RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3810
         (311 letters)



>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase,
           subunit II {Cow (Bos taurus) [TaxId: 9913]}
          Length = 90

 Score = 25.1 bits (55), Expect = 4.6
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 54  GASLVTEQICLVTIFMLTYMFLLNNWVQLEHLFLFNVFNFSICYFLVFINTIEIIKQLRF 113
             S + E++       L  +FL+++ V   ++    +         +    +E I  +  
Sbjct: 12  ATSPIMEELLHFHDHTLMIVFLISSLV--LYIISLMLTTKLTHTSTMDAQEVETIWTI-- 67

Query: 114 LASFILLFLLSPVLKSL 130
           L + IL+ +  P L+ L
Sbjct: 68  LPAIILILIALPSLRIL 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.144    0.458 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,181,755
Number of extensions: 54068
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 11
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (24.5 bits)