Query psy3810
Match_columns 311
No_of_seqs 119 out of 206
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:01:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fxd_A Protein ICMQ; helix bun 36.7 8.8 0.0003 27.4 0.4 7 270-276 23-29 (57)
2 3bkd_A Transmembrane domain of 21.2 95 0.0032 18.5 2.9 19 135-153 1-19 (26)
3 1oww_A FN, fibronectin first t 18.7 30 0.001 27.3 0.5 18 270-287 48-65 (98)
4 1v54_M VIIIB, IX, cytochrome C 18.6 73 0.0025 21.7 2.4 24 245-268 18-43 (46)
5 2ljb_A M2 protein, BM2 protein 18.0 1E+02 0.0034 19.7 2.7 20 134-153 4-23 (35)
6 8tfv_A Protein (thanatin); bac 17.6 42 0.0014 18.9 0.8 11 296-306 7-17 (21)
7 2y69_M Cytochrome C oxidase po 13.8 1.4E+02 0.0047 22.1 3.0 24 245-268 42-67 (70)
8 2oqb_A Histone-arginine methyl 12.0 70 0.0024 25.9 1.0 24 282-305 20-43 (117)
9 2kih_A Matrix protein 2; S31N, 11.5 1.9E+02 0.0066 19.1 2.8 20 134-153 4-23 (43)
10 5gds_I Hirunorm V; serine prot 11.3 84 0.0029 18.7 0.9 13 274-286 5-17 (26)
No 1
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=36.72 E-value=8.8 Score=27.40 Aligned_cols=7 Identities=0% Similarity=-0.429 Sum_probs=5.6
Q ss_pred cCCCCCC
Q psy3810 270 IFKRKRF 276 (311)
Q Consensus 270 ~GPWD~a 276 (311)
+||||+-
T Consensus 23 ~GPWe~S 29 (57)
T 3fxd_A 23 KGPWDKS 29 (57)
T ss_dssp HSCTTSC
T ss_pred cCCchHH
Confidence 5999974
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=21.21 E-value=95 Score=18.51 Aligned_cols=19 Identities=47% Similarity=0.693 Sum_probs=16.7
Q ss_pred ccchHHHHHHHHHHHHHHH
Q psy3810 135 STDTIYACSVIMIILHLLL 153 (311)
Q Consensus 135 SsDSIwAlS~~l~l~hl~~ 153 (311)
|||-+.+-+-+..++|+++
T Consensus 1 ssDplv~aa~iiGilHLiL 19 (26)
T 3bkd_A 1 SSDPLVVAASIMGILHLIL 19 (26)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHH
Confidence 7899999999999999876
No 3
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=18.70 E-value=30 Score=27.25 Aligned_cols=18 Identities=22% Similarity=0.006 Sum_probs=15.5
Q ss_pred cCCCCCCCCCCCCCCcee
Q psy3810 270 IFKRKRFHGGNHNNGGLI 287 (311)
Q Consensus 270 ~GPWD~a~~~~~~~~~~~ 287 (311)
.|+|.|+++++|-|+=.|
T Consensus 48 ~g~Wke~~Ip~h~nSYtI 65 (98)
T 1oww_A 48 VGRWKEATIPGHLNSYTI 65 (98)
T ss_dssp SSCCEEEEECSSCCEEEE
T ss_pred CCceeEEEecCccceEEE
Confidence 799999999999987443
No 4
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=18.60 E-value=73 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhH--HHHHHHhccCcc
Q psy3810 245 CLCIVLINIVCP--HWFVQWYTYKLF 268 (311)
Q Consensus 245 ~~~~~~i~~v~P--~~fv~~Q~yK~e 268 (311)
.+.++|.+|..| |.+..++.||..
T Consensus 18 gl~v~f~~~L~PagWVLshL~~YKk~ 43 (46)
T 1v54_M 18 GLSVTFLSFLLPAGWVLYHLDNYKKS 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 555677888888 344556688854
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=17.96 E-value=1e+02 Score=19.72 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.7
Q ss_pred cccchHHHHHHHHHHHHHHH
Q psy3810 134 ISTDTIYACSVIMIILHLLL 153 (311)
Q Consensus 134 ~SsDSIwAlS~~l~l~hl~~ 153 (311)
=|||-+...+.+..++|+++
T Consensus 4 dSsDplviaA~IigiLHlil 23 (35)
T 2ljb_A 4 DSSDPLVVAASIIGILHFIA 23 (35)
T ss_dssp --CCTHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 48999999999999999976
No 6
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=17.57 E-value=42 Score=18.87 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=8.8
Q ss_pred eeEEecccchh
Q psy3810 296 AYLYCSHRTEK 306 (311)
Q Consensus 296 ~~~~~~~~~~~ 306 (311)
..+||..||.|
T Consensus 7 piiycnrrtgk 17 (21)
T 8tfv_A 7 PIIYCNRRTGK 17 (26)
T ss_dssp CCEEEEGGGTE
T ss_pred cEEEEcCcccc
Confidence 35799999976
No 7
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=13.81 E-value=1.4e+02 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhH--HHHHHHhccCcc
Q psy3810 245 CLCIVLINIVCP--HWFVQWYTYKLF 268 (311)
Q Consensus 245 ~~~~~~i~~v~P--~~fv~~Q~yK~e 268 (311)
.+.++|.+|..| |.+..++.||..
T Consensus 42 gltv~f~~~L~PagWVLshLe~YKk~ 67 (70)
T 2y69_M 42 GLSVTFLSFLLPAGWVLYHLDNYKKS 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 555677888888 344556688864
No 8
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=12.01 E-value=70 Score=25.94 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=18.9
Q ss_pred CCCceeeeeccCCceeEEecccch
Q psy3810 282 NNGGLIVPKYNNNSAYLYCSHRTE 305 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
++||.++|||+...--|-|.+..+
T Consensus 20 d~~~~~~~ky~~q~v~L~~~ydpq 43 (117)
T 2oqb_A 20 DANGEIQRHAEQQALRLEVRAGPD 43 (117)
T ss_dssp CTTSSCEEEEEEEEEEEEEEECSS
T ss_pred CCCCcEeecccCceEEEEEEECCC
Confidence 578899999997778888876543
No 9
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=11.49 E-value=1.9e+02 Score=19.05 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=16.2
Q ss_pred cccchHHHHHHHHHHHHHHH
Q psy3810 134 ISTDTIYACSVIMIILHLLL 153 (311)
Q Consensus 134 ~SsDSIwAlS~~l~l~hl~~ 153 (311)
-|||-+.+-+-+..++|+++
T Consensus 4 dssdplv~aa~iiGIlHLiL 23 (43)
T 2kih_A 4 DSSDPLVVAANIIGILHLIL 23 (43)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 48999999999999999875
No 10
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=11.32 E-value=84 Score=18.69 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCce
Q psy3810 274 KRFHGGNHNNGGL 286 (311)
Q Consensus 274 D~a~~~~~~~~~~ 286 (311)
|-..|.+||+|..
T Consensus 5 dagkPqshn~gDf 17 (26)
T 5gds_I 5 DAGXPESHXGGDY 17 (26)
T ss_pred cCCCcccccCCCc
Confidence 5567899998853
Done!