Query psy381
Match_columns 70
No_of_seqs 147 out of 1033
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 18:00:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00201 UDPGT: UDP-glucoronos 99.9 1.7E-23 3.7E-28 133.8 7.2 69 1-69 347-415 (500)
2 PHA03392 egt ecdysteroid UDP-g 99.9 3.3E-22 7.1E-27 129.2 7.2 69 1-69 370-438 (507)
3 PLN02670 transferase, transfer 99.8 5.3E-21 1.2E-25 122.8 6.8 69 1-69 363-438 (472)
4 PLN03004 UDP-glycosyltransfera 99.8 9.2E-21 2E-25 121.2 7.1 69 1-69 358-430 (451)
5 PLN02554 UDP-glycosyltransfera 99.8 7.8E-21 1.7E-25 122.2 6.6 69 1-69 366-447 (481)
6 PLN02208 glycosyltransferase f 99.8 1.5E-20 3.3E-25 119.9 7.2 65 1-65 335-403 (442)
7 PLN02210 UDP-glucosyl transfer 99.8 2.6E-20 5.7E-25 119.2 6.5 69 1-69 348-424 (456)
8 PLN02562 UDP-glycosyltransfera 99.8 5E-20 1.1E-24 117.7 6.9 67 1-69 352-419 (448)
9 PLN02410 UDP-glucoronosyl/UDP- 99.8 8.2E-20 1.8E-24 116.8 7.2 63 1-64 348-411 (451)
10 COG1819 Glycosyl transferases, 99.8 8.6E-20 1.9E-24 115.5 7.0 69 1-69 306-374 (406)
11 PLN02207 UDP-glycosyltransfera 99.8 7.1E-20 1.5E-24 117.5 6.4 69 1-69 356-434 (468)
12 PLN02167 UDP-glycosyltransfera 99.8 7.8E-20 1.7E-24 117.4 5.7 69 1-69 364-441 (475)
13 PLN00414 glycosyltransferase f 99.8 2E-19 4.3E-24 115.0 7.3 64 1-64 336-403 (446)
14 PLN03007 UDP-glucosyltransfera 99.8 2.5E-19 5.4E-24 115.3 6.5 69 1-69 369-449 (482)
15 PLN02992 coniferyl-alcohol glu 99.8 4.6E-19 1E-23 114.1 7.5 64 1-64 362-428 (481)
16 PLN00164 glucosyltransferase; 99.8 2.4E-19 5.1E-24 115.4 6.1 65 1-65 363-433 (480)
17 PLN02448 UDP-glycosyltransfera 99.8 4.9E-19 1.1E-23 113.4 7.2 64 1-64 347-416 (459)
18 PLN02764 glycosyltransferase f 99.8 5.8E-19 1.3E-23 113.0 7.1 64 1-64 341-408 (453)
19 PLN02863 UDP-glucoronosyl/UDP- 99.8 5.2E-19 1.1E-23 113.8 6.9 69 1-69 367-440 (477)
20 PLN02173 UDP-glucosyl transfer 99.8 5.2E-19 1.1E-23 113.2 6.8 66 1-66 341-411 (449)
21 KOG1192|consensus 99.8 3E-19 6.4E-24 114.0 5.4 69 1-69 360-428 (496)
22 PLN02555 limonoid glucosyltran 99.8 9E-19 2E-23 112.8 7.0 64 1-64 361-430 (480)
23 cd03784 GT1_Gtf_like This fami 99.8 1.6E-18 3.4E-23 108.3 6.4 67 1-67 310-376 (401)
24 PLN02152 indole-3-acetate beta 99.8 1.3E-18 2.8E-23 111.5 5.8 69 1-69 351-425 (455)
25 TIGR01426 MGT glycosyltransfer 99.8 3.3E-18 7.2E-23 106.9 7.2 69 1-69 297-365 (392)
26 PLN03015 UDP-glucosyl transfer 99.7 7.3E-18 1.6E-22 108.4 7.0 62 1-62 359-425 (470)
27 PLN02534 UDP-glycosyltransfera 99.7 4.5E-17 9.8E-22 105.2 7.2 62 1-62 368-443 (491)
28 PF04101 Glyco_tran_28_C: Glyc 99.6 1.2E-16 2.5E-21 90.5 2.6 67 1-67 78-148 (167)
29 PRK12446 undecaprenyldiphospho 99.6 9.7E-15 2.1E-19 91.1 7.6 65 1-65 258-327 (352)
30 PF13528 Glyco_trans_1_3: Glyc 99.6 6.6E-15 1.4E-19 89.7 6.4 60 1-60 256-317 (318)
31 COG0707 MurG UDP-N-acetylgluco 99.6 2E-14 4.4E-19 90.1 7.3 65 1-65 258-326 (357)
32 TIGR00661 MJ1255 conserved hyp 99.5 5.1E-14 1.1E-18 86.6 5.9 64 1-67 253-318 (321)
33 PRK00726 murG undecaprenyldiph 99.4 1.9E-12 4.1E-17 80.1 7.8 69 1-69 258-330 (357)
34 TIGR01133 murG undecaprenyldip 99.2 1.2E-10 2.5E-15 71.5 7.3 68 2-69 257-327 (348)
35 cd03785 GT1_MurG MurG is an N- 99.2 1.8E-10 3.9E-15 70.7 7.5 68 2-69 259-330 (350)
36 COG4671 Predicted glycosyl tra 99.1 1.9E-10 4.1E-15 72.2 5.3 65 1-65 300-367 (400)
37 PRK13608 diacylglycerol glucos 99.1 7.4E-10 1.6E-14 69.9 7.1 63 2-68 280-343 (391)
38 PRK13609 diacylglycerol glucos 98.9 1.1E-08 2.3E-13 64.0 7.0 64 2-69 280-344 (380)
39 PLN02605 monogalactosyldiacylg 98.9 9.9E-09 2.1E-13 64.5 6.1 63 2-68 289-353 (382)
40 TIGR03492 conserved hypothetic 98.8 3.9E-08 8.4E-13 62.6 6.5 63 2-68 303-369 (396)
41 TIGR00215 lpxB lipid-A-disacch 98.6 4E-08 8.6E-13 62.2 3.3 67 2-69 274-357 (385)
42 COG1519 KdtA 3-deoxy-D-manno-o 98.6 2.5E-07 5.5E-12 59.2 6.0 63 2-69 330-392 (419)
43 PRK05749 3-deoxy-D-manno-octul 98.5 7.3E-07 1.6E-11 56.6 6.3 62 4-69 333-394 (425)
44 PRK00025 lpxB lipid-A-disaccha 98.4 2.9E-07 6.4E-12 57.4 2.9 67 2-69 268-347 (380)
45 TIGR03590 PseG pseudaminic aci 98.3 5.4E-07 1.2E-11 55.0 2.8 33 1-34 247-279 (279)
46 COG3980 spsG Spore coat polysa 98.3 3.9E-06 8.4E-11 51.8 5.8 67 3-70 234-300 (318)
47 KOG3349|consensus 98.2 1.7E-06 3.8E-11 49.0 3.3 43 1-43 86-132 (170)
48 cd03814 GT1_like_2 This family 98.0 2E-05 4.3E-10 47.8 5.2 59 5-69 280-338 (364)
49 cd05844 GT1_like_7 Glycosyltra 98.0 2E-05 4.4E-10 48.4 5.1 58 5-68 284-341 (367)
50 cd03820 GT1_amsD_like This fam 97.9 5.3E-05 1.2E-09 45.2 6.0 59 5-69 266-325 (348)
51 PF00534 Glycos_transf_1: Glyc 97.9 4.1E-05 8.8E-10 42.9 4.5 61 3-69 104-164 (172)
52 cd03795 GT1_like_4 This family 97.8 8.7E-05 1.9E-09 45.2 6.0 59 5-69 279-338 (357)
53 cd03801 GT1_YqgM_like This fam 97.8 6.6E-05 1.4E-09 44.9 4.8 60 3-68 287-346 (374)
54 cd03794 GT1_wbuB_like This fam 97.8 0.0001 2.2E-09 44.7 5.3 58 5-68 313-370 (394)
55 cd03823 GT1_ExpE7_like This fa 97.7 0.00014 3.1E-09 43.9 6.0 59 4-68 276-334 (359)
56 TIGR00236 wecB UDP-N-acetylglu 97.7 0.00017 3.7E-09 45.0 6.3 56 7-69 285-340 (365)
57 cd03808 GT1_cap1E_like This fa 97.7 0.00015 3.4E-09 43.4 5.6 58 5-68 277-334 (359)
58 cd04946 GT1_AmsK_like This fam 97.7 0.00016 3.5E-09 46.1 5.8 60 5-69 324-383 (407)
59 cd03800 GT1_Sucrose_synthase T 97.7 0.00017 3.7E-09 44.7 5.5 58 5-68 316-373 (398)
60 PF13524 Glyco_trans_1_2: Glyc 97.6 0.0004 8.7E-09 35.5 5.4 57 4-69 11-68 (92)
61 cd03822 GT1_ecORF704_like This 97.6 0.00018 3.8E-09 43.7 4.6 57 5-68 283-339 (366)
62 TIGR03088 stp2 sugar transfera 97.6 0.00026 5.6E-09 44.0 5.4 57 5-67 286-342 (374)
63 cd03812 GT1_CapH_like This fam 97.6 0.00035 7.6E-09 42.7 5.9 58 5-69 280-337 (358)
64 COG5017 Uncharacterized conser 97.6 0.00025 5.4E-09 39.9 4.7 45 1-45 71-123 (161)
65 TIGR02149 glgA_Coryne glycogen 97.5 0.00035 7.6E-09 43.5 5.7 60 5-68 294-357 (388)
66 cd03807 GT1_WbnK_like This fam 97.5 0.00031 6.7E-09 42.3 5.2 56 4-67 281-336 (365)
67 PRK15427 colanic acid biosynth 97.5 0.00035 7.5E-09 44.7 5.6 58 5-68 318-376 (406)
68 PRK14089 ipid-A-disaccharide s 97.5 0.00012 2.6E-09 46.3 3.5 57 2-59 242-315 (347)
69 cd04949 GT1_gtfA_like This fam 97.5 0.00032 7E-09 43.5 5.2 59 5-68 292-350 (372)
70 cd04962 GT1_like_5 This family 97.5 0.00037 8.1E-09 42.9 5.1 58 5-68 284-341 (371)
71 cd03817 GT1_UGDG_like This fam 97.5 0.00032 6.9E-09 42.4 4.6 57 4-67 291-347 (374)
72 cd03818 GT1_ExpC_like This fam 97.5 0.00031 6.7E-09 44.3 4.6 58 6-69 315-372 (396)
73 cd03799 GT1_amsK_like This is 97.4 0.00058 1.3E-08 41.6 5.6 58 4-67 274-331 (355)
74 TIGR02472 sucr_P_syn_N sucrose 97.4 0.00055 1.2E-08 44.0 5.6 58 5-68 354-411 (439)
75 PLN02871 UDP-sulfoquinovose:DA 97.4 0.00053 1.1E-08 44.3 5.5 59 5-69 345-406 (465)
76 TIGR03087 stp1 sugar transfera 97.4 0.00039 8.5E-09 43.9 4.7 56 5-68 312-367 (397)
77 cd03816 GT1_ALG1_like This fam 97.4 0.00055 1.2E-08 43.8 5.4 56 5-68 331-389 (415)
78 cd03786 GT1_UDP-GlcNAc_2-Epime 97.4 0.0005 1.1E-08 42.6 5.0 57 6-69 287-343 (363)
79 TIGR03449 mycothiol_MshA UDP-N 97.4 0.00064 1.4E-08 42.7 5.3 58 5-68 316-373 (405)
80 PF13844 Glyco_transf_41: Glyc 97.4 0.00037 8.1E-09 45.7 4.2 64 2-68 371-435 (468)
81 cd03798 GT1_wlbH_like This fam 97.3 0.0012 2.6E-08 39.7 6.1 56 4-65 291-346 (377)
82 cd03821 GT1_Bme6_like This fam 97.3 0.0011 2.3E-08 40.1 5.6 56 5-68 295-350 (375)
83 PRK10307 putative glycosyl tra 97.3 0.0017 3.6E-08 41.2 6.5 57 6-68 322-378 (412)
84 cd03813 GT1_like_3 This family 97.2 0.0016 3.4E-08 42.4 6.1 59 5-69 384-448 (475)
85 cd03825 GT1_wcfI_like This fam 97.2 0.00077 1.7E-08 41.2 4.1 57 5-67 278-334 (365)
86 PRK15484 lipopolysaccharide 1, 97.2 0.0019 4E-08 40.9 5.9 56 6-66 292-347 (380)
87 cd03811 GT1_WabH_like This fam 97.2 0.0013 2.9E-08 39.2 5.0 58 5-68 277-337 (353)
88 PRK09922 UDP-D-galactose:(gluc 97.1 0.0021 4.5E-08 40.1 5.5 56 5-66 271-327 (359)
89 cd03805 GT1_ALG2_like This fam 97.0 0.0024 5.3E-08 39.8 5.2 56 6-68 314-369 (392)
90 TIGR02468 sucrsPsyn_pln sucros 97.0 0.0032 6.9E-08 44.9 5.8 58 6-69 586-643 (1050)
91 cd03804 GT1_wbaZ_like This fam 96.9 0.0011 2.5E-08 40.8 3.3 53 6-64 275-327 (351)
92 cd04951 GT1_WbdM_like This fam 96.9 0.00083 1.8E-08 41.0 2.6 55 5-67 276-331 (360)
93 cd03792 GT1_Trehalose_phosphor 96.9 0.0025 5.3E-08 39.8 4.7 56 5-68 287-342 (372)
94 PF13692 Glyco_trans_1_4: Glyc 96.9 0.00089 1.9E-08 36.0 2.2 51 5-63 85-135 (135)
95 cd03819 GT1_WavL_like This fam 96.9 0.0055 1.2E-07 37.4 5.9 58 5-68 278-336 (355)
96 PLN02275 transferase, transfer 96.7 0.006 1.3E-07 38.5 5.5 49 5-61 323-371 (371)
97 cd03809 GT1_mtfB_like This fam 96.7 0.00071 1.5E-08 41.1 1.1 57 5-69 286-342 (365)
98 PRK09814 beta-1,6-galactofuran 96.4 0.014 2.9E-07 36.4 5.6 47 6-60 251-297 (333)
99 PLN00142 sucrose synthase 96.2 0.025 5.5E-07 39.7 6.1 58 6-69 681-742 (815)
100 TIGR02470 sucr_synth sucrose s 96.2 0.025 5.3E-07 39.6 6.0 57 6-68 658-718 (784)
101 PRK15179 Vi polysaccharide bio 96.0 0.035 7.6E-07 38.3 6.1 54 5-62 605-658 (694)
102 PRK10017 colanic acid biosynth 95.9 0.043 9.3E-07 35.8 6.1 59 7-68 338-398 (426)
103 cd03796 GT1_PIG-A_like This fa 95.9 0.024 5.3E-07 35.9 4.8 51 6-64 284-334 (398)
104 cd03802 GT1_AviGT4_like This f 95.7 0.042 9.1E-07 33.3 5.2 51 5-63 258-308 (335)
105 TIGR02918 accessory Sec system 95.7 0.064 1.4E-06 35.6 6.1 57 5-64 406-468 (500)
106 cd04955 GT1_like_6 This family 95.6 0.014 3.1E-07 35.6 3.0 53 5-67 282-334 (363)
107 TIGR03713 acc_sec_asp1 accesso 95.6 0.011 2.3E-07 39.4 2.4 52 3-65 439-490 (519)
108 PHA01630 putative group 1 glyc 95.2 0.072 1.6E-06 33.5 5.1 56 5-63 223-294 (331)
109 TIGR02095 glgA glycogen/starch 95.2 0.039 8.5E-07 35.8 4.0 56 6-67 380-445 (473)
110 PLN02501 digalactosyldiacylgly 95.1 0.048 1E-06 38.1 4.2 52 5-65 632-683 (794)
111 cd04950 GT1_like_1 Glycosyltra 95.1 0.089 1.9E-06 33.2 5.2 48 6-63 293-340 (373)
112 KOG4626|consensus 95.1 0.017 3.8E-07 39.8 2.1 42 3-44 846-888 (966)
113 PLN02846 digalactosyldiacylgly 95.0 0.057 1.2E-06 35.7 4.4 51 5-64 314-364 (462)
114 cd03806 GT1_ALG11_like This fa 95.0 0.047 1E-06 35.2 3.9 53 6-65 339-394 (419)
115 PF04007 DUF354: Protein of un 94.6 0.25 5.5E-06 31.4 6.3 55 3-62 255-309 (335)
116 PRK10125 putative glycosyl tra 94.5 0.086 1.9E-06 33.9 4.1 46 5-57 320-365 (405)
117 PLN02949 transferase, transfer 94.0 0.052 1.1E-06 35.7 2.5 54 6-67 369-427 (463)
118 PRK00654 glgA glycogen synthas 93.8 0.068 1.5E-06 34.8 2.7 55 6-62 371-427 (466)
119 PRK01021 lpxB lipid-A-disaccha 93.7 0.29 6.2E-06 33.6 5.5 63 6-69 498-577 (608)
120 COG0381 WecB UDP-N-acetylgluco 93.7 0.14 3.1E-06 33.2 3.9 55 8-69 293-347 (383)
121 cd03791 GT1_Glycogen_synthase_ 93.7 0.052 1.1E-06 35.1 2.0 55 6-62 385-441 (476)
122 PRK14099 glycogen synthase; Pr 93.3 0.15 3.2E-06 33.7 3.6 61 6-68 384-452 (485)
123 PF02684 LpxB: Lipid-A-disacch 93.2 0.45 9.8E-06 30.8 5.6 62 6-67 270-344 (373)
124 KOG0853|consensus 93.1 0.047 1E-06 36.4 1.1 59 7-69 381-439 (495)
125 PHA01633 putative glycosyl tra 93.0 0.32 7E-06 30.9 4.7 55 5-61 237-305 (335)
126 COG3914 Spy Predicted O-linked 93.0 0.32 6.9E-06 33.3 4.8 40 2-43 518-560 (620)
127 PRK14098 glycogen synthase; Pr 92.1 0.21 4.5E-06 33.1 3.1 52 6-61 396-449 (489)
128 COG0438 RfaG Glycosyltransfera 91.8 1.2 2.6E-05 26.1 5.9 54 6-65 291-344 (381)
129 TIGR02400 trehalose_OtsA alpha 90.7 0.75 1.6E-05 30.4 4.6 50 6-64 370-423 (456)
130 PF02350 Epimerase_2: UDP-N-ac 90.6 0.5 1.1E-05 30.0 3.6 52 7-65 268-320 (346)
131 COG4370 Uncharacterized protei 90.3 1.2 2.5E-05 28.8 5.0 57 10-68 325-384 (412)
132 PRK15490 Vi polysaccharide bio 89.7 1.3 2.8E-05 30.4 5.1 38 5-46 486-523 (578)
133 TIGR02919 accessory Sec system 89.5 0.88 1.9E-05 30.0 4.2 53 5-65 361-413 (438)
134 cd03793 GT1_Glycogen_synthase_ 88.9 1.8 3.8E-05 29.9 5.4 57 6-63 489-552 (590)
135 cd03788 GT1_TPS Trehalose-6-Ph 87.3 0.7 1.5E-05 30.4 2.7 50 6-64 375-428 (460)
136 cd01635 Glycosyltransferase_GT 87.3 0.68 1.5E-05 26.1 2.4 21 5-25 195-215 (229)
137 PLN02939 transferase, transfer 86.9 1.6 3.5E-05 31.7 4.4 55 6-62 871-930 (977)
138 TIGR03568 NeuC_NnaA UDP-N-acet 86.2 1.1 2.4E-05 28.5 3.2 47 6-62 291-338 (365)
139 PLN03063 alpha,alpha-trehalose 84.3 3 6.5E-05 29.6 4.7 54 6-67 390-448 (797)
140 TIGR00421 ubiX_pad polyprenyl 84.0 6.4 0.00014 22.9 5.9 35 10-44 107-145 (181)
141 PF07429 Glyco_transf_56: 4-al 83.7 7.7 0.00017 25.3 6.0 55 4-62 278-332 (360)
142 COG2327 WcaK Polysaccharide py 79.8 15 0.00032 24.3 6.3 55 6-63 295-350 (385)
143 PF06258 Mito_fiss_Elm1: Mitoc 79.4 4.7 0.0001 25.5 4.0 41 5-45 239-282 (311)
144 PF07862 Nif11: Nitrogen fixat 78.6 3 6.4E-05 18.9 2.2 22 49-70 2-23 (49)
145 COG1817 Uncharacterized protei 75.9 13 0.00027 24.1 5.1 56 3-64 259-315 (346)
146 PRK04885 ppnK inorganic polyph 75.3 12 0.00025 23.3 4.8 22 2-23 42-69 (265)
147 COG2022 ThiG Uncharacterized e 73.6 13 0.00028 23.1 4.6 46 15-60 128-181 (262)
148 PRK05579 bifunctional phosphop 73.5 17 0.00037 23.9 5.4 52 11-62 112-182 (399)
149 PRK11475 DNA-binding transcrip 72.4 17 0.00038 21.4 6.2 52 13-65 66-117 (207)
150 PF09547 Spore_IV_A: Stage IV 72.4 22 0.00049 24.1 5.7 58 6-63 171-235 (492)
151 PF05690 ThiG: Thiazole biosyn 71.7 14 0.0003 22.9 4.4 46 15-60 121-174 (247)
152 PF04558 tRNA_synt_1c_R1: Glut 71.6 5.8 0.00012 22.9 2.7 28 30-62 104-131 (164)
153 PRK03372 ppnK inorganic polyph 71.6 19 0.00041 22.9 5.1 45 3-63 80-128 (306)
154 PLN02496 probable phosphopanto 71.4 20 0.00043 21.6 6.1 56 8-63 125-199 (209)
155 PF11071 DUF2872: Protein of u 71.0 9.1 0.0002 21.6 3.2 13 49-61 128-140 (141)
156 PRK05920 aromatic acid decarbo 70.8 12 0.00026 22.3 4.0 34 10-43 125-162 (204)
157 PRK07313 phosphopantothenoylcy 70.3 19 0.00041 21.0 6.2 48 15-62 113-179 (182)
158 PRK02649 ppnK inorganic polyph 70.0 16 0.00034 23.2 4.6 45 3-63 76-124 (305)
159 PLN02316 synthase/transferase 69.7 19 0.00042 26.7 5.4 56 6-63 934-998 (1036)
160 PRK03708 ppnK inorganic polyph 69.4 12 0.00027 23.2 3.9 21 3-23 65-88 (277)
161 TIGR00725 conserved hypothetic 69.0 5.7 0.00012 22.6 2.3 21 3-23 100-123 (159)
162 COG0763 LpxB Lipid A disacchar 68.5 17 0.00037 23.9 4.5 58 7-64 275-345 (381)
163 TIGR02699 archaeo_AfpA archaeo 67.0 20 0.00044 20.9 4.3 19 6-24 106-124 (174)
164 PF09989 DUF2229: CoA enzyme a 66.9 21 0.00045 21.5 4.5 44 19-63 2-49 (221)
165 PF14350 Beta_protein: Beta pr 66.5 10 0.00022 24.1 3.2 46 17-62 99-147 (347)
166 PRK01911 ppnK inorganic polyph 66.4 19 0.00041 22.6 4.4 17 47-63 104-120 (292)
167 TIGR00732 dprA DNA protecting 66.1 26 0.00057 21.0 5.2 47 4-55 170-218 (220)
168 PF04464 Glyphos_transf: CDP-G 65.9 2.3 5E-05 26.8 0.3 55 6-64 279-337 (369)
169 TIGR02113 coaC_strep phosphopa 64.7 26 0.00055 20.4 6.0 52 8-59 105-175 (177)
170 PF01372 Melittin: Melittin; 64.5 1.4 2.9E-05 17.6 -0.6 17 4-20 1-17 (26)
171 PRK03501 ppnK inorganic polyph 64.4 29 0.00063 21.6 4.8 46 3-63 47-97 (264)
172 PRK02797 4-alpha-L-fucosyltran 62.9 39 0.00084 21.8 6.3 53 4-60 239-291 (322)
173 PRK14077 pnk inorganic polypho 62.8 28 0.0006 21.9 4.6 17 47-63 104-120 (287)
174 PF12689 Acid_PPase: Acid Phos 61.5 15 0.00032 21.3 3.1 47 14-60 120-166 (169)
175 PF13767 DUF4168: Domain of un 61.5 12 0.00026 18.6 2.4 28 43-70 51-78 (78)
176 TIGR03646 YtoQ_fam YtoQ family 61.1 12 0.00027 21.1 2.6 13 49-61 131-143 (144)
177 TIGR02814 pfaD_fam PfaD family 61.1 48 0.001 22.3 6.2 58 3-61 6-66 (444)
178 PRK03378 ppnK inorganic polyph 60.7 27 0.00059 21.9 4.3 16 48-63 104-119 (292)
179 CHL00162 thiG thiamin biosynth 60.7 13 0.00029 23.2 2.9 31 15-45 135-165 (267)
180 PRK04539 ppnK inorganic polyph 60.4 26 0.00057 22.1 4.2 45 3-63 76-124 (296)
181 PHA02819 hypothetical protein; 60.1 5.8 0.00013 19.8 1.0 29 40-68 10-38 (71)
182 PRK01185 ppnK inorganic polyph 59.6 33 0.00072 21.4 4.5 45 3-63 60-105 (271)
183 PRK02231 ppnK inorganic polyph 59.3 28 0.00061 21.7 4.2 44 3-62 50-97 (272)
184 PRK01231 ppnK inorganic polyph 59.1 35 0.00076 21.5 4.6 45 3-63 70-118 (295)
185 TIGR02478 6PF1K_euk 6-phosphof 58.0 68 0.0015 23.1 7.2 22 2-23 196-217 (745)
186 PRK10100 DNA-binding transcrip 57.7 38 0.00083 20.1 5.7 51 14-66 80-130 (216)
187 PRK02155 ppnK NAD(+)/NADH kina 57.4 41 0.00089 21.1 4.7 46 2-63 70-119 (291)
188 PF02481 DNA_processg_A: DNA r 57.2 32 0.0007 20.5 4.1 40 3-43 169-210 (212)
189 PRK14075 pnk inorganic polypho 57.1 41 0.00088 20.7 4.6 45 3-63 49-94 (256)
190 COG1560 HtrB Lauroyl/myristoyl 55.9 51 0.0011 21.0 6.1 37 4-40 111-148 (308)
191 PF05159 Capsule_synth: Capsul 55.4 11 0.00024 22.9 1.9 16 6-21 209-224 (269)
192 PRK08305 spoVFB dipicolinate s 51.3 51 0.0011 19.6 5.1 53 13-65 119-186 (196)
193 PF07631 PSD4: Protein of unkn 49.5 16 0.00036 20.1 1.9 21 49-69 34-54 (128)
194 PF06506 PrpR_N: Propionate ca 49.5 9.6 0.00021 21.8 1.0 21 2-23 41-61 (176)
195 PF09884 DUF2111: Uncharacteri 48.9 8.4 0.00018 19.9 0.6 16 10-25 53-68 (84)
196 PF15024 Glyco_transf_18: Glyc 47.7 42 0.00092 23.3 3.9 58 7-64 356-431 (559)
197 PF03401 TctC: Tripartite tric 47.1 17 0.00036 22.4 1.8 19 51-69 220-238 (274)
198 cd04742 NPD_FabD 2-Nitropropan 46.9 87 0.0019 21.0 6.1 57 4-61 2-61 (418)
199 PRK14076 pnk inorganic polypho 46.2 64 0.0014 22.3 4.6 45 3-63 356-404 (569)
200 PLN02935 Bifunctional NADH kin 45.7 71 0.0015 22.0 4.6 17 47-63 302-318 (508)
201 TIGR00730 conserved hypothetic 44.6 22 0.00047 20.7 2.0 38 2-39 104-153 (178)
202 TIGR00521 coaBC_dfp phosphopan 44.0 92 0.002 20.5 5.8 50 13-62 110-178 (390)
203 PF05693 Glycogen_syn: Glycoge 43.7 40 0.00086 23.8 3.3 54 7-61 485-541 (633)
204 PF00365 PFK: Phosphofructokin 43.3 34 0.00074 21.4 2.8 23 2-24 172-194 (282)
205 COG1618 Predicted nucleotide k 43.0 71 0.0015 18.9 5.1 54 8-63 123-177 (179)
206 PF07128 DUF1380: Protein of u 42.4 15 0.00032 20.9 1.0 58 5-62 70-138 (139)
207 PHA03162 hypothetical protein; 41.9 28 0.00062 19.6 2.0 26 44-69 9-35 (135)
208 cd00764 Eukaryotic_PFK Phospho 41.7 1.4E+02 0.003 21.8 7.2 22 2-23 199-220 (762)
209 PTZ00056 glutathione peroxidas 41.4 54 0.0012 19.2 3.3 23 46-68 163-185 (199)
210 PF03641 Lysine_decarbox: Poss 40.6 35 0.00075 18.7 2.3 37 2-38 61-110 (133)
211 COG3199 Predicted inorganic po 39.9 76 0.0016 20.9 3.9 21 3-23 108-131 (355)
212 PRK10116 universal stress prot 39.4 22 0.00048 18.9 1.4 13 14-26 130-142 (142)
213 PHA03155 hypothetical protein; 39.0 35 0.00076 18.7 2.1 24 46-69 6-30 (115)
214 PF07319 DnaI_N: Primosomal pr 38.9 30 0.00064 17.9 1.8 19 51-69 19-37 (94)
215 cd07037 TPP_PYR_MenD Pyrimidin 38.4 36 0.00078 19.4 2.2 18 5-22 76-93 (162)
216 COG0297 GlgA Glycogen synthase 38.3 95 0.002 21.2 4.4 54 3-61 381-440 (487)
217 PRK13982 bifunctional SbtC-lik 38.2 69 0.0015 21.8 3.7 52 11-62 176-247 (475)
218 PRK06029 3-octaprenyl-4-hydrox 38.1 86 0.0019 18.4 6.2 35 10-44 110-148 (185)
219 cd07035 TPP_PYR_POX_like Pyrim 37.9 71 0.0015 17.5 6.4 19 5-23 75-93 (155)
220 KOG3446|consensus 37.9 53 0.0012 17.2 2.5 46 15-62 49-95 (97)
221 PF05225 HTH_psq: helix-turn-h 37.6 43 0.00093 14.9 2.3 15 49-63 1-15 (45)
222 PF02441 Flavoprotein: Flavopr 37.5 43 0.00094 18.0 2.4 20 7-26 102-121 (129)
223 PRK13840 sucrose phosphorylase 37.3 58 0.0013 22.3 3.3 45 14-58 371-415 (495)
224 PF04312 DUF460: Protein of un 37.3 81 0.0017 17.9 5.9 52 10-61 71-123 (138)
225 COG3660 Predicted nucleoside-d 37.1 1.2E+02 0.0025 19.6 5.6 57 5-61 255-326 (329)
226 PLN02859 glutamine-tRNA ligase 36.5 59 0.0013 23.7 3.3 25 34-63 110-134 (788)
227 PRK14071 6-phosphofructokinase 36.2 1.1E+02 0.0025 19.9 4.4 22 2-23 187-208 (360)
228 PRK05788 cobalamin biosynthesi 36.1 1.2E+02 0.0025 19.4 5.2 23 1-23 98-123 (315)
229 PF00282 Pyridoxal_deC: Pyrido 35.2 1.3E+02 0.0027 19.6 5.9 48 15-63 140-191 (373)
230 KOG3285|consensus 34.4 1.1E+02 0.0023 18.4 4.1 56 2-61 13-68 (203)
231 cd01451 vWA_Magnesium_chelatas 34.1 91 0.002 17.6 5.5 46 13-58 130-177 (178)
232 COG3245 CycB Cytochrome c5 [En 33.9 54 0.0012 18.2 2.3 49 12-61 60-122 (126)
233 COG3195 Uncharacterized protei 33.2 1.1E+02 0.0023 18.1 4.8 38 28-65 111-148 (176)
234 PF10649 DUF2478: Protein of u 33.2 39 0.00084 19.5 1.8 16 6-21 114-129 (159)
235 COG0205 PfkA 6-phosphofructoki 33.2 49 0.0011 21.6 2.4 22 2-23 174-195 (347)
236 PF01121 CoaE: Dephospho-CoA k 33.1 1E+02 0.0022 17.9 4.8 63 3-68 11-80 (180)
237 PF14943 MRP-S26: Mitochondria 33.0 47 0.001 19.4 2.1 19 46-64 138-156 (170)
238 PRK06270 homoserine dehydrogen 32.7 96 0.0021 19.8 3.6 37 7-43 110-149 (341)
239 PF03923 Lipoprotein_16: Uncha 32.7 49 0.0011 18.7 2.1 19 52-70 140-158 (159)
240 PRK10736 hypothetical protein; 32.6 1.5E+02 0.0032 19.6 5.8 48 5-57 234-283 (374)
241 PRK14501 putative bifunctional 32.6 14 0.00031 25.9 -0.1 51 6-64 376-429 (726)
242 TIGR01101 V_ATP_synt_F vacuola 32.4 83 0.0018 17.2 2.9 7 37-43 59-65 (115)
243 PHA02975 hypothetical protein; 32.3 36 0.00077 16.9 1.3 25 40-64 10-34 (69)
244 PF00072 Response_reg: Respons 32.1 72 0.0016 15.8 5.7 43 14-58 70-112 (112)
245 COG2230 Cfa Cyclopropane fatty 31.7 30 0.00065 21.9 1.2 38 3-40 81-121 (283)
246 PRK08811 uroporphyrinogen-III 31.6 1.3E+02 0.0028 18.5 4.3 46 14-64 218-263 (266)
247 TIGR03845 sulfopyru_alph sulfo 31.6 49 0.0011 18.7 2.0 17 6-22 74-91 (157)
248 PLN02727 NAD kinase 31.6 1.6E+02 0.0035 22.2 4.8 45 3-63 751-799 (986)
249 PRK13695 putative NTPase; Prov 31.4 1E+02 0.0022 17.3 5.5 53 8-60 119-171 (174)
250 TIGR03852 sucrose_gtfA sucrose 31.4 78 0.0017 21.5 3.1 46 14-59 361-406 (470)
251 COG0826 Collagenase and relate 31.3 1.1E+02 0.0024 19.9 3.7 45 16-60 114-159 (347)
252 COG4231 Indolepyruvate ferredo 30.7 1.6E+02 0.0034 21.1 4.5 62 2-63 459-543 (640)
253 PF05591 DUF770: Protein of un 30.5 54 0.0012 18.9 2.0 18 51-68 132-149 (157)
254 PRK10840 transcriptional regul 30.3 1.1E+02 0.0025 17.5 5.4 49 14-64 79-127 (216)
255 PF06345 Drf_DAD: DRF Autoregu 29.9 36 0.00078 11.6 1.4 12 5-16 3-14 (15)
256 PLN02929 NADH kinase 29.7 1.4E+02 0.0029 19.2 3.9 57 2-63 71-137 (301)
257 PF05014 Nuc_deoxyrib_tr: Nucl 29.5 76 0.0016 16.6 2.5 21 3-23 74-97 (113)
258 PLN02884 6-phosphofructokinase 29.5 54 0.0012 21.8 2.2 22 2-23 229-251 (411)
259 PRK03957 V-type ATP synthase s 29.4 54 0.0012 17.2 1.8 18 49-66 28-45 (100)
260 cd07038 TPP_PYR_PDC_IPDC_like 29.4 60 0.0013 18.3 2.2 17 6-22 76-92 (162)
261 PF04230 PS_pyruv_trans: Polys 29.3 41 0.00089 19.5 1.5 17 7-23 268-284 (286)
262 PF12575 DUF3753: Protein of u 29.2 40 0.00087 16.9 1.2 27 39-65 9-35 (72)
263 TIGR02482 PFKA_ATP 6-phosphofr 28.9 61 0.0013 20.6 2.3 22 2-23 171-192 (301)
264 TIGR03358 VI_chp_5 type VI sec 28.5 52 0.0011 19.1 1.8 19 50-68 132-150 (159)
265 COG4273 Uncharacterized conser 28.3 1.2E+02 0.0026 17.1 5.2 56 2-60 54-123 (135)
266 PHA02698 hypothetical protein; 28.2 54 0.0012 16.7 1.6 23 46-68 39-61 (89)
267 KOG3729|consensus 28.0 51 0.0011 23.2 1.9 20 8-27 150-169 (715)
268 PF03016 Exostosin: Exostosin 27.8 46 0.00099 20.2 1.6 16 6-21 251-267 (302)
269 PF07583 PSCyt2: Protein of un 27.8 75 0.0016 19.1 2.4 23 47-69 51-73 (208)
270 COG3516 Predicted component of 27.7 56 0.0012 19.2 1.8 18 51-68 138-155 (169)
271 COG3181 Uncharacterized protei 27.7 57 0.0012 21.0 2.0 19 51-69 263-281 (319)
272 PF01975 SurE: Survival protei 27.2 75 0.0016 18.8 2.3 19 6-24 116-134 (196)
273 PHA02650 hypothetical protein; 27.0 48 0.001 17.0 1.3 25 40-64 10-34 (81)
274 COG0107 HisF Imidazoleglycerol 26.8 95 0.0021 19.4 2.7 19 25-43 155-173 (256)
275 TIGR02483 PFK_mixed phosphofru 26.8 1.8E+02 0.0039 18.7 4.2 22 2-23 173-194 (324)
276 PF11238 DUF3039: Protein of u 26.6 62 0.0014 15.6 1.6 16 6-21 15-30 (58)
277 COG4641 Uncharacterized protei 26.6 1.2E+02 0.0025 20.2 3.2 56 5-68 277-332 (373)
278 PF00763 THF_DHG_CYH: Tetrahyd 26.2 1.2E+02 0.0025 16.3 3.5 34 32-65 52-87 (117)
279 PRK06843 inosine 5-monophospha 26.0 2.1E+02 0.0045 19.2 5.5 53 8-62 35-89 (404)
280 COG0496 SurE Predicted acid ph 25.9 1.4E+02 0.003 18.7 3.4 20 5-24 107-126 (252)
281 TIGR02836 spore_IV_A stage IV 25.3 2.4E+02 0.0051 19.5 5.8 57 7-63 172-235 (492)
282 PF12958 DUF3847: Protein of u 25.1 1.1E+02 0.0025 15.8 3.1 40 30-69 42-84 (86)
283 cd00763 Bacterial_PFK Phosphof 25.1 1.9E+02 0.0042 18.5 7.4 60 2-61 171-237 (317)
284 TIGR01501 MthylAspMutase methy 25.0 1.4E+02 0.003 16.7 4.6 35 27-62 99-133 (134)
285 TIGR02452 conserved hypothetic 24.8 67 0.0015 20.1 1.9 19 49-67 222-241 (266)
286 cd08606 GDPD_YPL110cp_fungi Gl 24.8 1.8E+02 0.0038 17.9 5.3 25 15-39 245-269 (286)
287 PF08766 DEK_C: DEK C terminal 24.7 86 0.0019 14.3 2.4 15 50-64 2-16 (54)
288 TIGR03151 enACPred_II putative 24.7 1.9E+02 0.0042 18.3 5.6 54 7-61 3-58 (307)
289 PRK13932 stationary phase surv 24.6 82 0.0018 19.6 2.2 19 5-23 115-133 (257)
290 PF06718 DUF1203: Protein of u 24.4 55 0.0012 17.9 1.3 26 41-66 73-98 (117)
291 PRK00346 surE 5'(3')-nucleotid 24.3 84 0.0018 19.5 2.2 19 5-23 106-124 (250)
292 PF02776 TPP_enzyme_N: Thiamin 23.8 96 0.0021 17.4 2.3 19 5-23 80-98 (172)
293 PRK02228 V-type ATP synthase s 23.8 1.2E+02 0.0027 15.8 4.1 54 6-61 10-66 (100)
294 PRK13934 stationary phase surv 23.6 83 0.0018 19.7 2.1 19 5-23 109-127 (266)
295 PF10083 DUF2321: Uncharacteri 23.5 48 0.001 19.2 1.0 38 22-63 79-116 (158)
296 PRK14072 6-phosphofructokinase 23.4 2E+02 0.0044 19.2 4.0 23 2-24 191-218 (416)
297 PHA02844 putative transmembran 23.4 67 0.0015 16.3 1.4 25 40-64 10-34 (75)
298 TIGR02852 spore_dpaB dipicolin 23.4 1.7E+02 0.0037 17.3 4.9 54 13-66 114-182 (187)
299 PF01990 ATP-synt_F: ATP synth 23.3 48 0.001 16.9 0.9 27 37-65 16-42 (95)
300 cd08770 DAP_dppA_3 Peptidase M 23.1 2E+02 0.0044 18.0 4.2 18 11-30 143-160 (263)
301 TIGR00519 asnASE_I L-asparagin 23.1 2.2E+02 0.0047 18.3 6.1 54 6-62 255-314 (336)
302 TIGR00087 surE 5'/3'-nucleotid 22.9 96 0.0021 19.1 2.3 19 5-23 110-128 (244)
303 PRK13931 stationary phase surv 22.8 91 0.002 19.4 2.2 19 5-23 111-129 (261)
304 PF12244 DUF3606: Protein of u 22.8 1E+02 0.0022 14.4 2.1 16 48-63 32-47 (57)
305 COG0061 nadF NAD kinase [Coenz 22.5 2.1E+02 0.0045 17.9 4.0 18 48-66 96-113 (281)
306 PRK11761 cysM cysteine synthas 21.9 2.1E+02 0.0046 17.8 7.4 52 8-60 79-131 (296)
307 PRK02645 ppnK inorganic polyph 21.7 99 0.0021 19.5 2.2 22 2-23 64-89 (305)
308 PLN02564 6-phosphofructokinase 21.7 94 0.002 21.3 2.2 43 2-44 262-313 (484)
309 COG1212 KdsB CMP-2-keto-3-deox 21.6 1.7E+02 0.0036 18.3 3.1 36 25-60 50-87 (247)
310 KOG2986|consensus 21.6 38 0.00083 21.6 0.4 56 5-60 124-182 (313)
311 smart00079 PBPe Eukaryotic hom 21.5 1.4E+02 0.003 15.5 2.8 30 38-67 96-125 (134)
312 PF15007 CEP44: Centrosomal sp 21.4 72 0.0016 17.9 1.4 50 10-63 25-79 (131)
313 PF06602 Myotub-related: Myotu 21.3 2.3E+02 0.0049 18.4 3.8 38 31-68 224-262 (353)
314 PF13684 Dak1_2: Dihydroxyacet 21.3 2.3E+02 0.005 18.1 3.8 31 31-61 109-142 (313)
315 COG4048 Uncharacterized protei 21.2 56 0.0012 17.9 0.9 15 11-25 72-86 (123)
316 KOG0780|consensus 21.2 1.1E+02 0.0023 20.9 2.3 16 8-23 260-275 (483)
317 PF06738 DUF1212: Protein of u 21.1 47 0.001 19.1 0.7 40 28-67 61-102 (193)
318 COG0133 TrpB Tryptophan syntha 21.1 2.7E+02 0.0058 18.6 5.1 55 9-63 121-180 (396)
319 PF02737 3HCDH_N: 3-hydroxyacy 20.7 1.5E+02 0.0032 17.0 2.7 18 9-26 16-33 (180)
320 PRK04761 ppnK inorganic polyph 20.6 1.1E+02 0.0024 18.9 2.2 22 2-23 32-57 (246)
321 PRK06553 lipid A biosynthesis 20.3 2.3E+02 0.0051 17.7 5.9 33 6-38 123-156 (308)
322 cd07039 TPP_PYR_POX Pyrimidine 20.3 1.8E+02 0.0039 16.4 6.6 17 6-22 80-96 (164)
323 PLN00011 cysteine synthase 20.2 2.4E+02 0.0053 17.8 7.3 40 7-47 84-124 (323)
No 1
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.89 E-value=1.7e-23 Score=133.81 Aligned_cols=69 Identities=42% Similarity=0.666 Sum_probs=61.5
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
||||+||+.|++++|||+|++|+++||..||.++++.|+|+.++..+++.++|.++|+++++|++|+++
T Consensus 347 tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~ 415 (500)
T PF00201_consen 347 THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYKEN 415 (500)
T ss_dssp ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHH
T ss_pred eccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999986
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.87 E-value=3.3e-22 Score=129.17 Aligned_cols=69 Identities=29% Similarity=0.474 Sum_probs=67.1
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
||||.||+.|++++|||+|++|++.||+.||++++++|+|+.++..+++.++|.++|+++++|++|+++
T Consensus 370 tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~ 438 (507)
T PHA03392 370 TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKN 438 (507)
T ss_pred ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHH
Confidence 799999999999999999999999999999999999999999998889999999999999999999986
No 3
>PLN02670 transferase, transferring glycosyl groups
Probab=99.84 E-value=5.3e-21 Score=122.78 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=63.2
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecC----CCCCHHHHHHHHHHHhCCh---hhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEF----DNLNEDNIYDALITVLEDP---IFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~----~~~~~~~l~~~i~~~l~~~---~~~~~ 69 (70)
||||+||++|++++|||+|++|++.||+.||++++++|+|+.+.. +.++.++|.++|+++|.++ +||++
T Consensus 363 tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~ 438 (472)
T PLN02670 363 THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDK 438 (472)
T ss_pred ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHH
Confidence 799999999999999999999999999999999999999999864 2378999999999999876 68775
No 4
>PLN03004 UDP-glycosyltransferase
Probab=99.84 E-value=9.2e-21 Score=121.18 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecCC---CCCHHHHHHHHHHHhCChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFD---NLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~~---~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.++.. .+++++|.++|+++|++++||++
T Consensus 358 TH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~ 430 (451)
T PLN03004 358 THCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRER 430 (451)
T ss_pred ccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHH
Confidence 799999999999999999999999999999999986 7999999743 46999999999999999999876
No 5
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.83 E-value=7.8e-21 Score=122.18 Aligned_cols=69 Identities=19% Similarity=0.384 Sum_probs=62.0
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHH-HHHhCceeEecC-----------CCCCHHHHHHHHHHHhC-Chhhh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQR-IAKIKTGVVLEF-----------DNLNEDNIYDALITVLE-DPIFQ 67 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~-~~~~g~g~~~~~-----------~~~~~~~l~~~i~~~l~-~~~~~ 67 (70)
||||+||++|++++|||+|++|++.||+.||++ ++++|+|+.+.. ..++.++|.++|+++|. |++||
T Consensus 366 tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r 445 (481)
T PLN02554 366 THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVR 445 (481)
T ss_pred ccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHH
Confidence 799999999999999999999999999999955 677999999853 35789999999999996 78888
Q ss_pred hc
Q psy381 68 FF 69 (70)
Q Consensus 68 ~~ 69 (70)
++
T Consensus 446 ~~ 447 (481)
T PLN02554 446 KR 447 (481)
T ss_pred HH
Confidence 76
No 6
>PLN02208 glycosyltransferase family protein
Probab=99.83 E-value=1.5e-20 Score=119.94 Aligned_cols=65 Identities=15% Similarity=0.333 Sum_probs=59.7
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecCCC---CCHHHHHHHHHHHhCChh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFDN---LNEDNIYDALITVLEDPI 65 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~~~---~~~~~l~~~i~~~l~~~~ 65 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+...+ +++++|.++|++++++++
T Consensus 335 tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~ 403 (442)
T PLN02208 335 NHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDS 403 (442)
T ss_pred ccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCc
Confidence 799999999999999999999999999999999887 89999997544 899999999999997753
No 7
>PLN02210 UDP-glucosyl transferase
Probab=99.82 E-value=2.6e-20 Score=119.20 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=62.3
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecC----CCCCHHHHHHHHHHHhCChh---hhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEF----DNLNEDNIYDALITVLEDPI---FQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~----~~~~~~~l~~~i~~~l~~~~---~~~~ 69 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+.. +.+++++|.++|+++|.+++ +|++
T Consensus 348 tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~ 424 (456)
T PLN02210 348 THCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRR 424 (456)
T ss_pred eeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHH
Confidence 799999999999999999999999999999999998 899999863 35799999999999998764 6654
No 8
>PLN02562 UDP-glycosyltransferase
Probab=99.81 E-value=5e-20 Score=117.70 Aligned_cols=67 Identities=28% Similarity=0.411 Sum_probs=62.5
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+. +++++++.++|+++|.|++||++
T Consensus 352 tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 352 THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCHHHHHH
Confidence 799999999999999999999999999999999987 69998874 57899999999999999999876
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.81 E-value=8.2e-20 Score=116.84 Aligned_cols=63 Identities=27% Similarity=0.442 Sum_probs=59.2
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+. +.+++++|.++|+++|.++
T Consensus 348 tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 348 SHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred ecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999999987 49999997 5789999999999999875
No 10
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.81 E-value=8.6e-20 Score=115.52 Aligned_cols=69 Identities=35% Similarity=0.546 Sum_probs=67.0
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
||||+||++|++++|||++++|...||..||.++++.|+|+.++.+.++.+.+.++|+++|.|++|+++
T Consensus 306 ~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~ 374 (406)
T COG1819 306 HHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRA 374 (406)
T ss_pred ecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHH
Confidence 799999999999999999999999999999999999999999998899999999999999999999875
No 11
>PLN02207 UDP-glycosyltransferase
Probab=99.81 E-value=7.1e-20 Score=117.54 Aligned_cols=69 Identities=28% Similarity=0.482 Sum_probs=61.3
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecC-------CCCCHHHHHHHHHHHhC--Chhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEF-------DNLNEDNIYDALITVLE--DPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~-------~~~~~~~l~~~i~~~l~--~~~~~~~ 69 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+.. ..++.++|.++|+++|. +++||++
T Consensus 356 TH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~ 434 (468)
T PLN02207 356 SHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKR 434 (468)
T ss_pred ecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHH
Confidence 799999999999999999999999999999999887 899987631 23589999999999997 5788876
No 12
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.80 E-value=7.8e-20 Score=117.45 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=60.6
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHH-HHHhCceeEecC-------CCCCHHHHHHHHHHHhCCh-hhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQR-IAKIKTGVVLEF-------DNLNEDNIYDALITVLEDP-IFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~-~~~~g~g~~~~~-------~~~~~~~l~~~i~~~l~~~-~~~~~ 69 (70)
||||+||++|++++|||+|++|++.||+.||++ ++++|+|+.+.. ..+++++|.++|+++|.++ .||++
T Consensus 364 tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~ 441 (475)
T PLN02167 364 SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKK 441 (475)
T ss_pred eeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHH
Confidence 799999999999999999999999999999987 567999998853 2468999999999999764 66765
No 13
>PLN00414 glycosyltransferase family protein
Probab=99.80 E-value=2e-19 Score=114.97 Aligned_cols=64 Identities=17% Similarity=0.361 Sum_probs=58.6
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHH-HhCceeEecCC---CCCHHHHHHHHHHHhCCh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIA-KIKTGVVLEFD---NLNEDNIYDALITVLEDP 64 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~-~~g~g~~~~~~---~~~~~~l~~~i~~~l~~~ 64 (70)
||||+||++|++++|||+|++|++.||+.||++++ ++|+|+.+..+ .+++++|.++++++|.++
T Consensus 336 tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 336 NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 79999999999999999999999999999999996 58999999643 379999999999999764
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.79 E-value=2.5e-19 Score=115.25 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=59.4
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEe--------cCCCCCHHHHHHHHHHHhCCh---hhhh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVL--------EFDNLNEDNIYDALITVLEDP---IFQF 68 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~--------~~~~~~~~~l~~~i~~~l~~~---~~~~ 68 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +++|+.+ +...+++++|.++|+++|.++ +||+
T Consensus 369 tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~ 448 (482)
T PLN03007 369 THCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRL 448 (482)
T ss_pred ecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHH
Confidence 799999999999999999999999999999999875 4555544 334579999999999999887 7776
Q ss_pred c
Q psy381 69 F 69 (70)
Q Consensus 69 ~ 69 (70)
+
T Consensus 449 ~ 449 (482)
T PLN03007 449 R 449 (482)
T ss_pred H
Confidence 5
No 15
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.79 E-value=4.6e-19 Score=114.11 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=59.2
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHH-HhCceeEecC--CCCCHHHHHHHHHHHhCCh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIA-KIKTGVVLEF--DNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~-~~g~g~~~~~--~~~~~~~l~~~i~~~l~~~ 64 (70)
||||+||++|++++|||+|++|++.||+.||++++ ++|+|+.+.. ..++.++|.++|+++|.++
T Consensus 362 tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 362 THCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred ecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence 79999999999999999999999999999999995 7999999975 3489999999999999764
No 16
>PLN00164 glucosyltransferase; Provisional
Probab=99.79 E-value=2.4e-19 Score=115.42 Aligned_cols=65 Identities=20% Similarity=0.346 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecCC-----CCCHHHHHHHHHHHhCChh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFD-----NLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~~-----~~~~~~l~~~i~~~l~~~~ 65 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+... .+++++|.++|+++|.+++
T Consensus 363 tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~ 433 (480)
T PLN00164 363 THCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGE 433 (480)
T ss_pred eecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCc
Confidence 799999999999999999999999999999998865 8999988532 3689999999999998754
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.78 E-value=4.9e-19 Score=113.36 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecC-----CCCCHHHHHHHHHHHhCCh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEF-----DNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~-----~~~~~~~l~~~i~~~l~~~ 64 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+.. ..+++++|.++++++|.++
T Consensus 347 tHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 347 THCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred ecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 799999999999999999999999999999999998 699988752 2468999999999999764
No 18
>PLN02764 glycosyltransferase family protein
Probab=99.78 E-value=5.8e-19 Score=113.02 Aligned_cols=64 Identities=22% Similarity=0.422 Sum_probs=58.3
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecCC---CCCHHHHHHHHHHHhCCh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFD---NLNEDNIYDALITVLEDP 64 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~~---~~~~~~l~~~i~~~l~~~ 64 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+..+ .+++++|.++++++|+++
T Consensus 341 tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 341 SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 799999999999999999999999999999999975 8999887532 579999999999999874
No 19
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.78 E-value=5.2e-19 Score=113.78 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=61.0
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecC---CCCCHHHHHHHHHHHh-CChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEF---DNLNEDNIYDALITVL-EDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~---~~~~~~~l~~~i~~~l-~~~~~~~~ 69 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+.. ...+.+++.+++++++ ++++||++
T Consensus 367 tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~ 440 (477)
T PLN02863 367 THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERER 440 (477)
T ss_pred ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHH
Confidence 799999999999999999999999999999999765 799999853 2357899999999988 67788875
No 20
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.78 E-value=5.2e-19 Score=113.17 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=59.0
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecCC----CCCHHHHHHHHHHHhCChhh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFD----NLNEDNIYDALITVLEDPIF 66 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~~----~~~~~~l~~~i~~~l~~~~~ 66 (70)
||||+||++|++++|||+|++|++.||+.|++++++ +|+|+.+..+ .++.++|.++++++|.++++
T Consensus 341 tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~ 411 (449)
T PLN02173 341 THCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKS 411 (449)
T ss_pred ecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChH
Confidence 799999999999999999999999999999999998 5999888542 25899999999999987543
No 21
>KOG1192|consensus
Probab=99.78 E-value=3e-19 Score=114.02 Aligned_cols=69 Identities=32% Similarity=0.591 Sum_probs=62.4
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
||||+||++|++++|||++++|+++||..||+++++.|.+.++...+++...+.+++.+++.+++|+++
T Consensus 360 THgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~ 428 (496)
T KOG1192|consen 360 THGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEEYKEA 428 (496)
T ss_pred ECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHH
Confidence 799999999999999999999999999999999999988887776666655599999999999998875
No 22
>PLN02555 limonoid glucosyltransferase
Probab=99.77 E-value=9e-19 Score=112.77 Aligned_cols=64 Identities=28% Similarity=0.455 Sum_probs=58.6
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEec-----CCCCCHHHHHHHHHHHhCCh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLE-----FDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~-----~~~~~~~~l~~~i~~~l~~~ 64 (70)
||||+||++|++++|||+|++|++.||+.|++++++ +|+|+.+. ...++.++|.++|+++|.++
T Consensus 361 tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 361 THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE 430 (480)
T ss_pred ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc
Confidence 799999999999999999999999999999999998 59999993 34578999999999999764
No 23
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.76 E-value=1.6e-18 Score=108.29 Aligned_cols=67 Identities=30% Similarity=0.514 Sum_probs=62.6
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
||||+||++|++++|+|+|++|+..||..||+++++.|+|+.+...++++++|.++++++++++.++
T Consensus 310 ~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~~~~ 376 (401)
T cd03784 310 HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPPSRR 376 (401)
T ss_pred ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHHHHH
Confidence 7999999999999999999999999999999999999999999877789999999999999876554
No 24
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.76 E-value=1.3e-18 Score=111.48 Aligned_cols=69 Identities=28% Similarity=0.387 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecC--C-CCCHHHHHHHHHHHhCChh--hhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEF--D-NLNEDNIYDALITVLEDPI--FQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~--~-~~~~~~l~~~i~~~l~~~~--~~~~ 69 (70)
||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+.. . .++.++|.++|+++|++++ +|++
T Consensus 351 tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~ 425 (455)
T PLN02152 351 THCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRES 425 (455)
T ss_pred eeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 799999999999999999999999999999999998 577776642 2 3589999999999998754 4543
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.76 E-value=3.3e-18 Score=106.95 Aligned_cols=69 Identities=30% Similarity=0.529 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
||||.+|++|++++|+|+|++|...||..|++++++.|+|+.+...++++++|.++|+++++|++|+++
T Consensus 297 ~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~ 365 (392)
T TIGR01426 297 THGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAER 365 (392)
T ss_pred ECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHH
Confidence 699999999999999999999999999999999999999999988888999999999999999988765
No 26
>PLN03015 UDP-glucosyl transferase
Probab=99.74 E-value=7.3e-18 Score=108.36 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=56.7
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHH-HhCceeEec----CCCCCHHHHHHHHHHHhC
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIA-KIKTGVVLE----FDNLNEDNIYDALITVLE 62 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~-~~g~g~~~~----~~~~~~~~l~~~i~~~l~ 62 (70)
||||+||++|++++|||+|++|++.||..||++++ .+|+|+.+. .+.++.+.+.++|+++|.
T Consensus 359 tH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 359 SHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred ecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999995 589999985 235789999999999995
No 27
>PLN02534 UDP-glycosyltransferase
Probab=99.71 E-value=4.5e-17 Score=105.21 Aligned_cols=62 Identities=27% Similarity=0.455 Sum_probs=55.8
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecC------------C-CCCHHHHHHHHHHHhC
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEF------------D-NLNEDNIYDALITVLE 62 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~------------~-~~~~~~l~~~i~~~l~ 62 (70)
||||+||++|++++|||+|++|++.||+.|++++++ +|+|+.+.. + .++++++.++|+++|.
T Consensus 368 tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 368 THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999986 899987731 1 2689999999999996
No 28
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.64 E-value=1.2e-16 Score=90.49 Aligned_cols=67 Identities=30% Similarity=0.468 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCC----ChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFG----DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~----dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
||||.+|++|++++|+|+|++|+.. +|..|+..+++.|+++.+.....+++.|.+.|.+++.++..+
T Consensus 78 s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~ 148 (167)
T PF04101_consen 78 SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEKL 148 (167)
T ss_dssp ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-S
T ss_pred eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHHH
Confidence 6999999999999999999999987 999999999999999999887777899999999999887653
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.58 E-value=9.7e-15 Score=91.13 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=60.4
Q ss_pred CCCcHHHHHHHHHhCCceeeecCC-----CChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMF-----GDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~-----~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
||||.+|++|++++|+|+|++|+. .||..||+++++.|++..+..++++++.|.+++.+++.|++
T Consensus 258 sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~ 327 (352)
T PRK12446 258 SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNE 327 (352)
T ss_pred ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHH
Confidence 689999999999999999999984 48999999999999999998889999999999999998863
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.58 E-value=6.6e-15 Score=89.69 Aligned_cols=60 Identities=25% Similarity=0.510 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHhCCceeeecC--CCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHH
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPM--FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~--~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 60 (70)
|+||++|++|++++|+|+|++|. +.||..||+.+++.|+|+.++..+++++.|.++|+++
T Consensus 256 s~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 256 SKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred ECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 68999999999999999999999 7899999999999999999998899999999998764
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=2e-14 Score=90.09 Aligned_cols=65 Identities=23% Similarity=0.447 Sum_probs=60.4
Q ss_pred CCCcHHHHHHHHHhCCceeeecC-C---CChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPM-F---GDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~-~---~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
|++|++|+.|..+.|+|+|++|+ . .||..||+.+++.|+|.+++..+++++++.+.|.+++.+++
T Consensus 258 sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~ 326 (357)
T COG0707 258 SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPE 326 (357)
T ss_pred eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 68999999999999999999998 2 48899999999999999999999999999999999998754
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.50 E-value=5.1e-14 Score=86.62 Aligned_cols=64 Identities=27% Similarity=0.526 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHhCCceeeecCC--CChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMF--GDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~--~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
||||++|++|++++|+|++++|.. .||..||+.+++.|+|+.++..++ ++.+.+.++++|++|.
T Consensus 253 ~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 253 THGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred ECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH---HHHHHHHhcccccccc
Confidence 699999999999999999999984 489999999999999999986654 6666777777787764
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.40 E-value=1.9e-12 Score=80.06 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=62.3
Q ss_pred CCCcHHHHHHHHHhCCceeeecC----CCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPM----FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~----~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
+|+|.++++|++++|+|+|++|. ..+|..|+..+.+.|.|..++.++++++++.+++.++++|+++++.
T Consensus 258 ~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 330 (357)
T PRK00726 258 CRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEA 330 (357)
T ss_pred ECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHH
Confidence 46788999999999999999997 4689999999999999999988778899999999999999887654
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.20 E-value=1.2e-10 Score=71.54 Aligned_cols=68 Identities=28% Similarity=0.379 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHHhCCceeeecCC---CChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMF---GDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~---~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
++|.++++|++++|+|+|.+|.. .+|..|+..+.+.+.|..++.++.++++|.+++.++++|++++++
T Consensus 257 ~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 327 (348)
T TIGR01133 257 RAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEA 327 (348)
T ss_pred CCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHH
Confidence 56778999999999999999863 467889999999999999987777899999999999999887654
No 35
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.18 E-value=1.8e-10 Score=70.75 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHHhCCceeeecC----CCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM----FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~----~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
++|.++++|++++|+|+|++|. ..+|..|+..+.+.|.|..++..+.+++++.+++.++++|++.++.
T Consensus 259 ~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~ 330 (350)
T cd03785 259 RAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKA 330 (350)
T ss_pred CCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 5678899999999999999986 4678899999999999999987666899999999999998876543
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.11 E-value=1.9e-10 Score=72.16 Aligned_cols=65 Identities=29% Similarity=0.412 Sum_probs=59.1
Q ss_pred CCCcHHHHHHHHHhCCceeeecC---CCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPM---FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~---~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
+.||+||++|.+++|+|.+++|. .-||...|.+++++|+.-++.+++++++.+.+++...++.|+
T Consensus 300 Sm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 300 SMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPS 367 (400)
T ss_pred ecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCC
Confidence 46999999999999999999998 358899999999999999999999999999999999887543
No 37
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.07 E-value=7.4e-10 Score=69.88 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHHhCCceeee-cCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 2 QGGLQSLQEAFHYGVKLICI-PMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+|..|+.|++++|+|+|+. |...+|..|+..+.+.|+|+... +.+++.++|.++++|++.++
T Consensus 280 k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~~~~~ 343 (391)
T PRK13608 280 KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNEQLT 343 (391)
T ss_pred CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCHHHHH
Confidence 45778999999999999998 77777789999999999998866 78999999999999876554
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.89 E-value=1.1e-08 Score=63.98 Aligned_cols=64 Identities=23% Similarity=0.367 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHhCCceeee-cCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 2 QGGLQSLQEAFHYGVKLICI-PMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.+|..|++|++++|+|+|+. |...++..|+..+.+.|+++... +.+++.+++.++++|++.++.
T Consensus 280 ~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~~~~~~ 344 (380)
T PRK13609 280 KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDDMKLLQ 344 (380)
T ss_pred CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCHHHHHH
Confidence 45777899999999999985 66677889999999999988654 689999999999999876543
No 39
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.85 E-value=9.9e-09 Score=64.51 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHhCCceeeecCCCCh-HHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC-hhhhh
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMFGDQ-DLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED-PIFQF 68 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~~dq-~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~-~~~~~ 68 (70)
.+|.+|+.|++++|+|+|+.+....| ..|+..+.+.|.|+... +++++.++|.+++.| ++.++
T Consensus 289 ~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~----~~~~la~~i~~ll~~~~~~~~ 353 (382)
T PLN02605 289 KAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSE----SPKEIARIVAEWFGDKSDELE 353 (382)
T ss_pred CCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecC----CHHHHHHHHHHHHcCCHHHHH
Confidence 45778999999999999999765555 57999999999998663 799999999999987 66544
No 40
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.75 E-value=3.9e-08 Score=62.57 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHh----CceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI----KTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~----g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+|..| .|+.+.|+|+|++|+..+|. |+..+++. |.++.+.. .+.+.|.+.+.++++|++.++
T Consensus 303 rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l~~~l~~ll~d~~~~~ 369 (396)
T TIGR03492 303 MAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQAAQVVRQLLADPELLE 369 (396)
T ss_pred CcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHHHHHHHHHHcCHHHHH
Confidence 567766 99999999999999878886 99887774 77777653 356999999999999986553
No 41
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.61 E-value=4e-08 Score=62.19 Aligned_cols=67 Identities=18% Similarity=0.046 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHHhCCceeee----cCC---------CChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh----
Q psy381 2 QGGLQSLQEAFHYGVKLICI----PMF---------GDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP---- 64 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~----P~~---------~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~---- 64 (70)
.+|..|+ |++++|+|+|++ |+. ..|..|+..+.+.++...+..++++++.|.+.+.+++.|+
T Consensus 274 ~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~ 352 (385)
T TIGR00215 274 ASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAY 352 (385)
T ss_pred cCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccH
Confidence 4677777 999999999999 762 1377799999999999888888899999999999999998
Q ss_pred hhhhc
Q psy381 65 IFQFF 69 (70)
Q Consensus 65 ~~~~~ 69 (70)
+++++
T Consensus 353 ~~~~~ 357 (385)
T TIGR00215 353 KEMHR 357 (385)
T ss_pred HHHHH
Confidence 76654
No 42
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=2.5e-07 Score=59.24 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
+||+| .+|.+++++|+|..|+...|..-++.+.+.|+++.++ +.+.+.+++..+++|+..++.
T Consensus 330 ~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~----~~~~l~~~v~~l~~~~~~r~~ 392 (419)
T COG1519 330 IGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE----DADLLAKAVELLLADEDKREA 392 (419)
T ss_pred CCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC----CHHHHHHHHHHhcCCHHHHHH
Confidence 68888 9999999999999999999999999999999999998 578888888888888766543
No 43
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.47 E-value=7.3e-07 Score=56.61 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=50.3
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
|..+++|++++|+|+|..|...++......+.+.|+++... +.++|.+++.++++|++.++.
T Consensus 333 ~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~~La~~l~~ll~~~~~~~~ 394 (425)
T PRK05749 333 GGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAEDLAKAVTYLLTDPDARQA 394 (425)
T ss_pred CCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHHHHHHHHHHHhcCHHHHHH
Confidence 34459999999999999998888877777776677666544 789999999999999876654
No 44
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.38 E-value=2.9e-07 Score=57.38 Aligned_cols=67 Identities=15% Similarity=0.034 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHHhCCceeeecCCCC--------hHHH-----HHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMFGD--------QDLN-----AQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~~d--------q~~n-----a~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+|.+++ |++++|+|+|.+|.... |..| +..+.+.+++..+.....+++.+.+.+.++++|++.++
T Consensus 268 ~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 268 ASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred CccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 4577766 99999999999965321 2111 12223333344444456689999999999999988775
Q ss_pred c
Q psy381 69 F 69 (70)
Q Consensus 69 ~ 69 (70)
+
T Consensus 347 ~ 347 (380)
T PRK00025 347 A 347 (380)
T ss_pred H
Confidence 4
No 45
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.31 E-value=5.4e-07 Score=55.01 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHhCCceeeecCCCChHHHHHHH
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRI 34 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~ 34 (70)
|+|| +|++|+++.|+|+|++|...+|..||+.+
T Consensus 247 s~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 247 GAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred ECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 4677 89999999999999999999999999753
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=3.9e-06 Score=51.84 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhcC
Q psy381 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFFL 70 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~l 70 (70)
+|..|++|+++.|+|.+++|+...|..-|+.++.+|+-..+... +..+.+...+.+++.|+..|.++
T Consensus 234 AaGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~~rk~l 300 (318)
T COG3980 234 AAGSTLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDYARRKNL 300 (318)
T ss_pred ccchHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhhCHHHhhhh
Confidence 35568999999999999999999999999999999988777543 57888888889999998888764
No 47
>KOG3349|consensus
Probab=98.22 E-value=1.7e-06 Score=49.03 Aligned_cols=43 Identities=21% Similarity=0.074 Sum_probs=38.0
Q ss_pred CCCcHHHHHHHHHhCCceeeecC----CCChHHHHHHHHHhCceeEe
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPM----FGDQDLNAQRIAKIKTGVVL 43 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~----~~dq~~na~~~~~~g~g~~~ 43 (70)
+|+|+||++|.+..|+|.|+++. ..+|..-|..+++.|.=..-
T Consensus 86 sHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C 132 (170)
T KOG3349|consen 86 SHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYC 132 (170)
T ss_pred ecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEe
Confidence 69999999999999999999996 57899999999998865443
No 48
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.99 E-value=2e-05 Score=47.76 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.++++|++++|+|+|+.+... +...+.+.+.|..+... +.+++.+.+.+++.|++.++.
T Consensus 280 ~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~~~~~~~ 338 (364)
T cd03814 280 GLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEPG--DAEAFAAALAALLADPELRRR 338 (364)
T ss_pred CcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCCC--CHHHHHHHHHHHHcCHHHHHH
Confidence 478999999999999988654 33445556788877643 678899999999998876543
No 49
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.98 E-value=2e-05 Score=48.42 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+++.|++++|+|+|.-+... +...+.+.+.|..++.. +.+++.+++.++++|++.++
T Consensus 284 ~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~~~~~ 341 (367)
T cd05844 284 PVVLLEAQASGVPVVATRHGG----IPEAVEDGETGLLVPEG--DVAALAAALGRLLADPDLRA 341 (367)
T ss_pred chHHHHHHHcCCCEEEeCCCC----chhheecCCeeEEECCC--CHHHHHHHHHHHHcCHHHHH
Confidence 578999999999999987643 44555666788888643 68999999999999876443
No 50
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.92 E-value=5.3e-05 Score=45.22 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhC-ceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIK-TGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.+++.|++++|+|+|+.+....+ ..+...+ .|..++.. +.+++.+++.++++|++.++.
T Consensus 266 ~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~~~~~~--~~~~~~~~i~~ll~~~~~~~~ 325 (348)
T cd03820 266 PMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGLLVPNG--DVEALAEALLRLMEDEELRKR 325 (348)
T ss_pred CHHHHHHHHcCCCEEEecCCCch----HhhhccCcceEEeCCC--CHHHHHHHHHHHHcCHHHHHH
Confidence 46899999999999987654432 2233444 78777633 689999999999999876654
No 51
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.85 E-value=4.1e-05 Score=42.86 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
+...++.|++++|+|+|+... ..+...+.+...|..++.. +.+++.++|.+++++++.++.
T Consensus 104 ~~~~~~~Ea~~~g~pvI~~~~----~~~~e~~~~~~~g~~~~~~--~~~~l~~~i~~~l~~~~~~~~ 164 (172)
T PF00534_consen 104 GFGLSLLEAMACGCPVIASDI----GGNNEIINDGVNGFLFDPN--DIEELADAIEKLLNDPELRQK 164 (172)
T ss_dssp SS-HHHHHHHHTT-EEEEESS----THHHHHSGTTTSEEEESTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccceeeccc----cCCceeeccccceEEeCCC--CHHHHHHHHHHHHCCHHHHHH
Confidence 345689999999999998653 3345555566678888754 899999999999999876654
No 52
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.83 E-value=8.7e-05 Score=45.21 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHH-HhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIA-KIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~-~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
..++.|++++|+|+|..+...... .+. ..+.|..++.. +.+++.++|.++++|++.+++
T Consensus 279 g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~~~g~~~~~~--d~~~~~~~i~~l~~~~~~~~~ 338 (357)
T cd03795 279 GIVLLEAMAFGKPVISTEIGTGGS----YVNLHGVTGLVVPPG--DPAALAEAIRRLLEDPELRER 338 (357)
T ss_pred chHHHHHHHcCCCEEecCCCCchh----HHhhCCCceEEeCCC--CHHHHHHHHHHHHHCHHHHHH
Confidence 457999999999999986554332 222 25677777633 699999999999999876543
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.77 E-value=6.6e-05 Score=44.88 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
|..++++|++++|+|+|+.+... ....+...+.|..++.. +++++.+++.+++.|++.++
T Consensus 287 ~~~~~~~Ea~~~g~pvI~~~~~~----~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~ 346 (374)
T cd03801 287 GFGLVLLEAMAAGLPVVASDVGG----IPEVVEDGETGLLVPPG--DPEALAEAILRLLDDPELRR 346 (374)
T ss_pred cccchHHHHHHcCCcEEEeCCCC----hhHHhcCCcceEEeCCC--CHHHHHHHHHHHHcChHHHH
Confidence 34578999999999999987632 34445546778777643 58999999999998876544
No 54
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.75 E-value=0.0001 Score=44.66 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+++.|++++|+|+|+.+....+. .+.+.+.|..++.. +.+++.+++.+++.|++.++
T Consensus 313 p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~ 370 (394)
T cd03794 313 PSKLFEYMAAGKPVLASVDGESAE----LVEEAGAGLVVPPG--DPEALAAAILELLDDPEERA 370 (394)
T ss_pred chHHHHHHHCCCcEEEecCCCchh----hhccCCcceEeCCC--CHHHHHHHHHHHHhChHHHH
Confidence 456899999999999998765433 22233677777643 68999999999998876654
No 55
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.75 E-value=0.00014 Score=43.86 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
...++.|++++|+|+|..+... ....+.+.+.|..+... +.+++.+++.++++|+..++
T Consensus 276 ~~~~~~Ea~a~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~~~~~ 334 (359)
T cd03823 276 FPLVIREALAAGVPVIASDIGG----MAELVRDGVNGLLFPPG--DAEDLAAALERLIDDPDLLE 334 (359)
T ss_pred CChHHHHHHHCCCCEEECCCCC----HHHHhcCCCcEEEECCC--CHHHHHHHHHHHHhChHHHH
Confidence 3467999999999999986543 34455555678888754 58999999999999876544
No 56
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.73 E-value=0.00017 Score=45.05 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=41.6
Q ss_pred HHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 7 SLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.+.|++++|+|+|.++...++.. +.+.|.+..+. .+++++.+++.++++|++.+++
T Consensus 285 ~~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~---~d~~~i~~ai~~ll~~~~~~~~ 340 (365)
T TIGR00236 285 VQEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG---TDKENITKAAKRLLTDPDEYKK 340 (365)
T ss_pred HHHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC---CCHHHHHHHHHHHHhChHHHHH
Confidence 37999999999999976554432 33356666553 2789999999999998876654
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.71 E-value=0.00015 Score=43.40 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.++++|++++|+|+|..+.... ...+.+.+.|..++.. +++++.+++.+++.|++.++
T Consensus 277 ~~~~~Ea~~~G~Pvi~s~~~~~----~~~i~~~~~g~~~~~~--~~~~~~~~i~~l~~~~~~~~ 334 (359)
T cd03808 277 PRVLLEAMAMGRPVIATDVPGC----REAVIDGVNGFLVPPG--DAEALADAIERLIEDPELRA 334 (359)
T ss_pred chHHHHHHHcCCCEEEecCCCc----hhhhhcCcceEEECCC--CHHHHHHHHHHHHhCHHHHH
Confidence 5789999999999999765432 3444445678777643 68999999999998876543
No 58
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.70 E-value=0.00016 Score=46.08 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
..+++||+++|+|+|.....+ ....+.+...|..+... .+.+++.++|.++++|++.++.
T Consensus 324 p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~~-~~~~~la~~I~~ll~~~~~~~~ 383 (407)
T cd04946 324 PVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSKD-PTPNELVSSLSKFIDNEEEYQT 383 (407)
T ss_pred cHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCCC-CCHHHHHHHHHHHHhCHHHHHH
Confidence 467999999999999876433 23444444578877642 3689999999999998776543
No 59
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.66 E-value=0.00017 Score=44.68 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
..+++||+++|+|+|+.+... ....+.+.+.|..++.. +.+++.+.|.++++|++.++
T Consensus 316 ~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~~~~~~ 373 (398)
T cd03800 316 GLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPR--DPEALAAALRRLLTDPALRR 373 (398)
T ss_pred CcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCC--CHHHHHHHHHHHHhCHHHHH
Confidence 357999999999999876543 34455556788888643 68999999999998876543
No 60
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.59 E-value=0.0004 Score=35.52 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=41.0
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhC-ceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIK-TGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
-...++|++++|+|+|.-+. ...... -..| -++.++ +++++.+.+..+++|+..+++
T Consensus 11 ~~~r~~E~~a~G~~vi~~~~----~~~~~~-~~~~~~~~~~~----~~~el~~~i~~ll~~~~~~~~ 68 (92)
T PF13524_consen 11 PNMRIFEAMACGTPVISDDS----PGLREI-FEDGEHIITYN----DPEELAEKIEYLLENPEERRR 68 (92)
T ss_pred CchHHHHHHHCCCeEEECCh----HHHHHH-cCCCCeEEEEC----CHHHHHHHHHHHHCCHHHHHH
Confidence 34578999999999999864 222222 2233 344444 899999999999999987664
No 61
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.58 E-value=0.00018 Score=43.73 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.++++||+++|+|+|..+... ...+...+.|..++.. +.+++.+++.++++|++.++
T Consensus 283 ~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~~--d~~~~~~~l~~l~~~~~~~~ 339 (366)
T cd03822 283 SGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPPG--DPAALAEAIRRLLADPELAQ 339 (366)
T ss_pred chHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcCC--CHHHHHHHHHHHHcChHHHH
Confidence 468999999999999987644 3334455678777643 58999999999999865443
No 62
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.58 E-value=0.00026 Score=44.03 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
..+++||+++|+|+|..+... +...+.+...|..++.. +.+++.+++.+++++++.+
T Consensus 286 ~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~--d~~~la~~i~~l~~~~~~~ 342 (374)
T TIGR03088 286 SNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPPG--DAVALARALQPYVSDPAAR 342 (374)
T ss_pred chHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCCC--CHHHHHHHHHHHHhCHHHH
Confidence 578999999999999977543 23344444567777643 6899999999999887544
No 63
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.58 E-value=0.00035 Score=42.72 Aligned_cols=58 Identities=9% Similarity=-0.059 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.++++||+++|+|+|....... ...+.+ +.+..... -+++++.++|.++++|++.+++
T Consensus 280 ~~~~lEAma~G~PvI~s~~~~~----~~~i~~-~~~~~~~~--~~~~~~a~~i~~l~~~~~~~~~ 337 (358)
T cd03812 280 PLVLIEAQASGLPCILSDTITK----EVDLTD-LVKFLSLD--ESPEIWAEEILKLKSEDRRERS 337 (358)
T ss_pred CHHHHHHHHhCCCEEEEcCCch----hhhhcc-CccEEeCC--CCHHHHHHHHHHHHhCcchhhh
Confidence 5789999999999999765432 223333 45554442 2589999999999999877654
No 64
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00025 Score=39.90 Aligned_cols=45 Identities=22% Similarity=0.134 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHhCCceeeecC--------CCChHHHHHHHHHhCceeEecC
Q psy381 1 MQGGLQSLQEAFHYGVKLICIPM--------FGDQDLNAQRIAKIKTGVVLEF 45 (70)
Q Consensus 1 ~hgG~~t~~e~l~~g~P~l~~P~--------~~dq~~na~~~~~~g~g~~~~~ 45 (70)
+|+|.||++.++..++|.|++|. ..+|..-|..+++.+.-+...+
T Consensus 71 SHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~sp 123 (161)
T COG5017 71 SHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSP 123 (161)
T ss_pred eccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcC
Confidence 69999999999999999999997 3468889999999887776654
No 65
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.55 E-value=0.00035 Score=43.46 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCC----HHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLN----EDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~----~~~l~~~i~~~l~~~~~~~ 68 (70)
..+++|++++|+|+|...... ....+.+...|..++..+.+ .+.+.++|.++++|++.++
T Consensus 294 g~~~lEA~a~G~PvI~s~~~~----~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~ 357 (388)
T TIGR02149 294 GIVNLEAMACGTPVVASATGG----IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAK 357 (388)
T ss_pred ChHHHHHHHcCCCEEEeCCCC----HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHH
Confidence 356899999999999986533 34445555678888754422 2789999999998876543
No 66
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.53 E-value=0.00031 Score=42.28 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=40.5
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
..+++.||+++|+|+|+..... +...+.+ .|..+... +.+++.+++.+++++++.+
T Consensus 281 ~~~~~~Ea~a~g~PvI~~~~~~----~~e~~~~--~g~~~~~~--~~~~l~~~i~~l~~~~~~~ 336 (365)
T cd03807 281 FPNVLLEAMACGLPVVATDVGD----NAELVGD--TGFLVPPG--DPEALAEAIEALLADPALR 336 (365)
T ss_pred CCcHHHHHHhcCCCEEEcCCCC----hHHHhhc--CCEEeCCC--CHHHHHHHHHHHHhChHHH
Confidence 3578999999999999876533 2333333 56666543 6899999999999886544
No 67
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.53 E-value=0.00035 Score=44.66 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC-Chhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE-DPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~-~~~~~~ 68 (70)
.++++||+++|+|+|.....+ ....+.+-..|..++.. +.+++.++|.++++ |++.++
T Consensus 318 p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~lv~~~--d~~~la~ai~~l~~~d~~~~~ 376 (406)
T PRK15427 318 PVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWLVPEN--DAQALAQRLAAFSQLDTDELA 376 (406)
T ss_pred cHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEEeCCC--CHHHHHHHHHHHHhCCHHHHH
Confidence 367899999999999986543 22334444578887744 69999999999998 876543
No 68
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.52 E-value=0.00012 Score=46.31 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred CCcHHHHHHHHHhCCceeee-cCCCChHHHHHHHH---HhCceeEe-------------cCCCCCHHHHHHHHHH
Q psy381 2 QGGLQSLQEAFHYGVKLICI-PMFGDQDLNAQRIA---KIKTGVVL-------------EFDNLNEDNIYDALIT 59 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~-P~~~dq~~na~~~~---~~g~g~~~-------------~~~~~~~~~l~~~i~~ 59 (70)
.+|..|+ |+...|+|+++. .....|+.|++++. ..|+.-++ -.++++++.|.+.+.+
T Consensus 242 ~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~ 315 (347)
T PRK14089 242 CSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE 315 (347)
T ss_pred cCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH
Confidence 4678877 999999999994 23567889999999 45655444 3366889999888876
No 69
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.50 E-value=0.00032 Score=43.50 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
..+++||+++|+|+|....... ....+.+...|..++.. +.+++.++|.+++.|++..+
T Consensus 292 ~~~~lEAma~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~ 350 (372)
T cd04949 292 GLSLMEALSHGLPVISYDVNYG---PSEIIEDGENGYLVPKG--DIEALAEAIIELLNDPKLLQ 350 (372)
T ss_pred ChHHHHHHhCCCCEEEecCCCC---cHHHcccCCCceEeCCC--cHHHHHHHHHHHHcCHHHHH
Confidence 4689999999999998754211 23445555678888743 68999999999999875443
No 70
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.47 E-value=0.00037 Score=42.90 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
..++.||+++|+|+|..+... ....+.+...|..++.. +.+++.+++.++++|+..++
T Consensus 284 ~~~~~EAma~g~PvI~s~~~~----~~e~i~~~~~G~~~~~~--~~~~l~~~i~~l~~~~~~~~ 341 (371)
T cd04962 284 GLAALEAMACGVPVVASNAGG----IPEVVKHGETGFLVDVG--DVEAMAEYALSLLEDDELWQ 341 (371)
T ss_pred ccHHHHHHHcCCCEEEeCCCC----chhhhcCCCceEEcCCC--CHHHHHHHHHHHHhCHHHHH
Confidence 468999999999999976532 34444444567776643 68999999999998876543
No 71
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.46 E-value=0.00032 Score=42.41 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=42.2
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
...++.|++++|+|+|..+... .+..+.+.+.|..++..+ . ++.+++.+++++++.+
T Consensus 291 ~~~~~~Ea~~~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 291 QGLVLLEAMAAGLPVVAVDAPG----LPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELR 347 (374)
T ss_pred cChHHHHHHHcCCcEEEeCCCC----hhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHH
Confidence 3468999999999999986532 344555557788887433 2 8999999999987643
No 72
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.45 E-value=0.00031 Score=44.28 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.+++||+++|+|+|...... ....+.+...|..++.. +++++.++|.++++|++.++.
T Consensus 315 ~~llEAmA~G~PVIas~~~g----~~e~i~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~ 372 (396)
T cd03818 315 WSLLEAMACGCLVVGSDTAP----VREVITDGENGLLVDFF--DPDALAAAVIELLDDPARRAR 372 (396)
T ss_pred hHHHHHHHCCCCEEEcCCCC----chhhcccCCceEEcCCC--CHHHHHHHHHHHHhCHHHHHH
Confidence 57899999999999975432 23344444567777643 699999999999999866543
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.43 E-value=0.00058 Score=41.57 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=42.4
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
..++++|++++|+|+|..+... ....+.+...|..+... +.+++.++|.+++.++..+
T Consensus 274 ~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~ 331 (355)
T cd03799 274 LPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLLVPPG--DPEALADAIERLLDDPELR 331 (355)
T ss_pred ccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEEeCCC--CHHHHHHHHHHHHhCHHHH
Confidence 3578999999999999976533 12233334478777643 6899999999999887643
No 74
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.42 E-value=0.00055 Score=44.01 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
..+++||+++|+|+|...... ....+.+...|..++.. +++++.++|.++++|++.++
T Consensus 354 g~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~ 411 (439)
T TIGR02472 354 GLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDVL--DLEAIASALEDALSDSSQWQ 411 (439)
T ss_pred ccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHhCHHHHH
Confidence 358999999999999986543 23334444578887654 68999999999999876544
No 75
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.42 E-value=0.00053 Score=44.34 Aligned_cols=59 Identities=25% Similarity=0.224 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHH---hCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK---IKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~---~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
..+++|++++|+|+|.....+ ....+.+ .+.|..++.+ +++++.++|.++++|++.++.
T Consensus 345 g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~ 406 (465)
T PLN02871 345 GFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG--DVDDCVEKLETLLADPELRER 406 (465)
T ss_pred CcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC--CHHHHHHHHHHHHhCHHHHHH
Confidence 357899999999999876532 1223333 5678888744 689999999999998876543
No 76
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.41 E-value=0.00039 Score=43.89 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+.+.|++++|+|+|..+...+.. ....+.|..+. .+++++.++|.++++|++.++
T Consensus 312 ~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---~~~~~la~ai~~ll~~~~~~~ 367 (397)
T TIGR03087 312 QNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---ADPADFAAAILALLANPAERE 367 (397)
T ss_pred ccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC---CCHHHHHHHHHHHHcCHHHHH
Confidence 357999999999999987532211 12245676664 279999999999999987554
No 77
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.41 E-value=0.00055 Score=43.75 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC---hhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED---PIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~---~~~~~ 68 (70)
.++++|++++|+|+|..... .....+++...|..+. +.+++.++|.++++| ++.++
T Consensus 331 p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~----d~~~la~~i~~ll~~~~~~~~~~ 389 (415)
T cd03816 331 PMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG----DSEELAEQLIDLLSNFPNRGKLN 389 (415)
T ss_pred cHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC----CHHHHHHHHHHHHhcCCCHHHHH
Confidence 46799999999999997543 2344555666788874 799999999999998 65444
No 78
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.39 E-value=0.0005 Score=42.59 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
+.+.|++++|+|+|.++...+ +..+.+.|++..+. + +.+++.+++.++++++..+++
T Consensus 287 gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~~~~--~-~~~~i~~~i~~ll~~~~~~~~ 343 (363)
T cd03786 287 GIQEEASFLGVPVLNLRDRTE----RPETVESGTNVLVG--T-DPEAILAAIEKLLSDEFAYSL 343 (363)
T ss_pred cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEEecC--C-CHHHHHHHHHHHhcCchhhhc
Confidence 557799999999999974322 33455567665554 2 589999999999998765543
No 79
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.37 E-value=0.00064 Score=42.74 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
..+++|++++|+|+|...... ....+.+...|..++.. +.+++.++|.+++++++.++
T Consensus 316 g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~--d~~~la~~i~~~l~~~~~~~ 373 (405)
T TIGR03449 316 GLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDGH--DPADWADALARLLDDPRTRI 373 (405)
T ss_pred ChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCCC--CHHHHHHHHHHHHhCHHHHH
Confidence 357999999999999976543 22334445677777643 68999999999998876543
No 80
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.35 E-value=0.00037 Score=45.74 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCcHHHHHHHHHhCCceeeecCCC-ChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMFG-DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~~-dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+|.+|.+|+++.|||+|..|-.. -.+.-+..+...|+...+-. +.++-.+..-++-.|+++++
T Consensus 371 ~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~---s~~eYv~~Av~La~D~~~l~ 435 (468)
T PF13844_consen 371 YNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD---SEEEYVEIAVRLATDPERLR 435 (468)
T ss_dssp S--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S---SHHHHHHHHHHHHH-HHHHH
T ss_pred CCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC---CHHHHHHHHHHHhCCHHHHH
Confidence 368899999999999999998532 23456667777888866543 55655555555555655443
No 81
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.34 E-value=0.0012 Score=39.69 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=42.4
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
..+++.|++++|+|+|+-+... ....+.+...|..+... +.+++.+++.++++++.
T Consensus 291 ~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 291 FGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVPPG--DPEALAEAILRLLADPW 346 (377)
T ss_pred CChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEECCC--CHHHHHHHHHHHhcCcH
Confidence 4578999999999999877543 23445555667777633 78999999999998876
No 82
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.31 E-value=0.0011 Score=40.11 Aligned_cols=56 Identities=21% Similarity=0.125 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+++.|++++|+|+|+.+... ....+.. +.|...+. +.+++.++|.+++++++.++
T Consensus 295 ~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~---~~~~~~~~i~~l~~~~~~~~ 350 (375)
T cd03821 295 GIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD---DVDALAAALRRALELPQRLK 350 (375)
T ss_pred CcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC---ChHHHHHHHHHHHhCHHHHH
Confidence 467999999999999986543 2333333 67777653 45999999999999865443
No 83
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.27 E-value=0.0017 Score=41.16 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
+.+.|++++|+|+|.....+... ...+. +.|+.++.+ +.+++.++|.++++|+..++
T Consensus 322 ~kl~eama~G~PVi~s~~~g~~~--~~~i~--~~G~~~~~~--d~~~la~~i~~l~~~~~~~~ 378 (412)
T PRK10307 322 SKLTNMLASGRNVVATAEPGTEL--GQLVE--GIGVCVEPE--SVEALVAAIAALARQALLRP 378 (412)
T ss_pred HHHHHHHHcCCCEEEEeCCCchH--HHHHh--CCcEEeCCC--CHHHHHHHHHHHHhCHHHHH
Confidence 45789999999999986543211 11222 688888744 68999999999998876554
No 84
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.23 E-value=0.0016 Score=42.41 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHh------CceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI------KTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~------g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.++++|++++|+|+|...... ....+.+. ..|..++.. +++++.+++.++++|++.++.
T Consensus 384 p~~vlEAma~G~PVVatd~g~----~~elv~~~~~~~~g~~G~lv~~~--d~~~la~ai~~ll~~~~~~~~ 448 (475)
T cd03813 384 PLVILEAMAAGIPVVATDVGS----CRELIEGADDEALGPAGEVVPPA--DPEALARAILRLLKDPELRRA 448 (475)
T ss_pred ChHHHHHHHcCCCEEECCCCC----hHHHhcCCcccccCCceEEECCC--CHHHHHHHHHHHhcCHHHHHH
Confidence 468999999999999965432 22333331 267777643 689999999999999876543
No 85
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.18 E-value=0.00077 Score=41.19 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
..+++|++++|+|+|......- ...+.+.+.|..++.. +.+++.+++.++++|++.+
T Consensus 278 g~~~~Eam~~g~PvI~~~~~~~----~e~~~~~~~g~~~~~~--~~~~~~~~l~~l~~~~~~~ 334 (365)
T cd03825 278 PNTAIEALACGTPVVAFDVGGI----PDIVDHGVTGYLAKPG--DPEDLAEGIEWLLADPDER 334 (365)
T ss_pred cHHHHHHHhcCCCEEEecCCCC----hhheeCCCceEEeCCC--CHHHHHHHHHHHHhCHHHH
Confidence 4789999999999998765321 1223333467666532 6889999999999887633
No 86
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.18 E-value=0.0019 Score=40.89 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIF 66 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~ 66 (70)
.+++||+++|+|+|.....+ +...+.+...|..+.. ..+++++.++|.++++|++.
T Consensus 292 ~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~-~~d~~~la~~I~~ll~d~~~ 347 (380)
T PRK15484 292 MVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLAE-PMTSDSIISDINRTLADPEL 347 (380)
T ss_pred cHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEeC-CCCHHHHHHHHHHHHcCHHH
Confidence 57899999999999987533 2333444456764432 23799999999999998764
No 87
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.17 E-value=0.0013 Score=39.20 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHH---HHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNI---YDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l---~~~i~~~l~~~~~~~ 68 (70)
.++++|++++|+|+|+.... .....+.+...|..++.. +.+.+ .+.+.++..+++.+.
T Consensus 277 ~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 337 (353)
T cd03811 277 PNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG--DEAALAAAALALLDLLLDPELRE 337 (353)
T ss_pred CcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC--CHHHHHHHHHHHHhccCChHHHH
Confidence 46799999999999987554 334566667788888643 56666 566667777665443
No 88
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.10 E-value=0.0021 Score=40.12 Aligned_cols=56 Identities=25% Similarity=0.258 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCceeeec-CCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhh
Q psy381 5 LQSLQEAFHYGVKLICIP-MFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIF 66 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P-~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~ 66 (70)
..++.||+++|+|+|... ..+ ....+.+...|..++.. +.+++.++|.++++|++.
T Consensus 271 ~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~~--d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 271 PMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTPG--NIDEFVGKLNKVISGEVK 327 (359)
T ss_pred ChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECCC--CHHHHHHHHHHHHhCccc
Confidence 478999999999999875 433 11334444568777643 799999999999998863
No 89
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.00 E-value=0.0024 Score=39.75 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+++||+++|+|+|..-... ....+.+.+.|..++. +++++.++|.+++++++.++
T Consensus 314 ~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~~---~~~~~a~~i~~l~~~~~~~~ 369 (392)
T cd03805 314 IVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCEP---TPEEFAEAMLKLANDPDLAD 369 (392)
T ss_pred chHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeCC---CHHHHHHHHHHHHhChHHHH
Confidence 57899999999999975433 1233444456777652 68999999999999876544
No 90
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.95 E-value=0.0032 Score=44.94 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.+++||+++|+|+|.....+- ...+.....|+.+++. +++.|.++|.+++.|+..++.
T Consensus 586 LvlLEAMAcGlPVVASdvGG~----~EII~~g~nGlLVdP~--D~eaLA~AL~~LL~Dpelr~~ 643 (1050)
T TIGR02468 586 LTLIEAAAHGLPMVATKNGGP----VDIHRVLDNGLLVDPH--DQQAIADALLKLVADKQLWAE 643 (1050)
T ss_pred HHHHHHHHhCCCEEEeCCCCc----HHHhccCCcEEEECCC--CHHHHHHHHHHHhhCHHHHHH
Confidence 679999999999999875431 1223333468888754 689999999999999876553
No 91
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.94 E-value=0.0011 Score=40.84 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
.++.|++++|+|+|...... ....+.+...|..++.+ +++.+.++|.++++|+
T Consensus 275 ~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~--~~~~la~~i~~l~~~~ 327 (351)
T cd03804 275 IVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ--TVESLAAAVERFEKNE 327 (351)
T ss_pred chHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC--CHHHHHHHHHHHHhCc
Confidence 45789999999999986533 12334444678887643 6888999999999887
No 92
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=96.93 E-value=0.00083 Score=40.98 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHh-CChhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL-EDPIFQ 67 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l-~~~~~~ 67 (70)
.++++|++++|+|+|..... .....+.+ .|..+.. .+.+++.+++.+++ .++.++
T Consensus 276 ~~~~~Ea~a~G~PvI~~~~~----~~~e~i~~--~g~~~~~--~~~~~~~~~i~~ll~~~~~~~ 331 (360)
T cd04951 276 GLVVAEAMACELPVVATDAG----GVREVVGD--SGLIVPI--SDPEALANKIDEILKMSGEER 331 (360)
T ss_pred ChHHHHHHHcCCCEEEecCC----ChhhEecC--CceEeCC--CCHHHHHHHHHHHHhCCHHHH
Confidence 46799999999999986542 22333333 4444543 27889999999998 444443
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.92 E-value=0.0025 Score=39.84 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
..+++||+++|+|+|......- ...+.+...|..++ +.+.+..+|.+++.+++.++
T Consensus 287 g~~~lEA~a~G~Pvv~s~~~~~----~~~i~~~~~g~~~~----~~~~~a~~i~~ll~~~~~~~ 342 (372)
T cd03792 287 GLTVTEALWKGKPVIAGPVGGI----PLQIEDGETGFLVD----TVEEAAVRILYLLRDPELRR 342 (372)
T ss_pred CHHHHHHHHcCCCEEEcCCCCc----hhhcccCCceEEeC----CcHHHHHHHHHHHcCHHHHH
Confidence 3589999999999999765331 22344445676665 46677889999998877654
No 94
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.88 E-value=0.00089 Score=36.03 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
.+++.|++++|+|+|+.+.. .....+..+.+..+. + +++++.+++.++++|
T Consensus 85 ~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~~~~~~~~--~-~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 85 PNKLLEAMAAGKPVIASDNG-----AEGIVEEDGCGVLVA--N-DPEELAEAIERLLND 135 (135)
T ss_dssp -HHHHHHHCTT--EEEEHHH-----CHCHS---SEEEE-T--T--HHHHHHHHHHHHH-
T ss_pred cHHHHHHHHhCCCEEECCcc-----hhhheeecCCeEEEC--C-CHHHHHHHHHHHhcC
Confidence 47899999999999998751 122333356776662 2 899999999999865
No 95
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.87 E-value=0.0055 Score=37.44 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHh-CChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL-EDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l-~~~~~~~ 68 (70)
.++++||+++|+|+|+..... ....+.+...|..++.+ +.+.+.++|..++ .+++.++
T Consensus 278 ~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~ 336 (355)
T cd03819 278 GRTAVEAQAMGRPVIASDHGG----ARETVRPGETGLLVPPG--DAEALAQALDQILSLLPEGRA 336 (355)
T ss_pred chHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceEEeCCC--CHHHHHHHHHHHHhhCHHHHH
Confidence 468999999999999875433 23344444578777643 7889999996554 4555443
No 96
>PLN02275 transferase, transferring glycosyl groups
Probab=96.75 E-value=0.006 Score=38.46 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
.++++|++++|+|+|...... ....+.+-+.|..++ +++++.++|.+++
T Consensus 323 p~~llEAmA~G~PVVa~~~gg----~~eiv~~g~~G~lv~----~~~~la~~i~~l~ 371 (371)
T PLN02275 323 PMKVVDMFGCGLPVCAVSYSC----IGELVKDGKNGLLFS----SSSELADQLLELL 371 (371)
T ss_pred cHHHHHHHHCCCCEEEecCCC----hHHHccCCCCeEEEC----CHHHHHHHHHHhC
Confidence 467999999999999975433 445555566898886 5889999988764
No 97
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.71 E-value=0.00071 Score=41.06 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.++++|++++|+|+|+.....-. ..+. ..|..+... +.+++.+++.++++|++.+..
T Consensus 286 ~~~~~Ea~a~G~pvI~~~~~~~~----e~~~--~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~ 342 (365)
T cd03809 286 GLPVLEAMACGTPVIASNISSLP----EVAG--DAALYFDPL--DPEALAAAIERLLEDPALREE 342 (365)
T ss_pred CCCHHHHhcCCCcEEecCCCCcc----ceec--CceeeeCCC--CHHHHHHHHHHHhcCHHHHHH
Confidence 45789999999999986542211 1111 234455433 789999999999999876543
No 98
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.44 E-value=0.014 Score=36.44 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHH
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 60 (70)
+-+.+.+++|+|+|+.+. ...+..+++.++|+.++ +.+++.+.+.++
T Consensus 251 ~K~~~ymA~G~PVI~~~~----~~~~~~V~~~~~G~~v~----~~~el~~~l~~~ 297 (333)
T PRK09814 251 HKLSLYLAAGLPVIVWSK----AAIADFIVENGLGFVVD----SLEELPEIIDNI 297 (333)
T ss_pred HHHHHHHHCCCCEEECCC----ccHHHHHHhCCceEEeC----CHHHHHHHHHhc
Confidence 347788999999999753 45677888899999997 567888888775
No 99
>PLN00142 sucrose synthase
Probab=96.17 E-value=0.025 Score=39.68 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHH----HhCChhhhhc
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALIT----VLEDPIFQFF 69 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~----~l~~~~~~~~ 69 (70)
.++.||+++|+|+|.....+ ....+.+-..|..+++. +++++.++|.+ ++.|++.+++
T Consensus 681 LvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P~--D~eaLA~aI~~lLekLl~Dp~lr~~ 742 (815)
T PLN00142 681 LTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDPY--HGDEAANKIADFFEKCKEDPSYWNK 742 (815)
T ss_pred HHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 57999999999999976544 23334444568888754 57777777655 4567766543
No 100
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=96.16 E-value=0.025 Score=39.58 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHh----CChhhhh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL----EDPIFQF 68 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l----~~~~~~~ 68 (70)
.+++||+++|+|+|.....+ ....+.+-..|..+++. +++++.++|.+++ .|++.++
T Consensus 658 LvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVdp~--D~eaLA~aL~~ll~kll~dp~~~~ 718 (784)
T TIGR02470 658 LTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHIDPY--HGEEAAEKIVDFFEKCDEDPSYWQ 718 (784)
T ss_pred HHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 57999999999999976544 23344445568888754 5788888888765 5766544
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.99 E-value=0.035 Score=38.32 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
.++++|++++|+|+|.....+ ....+.+-..|+.++.++.+++++.+++.+++.
T Consensus 605 p~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 605 PNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred hHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHh
Confidence 478999999999999986533 233344445788888777666666666666543
No 102
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.93 E-value=0.043 Score=35.84 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=44.7
Q ss_pred HHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeE-ecCCCCCHHHHHHHHHHHhCCh-hhhh
Q psy381 7 SLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVV-LEFDNLNEDNIYDALITVLEDP-IFQF 68 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~-~~~~~~~~~~l~~~i~~~l~~~-~~~~ 68 (70)
+..=|+..|+|++.+++ | +.....+.+.|.... ++.++++.+.|.+.+.++++|. .+++
T Consensus 338 a~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~ 398 (426)
T PRK10017 338 SAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNA 398 (426)
T ss_pred HHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHHH
Confidence 35567788999999997 3 455556688888755 6667888999999999999884 3443
No 103
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=95.90 E-value=0.024 Score=35.86 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
.++.||+++|+|+|..+..+- ...+ ..+.+.... . +.+++.+++.++++++
T Consensus 284 ~~~~EAma~G~PVI~s~~gg~----~e~i-~~~~~~~~~--~-~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 284 IAIVEAASCGLLVVSTRVGGI----PEVL-PPDMILLAE--P-DVESIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHcCCCEEECCCCCc----hhhe-eCCceeecC--C-CHHHHHHHHHHHHhCh
Confidence 589999999999999876432 1222 233343332 2 6889999999988763
No 104
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=95.73 E-value=0.042 Score=33.28 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
..+++||+++|+|+|.....+- ...+.+...|..++ ..+++.+++.++...
T Consensus 258 ~~~~lEAma~G~PvI~~~~~~~----~e~i~~~~~g~l~~----~~~~l~~~l~~l~~~ 308 (335)
T cd03802 258 GLVMIEAMACGTPVIAFRRGAV----PEVVEDGVTGFLVD----SVEELAAAVARADRL 308 (335)
T ss_pred chHHHHHHhcCCCEEEeCCCCc----hhheeCCCcEEEeC----CHHHHHHHHHHHhcc
Confidence 4679999999999998866431 22333333677776 388899999888654
No 105
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=95.65 E-value=0.064 Score=35.61 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCC--CCC----HHHHHHHHHHHhCCh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFD--NLN----EDNIYDALITVLEDP 64 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~--~~~----~~~l~~~i~~~l~~~ 64 (70)
..+++||+++|+|+|....... +...+++-..|..++.. .-+ .+.+.++|.++++++
T Consensus 406 gl~~lEAma~G~PVI~~dv~~G---~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 406 GLTLMEAVGSGLGMIGFDVNYG---NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred cHHHHHHHHhCCCEEEecCCCC---CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChH
Confidence 4689999999999999754211 13344444568777632 112 778999999998544
No 106
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.63 E-value=0.014 Score=35.63 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
.++++|++++|+|+|+....... ..+.. .|..+... +.+.+++.++++|++.+
T Consensus 282 ~~~~~EAma~G~PvI~s~~~~~~----e~~~~--~g~~~~~~----~~l~~~i~~l~~~~~~~ 334 (363)
T cd04955 282 NPSLLEAMAYGCPVLASDNPFNR----EVLGD--KAIYFKVG----DDLASLLEELEADPEEV 334 (363)
T ss_pred ChHHHHHHHcCCCEEEecCCccc----eeecC--CeeEecCc----hHHHHHHHHHHhCHHHH
Confidence 36799999999999987653211 11111 34444422 22889999998886544
No 107
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.59 E-value=0.011 Score=39.44 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
-|.++.+||+.+|+|+| .+ .....+....-|.++. +..+|.+++..+|.+++
T Consensus 439 eg~~~~ieAiS~GiPqI--ny-----g~~~~V~d~~NG~li~----d~~~l~~al~~~L~~~~ 490 (519)
T TIGR03713 439 PDLYTQISGISAGIPQI--NK-----VETDYVEHNKNGYIID----DISELLKALDYYLDNLK 490 (519)
T ss_pred CChHHHHHHHHcCCCee--ec-----CCceeeEcCCCcEEeC----CHHHHHHHHHHHHhCHH
Confidence 35669999999999999 21 1244455555677774 78999999999998873
No 108
>PHA01630 putative group 1 glycosyl transferase
Probab=95.21 E-value=0.072 Score=33.52 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCceeeecCCC--ChHHH---HHHHH-----------HhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 5 LQSLQEAFHYGVKLICIPMFG--DQDLN---AQRIA-----------KIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~--dq~~n---a~~~~-----------~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
..++.||+++|+|+|.....+ |...+ ...+. ..++|..++. +.+++.+.+.+++.|
T Consensus 223 gl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~---~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 223 EIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDP---DIEDAYQKLLEALAN 294 (331)
T ss_pred ChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCC---CHHHHHHHHHHHHhC
Confidence 467999999999999986532 22111 11000 0234555543 466677777777766
No 109
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.19 E-value=0.039 Score=35.85 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHh------CceeEecCCCCCHHHHHHHHHHHhC----Chhhh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI------KTGVVLEFDNLNEDNIYDALITVLE----DPIFQ 67 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~------g~g~~~~~~~~~~~~l~~~i~~~l~----~~~~~ 67 (70)
.+.+||+++|+|.|+-...+ ....+.+. +.|..++.. +++++.++|.+++. +++.+
T Consensus 380 l~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~~--d~~~la~~i~~~l~~~~~~~~~~ 445 (473)
T TIGR02095 380 LTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEEY--DPGALLAALSRALRLYRQDPSLW 445 (473)
T ss_pred HHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHHHHhcCHHHH
Confidence 47899999999999875532 11122222 678887643 68899999988876 66543
No 110
>PLN02501 digalactosyldiacylglycerol synthase
Probab=95.09 E-value=0.048 Score=38.09 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
..++.||+++|+|+|......... +..-+.|... -+.+++.++|.+++.++.
T Consensus 632 GlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGll~----~D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 632 CTATAEALAMGKFVVCADHPSNEF-----FRSFPNCLTY----KTSEDFVAKVKEALANEP 683 (794)
T ss_pred hHHHHHHHHcCCCEEEecCCCCce-----EeecCCeEec----CCHHHHHHHHHHHHhCch
Confidence 367899999999999986644221 2222233322 268999999999998765
No 111
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.07 E-value=0.089 Score=33.20 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
+.++|++++|+|+|..+.. ......+ +..+... +++++.++|.+++.+
T Consensus 293 ~Kl~EylA~G~PVVat~~~-------~~~~~~~-~~~~~~~--d~~~~~~ai~~~l~~ 340 (373)
T cd04950 293 LKLFEYLAAGKPVVATPLP-------EVRRYED-EVVLIAD--DPEEFVAAIEKALLE 340 (373)
T ss_pred chHHHHhccCCCEEecCcH-------HHHhhcC-cEEEeCC--CHHHHHHHHHHHHhc
Confidence 5689999999999987641 1122223 3333322 799999999997544
No 112
>KOG4626|consensus
Probab=95.06 E-value=0.017 Score=39.85 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHhCCceeeecCCCC-hHHHHHHHHHhCceeEec
Q psy381 3 GGLQSLQEAFHYGVKLICIPMFGD-QDLNAQRIAKIKTGVVLE 44 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~~d-q~~na~~~~~~g~g~~~~ 44 (70)
.|..|-++.++.|+|++.+|.-.. ...-+..+...|+|..+-
T Consensus 846 nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 846 NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 378899999999999999997332 234455566678887553
No 113
>PLN02846 digalactosyldiacylglycerol synthase
Probab=95.03 E-value=0.057 Score=35.68 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
.+++.||+++|+|+|...... + ..+.+.+.|...+ +.+++.+++.+++.++
T Consensus 314 g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~~----~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 314 CTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTYD----DGKGFVRATLKALAEE 364 (462)
T ss_pred hHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEecC----CHHHHHHHHHHHHccC
Confidence 367899999999999986433 1 3444445555553 6888888998888753
No 114
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.02 E-value=0.047 Score=35.18 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHH---HhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIA---KIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~---~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
.++.|++++|+|+|.....+.- ...+. ....|.... +++++.++|.+++++++
T Consensus 339 i~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~----d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 339 IGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS----TAEEYAEAIEKILSLSE 394 (419)
T ss_pred cHHHHHHHcCCcEEEEcCCCCc---hheeeccCCCCceEEeC----CHHHHHHHHHHHHhCCH
Confidence 4689999999999987543211 11111 234676653 79999999999998643
No 115
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=94.58 E-value=0.25 Score=31.43 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
||.....||...|+|.|.+ +..+-...-+.+.+.|.-...+ +++++.+.+.+.+.
T Consensus 255 ~ggTMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~~----~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 255 GGGTMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHST----DPDEIVEYVRKNLG 309 (335)
T ss_pred CCcHHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEecC----CHHHHHHHHHHhhh
Confidence 5667789999999999986 2223223446677777643333 67777776665543
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=94.47 E-value=0.086 Score=33.95 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHH
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDAL 57 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i 57 (70)
..+++||+++|+|+|.....+ ...+.+.+.|..++.+ +.++|.+.+
T Consensus 320 p~vilEAmA~G~PVVat~~gG-----~~Eiv~~~~G~lv~~~--d~~~La~~~ 365 (405)
T PRK10125 320 PLILCEALSIGVPVIATHSDA-----AREVLQKSGGKTVSEE--EVLQLAQLS 365 (405)
T ss_pred cCHHHHHHHcCCCEEEeCCCC-----hHHhEeCCcEEEECCC--CHHHHHhcc
Confidence 467999999999999998755 1223334578888755 456666543
No 117
>PLN02949 transferase, transferring glycosyl groups
Probab=94.04 E-value=0.052 Score=35.71 Aligned_cols=54 Identities=24% Similarity=0.212 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCceeeecCCC---ChHHHHHHHHHhC-ceeEecCCCCCHHHHHHHHHHHhCC-hhhh
Q psy381 6 QSLQEAFHYGVKLICIPMFG---DQDLNAQRIAKIK-TGVVLEFDNLNEDNIYDALITVLED-PIFQ 67 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~---dq~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l~~-~~~~ 67 (70)
.++.||+++|+|+|.....+ |..... ..| .|...+ +.+++.++|.+++++ ++.+
T Consensus 369 ivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~~----~~~~la~ai~~ll~~~~~~r 427 (463)
T PLN02949 369 ISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLAT----TVEEYADAILEVLRMRETER 427 (463)
T ss_pred hHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccCC----CHHHHHHHHHHHHhCCHHHH
Confidence 46899999999999986532 111100 002 343332 789999999999874 4444
No 118
>PRK00654 glgA glycogen synthase; Provisional
Probab=93.80 E-value=0.068 Score=34.83 Aligned_cols=55 Identities=25% Similarity=0.236 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCceeeecCCC--ChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 6 QSLQEAFHYGVKLICIPMFG--DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~--dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
.+.+||+++|+|.|+....+ |...+.....+.+.|..++.. +++++.+++.+++.
T Consensus 371 l~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~--d~~~la~~i~~~l~ 427 (466)
T PRK00654 371 LTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF--NAEDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHH
Confidence 57899999999999865422 211111000123678888743 68889999988765
No 119
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.72 E-value=0.29 Score=33.62 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCceeee-cCCCChHHHHHHHHHh-----C-----ceeEe----c--CCCCCHHHHHHHHHHHhCChhhhh
Q psy381 6 QSLQEAFHYGVKLICI-PMFGDQDLNAQRIAKI-----K-----TGVVL----E--FDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~-----g-----~g~~~----~--~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
..++|+...|+|++++ -...=-..-++++.+. + ++..+ - .++.+++++.+++ +++.|+++++
T Consensus 498 TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~ 576 (608)
T PRK01021 498 TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKE 576 (608)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHH
Confidence 3478999999999997 2222123445665551 1 12211 1 3467899999987 8888877665
Q ss_pred c
Q psy381 69 F 69 (70)
Q Consensus 69 ~ 69 (70)
+
T Consensus 577 ~ 577 (608)
T PRK01021 577 K 577 (608)
T ss_pred H
Confidence 4
No 120
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=93.71 E-value=0.14 Score=33.20 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=40.7
Q ss_pred HHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 8 LQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 8 ~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
.-||...|+|++.+=...+++. ..+.|.-+.+. .+.+.+.+++.+++++++..++
T Consensus 293 qEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg---~~~~~i~~~~~~ll~~~~~~~~ 347 (383)
T COG0381 293 QEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVG---TDEENILDAATELLEDEEFYER 347 (383)
T ss_pred hhhHHhcCCcEEeeccCCCCcc----ceecCceEEeC---ccHHHHHHHHHHHhhChHHHHH
Confidence 5799999999999977777665 22334444443 3679999999999999877664
No 121
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=93.65 E-value=0.052 Score=35.08 Aligned_cols=55 Identities=27% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCceeeecCCC--ChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 6 QSLQEAFHYGVKLICIPMFG--DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~--dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
.+.+||+++|+|+|+....+ |-..+.....+.|.|..++.. +++++.+++.+++.
T Consensus 385 l~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~--~~~~l~~~i~~~l~ 441 (476)
T cd03791 385 LTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALA 441 (476)
T ss_pred HHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC--CHHHHHHHHHHHHH
Confidence 46899999999999865532 111111111134578888743 58899999988764
No 122
>PRK14099 glycogen synthase; Provisional
Probab=93.25 E-value=0.15 Score=33.73 Aligned_cols=61 Identities=23% Similarity=0.277 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCceeeecCCC--ChHHHHHH-HHH--hCceeEecCCCCCHHHHHHHHHH---HhCChhhhh
Q psy381 6 QSLQEAFHYGVKLICIPMFG--DQDLNAQR-IAK--IKTGVVLEFDNLNEDNIYDALIT---VLEDPIFQF 68 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~--dq~~na~~-~~~--~g~g~~~~~~~~~~~~l~~~i~~---~l~~~~~~~ 68 (70)
.+.+||+++|+|.|+....+ |-...... .+. .+.|..++.. +++++.+++.+ +++|++.++
T Consensus 384 l~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~--d~~~La~ai~~a~~l~~d~~~~~ 452 (485)
T PRK14099 384 LTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV--TADALAAALRKTAALFADPVAWR 452 (485)
T ss_pred HHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC--CHHHHHHHHHHHHHHhcCHHHHH
Confidence 46899999998766654322 21111100 011 1468887744 68999999986 666765544
No 123
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=93.21 E-value=0.45 Score=30.76 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCceeee-cCCCChHHHHHHHHHhCc--------eeE-e---cCCCCCHHHHHHHHHHHhCChhhh
Q psy381 6 QSLQEAFHYGVKLICI-PMFGDQDLNAQRIAKIKT--------GVV-L---EFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~g~--------g~~-~---~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
..++|+...|+|++++ -...=-..-++++.+... +.. + -.++.+++.+.+.+.+++.|++.+
T Consensus 270 TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~ 344 (373)
T PF02684_consen 270 TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKR 344 (373)
T ss_pred HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHH
Confidence 4579999999999998 222223456666655321 111 1 126789999999999999998654
No 124
>KOG0853|consensus
Probab=93.08 E-value=0.047 Score=36.41 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=39.5
Q ss_pred HHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 7 SLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
+..||+++|+|++..-..+- +..++..-.|...+++.-....+.+++.++..|++++.+
T Consensus 381 v~IEAMa~glPvvAt~~GGP----~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~ 439 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGGP----AEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWAR 439 (495)
T ss_pred eeHHHHhcCCCEEEecCCCc----eEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 57999999999999854321 222333335666665322233699999999999988654
No 125
>PHA01633 putative glycosyl transferase group 1
Probab=93.01 E-value=0.32 Score=30.92 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCceeeecC------CCCh------HHHHHHHH--HhCceeEecCCCCCHHHHHHHHHHHh
Q psy381 5 LQSLQEAFHYGVKLICIPM------FGDQ------DLNAQRIA--KIKTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~------~~dq------~~na~~~~--~~g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
..+++||+++|+|+|.-.. .+++ ..+..... +.|.|..++ ..+++++..+|.+++
T Consensus 237 GlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~--~~d~~~la~ai~~~~ 305 (335)
T PHA01633 237 GMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIH--KFQIEDMANAIILAF 305 (335)
T ss_pred CHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeec--CCCHHHHHHHHHHHH
Confidence 3678999999999998632 1221 11222222 246676665 458999999999884
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.32 Score=33.28 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHhCCceeeecCCCChHH--HHHHHHH-hCceeEe
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMFGDQDL--NAQRIAK-IKTGVVL 43 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~~dq~~--na~~~~~-~g~g~~~ 43 (70)
.||+.|..|++..|+|+|..+ ++|+. |+..+.. .|+-..+
T Consensus 518 Y~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 518 YGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred CCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 478999999999999999996 77753 4444443 5664444
No 127
>PRK14098 glycogen synthase; Provisional
Probab=92.10 E-value=0.21 Score=33.07 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCceeeecCCC--ChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHh
Q psy381 6 QSLQEAFHYGVKLICIPMFG--DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~--dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
.+.+||+++|+|.|+....+ |...+ ...+.+.|..++.. +++++.++|.+++
T Consensus 396 l~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~~--d~~~la~ai~~~l 449 (489)
T PRK14098 396 MLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHDY--TPEALVAKLGEAL 449 (489)
T ss_pred HHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeCCC--CHHHHHHHHHHHH
Confidence 46899999999888775422 11100 00113567777643 6889999988754
No 128
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.79 E-value=1.2 Score=26.12 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
.++.|++++|+|+|..+... ....+.+.+.|..+... +.+.+..++..++++++
T Consensus 291 ~~~~Ea~a~g~pvi~~~~~~----~~e~~~~~~~g~~~~~~--~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 291 LVLLEAMAAGTPVIASDVGG----IPEVVEDGETGLLVPPG--DVEELADALEQLLEDPE 344 (381)
T ss_pred HHHHHHHhcCCcEEECCCCC----hHHHhcCCCceEecCCC--CHHHHHHHHHHHhcCHH
Confidence 34799999999998876532 12222222245533322 68899999999988763
No 129
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=90.67 E-value=0.75 Score=30.37 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCc----eeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 6 QSLQEAFHYGVK----LICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 6 ~t~~e~l~~g~P----~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
.++.|++++|+| +|+--..+-.. .+ +-|+.+++. +++.+.++|.++++.+
T Consensus 370 Lv~lEamA~g~P~~g~vVlS~~~G~~~----~l---~~gllVnP~--d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 370 LVAKEYVAAQDPKDGVLILSEFAGAAQ----EL---NGALLVNPY--DIDGMADAIARALTMP 423 (456)
T ss_pred ccHHHHHHhcCCCCceEEEeCCCCChH----Hh---CCcEEECCC--CHHHHHHHHHHHHcCC
Confidence 578999999999 66655433211 12 257777654 6899999999998753
No 130
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=90.59 E-value=0.5 Score=30.02 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=32.4
Q ss_pred HHH-HHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 7 SLQ-EAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 7 t~~-e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
++. |+.++|+|+|.+=...+.+ .....|..+.+. .+++++.+++++++.++.
T Consensus 268 GI~eEa~~lg~P~v~iR~~geRq----e~r~~~~nvlv~---~~~~~I~~ai~~~l~~~~ 320 (346)
T PF02350_consen 268 GIQEEAPSLGKPVVNIRDSGERQ----EGRERGSNVLVG---TDPEAIIQAIEKALSDKD 320 (346)
T ss_dssp HHHHHGGGGT--EEECSSS-S-H----HHHHTTSEEEET---SSHHHHHHHHHHHHH-HH
T ss_pred cHHHHHHHhCCeEEEecCCCCCH----HHHhhcceEEeC---CCHHHHHHHHHHHHhChH
Confidence 577 9999999999993222221 122345555543 489999999999998733
No 131
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.34 E-value=1.2 Score=28.80 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=37.5
Q ss_pred HHHHhCCceeeecCCCChHH--HHHHHHH-hCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 10 EAFHYGVKLICIPMFGDQDL--NAQRIAK-IKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 10 e~l~~g~P~l~~P~~~dq~~--na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.++-.|+|+|.+|-.+-|+. .|++=.+ +|+.+.+... ....-..+.++++.|+.+.+
T Consensus 325 QavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~--~aq~a~~~~q~ll~dp~r~~ 384 (412)
T COG4370 325 QAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP--EAQAAAQAVQELLGDPQRLT 384 (412)
T ss_pred HhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC--chhhHHHHHHHHhcChHHHH
Confidence 34667999999999888864 4555444 6888877642 23333334445888876654
No 132
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=89.71 E-value=1.3 Score=30.42 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCC
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFD 46 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~ 46 (70)
.++++|++++|+|+|...... +...+.+-..|..++..
T Consensus 486 p~vlLEAMA~GlPVVATdvGG----~~EiV~dG~nG~LVp~~ 523 (578)
T PRK15490 486 PNVLIEAQMVGVPVISTPAGG----SAECFIEGVSGFILDDA 523 (578)
T ss_pred cHHHHHHHHhCCCEEEeCCCC----cHHHcccCCcEEEECCC
Confidence 478999999999999886533 23444455678887754
No 133
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.53 E-value=0.88 Score=30.01 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
..++.||+.+|+|++..=..... ...+.. |-.++.+ +.+++.++|.+++.+++
T Consensus 361 ~~al~eA~~~G~pI~afd~t~~~---~~~i~~---g~l~~~~--~~~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 361 LNAVRRAFEYNLLILGFEETAHN---RDFIAS---ENIFEHN--EVDQLISKLKDLLNDPN 413 (438)
T ss_pred HHHHHHHHHcCCcEEEEecccCC---cccccC---CceecCC--CHHHHHHHHHHHhcCHH
Confidence 57899999999999987443221 122222 5455533 68999999999998874
No 134
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=88.93 E-value=1.8 Score=29.85 Aligned_cols=57 Identities=9% Similarity=-0.007 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHh--CceeEecCCC-----CCHHHHHHHHHHHhCC
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI--KTGVVLEFDN-----LNEDNIYDALITVLED 63 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~--g~g~~~~~~~-----~~~~~l~~~i~~~l~~ 63 (70)
.++.||+++|+|+|......= ......+... ..|+.+...+ .+.+.|.+++.+++..
T Consensus 489 ~~~lEAma~G~PvI~t~~~gf-~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~ 552 (590)
T cd03793 489 YTPAECTVMGIPSITTNLSGF-GCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL 552 (590)
T ss_pred cHHHHHHHcCCCEEEccCcch-hhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC
Confidence 578999999999999876321 0111112221 2466554211 1345677777777643
No 135
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.29 E-value=0.7 Score=30.35 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCc----eeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 6 QSLQEAFHYGVK----LICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 6 ~t~~e~l~~g~P----~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
.+++|++++|+| +|+--..+-... ..-|..+++. +.+++.++|.+++.++
T Consensus 375 lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~lv~p~--d~~~la~ai~~~l~~~ 428 (460)
T cd03788 375 LVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGALLVNPY--DIDEVADAIHRALTMP 428 (460)
T ss_pred cccceeEEEecCCCceEEEeccccchhh-------cCCCEEECCC--CHHHHHHHHHHHHcCC
Confidence 567899999999 444332221111 2346677644 6899999999999865
No 136
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.28 E-value=0.68 Score=26.05 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCceeeecCCC
Q psy381 5 LQSLQEAFHYGVKLICIPMFG 25 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~ 25 (70)
.++++|++++|+|+|..+...
T Consensus 195 ~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 195 GLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred ChHHHHHHhCCCCEEEcCCCC
Confidence 478999999999999987643
No 137
>PLN02939 transferase, transferring glycosyl groups
Probab=86.89 E-value=1.6 Score=31.70 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCceeeecCCC--ChHHH--HHHH-HHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 6 QSLQEAFHYGVKLICIPMFG--DQDLN--AQRI-AKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~--dq~~n--a~~~-~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
.+.+||+++|+|.|+....+ |-..+ ...+ ..-+.|..++.. +++.|..+|.+++.
T Consensus 871 LvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~--D~eaLa~AL~rAL~ 930 (977)
T PLN02939 871 LTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTP--DEQGLNSALERAFN 930 (977)
T ss_pred HHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCC--CHHHHHHHHHHHHH
Confidence 46899999999999876533 21111 1111 113567777643 68888888877653
No 138
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=86.19 E-value=1.1 Score=28.54 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeE-ecCCCCCHHHHHHHHHHHhC
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVV-LEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~-~~~~~~~~~~l~~~i~~~l~ 62 (70)
+.+.||.+.|+|+|.+= +.+ ...+.|..+. + ..++++|.+++.++++
T Consensus 291 ggi~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~v---g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 291 SGIIEAPSFGVPTINIG---TRQ----KGRLRADSVIDV---DPDKEEIVKAIEKLLD 338 (365)
T ss_pred hHHHhhhhcCCCEEeec---CCc----hhhhhcCeEEEe---CCCHHHHHHHHHHHhC
Confidence 45699999999999772 211 1113343333 3 2368999999998654
No 139
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=84.28 E-value=3 Score=29.62 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCc---eeeecCCCChHHHHHHHHHhC-ceeEecCCCCCHHHHHHHHHHHhC-Chhhh
Q psy381 6 QSLQEAFHYGVK---LICIPMFGDQDLNAQRIAKIK-TGVVLEFDNLNEDNIYDALITVLE-DPIFQ 67 (70)
Q Consensus 6 ~t~~e~l~~g~P---~l~~P~~~dq~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l~-~~~~~ 67 (70)
.+.+|++++|+| +++++-+.-- +. ..| .|+.+++. +.+.+.++|.+++. +++.+
T Consensus 390 Lv~lEamA~g~p~~gvlVlSe~~G~---~~---~l~~~allVnP~--D~~~lA~AI~~aL~m~~~er 448 (797)
T PLN03063 390 LVSYEFVACQKAKKGVLVLSEFAGA---GQ---SLGAGALLVNPW--NITEVSSAIKEALNMSDEER 448 (797)
T ss_pred cchhhHheeecCCCCCEEeeCCcCc---hh---hhcCCeEEECCC--CHHHHHHHHHHHHhCCHHHH
Confidence 467899999999 4555432211 11 133 57777754 68999999999988 44443
No 140
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=83.97 E-value=6.4 Score=22.93 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=26.7
Q ss_pred HHHHhCCceeeecCC----CChHHHHHHHHHhCceeEec
Q psy381 10 EAFHYGVKLICIPMF----GDQDLNAQRIAKIKTGVVLE 44 (70)
Q Consensus 10 e~l~~g~P~l~~P~~----~dq~~na~~~~~~g~g~~~~ 44 (70)
.++..++|++++|.. .-+..|...+.+.|+-++-+
T Consensus 107 ~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P 145 (181)
T TIGR00421 107 VCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPP 145 (181)
T ss_pred HHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECC
Confidence 467899999999962 22467888999988876543
No 141
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.69 E-value=7.7 Score=25.27 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=43.8
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
|.|+++-.+..|+|+.+-- +..--..+.+.|+-+....++++...+.++=+++..
T Consensus 278 giGnI~lLl~~G~~v~L~~----~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 278 GIGNICLLLQLGKKVFLSR----DNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred hHhHHHHHHHcCCeEEEec----CChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhh
Confidence 6789999999999998752 233356677788888888889999999998887753
No 142
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=79.85 E-value=15 Score=24.26 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHHHHHhCce-eEecCCCCCHHHHHHHHHHHhCC
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTG-VVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g-~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
.++.=+++.|+|.|.+-+ |..+...+++.|+- ..++..+++.+.+.+.+.+.+.+
T Consensus 295 HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 295 HSAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTK 350 (385)
T ss_pred HHHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhc
Confidence 345667889999999965 34445777777774 44566677888888888777554
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=79.42 E-value=4.7 Score=25.47 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCceeeecCCCChHH---HHHHHHHhCceeEecC
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDL---NAQRIAKIKTGVVLEF 45 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~---na~~~~~~g~g~~~~~ 45 (70)
.+.++||++.|+|+.++|...-... -...+.+.|.-..+..
T Consensus 239 vSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~ 282 (311)
T PF06258_consen 239 VSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTG 282 (311)
T ss_pred HHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCC
Confidence 4778999999999999988652222 3344556677666643
No 144
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=78.58 E-value=3 Score=18.87 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHhCChhhhhcC
Q psy381 49 NEDNIYDALITVLEDPIFQFFL 70 (70)
Q Consensus 49 ~~~~l~~~i~~~l~~~~~~~~l 70 (70)
+.+.+...+.++-.|+.+++++
T Consensus 2 S~~~l~~Fl~~~~~d~~l~~~l 23 (49)
T PF07862_consen 2 SIESLKAFLEKVKSDPELREQL 23 (49)
T ss_pred CHHHHHHHHHHHhcCHHHHHHH
Confidence 5667777888888888887653
No 145
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.94 E-value=13 Score=24.12 Aligned_cols=56 Identities=16% Similarity=0.010 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHhCCceeee-cCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 3 GGLQSLQEAFHYGVKLICI-PMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
+|...-.||...|+|.|.+ |- .-..--+++.+.|.=.... ++.++.+.+.+.+.++
T Consensus 259 ~ggTMarEaAlLGtpaIs~~pG--kll~vdk~lie~G~~~~s~----~~~~~~~~a~~~l~~~ 315 (346)
T COG1817 259 AGGTMAREAALLGTPAISCYPG--KLLAVDKYLIEKGLLYHST----DEIAIVEYAVRNLKYR 315 (346)
T ss_pred CCchHHHHHHHhCCceEEecCC--ccccccHHHHhcCceeecC----CHHHHHHHHHHHhhch
Confidence 4555568999999999998 32 1222334455555443332 3445444555555444
No 146
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.30 E-value=12 Score=23.25 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=15.9
Q ss_pred CCcHHHHHHHHH------hCCceeeecC
Q psy381 2 QGGLQSLQEAFH------YGVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~------~g~P~l~~P~ 23 (70)
-||-||++.++. .++|++.+..
T Consensus 42 iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 42 VGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred ECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 378888888864 4778887754
No 147
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=73.60 E-value=13 Score=23.08 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=34.9
Q ss_pred CCceeeecCCCChHHHHHHHHHhCceeEecC--------CCCCHHHHHHHHHHH
Q psy381 15 GVKLICIPMFGDQDLNAQRIAKIKTGVVLEF--------DNLNEDNIYDALITV 60 (70)
Q Consensus 15 g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~--------~~~~~~~l~~~i~~~ 60 (70)
.--+.++|+..|-..-|+++++.|+..+++. +-.++..|.-.+.+.
T Consensus 128 ~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a 181 (262)
T COG2022 128 KEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA 181 (262)
T ss_pred hCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhC
Confidence 4456788999999999999999999988864 234677776555544
No 148
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=73.54 E-value=17 Score=23.88 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=35.6
Q ss_pred HHHhCCceeeecCCC----C---hHHHHHHHHHhCceeEecC------------CCCCHHHHHHHHHHHhC
Q psy381 11 AFHYGVKLICIPMFG----D---QDLNAQRIAKIKTGVVLEF------------DNLNEDNIYDALITVLE 62 (70)
Q Consensus 11 ~l~~g~P~l~~P~~~----d---q~~na~~~~~~g~g~~~~~------------~~~~~~~l~~~i~~~l~ 62 (70)
+++.++|++++|-.. + -..|...+.+.|+-++-+. .-.+++++...+.+.+.
T Consensus 112 ~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 112 LLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred HHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 455699999999532 2 3568888888887654331 22468888888887764
No 149
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=72.41 E-value=17 Score=21.44 Aligned_cols=52 Identities=10% Similarity=-0.041 Sum_probs=33.8
Q ss_pred HhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 13 HYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 13 ~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
....|+|++-...+.......+.+.|+.-.+. ++.+.+.|.++|+.++....
T Consensus 66 ~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~-K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 66 FPRMRRLVIADDDIEARLIGSLSPSPLDGVLS-KASTLEILQQELFLSLNGVR 117 (207)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEe-cCCCHHHHHHHHHHHHCCCc
Confidence 34678888865444444444454667644454 35588999999999987644
No 150
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=72.36 E-value=22 Score=24.12 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCceeee-----cCCCChHHHHHHHHH-hCceeE-ecCCCCCHHHHHHHHHHHhCC
Q psy381 6 QSLQEAFHYGVKLICI-----PMFGDQDLNAQRIAK-IKTGVV-LEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~-----P~~~dq~~na~~~~~-~g~g~~-~~~~~~~~~~l~~~i~~~l~~ 63 (70)
.++.|.-..|+|++++ |+..+-..-+..+++ +++-+. ++-.+++.+++...++++|-.
T Consensus 171 rvI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 171 RVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYE 235 (492)
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhc
Confidence 4577888889999987 433333444555555 788754 555678899999999988743
No 151
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=71.68 E-value=14 Score=22.89 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=30.4
Q ss_pred CCceeeecCCCChHHHHHHHHHhCceeEecCC--------CCCHHHHHHHHHHH
Q psy381 15 GVKLICIPMFGDQDLNAQRIAKIKTGVVLEFD--------NLNEDNIYDALITV 60 (70)
Q Consensus 15 g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~--------~~~~~~l~~~i~~~ 60 (70)
..-+.++|+..|-..-|+++++.|+..+++.. -.++..|...+.+.
T Consensus 121 ~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~ 174 (247)
T PF05690_consen 121 KEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERA 174 (247)
T ss_dssp HTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHG
T ss_pred HCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhc
Confidence 34467889999999999999999999887642 24566666555444
No 152
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=71.64 E-value=5.8 Score=22.91 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=18.1
Q ss_pred HHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 30 NAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 30 na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
.+.+=++.|+|+.+ +++++.++|.+.++
T Consensus 104 ~~~Fe~~cGVGV~V-----T~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 104 VAEFEKACGVGVVV-----TPEQIEAAVEKYIE 131 (164)
T ss_dssp HHHHHHTTTTT---------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEE-----CHHHHHHHHHHHHH
Confidence 34444447999888 68999999998875
No 153
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.58 E-value=19 Score=22.87 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHh----CCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFHY----GVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~~----g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||-||++.+... ++|++.+.... +|... +.+++++.+++.+++++
T Consensus 80 GGDGT~L~aar~~~~~~~PilGIN~G~-------------lGFL~---~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 80 GGDGTILRAAELARAADVPVLGVNLGH-------------VGFLA---EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cCCHHHHHHHHHhccCCCcEEEEecCC-------------Cceec---cCCHHHHHHHHHHHHcC
Confidence 566666666442 56766665411 22222 33577777888877765
No 154
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=71.42 E-value=20 Score=21.63 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=35.3
Q ss_pred HHHHHHhCCceeeecCCC----Ch---HHHHHHHHHhCceeEecC-----------C-CCCHHHHHHHHHHHhCC
Q psy381 8 LQEAFHYGVKLICIPMFG----DQ---DLNAQRIAKIKTGVVLEF-----------D-NLNEDNIYDALITVLED 63 (70)
Q Consensus 8 ~~e~l~~g~P~l~~P~~~----dq---~~na~~~~~~g~g~~~~~-----------~-~~~~~~l~~~i~~~l~~ 63 (70)
++.+.-.++|++++|.+. ++ ..|.+.+.+.|+-++-+. + -.++++|...+.+.+..
T Consensus 125 ~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~lAcg~~G~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 125 IVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYGNGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred HHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCcccCCCcCCCCCCCHHHHHHHHHHHHhh
Confidence 444444589999999733 22 356777777776543221 1 14678888888877754
No 155
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=70.98 E-value=9.1 Score=21.58 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHh
Q psy381 49 NEDNIYDALITVL 61 (70)
Q Consensus 49 ~~~~l~~~i~~~l 61 (70)
+++.+.+.++-++
T Consensus 128 t~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 128 TPEQVVEILRYVL 140 (141)
T ss_pred CHHHHHHHHHHHh
Confidence 5666666655543
No 156
>PRK05920 aromatic acid decarboxylase; Validated
Probab=70.76 E-value=12 Score=22.34 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHHHhCCceeeecC-CCCh---HHHHHHHHHhCceeEe
Q psy381 10 EAFHYGVKLICIPM-FGDQ---DLNAQRIAKIKTGVVL 43 (70)
Q Consensus 10 e~l~~g~P~l~~P~-~~dq---~~na~~~~~~g~g~~~ 43 (70)
+++..+.|++++|. .... ..|...+.+.|+-++-
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~ 162 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIILP 162 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeC
Confidence 56889999999997 3333 5788888888877543
No 157
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=70.30 E-value=19 Score=20.98 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=32.6
Q ss_pred CCceeeecCCC----C---hHHHHHHHHHhCceeEecC------------CCCCHHHHHHHHHHHhC
Q psy381 15 GVKLICIPMFG----D---QDLNAQRIAKIKTGVVLEF------------DNLNEDNIYDALITVLE 62 (70)
Q Consensus 15 g~P~l~~P~~~----d---q~~na~~~~~~g~g~~~~~------------~~~~~~~l~~~i~~~l~ 62 (70)
++|++++|... . ...|...+.+.|+-++-+. .-.+.+++.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 89999999632 2 2578888888886654432 12357788877777653
No 158
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.03 E-value=16 Score=23.17 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHh----CCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFHY----GVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~~----g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||=||++.+... ++|++.+-... +|-. .+.+++++.+++.+++++
T Consensus 76 GGDGTlL~aar~~~~~~iPilGIN~G~-------------lGFL---t~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 76 GGDGTVLSAARQLAPCGIPLLTINTGH-------------LGFL---TEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred eCcHHHHHHHHHhcCCCCcEEEEeCCC-------------Cccc---ccCCHHHHHHHHHHHHcC
Confidence 666777776553 66777764311 1211 233567777777777654
No 159
>PLN02316 synthase/transferase
Probab=69.66 E-value=19 Score=26.72 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCceeeecCCC--ChHHHH----HHHHH---hCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 6 QSLQEAFHYGVKLICIPMFG--DQDLNA----QRIAK---IKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~--dq~~na----~~~~~---~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
.+.+||+++|+|.|+-...+ |..... ...+. .+.|..++.. +++.|..+|.+++.+
T Consensus 934 LvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~--d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 934 LTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGA--DAAGVDYALNRAISA 998 (1036)
T ss_pred HHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCC--CHHHHHHHHHHHHhh
Confidence 46899999999888765532 111110 00011 2467777643 688888888888764
No 160
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.37 E-value=12 Score=23.24 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=14.4
Q ss_pred CcHHHHHHHHH---hCCceeeecC
Q psy381 3 GGLQSLQEAFH---YGVKLICIPM 23 (70)
Q Consensus 3 gG~~t~~e~l~---~g~P~l~~P~ 23 (70)
||-||+++++. .++|++.+|.
T Consensus 65 GGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 65 GGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred eCcHHHHHHHHhcCCCCeEEEEeC
Confidence 67778877763 3567777775
No 161
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=69.00 E-value=5.7 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=16.3
Q ss_pred CcHHHH---HHHHHhCCceeeecC
Q psy381 3 GGLQSL---QEAFHYGVKLICIPM 23 (70)
Q Consensus 3 gG~~t~---~e~l~~g~P~l~~P~ 23 (70)
||.||+ .|++.+++|+++++.
T Consensus 100 GG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 100 GGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CchhHHHHHHHHHHcCCCEEEEEC
Confidence 566666 556788999999975
No 162
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=68.50 E-value=17 Score=23.92 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=37.0
Q ss_pred HHHHHHHhCCceeeecCC-CChHHHHHHHHHhC--------ceeE-ec---CCCCCHHHHHHHHHHHhCCh
Q psy381 7 SLQEAFHYGVKLICIPMF-GDQDLNAQRIAKIK--------TGVV-LE---FDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~-~dq~~na~~~~~~g--------~g~~-~~---~~~~~~~~l~~~i~~~l~~~ 64 (70)
.++|+..+|+||++.=-. .==+.-++++.... ++.. ++ .++++++.|.+++..++.|+
T Consensus 275 ~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 275 ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNG 345 (381)
T ss_pred HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcCh
Confidence 478999999999986211 11123455544432 1211 11 25678999999999999887
No 163
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=67.03 E-value=20 Score=20.88 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCceeeecCC
Q psy381 6 QSLQEAFHYGVKLICIPMF 24 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~ 24 (70)
+++.+++..++|.+++|..
T Consensus 106 ~~~~~~lk~~~pvvi~P~m 124 (174)
T TIGR02699 106 NAVIQAAKAKVPVYIMPSD 124 (174)
T ss_pred HHHHHHhccCCCEEEEECc
Confidence 4456667789999999973
No 164
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=66.89 E-value=21 Score=21.49 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.6
Q ss_pred eeecC----CCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 19 ICIPM----FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 19 l~~P~----~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
|.+|. +.+.+.+..++.++|+.+++... -+.+-+..-++...++
T Consensus 2 IGIPraL~~y~~~p~W~~FF~~LG~~Vv~S~~-T~k~i~~~G~~~~~~e 49 (221)
T PF09989_consen 2 IGIPRALNYYEYYPFWQTFFTELGFEVVLSPP-TNKEILDKGVKSAPSE 49 (221)
T ss_pred eecchhHhhhhhhHHHHHHHHHcCCEEEECCC-CcHHHHHHHhhhCCCC
Confidence 45564 46678899999999999988743 2556666666555544
No 165
>PF14350 Beta_protein: Beta protein
Probab=66.53 E-value=10 Score=24.07 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=25.5
Q ss_pred ceeeecCCCChHHHHHHHH---HhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 17 KLICIPMFGDQDLNAQRIA---KIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 17 P~l~~P~~~dq~~na~~~~---~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
|++..-...+.......+. ..|++++++..++..+.+...|..++.
T Consensus 99 PVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~~ 147 (347)
T PF14350_consen 99 PVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRILA 147 (347)
T ss_pred EEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHHH
Confidence 5555433333333334344 356788887776655566666666654
No 166
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.36 E-value=19 Score=22.64 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHhCC
Q psy381 47 NLNEDNIYDALITVLED 63 (70)
Q Consensus 47 ~~~~~~l~~~i~~~l~~ 63 (70)
+.+++++.+++.+++++
T Consensus 104 ~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 104 TVSKEEIEETIDELLNG 120 (292)
T ss_pred ccCHHHHHHHHHHHHcC
Confidence 34577788888887765
No 167
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=66.12 E-value=26 Score=21.03 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=30.2
Q ss_pred cHHHHHHHHHhCCceeeecCCCC--hHHHHHHHHHhCceeEecCCCCCHHHHHH
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGD--QDLNAQRIAKIKTGVVLEFDNLNEDNIYD 55 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~d--q~~na~~~~~~g~g~~~~~~~~~~~~l~~ 55 (70)
-..+...++..|+|+.++|-..+ +..=...+-+.|+. .+. +.+++.+
T Consensus 170 tl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~-~i~----~~~d~~~ 218 (220)
T TIGR00732 170 ALITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAA-LIT----SAKDILE 218 (220)
T ss_pred hHHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCE-EEC----CHHHHHH
Confidence 35777888999999999986433 33334455566864 443 4555543
No 168
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=65.94 E-value=2.3 Score=26.83 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCceeeecCCCChHHHHHH----HHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 6 QSLQEAFHYGVKLICIPMFGDQDLNAQR----IAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~~dq~~na~~----~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
+.+.|.+..++|+|......|.+...+- ..+..-|..+. +.++|.++|.+++.++
T Consensus 279 Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~~~~~~ 337 (369)
T PF04464_consen 279 SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIENIIENP 337 (369)
T ss_dssp THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHTTHHHHH
T ss_pred hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC----CHHHHHHHHHhhhhCC
Confidence 4678999999999998765554422110 12233344444 6889999998877654
No 169
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=64.68 E-value=26 Score=20.37 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=31.5
Q ss_pred HHHHHHhCCceeeecCCC----C---hHHHHHHHHHhCceeEecCC------------CCCHHHHHHHHHH
Q psy381 8 LQEAFHYGVKLICIPMFG----D---QDLNAQRIAKIKTGVVLEFD------------NLNEDNIYDALIT 59 (70)
Q Consensus 8 ~~e~l~~g~P~l~~P~~~----d---q~~na~~~~~~g~g~~~~~~------------~~~~~~l~~~i~~ 59 (70)
+..++-.++|++++|-.. + -..|...+.+.|+-++-+.. -.+++++...+.+
T Consensus 105 ~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~g~~g~g~~~~~~~i~~~~~~ 175 (177)
T TIGR02113 105 VALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACGDYGRGALADLDDILQTIKE 175 (177)
T ss_pred HHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccCCCccccCCCCHHHHHHHHHH
Confidence 334433489999999532 2 24688888888875543321 1356666666544
No 170
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=64.49 E-value=1.4 Score=17.57 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=11.8
Q ss_pred cHHHHHHHHHhCCceee
Q psy381 4 GLQSLQEAFHYGVKLIC 20 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~ 20 (70)
|-|+++..++.+.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56778888888877654
No 171
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.39 E-value=29 Score=21.56 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHh-----CCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFHY-----GVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~~-----g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||-||++.++.. .+|++.+...+ .+|-. .+.+++++.+.+.+++++
T Consensus 47 GGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL---~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 47 GGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFY---CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred CCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEc---ccCCHHHHHHHHHHHHcC
Confidence 677777777653 45655554301 12221 244677888888877754
No 172
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=62.87 E-value=39 Score=21.85 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHH
Q psy381 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 60 (70)
|.||++-.+..|+|+.+-.-. .-=..+.+.|+-+..+.+.++...+.++=+++
T Consensus 239 giGnl~lLi~~G~~v~l~r~n----~fwqdl~e~gv~Vlf~~d~L~~~~v~e~~rql 291 (322)
T PRK02797 239 GIGTLCLLIQLGKPVVLSRDN----PFWQDLTEQGLPVLFTGDDLDEDIVREAQRQL 291 (322)
T ss_pred HHhHHHHHHHCCCcEEEecCC----chHHHHHhCCCeEEecCCcccHHHHHHHHHHH
Confidence 678999999999999986321 11233667788877777888888887775554
No 173
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.85 E-value=28 Score=21.87 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHhCC
Q psy381 47 NLNEDNIYDALITVLED 63 (70)
Q Consensus 47 ~~~~~~l~~~i~~~l~~ 63 (70)
+.+++++.+++.+++++
T Consensus 104 ~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 104 DITVDEAEKFFQAFFQG 120 (287)
T ss_pred cCCHHHHHHHHHHHHcC
Confidence 34577777777777654
No 174
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=61.50 E-value=15 Score=21.28 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=29.1
Q ss_pred hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHH
Q psy381 14 YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60 (70)
Q Consensus 14 ~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 60 (70)
.|+|.--+=++.|+..|.....++|+--+.-+..++.+.+.+.+++.
T Consensus 120 tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~~ 166 (169)
T PF12689_consen 120 TGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEKF 166 (169)
T ss_dssp H---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHH
T ss_pred cCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHHH
Confidence 34444333347899999999888998777666788999988887653
No 175
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=61.49 E-value=12 Score=18.62 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.8
Q ss_pred ecCCCCCHHHHHHHHHHHhCChhhhhcC
Q psy381 43 LEFDNLNEDNIYDALITVLEDPIFQFFL 70 (70)
Q Consensus 43 ~~~~~~~~~~l~~~i~~~l~~~~~~~~l 70 (70)
+....++++.+......+-.||.+++++
T Consensus 51 I~~~GLtv~~fN~I~~~~q~Dp~L~~rI 78 (78)
T PF13767_consen 51 IEENGLTVERFNEITQAAQSDPELRQRI 78 (78)
T ss_pred HHHcCCCHHHHHHHHHHHHcCHHHHhcC
Confidence 4557789999999999999999998874
No 176
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=61.11 E-value=12 Score=21.11 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHh
Q psy381 49 NEDNIYDALITVL 61 (70)
Q Consensus 49 ~~~~l~~~i~~~l 61 (70)
+++.+.+.++-++
T Consensus 131 tp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 131 TPEQAIETLKYIL 143 (144)
T ss_pred CHHHHHHHHHHhh
Confidence 5666666555443
No 177
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=61.06 E-value=48 Score=22.34 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHhCCceeeecCC--CChHHHHHHHHHhC-ceeEecCCCCCHHHHHHHHHHHh
Q psy381 3 GGLQSLQEAFHYGVKLICIPMF--GDQDLNAQRIAKIK-TGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~--~dq~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
-|..++.+.+-...|.+.-|+. .--..-+..+.+.| +| .+....++++.|.+.|+++-
T Consensus 6 lg~~~f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG-~lgag~l~~e~l~~~I~~ir 66 (444)
T TIGR02814 6 LGSAAFREDYGVRYAYVAGAMANGIASAELVIAMGRAGILG-FFGAGGLPLEEVEQAIHRIQ 66 (444)
T ss_pred cCChHHHHHhCCCCcEECccccCCCCCHHHHHHHHhCCcee-eeCCCCCCHHHHHHHHHHHH
Confidence 3677888888888899999985 33344555555554 45 44456778999999988773
No 178
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.69 E-value=27 Score=21.95 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHhCC
Q psy381 48 LNEDNIYDALITVLED 63 (70)
Q Consensus 48 ~~~~~l~~~i~~~l~~ 63 (70)
++++++.+++++++++
T Consensus 104 ~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 104 LDPDNALQQLSDVLEG 119 (292)
T ss_pred cCHHHHHHHHHHHHcC
Confidence 4577788888888764
No 179
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=60.65 E-value=13 Score=23.25 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCceeeecCCCChHHHHHHHHHhCceeEecC
Q psy381 15 GVKLICIPMFGDQDLNAQRIAKIKTGVVLEF 45 (70)
Q Consensus 15 g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~ 45 (70)
.--+.++|+..|-..-|+++++.|+..+++.
T Consensus 135 ~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPl 165 (267)
T CHL00162 135 KKGFTVLPYINADPMLAKHLEDIGCATVMPL 165 (267)
T ss_pred HCCCEEeecCCCCHHHHHHHHHcCCeEEeec
Confidence 3446788999999999999999999988864
No 180
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.39 E-value=26 Score=22.07 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=26.4
Q ss_pred CcHHHHHHHHH----hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFH----YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~----~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||=||++.+.. .++|++.+-... +|... +.+++++.+++.+++++
T Consensus 76 GGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFL~---~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 76 GGDGTFLSVAREIAPRAVPIIGINQGH-------------LGFLT---QIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCcHHHHHHHHHhcccCCCEEEEecCC-------------CeEee---ccCHHHHHHHHHHHHcC
Confidence 67777777753 267777775311 22222 23567777777777654
No 181
>PHA02819 hypothetical protein; Provisional
Probab=60.10 E-value=5.8 Score=19.82 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=20.6
Q ss_pred eeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 40 GVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 40 g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
|+-+...+-+-+++.+.++.+|.|++++.
T Consensus 10 GvFmsS~DdDFnnFI~VVksVLtd~s~~~ 38 (71)
T PHA02819 10 GVFMSSSDDDFNNFINVVKSVLNNENYNK 38 (71)
T ss_pred HhhhCCchhHHHHHHHHHHHHHcCCCCcc
Confidence 44454444467888999999999877654
No 182
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.58 E-value=33 Score=21.37 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=27.2
Q ss_pred CcHHHHHHHHH-hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFH-YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~-~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||-||++.+.. ...|++.+-... +|-. .+.+++++.+++.+++++
T Consensus 60 GGDGT~L~a~~~~~~PilGIN~G~-------------lGFL---~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 60 GGDGTILRTLQRAKGPILGINMGG-------------LGFL---TEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred cCcHHHHHHHHHcCCCEEEEECCC-------------CccC---cccCHHHHHHHHHHHHcC
Confidence 67777777765 345666664311 1211 234678888888888765
No 183
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.26 E-value=28 Score=21.70 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=23.8
Q ss_pred CcHHHHHHHHH----hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 3 GGLQSLQEAFH----YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 3 gG~~t~~e~l~----~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
||-||++.+.. .++|++.+.... +|-.. +.+++++.+.+.++++
T Consensus 50 GGDGT~L~aa~~~~~~~~PilgIn~G~-------------lGFL~---~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 50 GGDGNMLGRARVLAKYDIPLIGINRGN-------------LGFLT---DIDPKNAYEQLEACLE 97 (272)
T ss_pred CCcHHHHHHHHHhccCCCcEEEEeCCC-------------Ccccc---cCCHHHHHHHHHHHHh
Confidence 56677766533 256766664311 22211 2356677777777665
No 184
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.14 E-value=35 Score=21.48 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=26.7
Q ss_pred CcHHHHHHHHH----hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFH----YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~----~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||-||++++.. .++|++.+... .+|.. ...+++++.+++.+++++
T Consensus 70 GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGFl---~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 70 GGDGSLLGAARALARHNVPVLGINRG-------------RLGFL---TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred eCcHHHHHHHHHhcCCCCCEEEEeCC-------------ccccc---ccCCHHHHHHHHHHHHcC
Confidence 56666666653 25566666531 12211 244678888888888764
No 185
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=58.00 E-value=68 Score=23.10 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHhCCceeeecC
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~ 23 (70)
|+|+.++.-+++.|.-.+.+|-
T Consensus 196 ~~G~LAl~aalA~gad~iliPE 217 (745)
T TIGR02478 196 HCGYLALMAAIATGADYVFIPE 217 (745)
T ss_pred cccHHHHHHHhccCCCEEEecC
Confidence 7899999999999999999996
No 186
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=57.66 E-value=38 Score=20.11 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=31.8
Q ss_pred hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhh
Q psy381 14 YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIF 66 (70)
Q Consensus 14 ~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~ 66 (70)
.+.|+|++-...+... .......|+.-.+.. +.+.+.|.++|+.++....|
T Consensus 80 p~~~vvvlt~~~~~~~-~~~~~~~Ga~G~l~K-~~~~~~L~~aI~~v~~G~~~ 130 (216)
T PRK10100 80 NNIKILLLNTPEDYPY-REIENWPHINGVFYA-MEDQERVVNGLQGVLRGECY 130 (216)
T ss_pred CCCcEEEEECCchhHH-HHHHHhcCCeEEEEC-CCCHHHHHHHHHHHHcCCcc
Confidence 4678888866555322 222222476444443 45899999999999876543
No 187
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=57.40 E-value=41 Score=21.11 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHh----CCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 2 QGGLQSLQEAFHY----GVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 2 hgG~~t~~e~l~~----g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
-||-||+++++.. ++|++.+.... +|.. .+.+++++.+.+.++++.
T Consensus 70 ~GGDGt~l~~~~~~~~~~~pilGIn~G~-------------lGFL---~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 70 LGGDGTMLGIGRQLAPYGVPLIGINHGR-------------LGFI---TDIPLDDMQETLPPMLAG 119 (291)
T ss_pred ECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------cccc---ccCCHHHHHHHHHHHHcC
Confidence 3677777777553 56777664311 1211 133566677777776644
No 188
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=57.21 E-value=32 Score=20.49 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHhCCceeeecCCC--ChHHHHHHHHHhCceeEe
Q psy381 3 GGLQSLQEAFHYGVKLICIPMFG--DQDLNAQRIAKIKTGVVL 43 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~~--dq~~na~~~~~~g~g~~~ 43 (70)
|...++-.++-.|+|+.++|... +...-...+-+.| +..+
T Consensus 169 Gt~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G-A~~v 210 (212)
T PF02481_consen 169 GTLHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG-AKLV 210 (212)
T ss_dssp THHHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT--EE-
T ss_pred hHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC-CEee
Confidence 34678889999999999998633 3455556677777 4433
No 189
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.08 E-value=41 Score=20.68 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=27.3
Q ss_pred CcHHHHHHHHH-hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFH-YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~-~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||-||++.+.. .++|++.+.... +|... +.+++++.+++.++++.
T Consensus 49 GGDGT~L~a~~~~~~Pilgin~G~-------------lGfl~---~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 49 GGDGTVLKAAKKVGTPLVGFKAGR-------------LGFLS---SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCcHHHHHHHHHcCCCEEEEeCCC-------------Ccccc---ccCHHHHHHHHHHHHcC
Confidence 67788877755 477777775311 22222 33567777777777654
No 190
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=55.90 E-value=51 Score=21.01 Aligned_cols=37 Identities=32% Similarity=0.587 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhCCceeee-cCCCChHHHHHHHHHhCce
Q psy381 4 GLQSLQEAFHYGVKLICI-PMFGDQDLNAQRIAKIKTG 40 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~g~g 40 (70)
|.-.+.|++..|.|+|++ |++..=..-+..+.+++..
T Consensus 111 g~e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~ 148 (308)
T COG1560 111 GLEHLEEALANGRGVILVTPHFGNWELGGRALAQQGPK 148 (308)
T ss_pred CHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCC
Confidence 556788999999999887 8877777777778877665
No 191
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=55.44 E-value=11 Score=22.86 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHHHHHhCCceeee
Q psy381 6 QSLQEAFHYGVKLICI 21 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~ 21 (70)
..-+||+..|+|+++.
T Consensus 209 tvGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 209 TVGLEALLHGKPVIVF 224 (269)
T ss_pred HHHHHHHHcCCceEEe
Confidence 4568999999999998
No 192
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=51.33 E-value=51 Score=19.65 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=30.1
Q ss_pred HhCCceeeecCCC----ChHHHHHHHHH-hCceeE-ecCCC-C--------CHHHHHHHHHHHhCChh
Q psy381 13 HYGVKLICIPMFG----DQDLNAQRIAK-IKTGVV-LEFDN-L--------NEDNIYDALITVLEDPI 65 (70)
Q Consensus 13 ~~g~P~l~~P~~~----dq~~na~~~~~-~g~g~~-~~~~~-~--------~~~~l~~~i~~~l~~~~ 65 (70)
-.++|++++|-.. +...|..++.+ .|.-++ +.+++ . +-+-|.+++...+.+..
T Consensus 119 ke~~PvvlaPAMN~~M~~~~~ni~~L~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (196)
T PRK08305 119 RNQRPVVLAISTNDALGLNAKNLGRLLNTKNIYFVPFGQDDPVKKPNSLVARMDLLIDTVEEALEGKQ 186 (196)
T ss_pred cCCCCEEEEECCCHHHHhCHHHHHHHHhcCCEEEEecCCCCCCCCchhHHhhHHhhHHHHHHHHhCCc
Confidence 3589999999854 33567777774 555433 22222 0 12335566666665543
No 193
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=49.49 E-value=16 Score=20.11 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHhCChhhhhc
Q psy381 49 NEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 49 ~~~~l~~~i~~~l~~~~~~~~ 69 (70)
+++.+...++++|.+|+.+..
T Consensus 34 ~~~~l~~q~~RML~dpr~~~~ 54 (128)
T PF07631_consen 34 TPEQLRAQAERMLADPRARRF 54 (128)
T ss_pred CHHHHHHHHHHHHcCccHHHH
Confidence 789999999999999876643
No 194
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.48 E-value=9.6 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=9.6
Q ss_pred CCcHHHHHHHHHhCCceeeecC
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~ 23 (70)
+||......... ++|++-+|.
T Consensus 41 RG~ta~~lr~~~-~iPVV~I~~ 61 (176)
T PF06506_consen 41 RGGTAELLRKHV-SIPVVEIPI 61 (176)
T ss_dssp EHHHHHHHHCC--SS-EEEE--
T ss_pred CCHHHHHHHHhC-CCCEEEECC
Confidence 344444444444 777777776
No 195
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=48.93 E-value=8.4 Score=19.90 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=12.6
Q ss_pred HHHHhCCceeeecCCC
Q psy381 10 EAFHYGVKLICIPMFG 25 (70)
Q Consensus 10 e~l~~g~P~l~~P~~~ 25 (70)
+..+.|+|+++.|+..
T Consensus 53 ~G~Y~G~PViV~PI~~ 68 (84)
T PF09884_consen 53 EGPYKGVPVIVAPIKD 68 (84)
T ss_pred CcccCCeeEEEEEEEc
Confidence 4457899999999843
No 196
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=47.72 E-value=42 Score=23.33 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=32.6
Q ss_pred HHHHHHHhCCceeeecCCCCh-HHHHH----------------HHHH-hCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 7 SLQEAFHYGVKLICIPMFGDQ-DLNAQ----------------RIAK-IKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~~dq-~~na~----------------~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
+-+||++.|+|.|--=+...+ ..|.. .++. .|-=-+..-+.-+.++|.++|+++|.++
T Consensus 356 aPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 356 APLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred ChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 568999999988753221111 11111 1221 2322222323447899999999998774
No 197
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=47.08 E-value=17 Score=22.41 Aligned_cols=19 Identities=53% Similarity=0.774 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCChhhhhc
Q psy381 51 DNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 51 ~~l~~~i~~~l~~~~~~~~ 69 (70)
+.+.++++++++|++|++.
T Consensus 220 ~~l~~a~~~~~~~pe~~~~ 238 (274)
T PF03401_consen 220 DKLADAIKKALEDPEFQEF 238 (274)
T ss_dssp HHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 4688889999999999875
No 198
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=46.86 E-value=87 Score=21.00 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhCCceeeecCC--CChHHHHHHHHHh-CceeEecCCCCCHHHHHHHHHHHh
Q psy381 4 GLQSLQEAFHYGVKLICIPMF--GDQDLNAQRIAKI-KTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 4 G~~t~~e~l~~g~P~l~~P~~--~dq~~na~~~~~~-g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
|.-++.+.+-...|+|.-|+. .--..-+..+.+. |+| .+....++++.|.+.|+++-
T Consensus 2 g~~~f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG-~lgag~l~~e~l~~~I~~ir 61 (418)
T cd04742 2 GDRSFKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLG-FFGAGGLPLDEVEQAIERIQ 61 (418)
T ss_pred CChHHHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCee-eecCCCCCHHHHHHHHHHHH
Confidence 455678888888999999985 3334455555555 445 45556678999999998883
No 199
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.18 E-value=64 Score=22.26 Aligned_cols=45 Identities=22% Similarity=0.500 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHh----CCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFHY----GVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~~----g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||=||++.+... ++|++.+-... +|-. .+.+++++.+.+.+++++
T Consensus 356 GGDGT~L~aa~~~~~~~~PilGin~G~-------------lGFL---~~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 356 GGDGTVLRASKLVNGEEIPIICINMGT-------------VGFL---TEFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCcC---cccCHHHHHHHHHHHHcC
Confidence 677777776543 66777765421 2211 234677788888887764
No 200
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=45.71 E-value=71 Score=22.03 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHhCC
Q psy381 47 NLNEDNIYDALITVLED 63 (70)
Q Consensus 47 ~~~~~~l~~~i~~~l~~ 63 (70)
+++++++.++|.+++++
T Consensus 302 ~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 302 PFHSEQYRDCLDAILKG 318 (508)
T ss_pred ccCHHHHHHHHHHHHcC
Confidence 34567777777777654
No 201
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=44.59 E-value=22 Score=20.70 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHH---------hCCceeeecC--CCChH-HHHHHHHHhCc
Q psy381 2 QGGLQSLQEAFH---------YGVKLICIPM--FGDQD-LNAQRIAKIKT 39 (70)
Q Consensus 2 hgG~~t~~e~l~---------~g~P~l~~P~--~~dq~-~na~~~~~~g~ 39 (70)
.||.||+-|.+. +.+|++++-. +.|.. ...+.+.+.|.
T Consensus 104 PGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 104 PGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred CCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 478999988743 3899988732 33332 23345555553
No 202
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=44.00 E-value=92 Score=20.51 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=33.1
Q ss_pred HhCCceeeecCCCCh-------HHHHHHHHHhCceeEecC-----------C-CCCHHHHHHHHHHHhC
Q psy381 13 HYGVKLICIPMFGDQ-------DLNAQRIAKIKTGVVLEF-----------D-NLNEDNIYDALITVLE 62 (70)
Q Consensus 13 ~~g~P~l~~P~~~dq-------~~na~~~~~~g~g~~~~~-----------~-~~~~~~l~~~i~~~l~ 62 (70)
.+-+|++++|-..+. ..|...+.+.|+-++-+. + -.+++++...+.+.+.
T Consensus 110 ~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~~~~~ 178 (390)
T TIGR00521 110 AASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLAEPETIVKAAEREFS 178 (390)
T ss_pred HhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCCCCCCHHHHHHHHHHHHh
Confidence 344999999984332 467888888876554332 1 2467888887777664
No 203
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=43.68 E-value=40 Score=23.82 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=28.3
Q ss_pred HHHHHHHhCCceeeecCCC-ChHHHHH--HHHHhCceeEecCCCCCHHHHHHHHHHHh
Q psy381 7 SLQEAFHYGVKLICIPMFG-DQDLNAQ--RIAKIKTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~~-dq~~na~--~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
|-+|+.++|+|.|.--+.+ -+..+-. .-...|+-++-+ .+.+.++..+.+.+.|
T Consensus 485 TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR-~~~n~~e~v~~la~~l 541 (633)
T PF05693_consen 485 TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDR-RDKNYDESVNQLADFL 541 (633)
T ss_dssp HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-S-SSS-HHHHHHHHHHHH
T ss_pred ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeC-CCCCHHHHHHHHHHHH
Confidence 6899999999999986621 1111100 112345554444 4557777666666655
No 204
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=43.32 E-value=34 Score=21.36 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.9
Q ss_pred CCcHHHHHHHHHhCCceeeecCC
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMF 24 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~ 24 (70)
|+|+.++.-+++.+...+.+|-.
T Consensus 172 ~~G~LAl~~ala~~a~~ilipE~ 194 (282)
T PF00365_consen 172 NAGWLALAAALATGADLILIPEE 194 (282)
T ss_dssp TSTHHHHHHHHHHTSSEEEBTTS
T ss_pred CcCHHHHHHHhccCCCEEEEecc
Confidence 78999999999999999999963
No 205
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=43.01 E-value=71 Score=18.91 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=35.9
Q ss_pred HHHHHHhCCceeeecCCCChHHHHHHHHHhCceeE-ecCCCCCHHHHHHHHHHHhCC
Q psy381 8 LQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVV-LEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 8 ~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~-~~~~~~~~~~l~~~i~~~l~~ 63 (70)
+-|.+.+++|.|..=+..+.......+...|--.+ +++. +.+.+...|..+|.+
T Consensus 123 ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~--NR~~i~~~Il~~L~~ 177 (179)
T COG1618 123 VEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPE--NRNRILNEILSVLKG 177 (179)
T ss_pred HHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccc--hhhHHHHHHHHHhcc
Confidence 45667799998887554555556667777766666 6544 456777777766654
No 206
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=42.41 E-value=15 Score=20.85 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHHH---hCCceeeecC--------CCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 5 LQSLQEAFH---YGVKLICIPM--------FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 5 ~~t~~e~l~---~g~P~l~~P~--------~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
.+++.|.+. ...+.+.+|- ..+|..|.+....+-.|...++.-.....-...++.+|.
T Consensus 70 ~~~V~el~~~~r~~~R~VtVPA~lLe~vl~~A~~~L~~~~~~a~~~~~~~p~~v~~~~~~~~~~r~ll~ 138 (139)
T PF07128_consen 70 SGTVMELIREVRRAARQVTVPADLLERVLRLAEQALWKREWAAWDAGRPVPESVTRRLADIAQVRALLK 138 (139)
T ss_pred HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 344554443 3458888885 356777777766666665555322223334445555553
No 207
>PHA03162 hypothetical protein; Provisional
Probab=41.86 E-value=28 Score=19.55 Aligned_cols=26 Identities=8% Similarity=0.094 Sum_probs=19.8
Q ss_pred cCCCCCHHHHHHHHHHH-hCChhhhhc
Q psy381 44 EFDNLNEDNIYDALITV-LEDPIFQFF 69 (70)
Q Consensus 44 ~~~~~~~~~l~~~i~~~-l~~~~~~~~ 69 (70)
+..+.+.|+|...+.++ |+|..++.+
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkk 35 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKK 35 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999988 778776654
No 208
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=41.71 E-value=1.4e+02 Score=21.80 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHhCCceeeecC
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~ 23 (70)
|||+.+++-+++.|.-.+++|-
T Consensus 199 ~~G~LAl~aglA~gAd~ilIPE 220 (762)
T cd00764 199 HCGYLALVSGLATGADWIFIPE 220 (762)
T ss_pred CchHHHHHHHhccCCCEEEecC
Confidence 8999999999999999999996
No 209
>PTZ00056 glutathione peroxidase; Provisional
Probab=41.38 E-value=54 Score=19.22 Aligned_cols=23 Identities=9% Similarity=-0.008 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHhCChhhhh
Q psy381 46 DNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 46 ~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
+..+++.+.+.|.+++..++|++
T Consensus 163 g~~~~~~l~~~I~~ll~~~~~~~ 185 (199)
T PTZ00056 163 PRTEPLELEKKIAELLGVKDYQE 185 (199)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999998876
No 210
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=40.56 E-value=35 Score=18.67 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHh---------CC-ceeeecC--CCChHH-HHHHHHHhC
Q psy381 2 QGGLQSLQEAFHY---------GV-KLICIPM--FGDQDL-NAQRIAKIK 38 (70)
Q Consensus 2 hgG~~t~~e~l~~---------g~-P~l~~P~--~~dq~~-na~~~~~~g 38 (70)
.||.||+-|.... .+ |++++-. +.+... ..+.+.+.|
T Consensus 61 PGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g 110 (133)
T PF03641_consen 61 PGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEG 110 (133)
T ss_dssp S-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTT
T ss_pred ecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCC
Confidence 4899999887433 34 9988842 344432 233455544
No 211
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=39.91 E-value=76 Score=20.86 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=14.2
Q ss_pred CcHHHHH---HHHHhCCceeeecC
Q psy381 3 GGLQSLQ---EAFHYGVKLICIPM 23 (70)
Q Consensus 3 gG~~t~~---e~l~~g~P~l~~P~ 23 (70)
||-||.- +++-..+|+|.+|.
T Consensus 108 GGDGTarDVa~av~~~vPvLGipa 131 (355)
T COG3199 108 GGDGTARDVAEAVGADVPVLGIPA 131 (355)
T ss_pred CCCccHHHHHhhccCCCceEeecc
Confidence 4555544 44444899999996
No 212
>PRK10116 universal stress protein UspC; Provisional
Probab=39.41 E-value=22 Score=18.95 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.3
Q ss_pred hCCceeeecCCCC
Q psy381 14 YGVKLICIPMFGD 26 (70)
Q Consensus 14 ~g~P~l~~P~~~d 26 (70)
.++|++++|...|
T Consensus 130 ~~~pVLvv~~~~~ 142 (142)
T PRK10116 130 SEVDVLLVPLTGD 142 (142)
T ss_pred CCCCEEEEeCCCC
Confidence 4899999997554
No 213
>PHA03155 hypothetical protein; Provisional
Probab=39.00 E-value=35 Score=18.70 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHH-hCChhhhhc
Q psy381 46 DNLNEDNIYDALITV-LEDPIFQFF 69 (70)
Q Consensus 46 ~~~~~~~l~~~i~~~-l~~~~~~~~ 69 (70)
.+.+.|+|...+.++ ++|..++.+
T Consensus 6 ~~~tvEeLaaeL~kL~~ENK~LKkk 30 (115)
T PHA03155 6 ACADVEELEKELQKLKIENKALKKK 30 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999888888 777776654
No 214
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=38.93 E-value=30 Score=17.90 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhCChhhhhc
Q psy381 51 DNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 51 ~~l~~~i~~~l~~~~~~~~ 69 (70)
+...+.++++++||..+..
T Consensus 19 ~~~~~l~~~vl~dp~V~~F 37 (94)
T PF07319_consen 19 ERYEQLKQEVLSDPEVQAF 37 (94)
T ss_dssp HHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHH
Confidence 4567788889999887764
No 215
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=38.42 E-value=36 Score=19.42 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCceeeec
Q psy381 5 LQSLQEAFHYGVKLICIP 22 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P 22 (70)
.+.+.+|...++|+|++.
T Consensus 76 ~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 76 LPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred hHHHHHHHhcCCCEEEEE
Confidence 356789999999999994
No 216
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=38.31 E-value=95 Score=21.22 Aligned_cols=54 Identities=30% Similarity=0.333 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHhCCceeeecCCC------ChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHh
Q psy381 3 GGLQSLQEAFHYGVKLICIPMFG------DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 3 gG~~t~~e~l~~g~P~l~~P~~~------dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
||. |=++++.+|++-|+-|..+ |-..+. ....|.|..+... +++.+..++++.+
T Consensus 381 cGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf~f~~~--~~~~l~~al~rA~ 440 (487)
T COG0297 381 CGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGFLFLQT--NPDHLANALRRAL 440 (487)
T ss_pred CcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEEEEecC--CHHHHHHHHHHHH
Confidence 454 3688999999777777732 222222 3446777777643 8999999888664
No 217
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.23 E-value=69 Score=21.80 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=36.1
Q ss_pred HHHhCCceeeecCCCCh-------HHHHHHHHHhCceeEecCC-------------CCCHHHHHHHHHHHhC
Q psy381 11 AFHYGVKLICIPMFGDQ-------DLNAQRIAKIKTGVVLEFD-------------NLNEDNIYDALITVLE 62 (70)
Q Consensus 11 ~l~~g~P~l~~P~~~dq-------~~na~~~~~~g~g~~~~~~-------------~~~~~~l~~~i~~~l~ 62 (70)
.++.+.|++++|-.... ..|...+.+.|+-++-+.. -.++++|...+.+++.
T Consensus 176 ~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 176 LLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred HHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 35679999999975433 4788888888876543211 1357888888887764
No 218
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=38.11 E-value=86 Score=18.44 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=25.6
Q ss_pred HHHHhCCceeeecC-CCCh---HHHHHHHHHhCceeEec
Q psy381 10 EAFHYGVKLICIPM-FGDQ---DLNAQRIAKIKTGVVLE 44 (70)
Q Consensus 10 e~l~~g~P~l~~P~-~~dq---~~na~~~~~~g~g~~~~ 44 (70)
-++..++|.+++|. ..+. ..|...+.+.|+-++-+
T Consensus 110 ~~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P 148 (185)
T PRK06029 110 VMLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPP 148 (185)
T ss_pred HHHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECC
Confidence 35778999999996 2222 47888899888776544
No 219
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=37.95 E-value=71 Score=17.45 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCceeeecC
Q psy381 5 LQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~ 23 (70)
.+.+.++...++|+|++.-
T Consensus 75 ~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 75 VTGLANAYLDSIPLLVITG 93 (155)
T ss_pred HHHHHHHHhhCCCEEEEeC
Confidence 3567888889999999953
No 220
>KOG3446|consensus
Probab=37.90 E-value=53 Score=17.21 Aligned_cols=46 Identities=20% Similarity=0.119 Sum_probs=29.5
Q ss_pred CCceeeecCCCChH-HHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 15 GVKLICIPMFGDQD-LNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 15 g~P~l~~P~~~dq~-~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
..|+++---.+-|+ .+|++ +.|.-..+...+++.+++.+++..+..
T Consensus 49 ~lPILIREcSgVqPrl~ARY--~~G~E~~v~L~~~s~~~i~kale~l~k 95 (97)
T KOG3446|consen 49 DLPILIRECSGVQPRLWARY--GNGVERSVSLANLSAPQIHKALENLGK 95 (97)
T ss_pred CCcEeehhhcCCchHHHHHh--cCCceEEeehhhcchHHHHHHHHHHhc
Confidence 34555433334443 34442 346667788889999999999988764
No 221
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=37.64 E-value=43 Score=14.85 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHhCC
Q psy381 49 NEDNIYDALITVLED 63 (70)
Q Consensus 49 ~~~~l~~~i~~~l~~ 63 (70)
++++|..+|..+.++
T Consensus 1 tee~l~~Ai~~v~~g 15 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNG 15 (45)
T ss_dssp -HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhC
Confidence 356777777777655
No 222
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=37.45 E-value=43 Score=18.02 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=14.4
Q ss_pred HHHHHHHhCCceeeecCCCC
Q psy381 7 SLQEAFHYGVKLICIPMFGD 26 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~~d 26 (70)
.+..++..++|++++|....
T Consensus 102 ~~~~~l~~~~pvvi~P~mn~ 121 (129)
T PF02441_consen 102 VALAALKEGKPVVIAPAMNP 121 (129)
T ss_dssp HHHHHHHTTCGEEEEEEESH
T ss_pred HHHHHccCCCCeEEEEeCCH
Confidence 34556666999999997543
No 223
>PRK13840 sucrose phosphorylase; Provisional
Probab=37.31 E-value=58 Score=22.27 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=29.8
Q ss_pred hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHH
Q psy381 14 YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALI 58 (70)
Q Consensus 14 ~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~ 58 (70)
.|+|+|-+.-..-..-.-..+++.|.++.+.....+.+++.+.+.
T Consensus 371 ~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~ 415 (495)
T PRK13840 371 PGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALE 415 (495)
T ss_pred CCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHH
Confidence 488888765422233334456668899999888888877766653
No 224
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=37.28 E-value=81 Score=17.90 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=36.5
Q ss_pred HHHHhCCceeeecCCCChHHHHHHHHH-hCceeEecCCCCCHHHHHHHHHHHh
Q psy381 10 EAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 10 e~l~~g~P~l~~P~~~dq~~na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
....+|+|+|+----..-+.-.+.+.. .++-+..+..+++.++=.+..++..
T Consensus 71 ~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 71 WISEYGKPVIVATDVSPPPETVKKIARSFNAVLYTPERDLSVEEKQELAREYS 123 (138)
T ss_pred HHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhhC
Confidence 345679999997655555666666666 7888888888888776555555553
No 225
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=37.06 E-value=1.2e+02 Score=19.62 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCceeee-cCCC--C-hHHHHHHHHHhCceeEecCC----------CC-CHHHHHHHHHHHh
Q psy381 5 LQSLQEAFHYGVKLICI-PMFG--D-QDLNAQRIAKIKTGVVLEFD----------NL-NEDNIYDALITVL 61 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~-P~~~--d-q~~na~~~~~~g~g~~~~~~----------~~-~~~~l~~~i~~~l 61 (70)
-+..+||.+.|+|+-+. |-.. + ....-+.+++++++...+.+ -+ ..+++.+.|+..+
T Consensus 255 inM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~~~e~ysy~PLnEt~RiA~~Ira~l 326 (329)
T COG3660 255 INMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNLALEEYSYKPLNETERIAEEIRAEL 326 (329)
T ss_pred hhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCcchhhhcccccCCchHHHHHHHHHHHHh
Confidence 36689999999999776 3322 1 22344456666777665431 12 2456777666554
No 226
>PLN02859 glutamine-tRNA ligase
Probab=36.50 E-value=59 Score=23.68 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=18.8
Q ss_pred HHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 34 IAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 34 ~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
-++.|+|+.+ +++++.++|.+.++.
T Consensus 110 ek~CGVGV~V-----T~EqI~~~V~~~i~~ 134 (788)
T PLN02859 110 EEACGVGVVV-----SPEDIEAAVNEVFEE 134 (788)
T ss_pred HHhCCCCEEE-----CHHHHHHHHHHHHHh
Confidence 3335888888 588888888888754
No 227
>PRK14071 6-phosphofructokinase; Provisional
Probab=36.18 E-value=1.1e+02 Score=19.85 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.3
Q ss_pred CCcHHHHHHHHHhCCceeeecC
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~ 23 (70)
|+||-++.-+++.|.-.+.+|-
T Consensus 187 ~~G~LAl~~~la~ga~~iliPE 208 (360)
T PRK14071 187 DAGHIALAAGIAGGADVILIPE 208 (360)
T ss_pred CccHHHHHhHhhcCCCEEEECC
Confidence 7899999999999999999986
No 228
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=36.09 E-value=1.2e+02 Score=19.43 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.5
Q ss_pred CCCcHHHHHHHHHh---CCceeeecC
Q psy381 1 MQGGLQSLQEAFHY---GVKLICIPM 23 (70)
Q Consensus 1 ~hgG~~t~~e~l~~---g~P~l~~P~ 23 (70)
|+||+|-+.+.++. +.|+|....
T Consensus 98 H~GGAN~LA~~iA~~lga~pVITTAt 123 (315)
T PRK05788 98 HHGGANELARDLAKILGAVPVITTAT 123 (315)
T ss_pred CcccHHHHHHHHHHHhCCEEEEeCCc
Confidence 45888888777665 889988865
No 229
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=35.22 E-value=1.3e+02 Score=19.55 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=30.4
Q ss_pred CCceeeecCCCChHHHHHHHHHhCceeEe-cC---CCCCHHHHHHHHHHHhCC
Q psy381 15 GVKLICIPMFGDQDLNAQRIAKIKTGVVL-EF---DNLNEDNIYDALITVLED 63 (70)
Q Consensus 15 g~P~l~~P~~~dq~~na~~~~~~g~g~~~-~~---~~~~~~~l~~~i~~~l~~ 63 (70)
+.|++.++-.. ++-..+.+.-.|+|++. +. ..++.++|.++|.+...+
T Consensus 140 ~~~~i~~s~~a-H~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~ 191 (373)
T PF00282_consen 140 PKPVIYVSEQA-HYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIAN 191 (373)
T ss_dssp SSEEEEEETTS--THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHT
T ss_pred ccccccccccc-ccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccc
Confidence 35677777544 45556666668888643 21 346789999988876654
No 230
>KOG3285|consensus
Probab=34.41 E-value=1.1e+02 Score=18.40 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHh
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
||.+-.+.|...+|+-.|..-...=-...-.+..++|+-+.+.. .+++...++.++
T Consensus 13 kGSa~iV~EFf~y~iNSILyQRgiYPaEdF~~vkKYgLtllvs~----D~elk~f~~~il 68 (203)
T KOG3285|consen 13 KGSAQIVSEFFEYGINSILYQRGIYPAEDFVRVKKYGLTLLVSH----DEELKTFIRNIL 68 (203)
T ss_pred echHHHHHHHHHhhhhHHHHhccCCcHHHhhHHHhcCceEEEec----CHHHHHHHHHHH
Confidence 56778899999999988876432111223345566788777762 344444444444
No 231
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=34.13 E-value=91 Score=17.56 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=24.2
Q ss_pred HhCCceeeecCCCC--hHHHHHHHHHhCceeEecCCCCCHHHHHHHHH
Q psy381 13 HYGVKLICIPMFGD--QDLNAQRIAKIKTGVVLEFDNLNEDNIYDALI 58 (70)
Q Consensus 13 ~~g~P~l~~P~~~d--q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~ 58 (70)
..|++++.+....+ ...-.+.+.+.+-|......+.+...+..+++
T Consensus 130 ~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 130 ARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred hcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 34666666654332 22334455555556666555656666655543
No 232
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=33.86 E-value=54 Score=18.21 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHhCCceeeecCCCChHHHHHHHHHhCceeEe-----------cC---CCCCHHHHHHHHHHHh
Q psy381 12 FHYGVKLICIPMFGDQDLNAQRIAKIKTGVVL-----------EF---DNLNEDNIYDALITVL 61 (70)
Q Consensus 12 l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~-----------~~---~~~~~~~l~~~i~~~l 61 (70)
.+++.++...|...|.-.++-|+.+ |....+ .. .+++.+++..+|+-+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq-G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ-GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh-chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 5678899999999999988888776 322221 11 3468899998887654
No 233
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.24 E-value=1.1e+02 Score=18.11 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 28 DLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 28 ~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
..|+.+.++.|.=-++--+..+.+.|..+..+-++|..
T Consensus 111 ~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~ 148 (176)
T COG3195 111 ELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDNDR 148 (176)
T ss_pred HHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhcccH
Confidence 47888999999877766556678888888887777643
No 234
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=33.18 E-value=39 Score=19.50 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCceeee
Q psy381 6 QSLQEAFHYGVKLICI 21 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~ 21 (70)
-.+.+++..|+|+|+.
T Consensus 114 ~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 114 DEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 3467799999999986
No 235
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=33.16 E-value=49 Score=21.56 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHhCCceeeecC
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~ 23 (70)
|||+-++.-+++.|.=++++|-
T Consensus 174 ~aG~lAl~aglA~~a~~ilipE 195 (347)
T COG0205 174 HAGWLALAAGLATGADIILIPE 195 (347)
T ss_pred ChhHHHHHHHHhcCCCEEEecC
Confidence 8999999999999988999996
No 236
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=33.07 E-value=1e+02 Score=17.85 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=37.1
Q ss_pred CcHHHHHHHHH-hCCceeeecC------CCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 3 GGLQSLQEAFH-YGVKLICIPM------FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 3 gG~~t~~e~l~-~g~P~l~~P~------~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
+|-+|++..+. .|.|++-.-- ..++..........|-.+.-..+.+++..|.+. +..|++.++
T Consensus 11 sGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~---vF~d~~~~~ 80 (180)
T PF01121_consen 11 SGKSTVSKILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEI---VFSDPEKLK 80 (180)
T ss_dssp SSHHHHHHHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHH---HTTSHHHHH
T ss_pred CCHHHHHHHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHH---HhcCHHHHH
Confidence 35566666655 6777775432 234555566666678777666677788887764 345555444
No 237
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=33.04 E-value=47 Score=19.38 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhCCh
Q psy381 46 DNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 46 ~~~~~~~l~~~i~~~l~~~ 64 (70)
..+|.+.|..+|.+.|+||
T Consensus 138 ~FIT~ENLd~~IeeALdnp 156 (170)
T PF14943_consen 138 NFITRENLDAAIEEALDNP 156 (170)
T ss_pred CcCCHHhHHHHHHHHHcCC
Confidence 3468999999999999987
No 238
>PRK06270 homoserine dehydrogenase; Provisional
Probab=32.71 E-value=96 Score=19.82 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=19.2
Q ss_pred HHHHHHHhCCceee---ecCCCChHHHHHHHHHhCceeEe
Q psy381 7 SLQEAFHYGVKLIC---IPMFGDQDLNAQRIAKIKTGVVL 43 (70)
Q Consensus 7 t~~e~l~~g~P~l~---~P~~~dq~~na~~~~~~g~g~~~ 43 (70)
-+.+++..|+++++ -|....-..-.+...+.|..+..
T Consensus 110 ~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 110 HCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred HHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 34667777777777 35533222233333445555444
No 239
>PF03923 Lipoprotein_16: Uncharacterized lipoprotein; InterPro: IPR005619 The function of this presumed lipoprotein is unknown. The family includes Escherichia coli YajG P36671 from SWISSPROT.
Probab=32.70 E-value=49 Score=18.67 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=12.8
Q ss_pred HHHHHHHHHhCChhhhhcC
Q psy381 52 NIYDALITVLEDPIFQFFL 70 (70)
Q Consensus 52 ~l~~~i~~~l~~~~~~~~l 70 (70)
.+...+.++++|+++...|
T Consensus 140 ~l~~~l~~i~~D~el~~~l 158 (159)
T PF03923_consen 140 LLSDVLNDIANDPELIQFL 158 (159)
T ss_pred HHHHHHHHHHcCHHHHHHh
Confidence 4566667777888877653
No 240
>PRK10736 hypothetical protein; Provisional
Probab=32.59 E-value=1.5e+02 Score=19.60 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCceeeecCCCCh--HHHHHHHHHhCceeEecCCCCCHHHHHHHH
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQ--DLNAQRIAKIKTGVVLEFDNLNEDNIYDAL 57 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq--~~na~~~~~~g~g~~~~~~~~~~~~l~~~i 57 (70)
..|.-.|+-.|.++.++|-..+. ..=+..+-+.| +..+. +.+++.+.+
T Consensus 234 liTA~~Al~~gR~VfavPG~i~~~~s~G~n~LI~~G-A~lv~----~~~Di~~~l 283 (374)
T PRK10736 234 LVTARCALEQGRDVFALPGPIGNPGSEGPHWLIKQG-AYLVT----SPEDILENL 283 (374)
T ss_pred HHHHHHHHHhCCeEEEEcCCCCCccchhHHHHHHCC-CEEeC----CHHHHHHHh
Confidence 57788899999999999964332 33444555667 44444 455555555
No 241
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=32.56 E-value=14 Score=25.89 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCc---eeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 6 QSLQEAFHYGVK---LICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 6 ~t~~e~l~~g~P---~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
..+.|++++++| .+++.-+.-- +. +..-|+.+++. +++.+.++|.+++..+
T Consensus 376 lv~~Eama~~~~~~g~~vls~~~G~---~~---~l~~~llv~P~--d~~~la~ai~~~l~~~ 429 (726)
T PRK14501 376 LVAKEYVASRTDGDGVLILSEMAGA---AA---ELAEALLVNPN--DIEGIAAAIKRALEMP 429 (726)
T ss_pred cccceEEEEcCCCCceEEEecccch---hH---HhCcCeEECCC--CHHHHHHHHHHHHcCC
Confidence 456888889765 2333221110 11 11236777754 5899999999998753
No 242
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=32.35 E-value=83 Score=17.15 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=3.6
Q ss_pred hCceeEe
Q psy381 37 IKTGVVL 43 (70)
Q Consensus 37 ~g~g~~~ 43 (70)
-.+|+++
T Consensus 59 ~digIIl 65 (115)
T TIGR01101 59 DDIAIIL 65 (115)
T ss_pred CCeEEEE
Confidence 4555554
No 243
>PHA02975 hypothetical protein; Provisional
Probab=32.33 E-value=36 Score=16.95 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=18.1
Q ss_pred eeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 40 GVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 40 g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
|+-+...+-+-+++.+.++.+|.|+
T Consensus 10 GvFmsS~DdDF~nFI~vVksVLtdk 34 (69)
T PHA02975 10 GVFLESNDSDFEDFIDTIMHVLTGK 34 (69)
T ss_pred HhhcCCChHHHHHHHHHHHHHHcCC
Confidence 4555544446788899999999884
No 244
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=32.07 E-value=72 Score=15.79 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=25.5
Q ss_pred hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHH
Q psy381 14 YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALI 58 (70)
Q Consensus 14 ~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~ 58 (70)
...|+|++--..+.......+ +.|+--.+. +.++.++|.++|+
T Consensus 70 ~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~-kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 PSIPIIVVTDEDDSDEVQEAL-RAGADDYLS-KPFSPEELRAAIN 112 (112)
T ss_dssp TTSEEEEEESSTSHHHHHHHH-HTTESEEEE-SSSSHHHHHHHHH
T ss_pred ccccEEEecCCCCHHHHHHHH-HCCCCEEEE-CCCCHHHHHHhhC
Confidence 467888776444433333333 666655554 3457888887764
No 245
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=31.72 E-value=30 Score=21.87 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=29.7
Q ss_pred CcHHHHH--HHHHhCCceeeecCCCChHHHHHH-HHHhCce
Q psy381 3 GGLQSLQ--EAFHYGVKLICIPMFGDQDLNAQR-IAKIKTG 40 (70)
Q Consensus 3 gG~~t~~--e~l~~g~P~l~~P~~~dq~~na~~-~~~~g~g 40 (70)
||+|+++ -|-.+|+-++.+-+..+|..+++. +.+.|+.
T Consensus 81 CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 6666554 444558999999999999998887 6668887
No 246
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=31.64 E-value=1.3e+02 Score=18.54 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=32.6
Q ss_pred hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 14 YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 14 ~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
...+++++ -..-+..+.+.|.-.++-.+..+.+.|..++.++++.|
T Consensus 218 ~~~~~v~i-----s~rtA~~a~~~G~~~v~vA~~~~~~~l~~a~~~~~~~~ 263 (266)
T PRK08811 218 QQRPVVAS-----SDRLLDAAHAAGFIHVMRAAGPLPAQLAAAAAAIMTPP 263 (266)
T ss_pred hCCCEEEe-----CHHHHHHHHHcCCCceeeCCCCCHHHHHHHHHhhcCCC
Confidence 35555554 13556777888877666666779999999999998743
No 247
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=31.61 E-value=49 Score=18.74 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.2
Q ss_pred HHHHHHH-HhCCceeeec
Q psy381 6 QSLQEAF-HYGVKLICIP 22 (70)
Q Consensus 6 ~t~~e~l-~~g~P~l~~P 22 (70)
+.+.++. ..++|++++-
T Consensus 74 ~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 74 NALASLNKTYGIPLPILA 91 (157)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 5677888 9999999985
No 248
>PLN02727 NAD kinase
Probab=31.60 E-value=1.6e+02 Score=22.21 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHh----CCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 3 GGLQSLQEAFHY----GVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 3 gG~~t~~e~l~~----g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||-||++.+... ++|++.+-... +|-. .+.+++++.+.|.+++.+
T Consensus 751 GGDGTlLrAar~~~~~~iPILGINlGr-------------LGFL---Tdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 751 GGDGVILHASNLFRGAVPPVVSFNLGS-------------LGFL---TSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEeCCC-------------cccc---ccCCHHHHHHHHHHHHcC
Confidence 566777666543 45666664311 1211 234567777777777654
No 249
>PRK13695 putative NTPase; Provisional
Probab=31.45 E-value=1e+02 Score=17.27 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=29.2
Q ss_pred HHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHH
Q psy381 8 LQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60 (70)
Q Consensus 8 ~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 60 (70)
+.+++..|.|+|++-+...=...+.++..+-=|.++....-+++.+.+.|.+.
T Consensus 119 l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 119 VEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred HHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 44556778888887543211234555555433444443444677777766654
No 250
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=31.40 E-value=78 Score=21.53 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=30.3
Q ss_pred hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHH
Q psy381 14 YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALIT 59 (70)
Q Consensus 14 ~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~ 59 (70)
.|+|+|-..-..-=..+-..+++.|.+..+.....+.++|...+++
T Consensus 361 pGiP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~ 406 (470)
T TIGR03852 361 PGIPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKR 406 (470)
T ss_pred CCCceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhh
Confidence 4888888643221223445566678888888888888887766643
No 251
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=31.30 E-value=1.1e+02 Score=19.89 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=32.4
Q ss_pred CceeeecC-CCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHH
Q psy381 16 VKLICIPM-FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60 (70)
Q Consensus 16 ~P~l~~P~-~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 60 (70)
.|+..-+. ...-..-++++.++|+-+++....++.++|.+..+++
T Consensus 114 l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 114 LPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred CcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 44444443 2334566778888998888888889999999888775
No 252
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=30.68 E-value=1.6e+02 Score=21.08 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHhCCceeeecC-------CCChHHH------------HHHHHH----hCceeEecCCCCCHHHHHHHHH
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM-------FGDQDLN------------AQRIAK----IKTGVVLEFDNLNEDNIYDALI 58 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~-------~~dq~~n------------a~~~~~----~g~g~~~~~~~~~~~~l~~~i~ 58 (70)
|.|...+..|++.+.+++++=+ .+.|+.- +..+++ .|+..+-..+-.+.+++.++++
T Consensus 459 HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~k 538 (640)
T COG4231 459 HSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIK 538 (640)
T ss_pred ccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHH
Confidence 8899999999999999988754 3455432 111222 3444333333467888899998
Q ss_pred HHhCC
Q psy381 59 TVLED 63 (70)
Q Consensus 59 ~~l~~ 63 (70)
+.++-
T Consensus 539 eale~ 543 (640)
T COG4231 539 EALEV 543 (640)
T ss_pred HHhcC
Confidence 88764
No 253
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=30.51 E-value=54 Score=18.89 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhCChhhhh
Q psy381 51 DNIYDALITVLEDPIFQF 68 (70)
Q Consensus 51 ~~l~~~i~~~l~~~~~~~ 68 (70)
..+.+.+++++.|+..++
T Consensus 132 ~~~r~~l~~~l~~~~~~~ 149 (157)
T PF05591_consen 132 PAFRKLLQEILSDPEALE 149 (157)
T ss_pred HHHHHHHHHHHCCHHHHH
Confidence 445555555555554443
No 254
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=30.28 E-value=1.1e+02 Score=17.48 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=30.7
Q ss_pred hCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 14 YGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 14 ~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
..+|+|++-...+ ......+.+.|+--.+. +..+++.|..+|+.++...
T Consensus 79 ~~~~iIvls~~~~-~~~~~~a~~~Ga~~yl~-K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 79 PSLSIIVLTMNNN-PAILSAVLDLDIEGIVL-KQGAPTDLPKALAALQKGK 127 (216)
T ss_pred CCCcEEEEEecCC-HHHHHHHHHCCCeEEEE-CCCCHHHHHHHHHHHHCCC
Confidence 4577887754443 33344555566644444 2447899999999887654
No 255
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=29.87 E-value=36 Score=11.60 Aligned_cols=12 Identities=42% Similarity=0.589 Sum_probs=8.2
Q ss_pred HHHHHHHHHhCC
Q psy381 5 LQSLQEAFHYGV 16 (70)
Q Consensus 5 ~~t~~e~l~~g~ 16 (70)
.-|+.|++..|.
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 356788887764
No 256
>PLN02929 NADH kinase
Probab=29.66 E-value=1.4e+02 Score=19.17 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHH---hCCceeeecCCCC------hHHHHHHHHH-hCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 2 QGGLQSLQEAFH---YGVKLICIPMFGD------QDLNAQRIAK-IKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 2 hgG~~t~~e~l~---~g~P~l~~P~~~d------q~~na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
-||-||++.+.. .++|++.+-.... ++.|. +.+ .-.|-.. ..+++++.+.+.+++++
T Consensus 71 lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~--~~~~r~lGfL~---~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 71 VGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDE--FDARRSTGHLC---AATAEDFEQVLDDVLFG 137 (301)
T ss_pred ECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccc--cccccCccccc---cCCHHHHHHHHHHHHcC
Confidence 378888888744 3689998865321 22222 111 1244333 23678888899988865
No 257
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=29.55 E-value=76 Score=16.55 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=15.0
Q ss_pred CcHHHHHHH---HHhCCceeeecC
Q psy381 3 GGLQSLQEA---FHYGVKLICIPM 23 (70)
Q Consensus 3 gG~~t~~e~---l~~g~P~l~~P~ 23 (70)
.+.||.+|. .+.|+|++++-.
T Consensus 74 ~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 74 PDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp --HHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCCcHHHHHHHHHHCCCEEEEEEc
Confidence 357888886 556999999854
No 258
>PLN02884 6-phosphofructokinase
Probab=29.51 E-value=54 Score=21.84 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.7
Q ss_pred CCcHHHHHHHHHhC-CceeeecC
Q psy381 2 QGGLQSLQEAFHYG-VKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~g-~P~l~~P~ 23 (70)
|+|+-++.-+++.| .-++.+|-
T Consensus 229 ~aG~LAl~aalA~g~ad~ilIPE 251 (411)
T PLN02884 229 SSGFIAMHASLASGQVDICLIPE 251 (411)
T ss_pred CHHHHHHHHHHhcCCCCEEEeCC
Confidence 78999999999999 78888886
No 259
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=29.42 E-value=54 Score=17.18 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHhCChhh
Q psy381 49 NEDNIYDALITVLEDPIF 66 (70)
Q Consensus 49 ~~~~l~~~i~~~l~~~~~ 66 (70)
+++++.+++++++.+++|
T Consensus 28 ~~ee~~~~l~~l~~~~d~ 45 (100)
T PRK03957 28 NPEEAKNAIKELVENDEI 45 (100)
T ss_pred CHHHHHHHHHHHhhCCCe
Confidence 568999999999876654
No 260
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=29.40 E-value=60 Score=18.29 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCceeeec
Q psy381 6 QSLQEAFHYGVKLICIP 22 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P 22 (70)
+.+.+|...++|+|++.
T Consensus 76 ~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 76 NGIAGAYAEHVPVVHIV 92 (162)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 56788999999999995
No 261
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=29.27 E-value=41 Score=19.47 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=13.2
Q ss_pred HHHHHHHhCCceeeecC
Q psy381 7 SLQEAFHYGVKLICIPM 23 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~ 23 (70)
+..=++.+|+|.+.+.+
T Consensus 268 ~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 35567888999999865
No 262
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=29.21 E-value=40 Score=16.95 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=18.7
Q ss_pred ceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 39 TGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 39 ~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
.|+-+...+-+-+.+.+.++.++.|++
T Consensus 9 fGvFmss~ddDf~~Fi~vVksVltdk~ 35 (72)
T PF12575_consen 9 FGVFMSSSDDDFNNFINVVKSVLTDKK 35 (72)
T ss_pred HhhhcCCCHHHHHHHHHHHHHHHcCCc
Confidence 355555444467888899999998753
No 263
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=28.87 E-value=61 Score=20.56 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred CCcHHHHHHHHHhCCceeeecC
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~ 23 (70)
|+||-++.-+++.|.-++.+|-
T Consensus 171 ~~G~lAl~~~la~gad~iliPE 192 (301)
T TIGR02482 171 HAGDLALYSGIATGAEIIIIPE 192 (301)
T ss_pred CHHHHHHHHHHHcCCCEEEECC
Confidence 6899999999999988999986
No 264
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=28.53 E-value=52 Score=19.07 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhCChhhhh
Q psy381 50 EDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 50 ~~~l~~~i~~~l~~~~~~~ 68 (70)
...+++.+++++.|+..++
T Consensus 132 ~~~~~~~l~~~l~d~~~~~ 150 (159)
T TIGR03358 132 NPDLRKLLQELLKDKDLLE 150 (159)
T ss_pred cHHHHHHHHHHHCCHHHHH
Confidence 3455555555555554443
No 265
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=28.30 E-value=1.2e+02 Score=17.10 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCcHHHHHHHHHhCCceeeecCCCChHHHHHH--HHHhCceeEe------------cCCCCCHHHHHHHHHHH
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQR--IAKIKTGVVL------------EFDNLNEDNIYDALITV 60 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~~dq~~na~~--~~~~g~g~~~------------~~~~~~~~~l~~~i~~~ 60 (70)
++|......+...|-|++.+ .--+.++.. ++..|+-.-+ ...+++.|++.+.+..+
T Consensus 54 g~gv~~l~~~arsgrrIlal---DGCp~~Catk~l~~AGv~~D~~l~itdlGikK~~~~D~~~edv~kv~~~i 123 (135)
T COG4273 54 GAGVPALVDAARSGRRILAL---DGCPLRCATKCLAEAGVQADVHLTITDLGIKKTYPSDCKDEDVEKVARTI 123 (135)
T ss_pred cCCcHHHHHHhhcCCceEEe---cCChHHHHHHHHHHhccceeEEEEehhcccccCCCCCCCHHHHHHHHHHH
Confidence 56777788888889999987 223344333 4444432211 12566777766655544
No 266
>PHA02698 hypothetical protein; Provisional
Probab=28.20 E-value=54 Score=16.71 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHhCChhhhh
Q psy381 46 DNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 46 ~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
...++++...++.+.++|-.|+.
T Consensus 39 ~~CsPEdMs~mLD~FLediq~ks 61 (89)
T PHA02698 39 PQCSPEDMSDMLDNFLEDIQYKS 61 (89)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 45788899999988887766553
No 267
>KOG3729|consensus
Probab=27.98 E-value=51 Score=23.19 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=15.4
Q ss_pred HHHHHHhCCceeeecCCCCh
Q psy381 8 LQEAFHYGVKLICIPMFGDQ 27 (70)
Q Consensus 8 ~~e~l~~g~P~l~~P~~~dq 27 (70)
.+++-..|.|++++|.+..+
T Consensus 150 l~~a~~tg~PliFlPlHRSH 169 (715)
T KOG3729|consen 150 LYEAEQTGIPMVFLPLHRSH 169 (715)
T ss_pred HHHHhhcCCceEEEecchhh
Confidence 46667779999999996543
No 268
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=27.83 E-value=46 Score=20.18 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=11.5
Q ss_pred HHHHHHHHhC-Cceeee
Q psy381 6 QSLQEAFHYG-VKLICI 21 (70)
Q Consensus 6 ~t~~e~l~~g-~P~l~~ 21 (70)
-.++|++.+| +|+|+-
T Consensus 251 ~Rl~eal~~GcIPVii~ 267 (302)
T PF03016_consen 251 RRLYEALAAGCIPVIIS 267 (302)
T ss_pred chHHHHhhhceeeEEec
Confidence 4578898887 577763
No 269
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=27.81 E-value=75 Score=19.08 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHhCChhhhhc
Q psy381 47 NLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 47 ~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
+-++++-.+.|.++|.++.|.++
T Consensus 51 d~~~~kr~~lVd~LL~sp~y~e~ 73 (208)
T PF07583_consen 51 DPSPDKREKLVDRLLASPEYAER 73 (208)
T ss_pred CCChhHHHHHHHHHHCCcHHHHH
Confidence 34678888999999999988764
No 270
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.71 E-value=56 Score=19.16 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhCChhhhh
Q psy381 51 DNIYDALITVLEDPIFQF 68 (70)
Q Consensus 51 ~~l~~~i~~~l~~~~~~~ 68 (70)
..+++.|.++|.|++.++
T Consensus 138 ~~~e~~l~~lL~n~~~l~ 155 (169)
T COG3516 138 PAFEELLQDLLKNEELLQ 155 (169)
T ss_pred HHHHHHHHHHHcCHHHHH
Confidence 345555555555555444
No 271
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.71 E-value=57 Score=21.05 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCChhhhhc
Q psy381 51 DNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 51 ~~l~~~i~~~l~~~~~~~~ 69 (70)
+.+.+++++++.+++++++
T Consensus 263 ~~~~~a~kk~l~s~e~~~~ 281 (319)
T COG3181 263 AKLSAALKKALASPEWQKR 281 (319)
T ss_pred HHHHHHHHHHhcCHHHHHH
Confidence 4588899999999998875
No 272
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=27.20 E-value=75 Score=18.81 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCceeeecCC
Q psy381 6 QSLQEAFHYGVKLICIPMF 24 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~ 24 (70)
+..+|+...|+|.|.+-..
T Consensus 116 gAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 116 GAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEecc
Confidence 5578999999999999763
No 273
>PHA02650 hypothetical protein; Provisional
Probab=26.97 E-value=48 Score=16.98 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=18.0
Q ss_pred eeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 40 GVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 40 g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
|+-+...+-+-+++.+.++.+|.|+
T Consensus 10 GVFmsS~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 10 GVFMSSTDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred hhhcCCcHHHHHHHHHHHHHHHcCC
Confidence 4555544446788899999999884
No 274
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=26.81 E-value=95 Score=19.42 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHhCceeEe
Q psy381 25 GDQDLNAQRIAKIKTGVVL 43 (70)
Q Consensus 25 ~dq~~na~~~~~~g~g~~~ 43 (70)
.|-..+++.++++|+|.++
T Consensus 155 ~d~~~Wa~~~e~~GAGEIl 173 (256)
T COG0107 155 LDAVEWAKEVEELGAGEIL 173 (256)
T ss_pred cCHHHHHHHHHHcCCceEE
Confidence 5667899999999999876
No 275
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=26.80 E-value=1.8e+02 Score=18.68 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred CCcHHHHHHHHHhCCceeeecC
Q psy381 2 QGGLQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~ 23 (70)
|+|+.++.-+++.|.-.+.+|-
T Consensus 173 ~~G~LAl~~ala~~a~~iliPE 194 (324)
T TIGR02483 173 HAGWIALHSGIAGGADVILIPE 194 (324)
T ss_pred ChhHHHHHHHhccCCCEEEecC
Confidence 6899999999999999999986
No 276
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=26.64 E-value=62 Score=15.55 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCceeee
Q psy381 6 QSLQEAFHYGVKLICI 21 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~ 21 (70)
.-+.|+...|.|++.+
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4578999999999765
No 277
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.55 E-value=1.2e+02 Score=20.18 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCceeeecCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCChhhhh
Q psy381 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
.+-+.|++.+|.|++.=++.. .+.+-.-|=.+++-. +.+++.+.++.++.-++.|+
T Consensus 277 ~~RvFeiagc~~~liT~~~~~-----~e~~f~pgk~~iv~~---d~kdl~~~~~yll~h~~erk 332 (373)
T COG4641 277 TNRVFEIAGCGGFLITDYWKD-----LEKFFKPGKDIIVYQ---DSKDLKEKLKYLLNHPDERK 332 (373)
T ss_pred hhhHHHHhhcCCccccccHHH-----HHHhcCCchheEEec---CHHHHHHHHHHHhcCcchHH
Confidence 356788888888777654311 111111122222221 56777777777776654443
No 278
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.19 E-value=1.2e+02 Score=16.28 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=22.5
Q ss_pred HHHHHhCceeEec--CCCCCHHHHHHHHHHHhCChh
Q psy381 32 QRIAKIKTGVVLE--FDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 32 ~~~~~~g~g~~~~--~~~~~~~~l~~~i~~~l~~~~ 65 (70)
+.+++.|+..... ..+.+.+++.+.|.++=.|++
T Consensus 52 k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~ 87 (117)
T PF00763_consen 52 KAAEKLGIEFELIELPEDISEEELLELIEKLNEDPS 87 (117)
T ss_dssp HHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT
T ss_pred HHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCC
Confidence 4466678765442 256789999999999877664
No 279
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.04 E-value=2.1e+02 Score=19.17 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=37.4
Q ss_pred HHHHHHhCCceeeecCC-CChHHHHHHHHHh-CceeEecCCCCCHHHHHHHHHHHhC
Q psy381 8 LQEAFHYGVKLICIPMF-GDQDLNAQRIAKI-KTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 8 ~~e~l~~g~P~l~~P~~-~dq~~na~~~~~~-g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
+.+.+...+|++.-|+. .-...-|..+.+. |+|++ . ...+++++.+.|+++-.
T Consensus 35 lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI-~-~~~~~e~l~~eI~~vk~ 89 (404)
T PRK06843 35 LTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGII-H-KNMSIEAQRKEIEKVKT 89 (404)
T ss_pred hhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEe-c-CCCCHHHHHHHHHHHHh
Confidence 45677789999998873 2335556666665 56754 4 36789999999988764
No 280
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=25.88 E-value=1.4e+02 Score=18.66 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCceeeecCC
Q psy381 5 LQSLQEAFHYGVKLICIPMF 24 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~~ 24 (70)
-+..+|+...|+|.|.+-+.
T Consensus 107 VaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 107 VAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HHHHHHHHHcCccceeeeeh
Confidence 35679999999999999763
No 281
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=25.26 E-value=2.4e+02 Score=19.54 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHHHHhCCceeeecCCCC-----hHHHHHHHHH-hCce-eEecCCCCCHHHHHHHHHHHhCC
Q psy381 7 SLQEAFHYGVKLICIPMFGD-----QDLNAQRIAK-IKTG-VVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~~d-----q~~na~~~~~-~g~g-~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
.+.|.-..++|++++=...| ...-+..+++ +++- +.+.-.+++.+++...++++|-.
T Consensus 172 ~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 172 VIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred HHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 45666777999999843222 2222334434 5765 34555678899999999988743
No 282
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=25.09 E-value=1.1e+02 Score=15.81 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=28.0
Q ss_pred HHHHHHHhCcee---EecCCCCCHHHHHHHHHHHhCChhhhhc
Q psy381 30 NAQRIAKIKTGV---VLEFDNLNEDNIYDALITVLEDPIFQFF 69 (70)
Q Consensus 30 na~~~~~~g~g~---~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 69 (70)
...++...|+.+ .-...+++.+++...+..+...+.+++.
T Consensus 42 RtHRLi~rGa~lEsi~~e~~~lT~~E~~~ll~~~~~~~~~~~~ 84 (86)
T PF12958_consen 42 RTHRLIERGAILESIFPEPKDLTNDEFYELLEFLFHLPEVQEA 84 (86)
T ss_pred HHHHHHHhhHHHHHHhhcchhcCHHHHHHHHHHHHcCHHHHHh
Confidence 344555566543 3345778999999999999888877754
No 283
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=25.08 E-value=1.9e+02 Score=18.49 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHhCCceeeecCC-CChHHHHHHHH----H-hCceeEecC-CCCCHHHHHHHHHHHh
Q psy381 2 QGGLQSLQEAFHYGVKLICIPMF-GDQDLNAQRIA----K-IKTGVVLEF-DNLNEDNIYDALITVL 61 (70)
Q Consensus 2 hgG~~t~~e~l~~g~P~l~~P~~-~dq~~na~~~~----~-~g~g~~~~~-~~~~~~~l~~~i~~~l 61 (70)
|+||-++.-+++.|.-.+.+|-. .+...-...+. + .+.++++-. +-.+.+.+.+.+++.+
T Consensus 171 ~~G~LA~~~ala~ga~~iliPE~~~~~~~~~~~i~~~~~~g~~~~vivvaEG~~~~~~l~~~l~~~~ 237 (317)
T cd00763 171 HCGDIALAAGIAGGAEFIVIPEAEFDREEVANRIKAGIERGKKHAIVVVAEGVYDVDELAKEIEEAT 237 (317)
T ss_pred ChHHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEeCCCCCHHHHHHHHHHHh
Confidence 78999999999999889999862 33332222222 2 455655433 3335667777666544
No 284
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.98 E-value=1.4e+02 Score=16.69 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 27 QDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 27 q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
+..-...+.+.|+..++.++. +.+++.+.+++.|+
T Consensus 99 ~~~~~~~l~~~Gv~~vF~pgt-~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 99 FPDVEKRFKEMGFDRVFAPGT-PPEVVIADLKKDLN 133 (134)
T ss_pred hHHHHHHHHHcCCCEEECcCC-CHHHHHHHHHHHhc
Confidence 333345678889888887665 78888888887663
No 285
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=24.81 E-value=67 Score=20.12 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHhC-Chhhh
Q psy381 49 NEDNIYDALITVLE-DPIFQ 67 (70)
Q Consensus 49 ~~~~l~~~i~~~l~-~~~~~ 67 (70)
+++.+.++.+++|. +++|+
T Consensus 222 ~p~~VA~~f~evL~~~~ef~ 241 (266)
T TIGR02452 222 DPAEVAKIFHDLLSPGGIFK 241 (266)
T ss_pred CHHHHHHHHHHHhccCcccc
Confidence 78999999999997 55443
No 286
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=24.80 E-value=1.8e+02 Score=17.87 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=10.7
Q ss_pred CCceeeecCCCChHHHHHHHHHhCc
Q psy381 15 GVKLICIPMFGDQDLNAQRIAKIKT 39 (70)
Q Consensus 15 g~P~l~~P~~~dq~~na~~~~~~g~ 39 (70)
|.++.++-...+....+.++.++|+
T Consensus 245 Gl~v~~WTv~~n~~~~~~~l~~~GV 269 (286)
T cd08606 245 GLVCVSYGVLNNDPENAKTQVKAGV 269 (286)
T ss_pred CcEEEEECCccCCHHHHHHHHHcCC
Confidence 4444443322233444445555555
No 287
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=24.75 E-value=86 Score=14.29 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhCCh
Q psy381 50 EDNIYDALITVLEDP 64 (70)
Q Consensus 50 ~~~l~~~i~~~l~~~ 64 (70)
.+++..+|+++|.+.
T Consensus 2 d~~i~~~i~~iL~~~ 16 (54)
T PF08766_consen 2 DEEIREAIREILREA 16 (54)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 355666666666543
No 288
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.68 E-value=1.9e+02 Score=18.27 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=34.4
Q ss_pred HHHHHHHhCCceeeecCCC-ChHHHHHHHHHh-CceeEecCCCCCHHHHHHHHHHHh
Q psy381 7 SLQEAFHYGVKLICIPMFG-DQDLNAQRIAKI-KTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 7 t~~e~l~~g~P~l~~P~~~-dq~~na~~~~~~-g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
.+.+.+-...|++.-|+.. --..-+..+.+. |+|. +.....+++.+.+.|+++-
T Consensus 3 ~l~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~-l~~~~~~~~~l~~~i~~~~ 58 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGI-IGAGNAPPDVVRKEIRKVK 58 (307)
T ss_pred hhhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcce-eccccCCHHHHHHHHHHHH
Confidence 3566777789999988743 224445555554 4554 3334557888888887764
No 289
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=24.58 E-value=82 Score=19.62 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCceeeecC
Q psy381 5 LQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~ 23 (70)
-+..+|+...|+|.|.+-.
T Consensus 115 VgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 115 VAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHHHHHHcCCCeEEEEc
Confidence 4667999999999999976
No 290
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=24.37 E-value=55 Score=17.90 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=18.1
Q ss_pred eEecCCCCCHHHHHHHHHHHhCChhh
Q psy381 41 VVLEFDNLNEDNIYDALITVLEDPIF 66 (70)
Q Consensus 41 ~~~~~~~~~~~~l~~~i~~~l~~~~~ 66 (70)
.++...-....++...+.+++.|++.
T Consensus 73 ~iv~g~v~~g~~~~~~l~~~fa~p~V 98 (117)
T PF06718_consen 73 RIVTGRVVEGADIEARLAELFADPEV 98 (117)
T ss_pred CEEeeeEEcchhHHHHHHHHhcCCCc
Confidence 33433334567799999999999864
No 291
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=24.28 E-value=84 Score=19.46 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCceeeecC
Q psy381 5 LQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~ 23 (70)
-+..+|+...|+|.|.+..
T Consensus 106 VgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 106 VAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HHHHHHHHhcCCCeEEEec
Confidence 3667999999999999986
No 292
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=23.79 E-value=96 Score=17.44 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCceeeecC
Q psy381 5 LQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~ 23 (70)
.+.+.++...+.|+|++.-
T Consensus 80 ~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 80 LTGLANAYADRIPVLVITG 98 (172)
T ss_dssp HHHHHHHHHTT-EEEEEEE
T ss_pred HHHHhhcccceeeEEEEec
Confidence 3667889999999999853
No 293
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=23.78 E-value=1.2e+02 Score=15.77 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCceee-ecCCCChHHHH-HHH-HHhCceeEecCCCCCHHHHHHHHHHHh
Q psy381 6 QSLQEAFHYGVKLIC-IPMFGDQDLNA-QRI-AKIKTGVVLEFDNLNEDNIYDALITVL 61 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~-~P~~~dq~~na-~~~-~~~g~g~~~~~~~~~~~~l~~~i~~~l 61 (70)
-|+.-....|+.... ++ ..++...+ +.+ .+-.+|+++-.++ -.+.+.+.+++++
T Consensus 10 dtv~GFrLaGi~~~~~~~-~~ee~~~~l~~l~~~~d~gII~Ite~-~~~~i~e~i~~~~ 66 (100)
T PRK02228 10 EFTTGFRLAGIRKVYEVP-DDEKLDEAVEEVLEDDDVGILVMHDD-DLEKLPRRLRRTL 66 (100)
T ss_pred HHHHHHHHcCCceEEeeC-CHHHHHHHHHHHhhCCCEEEEEEehh-HhHhhHHHHHHHH
Confidence 355556667776443 22 11222222 223 4556787764322 2444555565544
No 294
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=23.60 E-value=83 Score=19.74 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCceeeecC
Q psy381 5 LQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~ 23 (70)
-+..+|+..+|+|.|.+-.
T Consensus 109 VgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 109 LGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred HHHHHHHHhcCCCEEEEec
Confidence 3567999999999999986
No 295
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.46 E-value=48 Score=19.21 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=21.4
Q ss_pred cCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 22 PMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 22 P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
||......+|+.+.+.--.+.-+ ..+.|.+.+.+++.|
T Consensus 79 PWt~~~L~aa~el~ee~eeLs~d----eke~~~~sl~dL~~d 116 (158)
T PF10083_consen 79 PWTENALEAANELIEEDEELSPD----EKEQFKESLPDLTKD 116 (158)
T ss_pred chHHHHHHHHHHHHHHhhcCCHH----HHHHHHhhhHHHhhc
Confidence 44445556666666522221111 456788888888766
No 296
>PRK14072 6-phosphofructokinase; Provisional
Probab=23.39 E-value=2e+02 Score=19.17 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.3
Q ss_pred CCcHHHHHHHHH-----hCCceeeecCC
Q psy381 2 QGGLQSLQEAFH-----YGVKLICIPMF 24 (70)
Q Consensus 2 hgG~~t~~e~l~-----~g~P~l~~P~~ 24 (70)
|+||.++.-+++ .|.-++.+|-.
T Consensus 191 ~aG~LAl~a~lA~~~~~~gad~iliPE~ 218 (416)
T PRK14072 191 HAGWLAAAAALAKQNPDDAPHLIYLPER 218 (416)
T ss_pred chhHHHHHHhhccccCCCCccEEEccCC
Confidence 789999999999 88899999863
No 297
>PHA02844 putative transmembrane protein; Provisional
Probab=23.37 E-value=67 Score=16.25 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=18.1
Q ss_pred eeEecCCCCCHHHHHHHHHHHhCCh
Q psy381 40 GVVLEFDNLNEDNIYDALITVLEDP 64 (70)
Q Consensus 40 g~~~~~~~~~~~~l~~~i~~~l~~~ 64 (70)
|+-+...+-+-+++.+.++.+|.|+
T Consensus 10 GVFmsS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 10 GVFLSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhhcCCchHHHHHHHHHHHHHHcCC
Confidence 4555544446788899999999885
No 298
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=23.35 E-value=1.7e+02 Score=17.27 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=29.7
Q ss_pred HhCCceeeecCCCChH----HHHHHHH-HhCceeE-ecCCCC---------CHHHHHHHHHHHhCChhh
Q psy381 13 HYGVKLICIPMFGDQD----LNAQRIA-KIKTGVV-LEFDNL---------NEDNIYDALITVLEDPIF 66 (70)
Q Consensus 13 ~~g~P~l~~P~~~dq~----~na~~~~-~~g~g~~-~~~~~~---------~~~~l~~~i~~~l~~~~~ 66 (70)
..++|+++.|...+.. .|-..+. ..|+=++ +.+++. .-+.+.+++...+.+..+
T Consensus 114 ke~rPlvlaPamN~~m~~~~~Ni~~L~~~~g~~~v~f~qd~~~~k~~s~~~~~~~~~~~~~~a~~~~q~ 182 (187)
T TIGR02852 114 RNNKPVVLAISTNDALGLNAVNLMRLLNTKNIYFVPFGQDDPFKKPNSLVAKMDYLIPTIEEALQGRQL 182 (187)
T ss_pred cCCCCEEEEECcCHHHHhCHHHHHHHHHcCCEEEEeecCCCCCCCchhHHhhHHhhHHHHHHHHhCCCc
Confidence 4599999999866553 4555543 4554332 222221 223456666666655443
No 299
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=23.28 E-value=48 Score=16.92 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=17.8
Q ss_pred hCceeEecCCCCCHHHHHHHHHHHhCChh
Q psy381 37 IKTGVVLEFDNLNEDNIYDALITVLEDPI 65 (70)
Q Consensus 37 ~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 65 (70)
.|+...... .+++++.+++++++.+++
T Consensus 16 aGv~~~~~~--~~~ee~~~~l~~l~~~~~ 42 (95)
T PF01990_consen 16 AGVEGVYVN--TDPEEAEEALKELLKDED 42 (95)
T ss_dssp TTSEEEEES--HSHHHHHHHHHHHHHHTT
T ss_pred cCCCCccCC--CCHHHHHHHHHHHhcCCC
Confidence 455444331 268999999999986544
No 300
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=23.10 E-value=2e+02 Score=18.04 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=12.8
Q ss_pred HHHhCCceeeecCCCChHHH
Q psy381 11 AFHYGVKLICIPMFGDQDLN 30 (70)
Q Consensus 11 ~l~~g~P~l~~P~~~dq~~n 30 (70)
+-.+|||++++- +|+..-
T Consensus 143 Ag~~gVPV~lvs--GD~~~~ 160 (263)
T cd08770 143 AAYLGVPVVFVS--GDAGLC 160 (263)
T ss_pred HhhcCCCEEEEe--cCHHHH
Confidence 456799999994 666543
No 301
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=23.06 E-value=2.2e+02 Score=18.33 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCceeeecCC------CChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhC
Q psy381 6 QSLQEAFHYGVKLICIPMF------GDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P~~------~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 62 (70)
..+.++...|+|++.+..- ...+.....+.+.| + +...++++++-.-.+.-+|.
T Consensus 255 ~~l~~a~~~Gi~VV~~Sq~~~G~v~~~~Y~~g~~l~~~G--~-i~~g~lt~e~A~~kL~~~L~ 314 (336)
T TIGR00519 255 QELQEASDRGVVVVMTTQCLNGRVNMNVYSTGRRLLQAG--V-IGGEDMLPEVALVKLMWLLG 314 (336)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCccCcccccchhhHHhCC--E-EECCCCCHHHHHHHHHHHHc
Confidence 3456777779999997541 12233445555544 3 55578888887766666664
No 302
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=22.88 E-value=96 Score=19.07 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCceeeecC
Q psy381 5 LQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~ 23 (70)
-+..+|+...|+|.|.+-.
T Consensus 110 VgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 110 VGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHHHHHHHHcCCCeEEEEe
Confidence 3667999999999999976
No 303
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=22.84 E-value=91 Score=19.43 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCceeeecC
Q psy381 5 LQSLQEAFHYGVKLICIPM 23 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~P~ 23 (70)
-+..+|+..+|+|.|.+-.
T Consensus 111 VgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 111 VGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHHHHHHhcCCCeEEEEe
Confidence 3567999999999999975
No 304
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=22.81 E-value=1e+02 Score=14.44 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHhCC
Q psy381 48 LNEDNIYDALITVLED 63 (70)
Q Consensus 48 ~~~~~l~~~i~~~l~~ 63 (70)
+++++|.++|+++-++
T Consensus 32 vt~~~L~~AV~~vG~~ 47 (57)
T PF12244_consen 32 VTEEQLREAVRAVGNS 47 (57)
T ss_pred cCHHHHHHHHHHHCcC
Confidence 4789999999988665
No 305
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=22.52 E-value=2.1e+02 Score=17.86 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHhCChhh
Q psy381 48 LNEDNIYDALITVLEDPIF 66 (70)
Q Consensus 48 ~~~~~l~~~i~~~l~~~~~ 66 (70)
...+++.+.+.++++ .+|
T Consensus 96 ~~~~~~~~~~~~~~~-~~~ 113 (281)
T COG0061 96 FEPDELEKALDALLE-GEY 113 (281)
T ss_pred cCHHHHHHHHHHHhc-Cce
Confidence 357777777777776 444
No 306
>PRK11761 cysM cysteine synthase B; Provisional
Probab=21.85 E-value=2.1e+02 Score=17.81 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=31.4
Q ss_pred HHHHHHhCCceeee-cCCCChHHHHHHHHHhCceeEecCCCCCHHHHHHHHHHH
Q psy381 8 LQEAFHYGVKLICI-PMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60 (70)
Q Consensus 8 ~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 60 (70)
.+-+-..|.|..++ |-..+ ..+...+..+|+-+++.....+.+...+..+++
T Consensus 79 A~~a~~~G~~~~i~~p~~~~-~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l 131 (296)
T PRK11761 79 AMIAAIKGYRMKLIMPENMS-QERRAAMRAYGAELILVPKEQGMEGARDLALQM 131 (296)
T ss_pred HHHHHHcCCCEEEEECCCCC-HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHH
Confidence 34445579988765 76555 457778888999887765422333333333433
No 307
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.70 E-value=99 Score=19.54 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=17.1
Q ss_pred CCcHHHHHHHHHh----CCceeeecC
Q psy381 2 QGGLQSLQEAFHY----GVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~----g~P~l~~P~ 23 (70)
-||-||+++++.. ++|++.+..
T Consensus 64 ~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 64 LGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred ECCcHHHHHHHHHhccCCCCEEEEec
Confidence 3788999888754 789888865
No 308
>PLN02564 6-phosphofructokinase
Probab=21.70 E-value=94 Score=21.31 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=28.7
Q ss_pred CCcHHHHHHHHHh-CCceeeecC---CCC---hH--HHHHHHHHhCceeEec
Q psy381 2 QGGLQSLQEAFHY-GVKLICIPM---FGD---QD--LNAQRIAKIKTGVVLE 44 (70)
Q Consensus 2 hgG~~t~~e~l~~-g~P~l~~P~---~~d---q~--~na~~~~~~g~g~~~~ 44 (70)
|+|+-+++-+++. |+-.+.+|- ..| .. .-.+++.+.+-++++-
T Consensus 262 ~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVV 313 (484)
T PLN02564 262 YSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVV 313 (484)
T ss_pred CHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEE
Confidence 6899999999999 799999985 223 11 1233444566666553
No 309
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=21.64 E-value=1.7e+02 Score=18.32 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHhCceeEecCCCC--CHHHHHHHHHHH
Q psy381 25 GDQDLNAQRIAKIKTGVVLEFDNL--NEDNIYDALITV 60 (70)
Q Consensus 25 ~dq~~na~~~~~~g~g~~~~~~~~--~~~~l~~~i~~~ 60 (70)
.|...-+..+.+.|.-.++...+. ..+++.++++++
T Consensus 50 TDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l 87 (247)
T COG1212 50 TDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKL 87 (247)
T ss_pred cCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhc
Confidence 455556666777777777765432 257788877776
No 310
>KOG2986|consensus
Probab=21.58 E-value=38 Score=21.55 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCceeee-cCCCC-hHHHHHHHHH-hCceeEecCCCCCHHHHHHHHHHH
Q psy381 5 LQSLQEAFHYGVKLICI-PMFGD-QDLNAQRIAK-IKTGVVLEFDNLNEDNIYDALITV 60 (70)
Q Consensus 5 ~~t~~e~l~~g~P~l~~-P~~~d-q~~na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~ 60 (70)
|++++=|-...+|+.++ --..| |..|...+.. .-++..+-++.++.++|-..|..+
T Consensus 124 Wn~~YlaGRlqKPV~~l~~~~e~~~~~~s~N~~sAlh~aLLlLpe~Fte~dLy~~I~~L 182 (313)
T KOG2986|consen 124 WNTFYLAGRLQKPVKILKNDLEDWQDNLSANLRSALHAALLLLPEKFTEFDLYKKIVSL 182 (313)
T ss_pred hhhheeecccccchHhhhCcHHHHHHHHHHHHHHHHHHHHHhCcccCcHHHHHHHHHhh
Confidence 45555555667888444 22233 4444444443 456666666788888888887765
No 311
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=21.51 E-value=1.4e+02 Score=15.54 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=17.5
Q ss_pred CceeEecCCCCCHHHHHHHHHHHhCChhhh
Q psy381 38 KTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67 (70)
Q Consensus 38 g~g~~~~~~~~~~~~l~~~i~~~l~~~~~~ 67 (70)
+.|+.++.++--.+.+..+|.++..+..+.
T Consensus 96 ~~~ia~~k~~~l~~~vn~~l~~l~~~G~~~ 125 (134)
T smart00079 96 GYGIAFPKGSPLRDDLSRAILKLSESGELQ 125 (134)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHhcCcHH
Confidence 345555543323566777777777775554
No 312
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=21.45 E-value=72 Score=17.89 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHHHhCCceeeecCC----CCh-HHHHHHHHHhCceeEecCCCCCHHHHHHHHHHHhCC
Q psy381 10 EAFHYGVKLICIPMF----GDQ-DLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63 (70)
Q Consensus 10 e~l~~g~P~l~~P~~----~dq-~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 63 (70)
..+..|-|.-.+|+. .+- ..-++.+.+.|....-. +..++.+.+-++|.|
T Consensus 25 ~~l~~G~p~afLpil~~~L~~yS~~va~~l~~~g~eL~~k----~D~RF~E~vyk~LRd 79 (131)
T PF15007_consen 25 QGLYKGDPSAFLPILHYALLSYSTHVARLLVDRGYELYGK----NDLRFVESVYKLLRD 79 (131)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHcCchhhcC----ChHHHHHHHHHHHHH
Confidence 457778888888872 233 36688888888875332 566677777777655
No 313
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=21.31 E-value=2.3e+02 Score=18.43 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=25.0
Q ss_pred HHHHHHhCceeEecC-CCCCHHHHHHHHHHHhCChhhhh
Q psy381 31 AQRIAKIKTGVVLEF-DNLNEDNIYDALITVLEDPIFQF 68 (70)
Q Consensus 31 a~~~~~~g~g~~~~~-~~~~~~~l~~~i~~~l~~~~~~~ 68 (70)
+..+...|..+.+.. +..+...+.-.+.+++-||-||.
T Consensus 224 ~~~l~~~~~~Vlvh~~dGwDrt~q~~sL~ql~lDpyyRT 262 (353)
T PF06602_consen 224 ADLLHDEGSSVLVHCSDGWDRTSQLSSLAQLLLDPYYRT 262 (353)
T ss_dssp HHHHHTT--EEEEECTTSSSHHHHHHHHHHHHH-CGGGS
T ss_pred HHHhhccCceEEEEcCCCCcccHHHHHHHHHHHHhhhhh
Confidence 444555677877754 44677777788999988998874
No 314
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=21.28 E-value=2.3e+02 Score=18.05 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=23.9
Q ss_pred HHHHHHhCceeEecCC---CCCHHHHHHHHHHHh
Q psy381 31 AQRIAKIKTGVVLEFD---NLNEDNIYDALITVL 61 (70)
Q Consensus 31 a~~~~~~g~g~~~~~~---~~~~~~l~~~i~~~l 61 (70)
++.+.+.|+..++..+ +.+.++|.++|.++-
T Consensus 109 ~~lf~~~Gv~~vi~ggqt~nPS~~dl~~Ai~~~~ 142 (313)
T PF13684_consen 109 AELFRSLGVDVVISGGQTMNPSTEDLLNAIEKVG 142 (313)
T ss_pred HHHHHhCCCeEEEeCCCCCCCCHHHHHHHHHhCC
Confidence 6777889988887654 457889999998853
No 315
>COG4048 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.19 E-value=56 Score=17.91 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=11.8
Q ss_pred HHHhCCceeeecCCC
Q psy381 11 AFHYGVKLICIPMFG 25 (70)
Q Consensus 11 ~l~~g~P~l~~P~~~ 25 (70)
..+.|.|++++|+-.
T Consensus 72 GpY~G~pVVV~Pik~ 86 (123)
T COG4048 72 GPYRGLPVVVAPIKD 86 (123)
T ss_pred CccCCceEEEEEecc
Confidence 356799999999853
No 316
>KOG0780|consensus
Probab=21.17 E-value=1.1e+02 Score=20.91 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=11.3
Q ss_pred HHHHHHhCCceeeecC
Q psy381 8 LQEAFHYGVKLICIPM 23 (70)
Q Consensus 8 ~~e~l~~g~P~l~~P~ 23 (70)
++--.+.+.|+++|-.
T Consensus 260 lSaVaaTksPIiFIGt 275 (483)
T KOG0780|consen 260 LSAVAATKSPIIFIGT 275 (483)
T ss_pred eeehhhhCCCEEEEec
Confidence 3334457999999975
No 317
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.10 E-value=47 Score=19.07 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHHHHHHH-hCceeEecCCCCCHHHHHHHHHHHhCCh-hhh
Q psy381 28 DLNAQRIAK-IKTGVVLEFDNLNEDNIYDALITVLEDP-IFQ 67 (70)
Q Consensus 28 ~~na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l~~~-~~~ 67 (70)
..|..++.+ ..+...+..++++.++..+.++++...+ .|.
T Consensus 61 ~~nl~~l~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~ 102 (193)
T PF06738_consen 61 GVNLDKLAAVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYP 102 (193)
T ss_pred CcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCC
Confidence 345555555 3555566667889999999999998766 443
No 318
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=21.07 E-value=2.7e+02 Score=18.58 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHHhCCceeeecC---CCChHHHHHHHHHhCceeEe-cCCCCC-HHHHHHHHHHHhCC
Q psy381 9 QEAFHYGVKLICIPM---FGDQDLNAQRIAKIKTGVVL-EFDNLN-EDNIYDALITVLED 63 (70)
Q Consensus 9 ~e~l~~g~P~l~~P~---~~dq~~na~~~~~~g~g~~~-~~~~~~-~~~l~~~i~~~l~~ 63 (70)
.-+..+|.+-++.=- ..-|..|..+++-+|+-++- ..+.-+ .+.+.++++.+..|
T Consensus 121 ta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn 180 (396)
T COG0133 121 TAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTN 180 (396)
T ss_pred HHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhc
Confidence 334445666555411 23488899999999988763 333323 56677777777654
No 319
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=20.73 E-value=1.5e+02 Score=17.03 Aligned_cols=18 Identities=6% Similarity=-0.138 Sum_probs=9.2
Q ss_pred HHHHHhCCceeeecCCCC
Q psy381 9 QEAFHYGVKLICIPMFGD 26 (70)
Q Consensus 9 ~e~l~~g~P~l~~P~~~d 26 (70)
.-.+.+|.++.++=...+
T Consensus 16 ~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 16 ALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp HHHHHTTSEEEEE-SSHH
T ss_pred HHHHhCCCcEEEEECChH
Confidence 444555666666644333
No 320
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=20.60 E-value=1.1e+02 Score=18.89 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=16.7
Q ss_pred CCcHHHHHHHHHh----CCceeeecC
Q psy381 2 QGGLQSLQEAFHY----GVKLICIPM 23 (70)
Q Consensus 2 hgG~~t~~e~l~~----g~P~l~~P~ 23 (70)
-||=||++.+... ++|++.+..
T Consensus 32 iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 32 LGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred ECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 3788999877554 689888865
No 321
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.35 E-value=2.3e+02 Score=17.67 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCceeee-cCCCChHHHHHHHHHhC
Q psy381 6 QSLQEAFHYGVKLICI-PMFGDQDLNAQRIAKIK 38 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~g 38 (70)
.-+.+++..|.++|++ |+++.=..-+..+...|
T Consensus 123 e~l~~a~a~gkgvIllt~H~GnWE~~~~~l~~~~ 156 (308)
T PRK06553 123 EIFERLRDDGKPALIFTAHLGNWELLAIAAAAFG 156 (308)
T ss_pred HHHHHHHhcCCCEEEEeeCchHHHHHHHHHHHcC
Confidence 3355666777777776 55443333333344444
No 322
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=20.34 E-value=1.8e+02 Score=16.39 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCceeeec
Q psy381 6 QSLQEAFHYGVKLICIP 22 (70)
Q Consensus 6 ~t~~e~l~~g~P~l~~P 22 (70)
+.+.+|...++|+|++.
T Consensus 80 ~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 80 NGLYDAKRDRAPVLAIA 96 (164)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 56789999999999995
No 323
>PLN00011 cysteine synthase
Probab=20.22 E-value=2.4e+02 Score=17.80 Aligned_cols=40 Identities=15% Similarity=-0.008 Sum_probs=28.0
Q ss_pred HHHHHHHhCCceeee-cCCCChHHHHHHHHHhCceeEecCCC
Q psy381 7 SLQEAFHYGVKLICI-PMFGDQDLNAQRIAKIKTGVVLEFDN 47 (70)
Q Consensus 7 t~~e~l~~g~P~l~~-P~~~dq~~na~~~~~~g~g~~~~~~~ 47 (70)
..+=+...|.|..++ |...+ ..+...+..+|+-+++....
T Consensus 84 lA~~a~~~G~~~~ivvp~~~~-~~k~~~i~~~GA~V~~~~~~ 124 (323)
T PLN00011 84 LACIGAARGYKVILVMPSTMS-LERRIILRALGAEVHLTDQS 124 (323)
T ss_pred HHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC
Confidence 344555679998665 87655 47888888899888765443
Done!