCCCCHHHHHH
Q psy3809 75 PPVSMHHILKSLETSKPTVNDDDMVK 100 (112)
Q Consensus 75 ~~it~~DF~~AL~~~kpSvs~~~l~~ 100 (112)
..|+.++|..+|......++.+++..
T Consensus 98 G~I~~~el~~~l~~~g~~~~~~~~~~ 123 (148)
T 1m45_A 98 GKVSVGDLRYMLTGLGEKLTDAEVDE 123 (148)
T ss_dssp SEEEHHHHHHHHHHSTTCCCHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 46999999999999988888877654
No 105
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1
Probab=20.12 E-value=1e+02 Score=19.37 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.6
Q ss_pred CCCCcCHHHHHHHHhhcCCC
Q psy3809 73 LEPPVSMHHILKSLETSKPT 92 (112)
Q Consensus 73 ~~~~it~~DF~~AL~~~kpS 92 (112)
..+.+++..|.++|+++++-
T Consensus 17 ~d~~~t~S~~L~~L~sAr~I 36 (100)
T 1rf8_B 17 DDGTNTVSHILNVLKDATPI 36 (100)
T ss_dssp TTSCCCHHHHHHHHHTCBCC
T ss_pred CCCcccHHHHHHHHhhCcCc
Confidence 34568999999999998874
Done!