RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3809
         (112 letters)



>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
           N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
           hamster (Cricetulus griseus) [TaxId: 10029]}
          Length = 246

 Score = 32.2 bits (72), Expect = 0.008
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)

Query: 4   YSGADISIVVRDALM--------QPVRLVQSATHFVRTSGPSPVD 40
             G  + I ++  LM         P   V+     +R  G SP+D
Sbjct: 202 VKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGASPLD 246


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 31.7 bits (71), Expect = 0.010
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 4   YSGADISIVVRDALMQPVR-LVQSATHFVRTSGPSPVDPSKTVDDLL 49
           +SGAD++ + + A    +R  ++S     R    +P       DD +
Sbjct: 212 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 258


>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 31.0 bits (70), Expect = 0.021
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 4   YSGADISIVVRDALMQPVR 22
           + GAD+  ++ +A +   R
Sbjct: 213 FVGADLENLLNEAALLAAR 231


>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 30.8 bits (68), Expect = 0.027
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 1   MYSYSGADISIVVRDALMQPVR 22
            + + GAD++ +  +A +Q +R
Sbjct: 203 THGHVGADLAALCSEAALQAIR 224


>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 30.2 bits (68), Expect = 0.034
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 4   YSGADISIVVRDALMQPVR 22
           +SGAD++ +V +A +   R
Sbjct: 216 FSGADLANLVNEAALFAAR 234


>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
           H2A.Z [TaxId: 9606]}
          Length = 103

 Score = 24.8 bits (54), Expect = 1.5
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 73  LEPPVS-MHHILKSLETSKPTVNDDDMVKLRKFMEDFGQE 111
           L+ PV  +H  LKS  TS   V     V     +E    E
Sbjct: 10  LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAE 49


>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
           {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
          Length = 361

 Score = 24.3 bits (51), Expect = 4.6
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 80  HHILKSLETS-KPTVNDDDMVKLRKFMEDF 108
           H  +  L  S    V  +    L +FME F
Sbjct: 327 HRSVGGLRASIYNAVPYESCEALVQFMEHF 356


>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
           {Escherichia coli [TaxId: 562]}
          Length = 360

 Score = 23.9 bits (50), Expect = 6.2
 Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 80  HHILKSLETS-KPTVNDDDMVKLRKFMEDFGQE 111
           H ++  +  S    +  + +  L  FM +F + 
Sbjct: 326 HRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 358


>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 63

 Score = 22.3 bits (48), Expect = 7.4
 Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)

Query: 74  EPPVSMHHILKSLETSKPTVNDDDMVK 100
                   I + L+ S PTV+    V 
Sbjct: 21  GVTPLRARIAERLDQSGPTVS--QTVS 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 406,589
Number of extensions: 16525
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 11
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)