RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3810
(311 letters)
>gnl|CDD|219026 pfam06432, GPI2, Phosphatidylinositol
N-acetylglucosaminyltransferase.
Glycosylphosphatidylinositol (GPI) represents an
important anchoring molecule for cell surface proteins.
The first step in its synthesis is the transfer of
N-acetylglucosamine (GlcNAc) from
UDP-N-acetylglucosamine to phosphatidylinositol (PI).
This step involves products of three or four genes in
both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG
A, PIG H and PIG C), respectively.
Length = 268
Score = 182 bits (463), Expect = 5e-56
Identities = 95/264 (35%), Positives = 150/264 (56%), Gaps = 15/264 (5%)
Query: 14 WKKILYGNFTYPDNYTDESFLDELKKNIHVRNVNYIEAFTGASLVTEQICLVTIFMLTYM 73
WKK+LY YPDNYTD SFL+EL++N++VR +Y + + ++++QI V +F+L ++
Sbjct: 1 WKKVLYEKQPYPDNYTDPSFLEELRRNVNVRTYDYWKVVLDSLVISQQISNVVLFLLVFV 60
Query: 74 FLLNNWVQLEHLFLFNVFNFSICYFL--VFINTIEIIKQLRFLASFIL----LFLLSPVL 127
++ V E L L ++ + Y L + ++ +L L S +L L LLSPVL
Sbjct: 61 YIYQGRVSPESLLLVSLGLLLLGYVLWDLVDGGGSLLHRLSDLKSALLITFFLLLLSPVL 120
Query: 128 KSLAQTISTDTIYACSVIMIILHLLLNDYTRPFSSNMKVIVSNSLSLNSIVFCSICLASR 187
K+L ++ S+DTI+A S +++LHLL +DY +S+SLS N+ +F SI LASR
Sbjct: 121 KTLTKSTSSDTIWALSFWLLLLHLLFHDY----GYLNTKQLSSSLSTNAALFASIVLASR 176
Query: 188 LSTNYHVFLLLLNTVQYFVLYPYV-FTLYHCYIQRYVLLTICLVLL----YNVCHVSVFY 242
L + HVF LL +Q F L P + ++ + +V+LT L +L +
Sbjct: 177 LPSTLHVFAFLLFAIQLFALLPILRRSIRKTSRRLHVVLTFALSILAVYLLLTLSPILAL 236
Query: 243 LFCLCIVLINIVCPHWFVQWYTYK 266
LF L ++ I+ VCP WF++ YK
Sbjct: 237 LFLLTVLFISFVCPLWFIRLQKYK 260
>gnl|CDD|129868 TIGR00786, dctM, TRAP transporter, DctM subunit. The Tripartite
ATP-independent Periplasmic Transporter (TRAP-T) Family
(TC 2.A.56)- DctM subunit TRAP-T family permeases
generally consist of three components, and these systems
have so far been found in Gram-negative bacteria,
Gram-postive bacteria and archaea. Only one member of
the family has been both sequenced and functionally
characterized. This system is the DctPQM system of
Rhodobacter capsulatus (Forward et al., 1997). DctP is a
periplasmic dicarboxylate (malate, fumarate, succinate)
binding receptor that is biochemically
well-characterized. DctQ is an integral cytoplasmic
membrane protein with 4 putative transmembrane a-helical
spanners (TMSs). DctM is a second integral cytoplasmic
membrane protein with 12 putative TMSs. These proteins
have been shown to be both necessary and sufficient for
the proton motive force-dependent uptake of
dicarboxylates into R. capsulatus [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 405
Score = 31.5 bits (72), Expect = 0.58
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 98 FLVFINTIEIIKQLRFLASFI----LLFLLSPVLKSLAQTISTDTIYACSVIMIILHLLL 153
FL+ IN + L + F+ + +L+P+L +A + D ++ +M +L+L +
Sbjct: 299 FLIMINIL-----LLIVGMFMDLTPAILILTPILLPVAVHLGIDPVHFG--VMFVLNLEI 351
Query: 154 NDYTRPFSSNMKVIVS 169
T P +N+ V
Sbjct: 352 GLLTPPVGTNLFVASG 367
>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein. This family includes the
PRA1 (Prenylated rab acceptor) protein which is a Rab
guanine dissociation inhibitor (GDI) displacement
factor. This family also includes the glutamate
transporter EAAC1 interacting protein GTRAP3-18.
Length = 153
Score = 28.8 bits (65), Expect = 2.5
Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 20/125 (16%)
Query: 9 AKRPPWKKIL-YGNFTYPDNYTDESFLDELKKNIHVRNVNYI---EAFTGASLVTEQICL 64
A PW + F+ P ++++ +++N+ NY A SL+T + L
Sbjct: 7 APLRPWSEFFDRSRFSRPRSFSE--ATSRVRRNLLYFQTNYAIVVLAVLLLSLLTNPLSL 64
Query: 65 VTIFMLTYM-FLLNNWVQLEHLFLFN-VFNFSICYFLVFINTIEIIKQLRFLASFILLFL 122
+ + +L L E L LF F+ + + S LLFL
Sbjct: 65 IVLLVLVAAWLFLYFLRPNEPLVLFGRTFSDRQVLIGLLV------------VSVPLLFL 112
Query: 123 LSPVL 127
S
Sbjct: 113 TSAGS 117
>gnl|CDD|221295 pfam11893, DUF3413, Domain of unknown function (DUF3413). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 250
amino acids in length. This domain is found associated
with pfam00884.
Length = 253
Score = 28.8 bits (65), Expect = 3.5
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 56 SLVTEQICLVTIFMLTYMFLLNNWVQLEHLFLFNVFNFSICYFLVFINTIEIIKQLRF-L 114
S + + L+ +F L+++ L ++ L+ I+T E+ Q RF L
Sbjct: 62 SFLAFALYLLVLFPLSFIIP-----PRRLLRGLAAIIATLGLTLLLIDT-EVFAQYRFHL 115
Query: 115 ASFILLFLLSPVLKSLAQTISTDTIYACSVIMIILHLLL 153
+ + LLS L+ ++ I+++L LLL
Sbjct: 116 SPVVWDLLLSGEQGELSVEWQ--LLFIVVPIILLLELLL 152
>gnl|CDD|233678 TIGR01998, PTS-II-BC-nag, PTS system, N-acetylglucosamine-specific
IIBC component. This model represents the combined B
and C domains of the PTS transport system enzyme II
specific for N-acetylglucosamine transport. Many of the
genes in this family also include an A domain as part of
the same polypeptide and thus should be given the name
"PTS system, N-acetylglucosamine-specific IIABC
component". This family is most closely related to the
glucose-specific PTS enzymes [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 476
Score = 28.6 bits (64), Expect = 5.4
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 145 IMIILHLLLNDYTRPFSSNMKVIVSNSLSLNSIVFCSICLASRLSTNYHVFLLLLNTVQY 204
++ LH LL + ++ + S S I + L+ T +LL+ + +
Sbjct: 304 VLYALHALLTGLSLFIAAMLHWTAGFSFSAGLIDYV---LSFNNPTANQPLMLLVQGLVF 360
Query: 205 FVLYPYVFTLYHCYIQRYVLLTI 227
F LY VF I+R+ L T
Sbjct: 361 FALYYVVFRF---AIRRFNLKTP 380
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.0 bits (62), Expect = 8.1
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 82 LEHLFLFNVFNFSICYFLVFINTIEIIKQLRFLASFILL-----FLLSPVLKSLAQTIS- 135
L +F+ N+F+ + + K+L +SFI + L + LK + +S
Sbjct: 3673 LNLMFVLNLFDSLLSSIETATKNMRTFKELAETSSFIEMSSCFKVLRAFNLKFQSMKLSS 3732
Query: 136 --------TDTIYACSVIMIIL 149
+ +C ++M+ L
Sbjct: 3733 LKEKLRSSSVDKMSCQLLMLFL 3754
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 27.6 bits (62), Expect = 9.7
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 67 IFMLTYMFLLNNWVQLEH-LFLFNVFNFSICYFLVFINTI-----------EIIKQLRFL 114
+ + +FLL L L LF +F FS F+V +N + +++ FL
Sbjct: 307 LGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFL 366
Query: 115 A-SFILLFLLSPVLKSLAQTISTDTIYACSVIMIIL 149
+LLFL L S Y +++ +I
Sbjct: 367 QNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG 402
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.333 0.144 0.458
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,776,997
Number of extensions: 1550853
Number of successful extensions: 3114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3003
Number of HSP's successfully gapped: 232
Length of query: 311
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 214
Effective length of database: 6,635,264
Effective search space: 1419946496
Effective search space used: 1419946496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 59 (26.4 bits)