BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy381
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60
GG + EA ++G+ + IP+F DQ N V ++F+ + ++ +AL V
Sbjct: 92 THGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSSTDLLNALKRV 151
Query: 61 LEDPIFQ 67
+ DP ++
Sbjct: 152 INDPSYK 158
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
G+ S EA V ++ +P +Q +NA+RI ++ G + D + + + +A++ V
Sbjct: 328 HAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVA 387
Query: 62 EDP 64
DP
Sbjct: 388 SDP 390
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGVVLE 44
G SL E+ GV LIC P FGDQ LN + + + + GV +E
Sbjct: 352 GWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE 393
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG S A +GV + +P D + AQR + G+ L L D + +++ VL
Sbjct: 342 HGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL 401
Query: 62 EDP 64
+DP
Sbjct: 402 DDP 404
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDL-NAQRIAKIKTGVVLEFDNLNEDNIYDAL 57
G ++ EAF GV L+ +P F + +A+R+ ++ G VL D L +I +A+
Sbjct: 304 HGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAV 360
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK 36
G S+ E+ +GV ++ P++ +Q LNA R+ K
Sbjct: 359 GWNSILESMWFGVPILTWPIYAEQQLNAFRLVK 391
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK 36
G S+ E+ +GV ++ P++ +Q LNA R+ K
Sbjct: 359 GWNSILESMWFGVPILTWPIYAEQQLNAFRLVK 391
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLN---AQRIAKIKTGVVLEFDN--LNEDNIYDA 56
G S+ E GV +I P FGDQ LN + + +I GV DN L +++I A
Sbjct: 352 HSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV----DNGVLTKESIKKA 407
Query: 57 L 57
L
Sbjct: 408 L 408
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG + A G I +P DQ A R+A++ GV + D++ AL T L
Sbjct: 308 HGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATAL 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.146 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,989,601
Number of Sequences: 62578
Number of extensions: 64199
Number of successful extensions: 225
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 10
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)