BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3811
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R658|VPS4B_PONAB Vacuolar protein sorting-associated protein 4B OS=Pongo abelii
GN=VPS4B PE=2 SV=1
Length = 444
Score = 120 bits (300), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/76 (76%), Positives = 63/76 (82%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRDALMQPVR VQSATHF + GPS DP+ VDDLLTPCSP PGA+EM
Sbjct: 336 YSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMT 395
Query: 64 FMDVPSDKLLEPPVSM 79
+MDVP DKLLEP VSM
Sbjct: 396 WMDVPGDKLLEPVVSM 411
>sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens
GN=VPS4B PE=1 SV=2
Length = 444
Score = 120 bits (300), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/76 (76%), Positives = 63/76 (82%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRDALMQPVR VQSATHF + GPS DP+ VDDLLTPCSP PGA+EM
Sbjct: 336 YSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMT 395
Query: 64 FMDVPSDKLLEPPVSM 79
+MDVP DKLLEP VSM
Sbjct: 396 WMDVPGDKLLEPVVSM 411
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus
GN=Vps4a PE=2 SV=1
Length = 437
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 62/76 (81%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRD+LMQPVR VQSATHF + GPS +PS +DDLLTPCSP PGA+EM
Sbjct: 329 YSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMT 388
Query: 64 FMDVPSDKLLEPPVSM 79
+MDVP DKLLEP V M
Sbjct: 389 WMDVPGDKLLEPVVCM 404
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 62/76 (81%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRD+LMQPVR VQSATHF + GPS +PS +DDLLTPCSP PGA+EM
Sbjct: 329 YSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMT 388
Query: 64 FMDVPSDKLLEPPVSM 79
+MDVP DKLLEP V M
Sbjct: 389 WMDVPGDKLLEPVVCM 404
>sp|P46467|VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B OS=Mus musculus
GN=Vps4b PE=1 SV=2
Length = 444
Score = 119 bits (299), Expect = 5e-27, Method: Composition-based stats.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRDALMQPVR VQSATHF + GPS DP+ V+DLLTPCSP PGA+EM
Sbjct: 336 YSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMT 395
Query: 64 FMDVPSDKLLEPPVSM 79
+MDVP DKLLEP VSM
Sbjct: 396 WMDVPGDKLLEPVVSM 411
>sp|Q0VD48|VPS4B_BOVIN Vacuolar protein sorting-associated protein 4B OS=Bos taurus
GN=VPS4B PE=2 SV=1
Length = 444
Score = 119 bits (298), Expect = 6e-27, Method: Composition-based stats.
Identities = 57/76 (75%), Positives = 62/76 (81%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRDALMQPVR VQSATHF + GPS DP+ VDDLLTPCSP PGA+EM
Sbjct: 336 YSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNNIVDDLLTPCSPGDPGAIEMT 395
Query: 64 FMDVPSDKLLEPPVSM 79
+MDVP DKLLEP V M
Sbjct: 396 WMDVPGDKLLEPVVCM 411
>sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens
GN=VPS4A PE=1 SV=1
Length = 437
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 62/76 (81%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSGADISI+VRD+LMQPVR VQSATHF + GPS +PS +DDLLTPCSP PGA+EM
Sbjct: 329 YSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMT 388
Query: 64 FMDVPSDKLLEPPVSM 79
+MDVP DKLLEP V M
Sbjct: 389 WMDVPGDKLLEPVVCM 404
>sp|Q54PT2|VPS4_DICDI Vacuolar protein sorting-associated protein 4 OS=Dictyostelium
discoideum GN=vps4 PE=3 SV=1
Length = 444
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSG+DI +V+DA+MQPVR VQ ATHF + PS DPS + D +TPCSP P A EM
Sbjct: 336 YSGSDIGSLVKDAIMQPVRAVQCATHFKQIRAPSREDPS-VMTDYVTPCSPGDPLAQEMT 394
Query: 64 FMDVPSDKLLEPPVSM 79
+MD+ KL EP +++
Sbjct: 395 WMDIDPTKLKEPEITI 410
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1
SV=1
Length = 437
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 12/79 (15%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDD---LLTPCSPSTPGAV 60
YSG+DI++VV+DALMQP+R +QSATHF S T DD LTPCSP GA+
Sbjct: 334 YSGSDIAVVVKDALMQPIRKIQSATHFKDVS---------TEDDETRKLTPCSPGDDGAI 384
Query: 61 EMNFMDVPSDKLLEPPVSM 79
EM++ D+ +D+L EP +++
Sbjct: 385 EMSWTDIEADELKEPDLTI 403
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps4 PE=3 SV=1
Length = 432
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 6/76 (7%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
YSG+DISIVVRDA+M+PVR + +ATHF V +K+ L+TPCSP P A E +
Sbjct: 330 YSGSDISIVVRDAIMEPVRRIHTATHF------KEVYDNKSNRTLVTPCSPGDPDAFESS 383
Query: 64 FMDVPSDKLLEPPVSM 79
+++V + ++EP +++
Sbjct: 384 WLEVNPEDIMEPKLTV 399
>sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens
GN=KATNAL2 PE=1 SV=3
Length = 538
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 4 YSGADISIVVRDALMQPVRLVQSA 27
YSG+DI +V R+A M+PVR + A
Sbjct: 463 YSGSDIKLVCREAAMRPVRKIFDA 486
>sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus
GN=Katnal2 PE=2 SV=2
Length = 539
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 4 YSGADISIVVRDALMQPVRLVQS 26
YSG+DI +V R+A M+PVR + S
Sbjct: 464 YSGSDIKLVCREAAMRPVRKIFS 486
>sp|Q9P3U2|YKX4_SCHPO Uncharacterized AAA domain-containing protein C328.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC328.04 PE=3 SV=1
Length = 741
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLT 50
YSG+D++ + +DA M P+R + + F + P++ +DD T
Sbjct: 670 YSGSDLTALAKDAAMGPLRSLGESLLFTKMESIRPIN----LDDFKT 712
>sp|Q47AF2|PYRF_DECAR Orotidine 5'-phosphate decarboxylase OS=Dechloromonas aromatica
(strain RCB) GN=pyrF PE=3 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 35 GPSPVDPSKTVDD--LLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMMPGQ 83
G VDP D ++ C S PG ++ F+DV +KL E + G+
Sbjct: 126 GRDSVDPYLAYPDKGVILLCRTSNPGGSDLQFLDVGGEKLYERVARLASGE 176
>sp|Q48735|HSLU_LACLE ATP-dependent protease ATPase subunit HslU OS=Lactobacillus
leichmannii GN=hslU PE=3 SV=2
Length = 464
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 4 YSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTP 51
Y G D+ +VRD + VR+V+ FV+ G + +KT+ LL P
Sbjct: 91 YVGRDVESMVRDLANEAVRIVEK-EEFVKVEGQAIRQANKTLVRLLVP 137
>sp|Q6PIW4|FIGL1_HUMAN Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2
Length = 674
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 SYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVD 46
++SGAD++ + R+A + P+R +Q+A + T P V P +D
Sbjct: 602 AFSGADMTQLCREASLGPIRSLQTAD--IATITPDQVRPIAYID 643
>sp|A9ZPC9|HMEN_LYMST Homeobox protein engrailed OS=Lymnaea stagnalis GN=EN PE=2 SV=1
Length = 799
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 24 VQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLE 74
V S+TH V+ P PV + D+L T SP+ G F D+ +LLE
Sbjct: 105 VMSSTHLVKRECP-PVQGADLSDNLATASSPAHTGKGYTPFEDICLKQLLE 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,693,684
Number of Sequences: 539616
Number of extensions: 1266381
Number of successful extensions: 2404
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2386
Number of HSP's gapped (non-prelim): 25
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)