RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy381
(70 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 82.6 bits (205), Expect = 3e-22
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG + EA ++G+ ++ IP+F DQ N + V ++F+ ++ ++ +AL V+
Sbjct: 93 HGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVI 152
Query: 62 EDP 64
DP
Sbjct: 153 NDP 155
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 76.0 bits (187), Expect = 2e-18
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
G QE +I +P DQ NA + + L + D + + + ++
Sbjct: 306 HAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALV 365
Query: 62 EDPIFQ 67
+DP
Sbjct: 366 DDPEVA 371
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 74.8 bits (184), Expect = 6e-18
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
G+ S EA V ++ +P +Q +NA+RI ++ G + D + + + +A++ V
Sbjct: 328 HAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVA 387
Query: 62 EDPIFQ 67
DP
Sbjct: 388 SDPGVA 393
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 69.7 bits (171), Expect = 3e-16
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG+ +L EA ++G L+ +P D A+R+ ++ G VL + + D + A+ V
Sbjct: 320 HGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVA 379
Query: 62 EDPIFQ 67
DP
Sbjct: 380 ADPALL 385
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 68.3 bits (167), Expect = 1e-15
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG S A +GV + +P D + AQR + G+ L L D + +++ VL
Sbjct: 342 HGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL 401
Query: 62 EDPIFQ 67
+DP +
Sbjct: 402 DDPAHR 407
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 67.8 bits (166), Expect = 1e-15
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG + A GV + P GD NAQ +A+ G L DN++ D++ A +L
Sbjct: 315 HGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLL 374
Query: 62 EDPIFQ 67
+ ++
Sbjct: 375 AEESYR 380
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 67.4 bits (165), Expect = 2e-15
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFG-DQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITV 60
G ++ EAF GV L+ +P F + +A+R+ ++ G VL D L +I +A+ +
Sbjct: 304 HGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERL 363
Query: 61 LEDPIFQ 67
D +
Sbjct: 364 AADSAVR 370
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 65.9 bits (161), Expect = 6e-15
Identities = 10/66 (15%), Positives = 27/66 (40%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG + GV + +P+ + +A+ + GV + ++ +++ A +
Sbjct: 307 HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIR 366
Query: 62 EDPIFQ 67
+D +
Sbjct: 367 DDSSYV 372
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 65.6 bits (160), Expect = 8e-15
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
G S GV + IP + A+R+A + L + + I D+ +
Sbjct: 286 HAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQ 345
Query: 62 EDP 64
Sbjct: 346 AKD 348
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 60.7 bits (147), Expect = 5e-13
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62
GG + G + +P DQ A R+A + GV + +++ AL T L
Sbjct: 292 GGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT 351
Query: 63 D 63
Sbjct: 352 P 352
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 59.9 bits (145), Expect = 1e-12
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62
GG + A G I +P DQ A R+A++ GV + D++ AL T L
Sbjct: 309 GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALT 368
Query: 63 DPI 65
Sbjct: 369 PET 371
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 59.1 bits (143), Expect = 2e-12
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 3 GGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVLE 62
G + A GV + IP DQ A R+A + GV + +++ AL TVL
Sbjct: 310 GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLA 369
Query: 63 DPI 65
Sbjct: 370 PET 372
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 59.0 bits (143), Expect = 2e-12
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDN--LNEDNIYDALIT 59
GG + A G+ + +P + DQ A+ +A G+ L + + + D++ T
Sbjct: 293 AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIAT 352
Query: 60 VLEDP 64
VL D
Sbjct: 353 VLGDT 357
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 56.4 bits (136), Expect = 2e-11
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 2 QGGLQSLQEAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDNIYDALITVL 61
GG ++ A G+ + P DQ + R A + G+ L ++ D L ++
Sbjct: 306 HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVST--SDKVDADLLRRLI 363
Query: 62 EDP 64
D
Sbjct: 364 GDE 366
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 34.1 bits (79), Expect = 0.001
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 7 SLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGVVLEFDNLNEDNIYDALITVLED 63
SL E+ GV LIC P FGDQ LN + + + + GV +E + + +L
Sbjct: 355 SLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQ 412
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 33.4 bits (77), Expect = 0.002
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 7 SLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGVVLEFDNLNEDNI 53
S+ E+ +GV ++ P++ +Q LNA R+ K G+ L D ++
Sbjct: 362 SILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 409
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 33.0 bits (76), Expect = 0.003
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 15 GVKLICIPMFGDQDLNAQRIAKI-KTGVVLEFDNLNEDNIYDALITVLED 63
GV +I P FGDQ LN + + GV ++ L +++I AL +
Sbjct: 365 GVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSS 414
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 32.6 bits (75), Expect = 0.004
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 7 SLQEAFHYGVKLICIPMFGDQDLNAQRIAKI-KTGVVLEFD 46
S E+ G+ LI P++ +Q +NA +++ + +
Sbjct: 369 STLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG 409
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 32.3 bits (74), Expect = 0.005
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 7 SLQEAFHYGVKLICIPMFGDQDLNA 31
S E+ GV ++C P F DQ +
Sbjct: 383 STTESICAGVPMLCWPFFADQPTDC 407
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 27.5 bits (62), Expect = 0.27
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 20 CIPMFGDQDLNAQRIAKIKT--GVVLEFDNLNEDNIYD 55
I +F + ++I+ I T + + + NI+
Sbjct: 200 TIDIFSSEKTLKKQISSIVTDSTALEDPKDHENCNIFK 237
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive
human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens}
PDB: 3ahr_A*
Length = 465
Score = 24.8 bits (53), Expect = 2.4
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 45 FDNLNEDNIYDALITVLEDPIFQFF 69
D N ++ L +LE F+++
Sbjct: 50 IDRFNNYRLFPRLQKLLESDYFRYY 74
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 24.7 bits (52), Expect = 3.4
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 10 EAFHYGVKLICIPMFGDQDLNAQRIAKIKTGVVLEFDNLNEDN 52
EA I +Q+ A +AK V ++ + +
Sbjct: 239 EALLLKANFKAICYVKNQESTATWLAKKGYEVEYKYLEHHHHH 281
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 24.0 bits (53), Expect = 4.5
Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 2/34 (5%)
Query: 9 QEAFH-YGVKLICIPMFGDQDLNAQRIAKIKTGV 41
L + ++G Q + G
Sbjct: 89 ASELTAVAPHLKVVAVYGGTGYGKQ-KEALLRGA 121
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 23.7 bits (52), Expect = 5.3
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 9 QEAFHYGVKLICI-PMFGDQDLNAQRIAKIKTGVVLEF 45
++ G+ +C+ P L + K+K V+ F
Sbjct: 27 LKSEELGIYAVCVNPYHV--KLASSIAKKVKVCCVIGF 62
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET:
MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB:
1ize_A*
Length = 323
Score = 23.4 bits (51), Expect = 8.9
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 43 LEFDNLNEDNI------YDALITVLEDPIFQFFL 70
L F ++N +D + + L +PIF L
Sbjct: 124 LAFSSINTVQPTPQKTFFDNVKSSLSEPIFAVAL 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.146 0.426
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,075,965
Number of extensions: 52048
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 27
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)