Query psy3810
Match_columns 311
No_of_seqs 119 out of 206
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 18:01:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y0jb1 g.37.1.2 (B:1-36) U-sh 20.6 8 0.00058 23.1 -0.4 6 298-303 30-35 (36)
2 d1nh2b_ a.32.1.1 (B:) Large ch 18.6 6.2 0.00045 25.4 -1.4 19 21-39 20-38 (46)
3 d1nvpb_ a.32.1.1 (B:) Large ch 13.5 7.2 0.00052 24.8 -2.1 19 21-39 18-36 (43)
4 d1v54m_ f.23.7.1 (M:) Mitochon 11.9 79 0.0057 19.6 2.7 24 244-267 17-42 (43)
5 d2glia5 g.37.1.1 (A:229-257) F 10.1 47 0.0034 19.0 1.0 18 22-39 8-25 (29)
6 d1h6ga2 a.24.9.1 (A:508-631) a 9.9 72 0.0053 24.0 2.4 29 26-54 54-82 (124)
7 d1mxia_ c.116.1.1 (A:) Hypothe 9.0 48 0.0035 24.6 1.0 17 169-185 126-142 (156)
8 d1uyla_ d.122.1.1 (A:) HSP90 { 8.8 52 0.0038 26.6 1.2 14 28-41 22-36 (208)
9 d1qled_ f.23.8.1 (D:) Bacteria 7.6 2.5E+02 0.018 17.1 4.4 28 50-77 15-42 (43)
10 d1ipaa1 c.116.1.1 (A:106-263) 7.3 63 0.0046 24.2 1.0 17 169-185 134-150 (158)
No 1
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.57 E-value=8 Score=23.12 Aligned_cols=6 Identities=83% Similarity=1.785 Sum_probs=4.2
Q ss_pred EEeccc
Q psy3810 298 LYCSHR 303 (311)
Q Consensus 298 ~~~~~~ 303 (311)
.|||||
T Consensus 30 yycshr 35 (36)
T d1y0jb1 30 YYCSHR 35 (36)
T ss_dssp TTTCSC
T ss_pred eeeecc
Confidence 377777
No 2
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.63 E-value=6.2 Score=25.42 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.2
Q ss_pred cCCCCCCCCChhhHHHHHh
Q psy3810 21 NFTYPDNYTDESFLDELKK 39 (311)
Q Consensus 21 kQ~YPDNYtD~sFL~~L~~ 39 (311)
|++|.||=+|++=|++||+
T Consensus 20 R~dF~~~Gvde~vL~eLk~ 38 (46)
T d1nh2b_ 20 REDFENAGIDEQTLQDLKN 38 (46)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHH
Confidence 5789999999999999996
No 3
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.49 E-value=7.2 Score=24.77 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=17.0
Q ss_pred cCCCCCCCCChhhHHHHHh
Q psy3810 21 NFTYPDNYTDESFLDELKK 39 (311)
Q Consensus 21 kQ~YPDNYtD~sFL~~L~~ 39 (311)
||+|.||=+|++=|++||+
T Consensus 18 R~~F~~~GvDe~vL~eLk~ 36 (43)
T d1nvpb_ 18 RDIFLDDGVDEQVLMELKT 36 (43)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHH
Confidence 6788899999999999996
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.89 E-value=79 Score=19.64 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHHHh--ccCc
Q psy3810 244 FCLCIVLINIVCPHWFVQWY--TYKL 267 (311)
Q Consensus 244 ~~~~~~~i~~v~P~~fv~~Q--~yK~ 267 (311)
..+.+.|++|..|.=+|-.+ .||.
T Consensus 17 igLt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 17 IGLSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHhcc
Confidence 34555788888887666555 6765
No 5
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.13 E-value=47 Score=19.04 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=12.0
Q ss_pred CCCCCCCCChhhHHHHHh
Q psy3810 22 FTYPDNYTDESFLDELKK 39 (311)
Q Consensus 22 Q~YPDNYtD~sFL~~L~~ 39 (311)
.+-...|||||-|+.=.+
T Consensus 8 ~gC~K~YtdPSSLRKH~k 25 (29)
T d2glia5 8 PGCTKRYTDPSSLRKHVK 25 (29)
T ss_dssp TTTCCEESSHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHH
Confidence 345678999997654333
No 6
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.87 E-value=72 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=20.5
Q ss_pred CCCCChhhHHHHHhcCccccccHHHHHHH
Q psy3810 26 DNYTDESFLDELKKNIHVRNVNYIEAFTG 54 (311)
Q Consensus 26 DNYtD~sFL~~L~~N~~v~~y~y~~~v~~ 54 (311)
|||-||.|-+.++..+..-+-+...-+.+
T Consensus 54 dNsEd~~y~~~V~~av~~L~~~i~P~f~~ 82 (124)
T d1h6ga2 54 DNYEPGVYTEKVLEATKLLSNTVMPRFTE 82 (124)
T ss_dssp TTSCSSHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988665544444443433
No 7
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=9.02 E-value=48 Score=24.64 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.0
Q ss_pred cccchhhHHHHHHHHHh
Q psy3810 169 SNSLSLNSIVFCSICLA 185 (311)
Q Consensus 169 s~~lSlNaAl~aSVvLA 185 (311)
...=|+|.|.+++|+|-
T Consensus 126 g~~~SLNvs~A~aI~ly 142 (156)
T d1mxia_ 126 ANSRSMNLSNSVAVTVY 142 (156)
T ss_dssp TTCCCCCHHHHHHHHHH
T ss_pred CCCCeeEHHHHHHHHHH
Confidence 44559999999999984
No 8
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.84 E-value=52 Score=26.58 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=12.0
Q ss_pred CCChh-hHHHHHhcC
Q psy3810 28 YTDES-FLDELKKNI 41 (311)
Q Consensus 28 YtD~s-FL~~L~~N~ 41 (311)
|+||. ||+||-+|.
T Consensus 22 Ys~~~iflRELIqNa 36 (208)
T d1uyla_ 22 YSNKEIFLRELISNS 36 (208)
T ss_dssp CSCTTHHHHHHHHHH
T ss_pred cCCchHhHHHHHhhH
Confidence 77888 999999887
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=7.63 E-value=2.5e+02 Score=17.14 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3810 50 EAFTGASLVTEQICLVTIFMLTYMFLLN 77 (311)
Q Consensus 50 ~~v~~s~~v~q~is~v~lf~~~F~~l~~ 77 (311)
+...++...+...+++++.+++|..+.+
T Consensus 15 kTF~gFi~~~t~~~i~~i~~liflAi~n 42 (43)
T d1qled_ 15 ATFAGFIKGATWVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456678888888888888888887653
No 10
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.30 E-value=63 Score=24.16 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=13.9
Q ss_pred cccchhhHHHHHHHHHh
Q psy3810 169 SNSLSLNSIVFCSICLA 185 (311)
Q Consensus 169 s~~lSlNaAl~aSVvLA 185 (311)
...=|+|.|.+++|+|-
T Consensus 134 g~~~SLNvs~A~aI~ly 150 (158)
T d1ipaa1 134 GQADSLNVSVSAALLLY 150 (158)
T ss_dssp SSCCCCCHHHHHHHHHH
T ss_pred CCCCeEeHHHHHHHHHH
Confidence 34558999999999984
Done!