Query psy3810
Match_columns 311
No_of_seqs 119 out of 206
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 18:00:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06432 GPI2: Phosphatidylino 100.0 4E-84 8.6E-89 610.3 31.6 260 14-274 1-282 (282)
2 KOG3059|consensus 100.0 4E-76 8.7E-81 547.5 26.2 269 7-282 5-290 (292)
3 PRK09458 pspB phage shock prot 60.7 12 0.00025 29.4 3.4 32 242-273 5-36 (75)
4 PF06667 PspB: Phage shock pro 57.7 15 0.00034 28.6 3.7 29 242-270 5-33 (75)
5 PF05112 Baculo_p47: Baculovir 37.1 15 0.00032 36.0 0.8 16 16-32 130-145 (313)
6 PF06453 LT-IIB: Type II heat- 36.3 7.2 0.00016 32.5 -1.2 12 20-31 74-85 (122)
7 KOG3142|consensus 34.9 2E+02 0.0044 26.2 7.7 39 9-49 35-74 (187)
8 KOG2887|consensus 34.2 3E+02 0.0066 24.9 8.5 56 15-70 11-70 (175)
9 PRK01100 putative accessory ge 32.0 4E+02 0.0086 24.3 14.1 169 35-217 20-198 (210)
10 PF12497 ERbeta_N: Estrogen re 31.1 27 0.00058 29.3 1.3 18 265-282 84-102 (110)
11 PHA03391 p47 viral transcripti 28.8 24 0.00052 35.5 0.7 16 16-32 132-147 (395)
12 TIGR02976 phageshock_pspB phag 28.4 84 0.0018 24.5 3.6 28 243-270 6-33 (75)
13 PF15337 Vasculin: Vascular pr 28.0 30 0.00064 28.3 1.0 6 22-27 22-27 (97)
14 KOG2927|consensus 27.3 1.2E+02 0.0027 30.3 5.3 19 195-213 197-215 (372)
15 COG5232 SEC62 Preprotein trans 26.1 64 0.0014 30.3 2.9 20 193-212 156-175 (259)
16 PF12513 SUV3_C: Mitochondrial 23.2 46 0.001 23.3 1.2 22 18-39 15-36 (49)
17 PF15210 SFTA2: Surfactant-ass 22.8 51 0.0011 24.4 1.3 20 20-39 11-31 (59)
18 KOG1298|consensus 22.1 7E+02 0.015 25.9 9.5 107 22-129 361-489 (509)
19 PF00948 Flavi_NS1: Flavivirus 20.8 41 0.00089 33.6 0.7 18 262-279 257-274 (356)
20 PF02285 COX8: Cytochrome oxid 20.1 1E+02 0.0022 21.7 2.4 23 245-267 18-42 (44)
No 1
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=100.00 E-value=4e-84 Score=610.34 Aligned_cols=260 Identities=36% Similarity=0.615 Sum_probs=232.3
Q ss_pred ccccccccCCCCCCCCChhhHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Q psy3810 14 WKKILYGNFTYPDNYTDESFLDELKKNIHVRNVNYIEAFTGASLVTEQICLVTIFMLTYMFLLNNWVQLEHLFLFNVFNF 93 (311)
Q Consensus 14 WkKvLy~kQ~YPDNYtD~sFL~~L~~N~~v~~y~y~~~v~~s~~v~q~is~v~lf~~~F~~l~~~~~~p~~l~~~~~~~~ 93 (311)
|||+||+||||||||||++|||+||+|.++++|+|++++.|+..|+||+|+|++|+++|.++++|+++|+.+.+.+.+++
T Consensus 1 WkKvLy~~Q~ypDNYtd~sFL~~l~~N~~~~~~~y~~~v~~~~~v~q~is~v~lf~~~F~~l~~~~~~~~~~~~~~~~~~ 80 (282)
T PF06432_consen 1 WKKVLYEKQPYPDNYTDPSFLEELRRNVNVRKYSYWELVLDSLVVSQQISSVVLFLLVFVYLYEGRLSPRVLLWISTALT 80 (282)
T ss_pred CchhhccCCCCCCCCCCHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh------------hhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHhcCCCCC
Q psy3810 94 SICYFLVFI------------NTIEIIKQLRFLASF-ILLFLLSPVLKSLAQTISTDTIYACSVIMIILHLLLNDYTRPF 160 (311)
Q Consensus 94 ~lg~~~~~~------------~~~~~~~~lks~ii~-~~l~~LSPVLkTLT~S~SsDSIwAlS~~l~l~hl~~~DY~~~~ 160 (311)
++||++|.. +...+.+++|+.+++ +++++|||||||||+|||||||||||++++++|+++|||+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~li~~~l~~LSPVLkTLT~s~SsDSI~Als~~l~l~~l~~~DY~~~~ 160 (282)
T PF06432_consen 81 LLGYILWDLLSSKENREGRSSRLSSRLRNLKSSLLIFFFLLLLSPVLKTLTKSTSSDSIWALSFWLFLLHLLFHDYSYSN 160 (282)
T ss_pred HHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHhccccc
Confidence 999999871 124578899999999 8999999999999999999999999999999999999998533
Q ss_pred CCCcc-ccccccchhhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhhhhhhHh-hhhhhh-----hHHHHHHHHHHHH-
Q psy3810 161 SSNMK-VIVSNSLSLNSIVFCSICLASRLSTNYHVFLLLLNTVQYFVLYPYVFT-LYHCYI-----QRYVLLTICLVLL- 232 (311)
Q Consensus 161 ~~~~~-~~~s~~lSlNaAl~aSVvLASRL~S~~~VF~lll~ai~lF~l~P~~r~-l~~~~~-----~~~~~~~~~~~~l- 232 (311)
....+ ++.++++|+|||++|||||||||+|+.|||+|+++|+|+|+++|++|+ +|+++. .+..+...+.+++
T Consensus 161 ~~~~~~~~~~~~lSlNaAl~asvvLASRL~s~~~VF~lll~ai~lF~l~P~~r~~l~~~s~~~~~~l~~~l~~~~~~~l~ 240 (282)
T PF06432_consen 161 SYVSRGISLPSSLSLNAALFASVVLASRLPSTLHVFALLLFAIQLFALFPIFRRRLRRHSPNAHVVLTFILVILAVYLLV 240 (282)
T ss_pred ccccccCCCCCcchHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 22111 248999999999999999999999999999999999999999999999 887642 1222223333434
Q ss_pred -HHhhhhHHHHHHHHHHHHHHHHhHHHHHHHhccCccccCCCC
Q psy3810 233 -YNVCHVSVFYLFCLCIVLINIVCPHWFVQWYTYKLFIIFKRK 274 (311)
Q Consensus 233 -~~~s~~~~~~l~~~~~~~i~~v~P~~fv~~Q~yK~eI~GPWD 274 (311)
...+.. ++++|++++++++++||+||+++|+|||||+||||
T Consensus 241 ~~~~~~~-~~~~~~~~~~~i~~v~P~~~v~~Q~yK~~I~GPWD 282 (282)
T PF06432_consen 241 YYPLSWS-LAVLFLLLVLFITFVCPWWFVRLQRYKNEIHGPWD 282 (282)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCccCCCC
Confidence 455666 88999999999999999999999999999999999
No 2
>KOG3059|consensus
Probab=100.00 E-value=4e-76 Score=547.49 Aligned_cols=269 Identities=32% Similarity=0.533 Sum_probs=242.2
Q ss_pred CCCCCCCccccccccCCCCCCCCChhhHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Q psy3810 7 KQAKRPPWKKILYGNFTYPDNYTDESFLDELKKNIHVRNVNYIEAFTGASLVTEQICLVTIFMLTYMFLLNNWVQLEHLF 86 (311)
Q Consensus 7 ~~~~~~~WkKvLy~kQ~YPDNYtD~sFL~~L~~N~~v~~y~y~~~v~~s~~v~q~is~v~lf~~~F~~l~~~~~~p~~l~ 86 (311)
.+++|+||||+||+||||||||||++|||++|||++++.|+|++++.|++++.||+++++.|..+|..++.+.++|..+.
T Consensus 5 ~~~~~~pWkKvLy~kQ~YPDNYtDesFle~lr~ni~i~~~~~~~~v~~~~~~~~~L~~i~~~~~if~~~l~~~~~~~~~l 84 (292)
T KOG3059|consen 5 DMMTRMPWKKVLYLKQEYPDNYTDESFLEELRMNINISIYDLWSAVAESMVLSQHLDMITSFVVIFVSTLESNLSENKIL 84 (292)
T ss_pred cccCCCchHHHHhhcCCCCCcccCHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHhhhhhhHHHHHHHHHHHHhhcchhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHhcC
Q psy3810 87 LFNVFNFSICYFLVF---------INTIEIIKQLRFLASF-ILLFLLSPVLKSLAQTISTDTIYACSVIMIILHLLLNDY 156 (311)
Q Consensus 87 ~~~~~~~~lg~~~~~---------~~~~~~~~~lks~ii~-~~l~~LSPVLkTLT~S~SsDSIwAlS~~l~l~hl~~~DY 156 (311)
..+..+..+||+.+. .+.....+++|+++.+ .+++++|||+||||+|+|||||||+++++++.|+++|||
T Consensus 85 ~~~~~~~~~~fL~f~~~~~~~~r~~sl~~~~~~lks~~~vt~~ly~lsPVl~TLt~SiSsDsI~a~sv~l~L~~~ff~~y 164 (292)
T KOG3059|consen 85 YGSNSIPGIGFLLFDLLLSPRGRTLSLALLPEDLKSIFTVTLFLYGLSPVLKTLTKSISSDSIWAMSVWLLLGNLFFHDY 164 (292)
T ss_pred ccccchhHHHHHHHHHHhccccccCChhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcchHHHHHHHHHHHHHhcccc
Confidence 888889999999886 1235688999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccc-ccccchhhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhhhhhhHh-hhhhh-----hhHHHHHHHHH
Q psy3810 157 TRPFSSNMKVI-VSNSLSLNSIVFCSICLASRLSTNYHVFLLLLNTVQYFVLYPYVFT-LYHCY-----IQRYVLLTICL 229 (311)
Q Consensus 157 ~~~~~~~~~~~-~s~~lSlNaAl~aSVvLASRL~S~~~VF~lll~ai~lF~l~P~~r~-l~~~~-----~~~~~~~~~~~ 229 (311)
| .+++ .++++|+|++++|+|+|||||+++.|||+|++||+|+|+++|.+|+ +++.. ..++.++..+.
T Consensus 165 ~------~s~~~vs~~lS~na~v~~sv~LaSRl~~~~~vF~fllfai~~~al~p~~~~~i~~~~~~~~~~~~~~~~~~ai 238 (292)
T KOG3059|consen 165 G------ISTIRVSGPLSLNAAVSASVLLASRLEKSIHVFNFLLFAIQLFALLPNFRKRIKKVIPRSSNLMVLVLASVAI 238 (292)
T ss_pred c------ccccccCCcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHH
Confidence 9 4444 6778999999999999999999999999999999999999999999 87542 34444555555
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHhccCccccCCCCCCCCCCCC
Q psy3810 230 VLLYNVCHVSVFYLFCLCIVLINIVCPHWFVQWYTYKLFIIFKRKRFHGGNHN 282 (311)
Q Consensus 230 ~~l~~~s~~~~~~l~~~~~~~i~~v~P~~fv~~Q~yK~eI~GPWD~a~~~~~~ 282 (311)
+.+.-.+.. ++++|+..+.+|+|+||.|+++.|+||+|||||||||.|+--+
T Consensus 239 ~~~~~~s~~-~~~~F~~l~~~I~fvcp~~~I~~q~~k~~IhGpWDea~~~~d~ 290 (292)
T KOG3059|consen 239 IIIADISLL-IFFVFLSLICFINFVCPYWLIRLQLYKNDIHGPWDEASPKLDN 290 (292)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccCC
Confidence 544333444 7788999999999999999999999999999999999998644
No 3
>PRK09458 pspB phage shock protein B; Provisional
Probab=60.65 E-value=12 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhccCccccCCC
Q psy3810 242 YLFCLCIVLINIVCPHWFVQWYTYKLFIIFKR 273 (311)
Q Consensus 242 ~l~~~~~~~i~~v~P~~fv~~Q~yK~eI~GPW 273 (311)
++.+-.++|+.||.|.|++.-.+-|.+-.+.-
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~sk~~~~~~L 36 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRSKRQGSQGL 36 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcccccCCCCC
Confidence 44555678999999999998887776655433
No 4
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=57.65 E-value=15 Score=28.60 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhccCcccc
Q psy3810 242 YLFCLCIVLINIVCPHWFVQWYTYKLFII 270 (311)
Q Consensus 242 ~l~~~~~~~i~~v~P~~fv~~Q~yK~eI~ 270 (311)
++..-.++|+.||.|.|++.-.+.|.+..
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk~~~~ 33 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSKWKSS 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45556668899999999998887776553
No 5
>PF05112 Baculo_p47: Baculovirus P47 protein; InterPro: IPR007799 This family consists of unidentified baculoviral p47 proteins which is one of the primary components of Autographa californica nuclear polyhedrosis virus (AcMNPV) encoded RNA polymerase, which initiates transcription from late and very late promoters []. ; GO: 0046782 regulation of viral transcription
Probab=37.06 E-value=15 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=13.0
Q ss_pred ccccccCCCCCCCCChh
Q psy3810 16 KILYGNFTYPDNYTDES 32 (311)
Q Consensus 16 KvLy~kQ~YPDNYtD~s 32 (311)
-+|||| +|+||||=..
T Consensus 130 N~lWER-GYEd~YTLGQ 145 (313)
T PF05112_consen 130 NVLWER-GYEDHYTLGQ 145 (313)
T ss_pred hhhccc-ccccCCCccc
Confidence 479999 9999999433
No 6
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=36.26 E-value=7.2 Score=32.47 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=8.3
Q ss_pred ccCCCCCCCCCh
Q psy3810 20 GNFTYPDNYTDE 31 (311)
Q Consensus 20 ~kQ~YPDNYtD~ 31 (311)
..|+|||||-..
T Consensus 74 gg~~YPdN~ls~ 85 (122)
T PF06453_consen 74 GGQDYPDNYLSN 85 (122)
T ss_dssp --SSTTHHHHHH
T ss_pred CCCcCchhHhhH
Confidence 569999998654
No 7
>KOG3142|consensus
Probab=34.93 E-value=2e+02 Score=26.21 Aligned_cols=39 Identities=28% Similarity=0.692 Sum_probs=27.6
Q ss_pred CCCCCcccccccc-CCCCCCCCChhhHHHHHhcCccccccHH
Q psy3810 9 AKRPPWKKILYGN-FTYPDNYTDESFLDELKKNIHVRNVNYI 49 (311)
Q Consensus 9 ~~~~~WkKvLy~k-Q~YPDNYtD~sFL~~L~~N~~v~~y~y~ 49 (311)
..++||+..+=.+ =..|+|+.|.. ++.|+|...=+-+|.
T Consensus 35 st~RpW~ef~d~~~fs~P~s~s~a~--sRi~~Nl~yF~~NY~ 74 (187)
T KOG3142|consen 35 STRRPWSEFFDRSAFSRPRSLSDAT--SRIKRNLSYFRVNYV 74 (187)
T ss_pred hccCCHHHHHcccccCCCccHHHHH--HHHHHHHHHHHHhHH
Confidence 4567898887644 67899998875 778888755444453
No 8
>KOG2887|consensus
Probab=34.18 E-value=3e+02 Score=24.89 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=34.0
Q ss_pred cccccccCCCCCCCCChhhHHHHHhcC-cc---ccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy3810 15 KKILYGNFTYPDNYTDESFLDELKKNI-HV---RNVNYIEAFTGASLVTEQICLVTIFML 70 (311)
Q Consensus 15 kKvLy~kQ~YPDNYtD~sFL~~L~~N~-~v---~~y~y~~~v~~s~~v~q~is~v~lf~~ 70 (311)
+++++-+.|+|--+.+.++.++.+.+. .. ++.-+..++........-++++.+...
T Consensus 11 ~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~ 70 (175)
T KOG2887|consen 11 NDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVL 70 (175)
T ss_pred hhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478888888887777888999988862 22 122234455555555555555554443
No 9
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=31.99 E-value=4e+02 Score=24.29 Aligned_cols=169 Identities=8% Similarity=0.039 Sum_probs=76.0
Q ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Q psy3810 35 DELKKNIHVRNVNYIEAFTGASLVTEQICLVTIFMLTYMFLLNNWVQLEHLFLFNVFNFSICYFLVFI-NTIEIIKQLRF 113 (311)
Q Consensus 35 ~~L~~N~~v~~y~y~~~v~~s~~v~q~is~v~lf~~~F~~l~~~~~~p~~l~~~~~~~~~lg~~~~~~-~~~~~~~~lks 113 (311)
++|++|-+..+-++..+..+.-.+.+.+..+.+.+++...+ |.+. -+..+.+++...|+ +++-..++-..
T Consensus 20 ~~l~~~~~~~~~~~~~i~YGl~~il~~i~k~i~il~i~~i~--g~~~-------~tli~~l~f~~lR~~aGG~Ha~s~~~ 90 (210)
T PRK01100 20 SKLNDRWKDDEEGYLKVKYGLEIILINVSKFAIVYLIALVT--GLLL-------QTVTVHLSFLWLRRYSFGLHATNSIN 90 (210)
T ss_pred HHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ChHH-------HHHHHHHHHHHHHhccCceecCCCcH
Confidence 45545444444455566677777677666555554444332 2221 23345566666662 22223333344
Q ss_pred HHHH-HHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHhcCCCCCCCC-c-c-cc---ccccchhhHHHHHHHHHhc
Q psy3810 114 LASF-ILLFLLSPVLKSLAQTISTDTIYACSVIMIILHLLLNDYTRPFSSN-M-K-VI---VSNSLSLNSIVFCSICLAS 186 (311)
Q Consensus 114 ~ii~-~~l~~LSPVLkTLT~S~SsDSIwAlS~~l~l~hl~~~DY~~~~~~~-~-~-~~---~s~~lSlNaAl~aSVvLAS 186 (311)
+.++ .....+.|.+-.... .+..+ +.....+..++..-|+.....+ . + ++ .-...|.=..+.-.++..
T Consensus 91 C~I~S~iifv~~~~l~~~~~---~~~~~-~~ii~~~s~iii~~yAP~dt~nkPi~~~~~rk~lK~~sii~~~i~~ii~l- 165 (210)
T PRK01100 91 CTLISLTMFVLGAFIFQNIP---SNNWM-VLGTFGFILLNLFLYAPADTESLPLIGEKLRKTLKRKAMIGGLILMGITL- 165 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhc---hHHHH-HHHHHHHHHHHHHhcCCcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4555 555666666644332 22222 3222233344555666311110 0 0 00 111222211111111111
Q ss_pred cCCCCh-hHHHHHHHHHHHHhhhhhhHh-hhhh
Q psy3810 187 RLSTNY-HVFLLLLNTVQYFVLYPYVFT-LYHC 217 (311)
Q Consensus 187 RL~S~~-~VF~lll~ai~lF~l~P~~r~-l~~~ 217 (311)
=.+... .....+-+..|.+.+.|+.-+ ++++
T Consensus 166 ~i~~~~~~~~I~lGi~~q~~tllPi~~k~~~~~ 198 (210)
T PRK01100 166 LIPFAEMKTLIMVGSLFQVISINPITYKLLNRR 198 (210)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 113322 335666777888999999876 5554
No 10
>PF12497 ERbeta_N: Estrogen receptor beta; InterPro: IPR021064 This entry represents estrogen receptor beta (ERbeta) and is found in eukaryotes, approximately 110 amino acids in length. The proteins are found in association with PF00104 from PFAM, PF00105 from PFAM. There is a conserved IPS sequence motif and there are two completely conserved residues (Y and W) that may be functionally important. ERbeta binds estrogens with an affinity similar to that of ERalpha, and activates expression of reporter genes containing estrogen response elements in an estrogen-dependent manner. ERbeta acts as a transcription factor once bound to its ligand and it can dimerise with ERalpha [].
Probab=31.14 E-value=27 Score=29.26 Aligned_cols=18 Identities=11% Similarity=-0.263 Sum_probs=15.3
Q ss_pred cCcc-ccCCCCCCCCCCCC
Q psy3810 265 YKLF-IIFKRKRFHGGNHN 282 (311)
Q Consensus 265 yK~e-I~GPWD~a~~~~~~ 282 (311)
|-+. .++||+|+.+..|.
T Consensus 84 y~e~~~~spW~e~~~~eh~ 102 (110)
T PF12497_consen 84 YAEPPPHSPWCEAKPLEHV 102 (110)
T ss_pred ccccCCCCccccccccccc
Confidence 5666 89999999998885
No 11
>PHA03391 p47 viral transcription regulator p47; Provisional
Probab=28.83 E-value=24 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=13.1
Q ss_pred ccccccCCCCCCCCChh
Q psy3810 16 KILYGNFTYPDNYTDES 32 (311)
Q Consensus 16 KvLy~kQ~YPDNYtD~s 32 (311)
-+|||| +|+||||=..
T Consensus 132 N~lWER-GYEd~YTlGQ 147 (395)
T PHA03391 132 NVLWER-GYEDHYTLGQ 147 (395)
T ss_pred hhheec-ccccCCCccc
Confidence 479999 9999999443
No 12
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=28.42 E-value=84 Score=24.48 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccCcccc
Q psy3810 243 LFCLCIVLINIVCPHWFVQWYTYKLFII 270 (311)
Q Consensus 243 l~~~~~~~i~~v~P~~fv~~Q~yK~eI~ 270 (311)
+.+-+++|+.||.|.|++.-.+-|.+-.
T Consensus 6 l~~Pliif~ifVap~wl~lHY~~k~~~~ 33 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILHYRSKRKTA 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3445567888999999998777665544
No 13
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=28.04 E-value=30 Score=28.28 Aligned_cols=6 Identities=50% Similarity=1.066 Sum_probs=4.9
Q ss_pred CCCCCC
Q psy3810 22 FTYPDN 27 (311)
Q Consensus 22 Q~YPDN 27 (311)
|.||+|
T Consensus 22 qEy~eN 27 (97)
T PF15337_consen 22 QEYPEN 27 (97)
T ss_pred cccCcC
Confidence 789976
No 14
>KOG2927|consensus
Probab=27.31 E-value=1.2e+02 Score=30.32 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhhhHh
Q psy3810 195 FLLLLNTVQYFVLYPYVFT 213 (311)
Q Consensus 195 F~lll~ai~lF~l~P~~r~ 213 (311)
|+++.+|+.+|=+||..-|
T Consensus 197 fvl~tlaivLFPLWP~~mR 215 (372)
T KOG2927|consen 197 FVLVTLAIVLFPLWPRRMR 215 (372)
T ss_pred HHHHHHHHHhcccCcHHHh
Confidence 4889999999999998643
No 15
>COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]
Probab=26.07 E-value=64 Score=30.27 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhhhhhhH
Q psy3810 193 HVFLLLLNTVQYFVLYPYVF 212 (311)
Q Consensus 193 ~VF~lll~ai~lF~l~P~~r 212 (311)
-+|+++.+|+.+|-+||..-
T Consensus 156 ~~fvlv~lalVlfplWPr~m 175 (259)
T COG5232 156 GVFVLVTLALVLFPLWPRNM 175 (259)
T ss_pred HHHHHHHHHHHHHhcCchHh
Confidence 47999999999999999873
No 16
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=23.19 E-value=46 Score=23.32 Aligned_cols=22 Identities=36% Similarity=0.798 Sum_probs=17.9
Q ss_pred ccccCCCCCCCCChhhHHHHHh
Q psy3810 18 LYGNFTYPDNYTDESFLDELKK 39 (311)
Q Consensus 18 Ly~kQ~YPDNYtD~sFL~~L~~ 39 (311)
+|..+-|||.|+|..=-.++|.
T Consensus 15 lWLs~Rfp~~F~d~e~a~~~k~ 36 (49)
T PF12513_consen 15 LWLSYRFPDVFPDRELAEELKK 36 (49)
T ss_dssp HHHHCC-TTTSTTHHHHHHHHH
T ss_pred HHHHHHcccccCCHHHHHHHHH
Confidence 6888999999999887777775
No 17
>PF15210 SFTA2: Surfactant-associated protein 2
Probab=22.78 E-value=51 Score=24.41 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=16.2
Q ss_pred ccCCCCCCCC-ChhhHHHHHh
Q psy3810 20 GNFTYPDNYT-DESFLDELKK 39 (311)
Q Consensus 20 ~kQ~YPDNYt-D~sFL~~L~~ 39 (311)
.|..|++|-. |.+|||-|+|
T Consensus 11 Lk~sfl~n~S~~Ssfle~LeK 31 (59)
T PF15210_consen 11 LKDSFLANSSYDSSFLEFLEK 31 (59)
T ss_pred ehhhhccccchhhHHHHHHHH
Confidence 4678999987 6669999887
No 18
>KOG1298|consensus
Probab=22.06 E-value=7e+02 Score=25.91 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=55.3
Q ss_pred CCCCCCCCChhhHHHHHhcCccccccHHHHHHH-HHHHHHHHHH------HHHHHHHHHHHHhc------------cCch
Q psy3810 22 FTYPDNYTDESFLDELKKNIHVRNVNYIEAFTG-ASLVTEQICL------VTIFMLTYMFLLNN------------WVQL 82 (311)
Q Consensus 22 Q~YPDNYtD~sFL~~L~~N~~v~~y~y~~~v~~-s~~v~q~is~------v~lf~~~F~~l~~~------------~~~p 82 (311)
||-||=+-++.-+++++. ....+..|..++-. +..++|-++. -.+==.+|-|+..| -++|
T Consensus 361 ~pl~dL~d~ekv~~~i~s-Fy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP 439 (509)
T KOG1298|consen 361 KPLPDLSDAEKVSDYIKS-FYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNP 439 (509)
T ss_pred ccccccccHHHHHHHHHH-HHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCC
Confidence 889998888888888775 32222233322211 1122221111 11122366666553 4566
Q ss_pred hHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHH-HHHHHHHHHHHh
Q psy3810 83 EHLFLFNVFNFSICYFLVF--INTIEIIKQLRFLASF-ILLFLLSPVLKS 129 (311)
Q Consensus 83 ~~l~~~~~~~~~lg~~~~~--~~~~~~~~~lks~ii~-~~l~~LSPVLkT 129 (311)
+++-++.-+..+.-|.+++ .+.....+-+.++.++ .....+-|.++.
T Consensus 440 ~Pl~Lv~HffAValy~i~~ll~p~PsP~riw~s~~i~~~A~~vi~P~i~a 489 (509)
T KOG1298|consen 440 RPLSLVLHFFAVALYGIYRLLSPFPSPRRIWESLRILSLASSVIFPIIKA 489 (509)
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6664444444444455554 2233344556666666 666778888774
No 19
>PF00948 Flavi_NS1: Flavivirus non-structural Protein NS1 ; InterPro: IPR001157 The Flavivirus genome polypepetide contains the capsid protein C (core protein), the matrix protein (envelope protein M), the major envelope protein E, a number of small non structural proteins (NS1, NS2A, NS2B, NS4A and NS4B), helicase and RNA-directed polymerase (NS5) [].
Probab=20.75 E-value=41 Score=33.58 Aligned_cols=18 Identities=11% Similarity=-0.333 Sum_probs=14.6
Q ss_pred HhccCccccCCCCCCCCC
Q psy3810 262 WYTYKLFIIFKRKRFHGG 279 (311)
Q Consensus 262 ~Q~yK~eI~GPWD~a~~~ 279 (311)
..-||.+.+||||.+...
T Consensus 257 ipGY~~Q~~gPW~~~~l~ 274 (356)
T PF00948_consen 257 IPGYKTQTKGPWNQGPLE 274 (356)
T ss_pred CCcccccccCCccCCceE
Confidence 346999999999987654
No 20
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=20.12 E-value=1e+02 Score=21.72 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhH--HHHHHHhccCc
Q psy3810 245 CLCIVLINIVCP--HWFVQWYTYKL 267 (311)
Q Consensus 245 ~~~~~~i~~v~P--~~fv~~Q~yK~ 267 (311)
.+.++|++|..| |.+..+..||.
T Consensus 18 gltv~f~~~L~PagWVLshL~~YKk 42 (44)
T PF02285_consen 18 GLTVCFVTFLGPAGWVLSHLESYKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 556678888888 44555667875
Done!