RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy381
(70 letters)
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 63.2 bits (154), Expect = 1e-13
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG + A GV + +P FGDQ A R+A++ G L+ L + + AL +L
Sbjct: 311 HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLL 370
Query: 62 EDPIFQ 67
+ P +
Sbjct: 371 DPPSRR 376
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 62.3 bits (152), Expect = 3e-13
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 1 MQGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60
QGG+QS EA V ++ +PM GDQ N + ++ G L+ ++ + A++ V
Sbjct: 370 TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDV 429
Query: 61 LEDPIFQ 67
+E+P ++
Sbjct: 430 IENPKYR 436
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 60.5 bits (147), Expect = 1e-12
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62
GG + EA + GV L+ IP DQ LNA+R+ ++ G+ L F+ L E+ + A+ VL
Sbjct: 308 GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLA 367
Query: 63 DPIFQ 67
D ++
Sbjct: 368 DDSYR 372
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 49.7 bits (119), Expect = 5e-09
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62
G + EA +GV ++ +P+FGDQ NA+ + V L + +++ +AL TV+
Sbjct: 349 AGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSEDLLNALKTVIN 408
Query: 63 DP 64
DP
Sbjct: 409 DP 410
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 46.6 bits (111), Expect = 7e-08
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62
GG+ S EA GV ++ +P DQ + A+RIA++ G L + + + + +A++ VL
Sbjct: 299 GGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLS 358
Query: 63 DP 64
DP
Sbjct: 359 DP 360
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 34.9 bits (81), Expect = 0.001
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFG--DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDAL 57
G + L EA + G L+ +P+ G +Q NA + ++ G+V++ ++L+ + L
Sbjct: 257 AGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVLRRFL 313
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 32.8 bits (75), Expect = 0.005
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGVVL 43
G S EA GV ++C P +GDQ +A + + KTGV L
Sbjct: 364 GWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRL 404
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 32.2 bits (73), Expect = 0.012
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGVVLEFDNLNEDNIYDALITVLE 62
G S EA +L+C P+ GDQ +N I + K GV + + + + L V+E
Sbjct: 355 GWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRI--SGFGQKEVEEGLRKVME 412
Query: 63 D 63
D
Sbjct: 413 D 413
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 25 GDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64
Q NA+ + K V++ + L + + AL+ +L DP
Sbjct: 286 DHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 32.1 bits (73), Expect = 0.012
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLE 44
G S+ E+ +GV + PM+ +Q LNA + K + G+ +E
Sbjct: 367 GWNSVLESLWFGVPIATWPMYAEQQLNAFTMVK-ELGLAVE 406
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 31.0 bits (70), Expect = 0.025
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFG--DQDLNAQRIAKIKTGVVLEF 45
GG + EA G LI IP G +Q NA ++ + G+ LE+
Sbjct: 255 GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 31.2 bits (70), Expect = 0.027
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGV 41
G S E GV ++ +P + DQ +NA+ I + K GV
Sbjct: 344 GWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGV 382
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 30.8 bits (69), Expect = 0.030
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGV 41
G S E+ GV ++ PM+ DQ NA+ + +I KTGV
Sbjct: 354 GWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGV 392
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 30.8 bits (69), Expect = 0.032
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAK-IKTGVVLEFD-NLNEDNIYDA 56
G S+ E+ +GV ++ PM+ +Q LNA + K +K V L+ D ++ D I +A
Sbjct: 359 GWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNA 413
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 30.0 bits (68), Expect = 0.056
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIA 35
G S EA GV ++ P+F DQ LN++ I
Sbjct: 350 GWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIV 381
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 30.0 bits (67), Expect = 0.061
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGVVLEFD 46
G S E+ GV +IC P DQ +NA+ + + K G+ +E D
Sbjct: 351 GWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGD 394
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 29.6 bits (67), Expect = 0.076
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 3 GGLQSLQEAFHYGVKLICIP----MFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALI 58
G ++ E G I +P QD NA + K +VL L + + +AL+
Sbjct: 80 AGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKLVEALL 139
Query: 59 TVLEDP 64
+L P
Sbjct: 140 KLLLKP 145
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 29.5 bits (67), Expect = 0.084
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 7 SLQEAFHYGVKLICIPM---FGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLED 63
++ E GV I IP DQ NA+ + + G+V+ L + + +AL+ +L D
Sbjct: 262 TVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD 321
Query: 64 P 64
P
Sbjct: 322 P 322
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 29.2 bits (66), Expect = 0.099
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 10 EAFHYGVKLICIP----MFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64
E GV I +P G Q+ NA+ + K +V+ L + + + ++ +L +P
Sbjct: 267 ELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNP 325
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 29.3 bits (67), Expect = 0.11
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 25 GDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDP 64
Q NA+ + +++ +L + + + L+ +L DP
Sbjct: 286 DHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDP 325
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 28.5 bits (64), Expect = 0.21
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNA-QRIAKIKTGVVLEFDNLNEDNIYDA 56
G S+ E+ +GV + P++ +Q LNA + +A + V ++ D DN +A
Sbjct: 365 CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR-KRDNFVEA 418
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with
NodJ to export a nodulation signal molecule. This model
does not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 27.6 bits (61), Expect = 0.42
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 21 IPMFGDQDLNAQRIAKIKTGVVLEFDNLN 49
I + G+ + R+A++ GVV +FDNL+
Sbjct: 61 ITVLGEPVPSRARLARVAIGVVPQFDNLD 89
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 27.3 bits (60), Expect = 0.51
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 49 NEDNIYDALITVLEDPIFQFFL 70
N D Y A + +LEDP FF+
Sbjct: 98 NNDGPYMAYVELLEDPDLIFFI 119
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 27.3 bits (60), Expect = 0.56
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNED 51
G S E+ GV +I P+F +Q++NA ++ + G+ + D+ E
Sbjct: 365 GWSSTLESVVGGVPMIAWPLFAEQNMNAALLSD-ELGIAVRSDDPKEV 411
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 26.9 bits (59), Expect = 0.70
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIA---KIKTGVVLEFDN-LNEDNIYDALIT 59
G S+ E+ +++ +P GDQ LN + ++ K+ V E +++++ DA+ +
Sbjct: 344 GFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINS 403
Query: 60 VLE 62
V++
Sbjct: 404 VMK 406
>gnl|CDD|213927 TIGR04314, methano7heme, methanogenesis multiheme c-type
cytochrome. Members of this protein family are
multiheme cytochrome c proteins of Methanosarcina
acetivorans C2A and several other archaeal methanogens.
All members have N-terminal signal peptides and are
presumed to act in electron transfer reactions
associated with methanogenesis. Putative heme-binding
motifs include five (or six) CXXCH motifs, a CXXXCH
motif, and a CXXXXCH motif. These proteins show multiple
regions of local homology, in the same order, with
multiheme cytochrome c proteins such as octaheme
tetrathionate reductase from Shewanella.
Length = 494
Score = 27.1 bits (60), Expect = 0.70
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 14 YGVKL---ICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQF 68
YGV + +C +G D +A R I G +F+N N + +A V +DPI F
Sbjct: 103 YGVDIDCMMCHEQYGLYDFDA-RAEAIANG---DFENANSAAMENASHEVQQDPIHVF 156
>gnl|CDD|163621 cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related
proteins, metallophosphatase domain. Acid phosphatase
5 (ACP5) removes the mannose 6-phosphate recognition
marker from lysosomal proteins. The exact site of
dephosphorylation is not clear. Evidence suggests
dephosphorylation may take place in a prelysosomal
compartment as well as in the lysosome. ACP5 belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 277
Score = 26.9 bits (60), Expect = 0.78
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 23 MFGD--------QDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLEDPIFQ 67
GD Q A+ +AK+ + +F DN YD + ++DP F+
Sbjct: 5 ALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFE 57
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 26.7 bits (59), Expect = 0.85
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 33 RIAKIKTGVVLEFDNLNED 51
R A+ + GVV +FDNL+ D
Sbjct: 76 RHARQRVGVVPQFDNLDPD 94
>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.
Length = 129
Score = 26.3 bits (59), Expect = 1.0
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 33 RIAKIKTG-VVLEFDNLNEDNIYDAL 57
+A++K G ++ E ++E+ +AL
Sbjct: 91 WVARVKPGQILFEIGGVSEEVAKEAL 116
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 26.4 bits (58), Expect = 1.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 4 GLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGV 41
G S E GV +I P+F +Q LN + I ++ + GV
Sbjct: 371 GWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGV 409
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 26.3 bits (58), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 21 IPMFGDQDLNAQRIAKIKTGVVLEFDNLN 49
I + G R+A+ + GVV +FDNL+
Sbjct: 98 ITVLGVPVPARARLARARIGVVPQFDNLD 126
>gnl|CDD|227017 COG4671, COG4671, Predicted glycosyl transferase [General function
prediction only].
Length = 400
Score = 25.8 bits (57), Expect = 2.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFG----DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDAL 57
GG ++ E +G + +P +Q + AQR+ ++ VL +NL N+ DAL
Sbjct: 301 MGGYNTVCEILSFGKPALIVP-RAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADAL 359
Query: 58 ITVLEDP 64
L P
Sbjct: 360 KAALARP 366
>gnl|CDD|238987 cd02029, PRK_like, Phosphoribulokinase-like (PRK-like) is a family
of proteins similar to phosphoribulokinase (PRK), the
enzyme involved in the Benson-Calvin cycle in
chloroplasts or photosynthetic prokaryotes. PRK
catalyzes the phosphorylation of D-ribulose 5-phosphate
to form D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 277
Score = 25.1 bits (55), Expect = 2.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 5 LQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKT 39
L+ + + +Y IC P F D+N QR+ + T
Sbjct: 178 LRRMPDYINY----IC-PQFSRTDINFQRVPTVDT 207
>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine
desulfurase.
Length = 424
Score = 25.5 bits (56), Expect = 2.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 38 KTGVVLEFDNLNEDNIYD 55
KTG VL+F L D + D
Sbjct: 145 KTGAVLKFVGLTPDEVLD 162
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 25.2 bits (56), Expect = 2.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 33 RIAKIKTGVV-LEFDNLNEDNIYDALIT 59
RI KI+ VV +EF+ I AL
Sbjct: 5 RIIKIRGDVVDVEFEEGALPPINQALTV 32
>gnl|CDD|225234 COG2359, SpoVS, Stage V sporulation protein SpoVS [Function
unknown].
Length = 87
Score = 24.4 bits (53), Expect = 3.4
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 15 GVKLICIPMFGDQDLNAQRIAKIKTGVVLE 44
G+ L+C+P F + ++ + IK V
Sbjct: 57 GIDLVCVPAFTEIEIEGEERTAIKFIVFPR 86
>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
GT1 family of glycosyltransferases. mtfB
(mannosyltransferase B) in E. coli has been shown to
direct the growth of the O9-specific polysaccharide
chain. It transfers two mannoses into the position 3 of
the previously synthesized polysaccharide.
Length = 365
Score = 24.6 bits (54), Expect = 5.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 45 FDNLNEDNIYDALITVLEDP 64
FD L+ + + A+ +LEDP
Sbjct: 318 FDPLDPEALAAAIERLLEDP 337
>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and
(R)-2-Hydroxyglutarate Dehydrogenase-like proteins,
NAD-binding and catalytic domains. This group contains
various putative dehydrogenases related to D-lactate
dehydrogenase (LDH), (R)-2-hydroxyglutarate
dehydrogenase (HGDH), and related enzymes, members of
the 2-hydroxyacid dehydrogenases family. LDH catalyzes
the interconversion of pyruvate and lactate, and HGDH
catalyzes the NAD-dependent reduction of 2-oxoglutarate
to (R)-2-hydroxyglutarate. Despite often low sequence
identity within this 2-hydroxyacid dehydrogenase family,
these proteins typically have a characteristic
arrangement of 2 similar subdomains of the alpha/beta
Rossmann fold NAD+ binding form. The NAD+ binding domain
is inserted within the linear sequence of the mostly
N-terminal catalytic domain, which has a similar domain
structure to the internal NAD binding domain.
Structurally, these domains are connected by extended
alpha helices and create a cleft in which NAD is bound,
primarily to the C-terminal portion of the 2nd
(internal) domain.
Length = 322
Score = 24.1 bits (53), Expect = 7.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 29 LNAQRIAKIKTGVVL 43
+N + IAK+K GV++
Sbjct: 213 INKESIAKMKDGVII 227
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.146 0.426
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,616,425
Number of extensions: 276336
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 42
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)