RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3810
         (311 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.0 bits (69), Expect = 0.55
 Identities = 42/291 (14%), Positives = 84/291 (28%), Gaps = 105/291 (36%)

Query: 28  YTD--ESFLDELKKNIHVRNVNYIEAFTGASLVTEQI------------------CL--- 64
           Y D    F D    N    +   ++    + L  E+I                   L   
Sbjct: 18  YKDILSVFEDAFVDNF---DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 65  ----VTIFMLT-----YMFLLNNW-------VQLEHLFLF---NVFNFSICYFLVFINTI 105
               V  F+       Y FL++           +  +++     ++N +  +    ++ +
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 106 EIIKQLRFL------ASFILLF---------LLSPVLKSLA-QTISTDTIYACSV----- 144
           +   +LR        A  +L+          +   V  S   Q      I+  ++     
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 145 ---IMIILHLLLNDYTRPFSSNMKVIVSNSLSLNSIVFCSICLASRLSTNYHVFLLLLNT 201
              ++ +L  LL      ++S      +  L ++SI        + L             
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-------QAELRR----------- 236

Query: 202 VQYFVLYPYVFTLYHCYIQRYVLLTICLVLLYNVCHVSVFYLFCL-CIVLI 251
                  PY                 CL++L NV +   +  F L C +L+
Sbjct: 237 --LLKSKPYE---------------NCLLVLLNVQNAKAWNAFNLSCKILL 270


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 1.2
 Identities = 51/306 (16%), Positives = 92/306 (30%), Gaps = 130/306 (42%)

Query: 2   VVKT----RKQAKRPPWKKI--------------LY------GNFTYPDNYTDESFLDEL 37
           ++K     R  AKRP  KK               L       GN         + + +EL
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN--------TDDYFEEL 173

Query: 38  KKNIHVRNVNYIEAFTGAS------LVTEQICLVTIFMLTYMFLLNNWVQLEH------- 84
           +  ++      +      S      L+   +    +F  T    +  W  LE+       
Sbjct: 174 RD-LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGLNILEW--LENPSNTPDK 228

Query: 85  LFLFNVFNFS--------ICYFLVFINTI-----EIIKQLR-------------FLA--- 115
            +L ++   S        + +++V    +     E+   L+              +A   
Sbjct: 229 DYLLSIP-ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287

Query: 116 ---SFI--------LLFLL-------SPVLKSLAQTISTDTIYACSVIMIILHLLLNDYT 157
              SF         +LF +        P   SL  +I  D++              N+  
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPPSILEDSLE-------------NNEG 333

Query: 158 RPFSSNMKVIVSNSLSLNSI----VFCSICLA-SRLSTNYHVFLLLLNTVQYFVL--YPY 210
            P  S M       LS++++    V   +    S L     V + L+N  +  V+   P 
Sbjct: 334 VP--SPM-------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP- 383

Query: 211 VFTLYH 216
             +LY 
Sbjct: 384 -QSLYG 388


>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
           blood coagulation, oxidoreduc blood
           coagulation,oxidoreductase; HET: U10; 3.60A
           {Synechococcus SP}
          Length = 291

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 8/97 (8%), Positives = 25/97 (25%), Gaps = 1/97 (1%)

Query: 180 CSICLASRLSTNYHVFLLLLNTVQYFVLYPYVFTLYHCYIQRYVLLTICLVLLYNVCHVS 239
             + L+SR +    +    +  + +  +           + +       L  L +     
Sbjct: 56  SDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLVKRWRWPA-LFGLVSAMTAF 114

Query: 240 VFYLFCLCIVLINIVCPHWFVQWYTYKLFIIFKRKRF 276
             Y+  L + ++   C +            +      
Sbjct: 115 EMYMLYLMVAVLRQFCMYCTTAIILVAGLGLVTVLGH 151


>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
           post-fusion, viral PR; HET: NAG; 3.05A {Human
           parainfluenza virus 3}
          Length = 490

 Score = 28.1 bits (62), Expect = 4.3
 Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 5/111 (4%)

Query: 142 CSVIMIILHLLLNDY----TRPFSSNMKVIVSNSLSLNSIVFCSICLASRLSTNYHVFLL 197
           C    + L + L  +    T  F  N+  +    + L  I        + + T   V   
Sbjct: 174 CEAAGLQLGIALTQHYSELTNIFGDNIGSLQEKGIKLQGIASLYRTNITEIFTTSTVDKY 233

Query: 198 LLNTVQYFVLYPYVFTLYHCYIQRYVLLTICLVLLYNVCHVSVFYLFCLCI 248
            +  + +                  + L + L LL  + +  ++ +  +  
Sbjct: 234 DIYDLLFTESIKVRVIDVDLNDY-SITLQVRLPLLTRLLNTQIYRVDSISY 283


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.144    0.458 

Gapped
Lambda     K      H
   0.267   0.0803    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,627,190
Number of extensions: 259771
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 20
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 57 (25.6 bits)