Query psy3811
Match_columns 89
No_of_seqs 146 out of 418
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:01:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0739|consensus 100.0 3.9E-30 8.5E-35 202.4 -0.1 85 1-88 331-415 (439)
2 PF09336 Vps4_C: Vps4 C termin 99.5 1.8E-15 3.9E-20 93.4 -2.4 40 48-87 1-40 (62)
3 KOG0737|consensus 98.8 4E-09 8.7E-14 84.3 2.6 67 1-88 292-358 (386)
4 KOG0738|consensus 98.3 5.3E-07 1.1E-11 73.6 2.9 25 1-25 413-437 (491)
5 KOG0730|consensus 97.6 3.4E-05 7.4E-10 65.7 2.9 35 1-35 633-672 (693)
6 KOG0740|consensus 97.6 2.4E-05 5.1E-10 63.6 1.3 27 1-27 352-378 (428)
7 PTZ00454 26S protease regulato 97.1 0.00042 9.2E-09 55.3 2.9 34 1-34 347-383 (398)
8 KOG0733|consensus 96.9 0.00092 2E-08 57.5 3.4 26 1-26 392-417 (802)
9 COG1222 RPT1 ATP-dependent 26S 96.6 0.0015 3.2E-08 53.0 2.8 33 1-33 353-388 (406)
10 TIGR01243 CDC48 AAA family ATP 96.6 0.0018 3.8E-08 54.7 3.2 26 1-26 653-678 (733)
11 COG0464 SpoVK ATPases of the A 96.5 0.0018 4E-08 51.8 2.7 35 1-35 443-481 (494)
12 PRK03992 proteasome-activating 96.4 0.0027 5.8E-08 50.1 2.8 34 1-34 333-369 (389)
13 PTZ00361 26 proteosome regulat 96.4 0.0029 6.2E-08 51.4 3.0 34 1-34 385-421 (438)
14 TIGR01242 26Sp45 26S proteasom 96.2 0.0041 8.8E-08 48.2 2.9 24 1-24 324-347 (364)
15 CHL00206 ycf2 Ycf2; Provisiona 96.2 0.0035 7.7E-08 59.1 2.8 24 1-24 1838-1861(2281)
16 KOG0733|consensus 96.1 0.0044 9.6E-08 53.4 2.7 24 2-25 715-738 (802)
17 CHL00195 ycf46 Ycf46; Provisio 95.7 0.008 1.7E-07 49.4 2.7 23 1-23 425-447 (489)
18 PRK10733 hflB ATP-dependent me 95.1 0.018 3.8E-07 48.5 2.8 24 1-24 353-376 (644)
19 TIGR01243 CDC48 AAA family ATP 94.9 0.023 4.9E-07 48.1 3.0 26 1-26 377-402 (733)
20 TIGR01241 FtsH_fam ATP-depende 94.4 0.033 7.2E-07 45.0 2.8 33 1-33 256-291 (495)
21 KOG0731|consensus 94.1 0.037 8E-07 48.2 2.5 24 1-24 514-537 (774)
22 KOG0730|consensus 93.5 0.059 1.3E-06 46.5 2.6 33 1-35 382-414 (693)
23 KOG0735|consensus 93.4 0.069 1.5E-06 47.0 3.0 29 1-29 866-894 (952)
24 CHL00176 ftsH cell division pr 92.0 0.13 2.9E-06 43.6 2.9 33 1-33 384-419 (638)
25 KOG0726|consensus 91.8 0.16 3.4E-06 41.2 2.8 33 2-34 388-423 (440)
26 KOG0734|consensus 88.0 0.4 8.6E-06 41.4 2.4 24 1-24 502-525 (752)
27 KOG0727|consensus 87.4 0.49 1.1E-05 37.9 2.5 32 2-33 358-392 (408)
28 COG0465 HflB ATP-dependent Zn 85.1 0.68 1.5E-05 39.5 2.3 33 1-33 351-386 (596)
29 KOG0732|consensus 82.4 0.76 1.7E-05 41.6 1.7 27 1-27 470-496 (1080)
30 KOG0728|consensus 80.8 0.98 2.1E-05 36.1 1.6 24 2-25 350-373 (404)
31 KOG0736|consensus 75.8 2.7 5.8E-05 37.6 3.0 25 2-26 877-901 (953)
32 COG0464 SpoVK ATPases of the A 71.5 4 8.8E-05 32.7 2.8 24 1-24 181-204 (494)
33 KOG0652|consensus 70.4 1.6 3.6E-05 35.1 0.4 27 1-27 373-399 (424)
34 TIGR03689 pup_AAA proteasome A 68.8 5.1 0.00011 33.5 3.0 25 1-25 435-459 (512)
35 COG1223 Predicted ATPase (AAA+ 52.2 12 0.00026 30.1 2.2 36 1-36 315-354 (368)
36 KOG0651|consensus 51.1 4.3 9.3E-05 33.0 -0.4 25 1-25 334-358 (388)
37 KOG0729|consensus 44.3 17 0.00037 29.5 2.0 30 3-32 381-413 (435)
38 PHA01817 hypothetical protein 37.2 41 0.00088 27.5 3.2 31 2-32 208-238 (479)
39 PF12518 DUF3721: Protein of u 35.8 16 0.00036 20.1 0.5 9 46-54 23-31 (34)
40 KOG0741|consensus 35.2 35 0.00077 29.9 2.6 26 1-26 436-461 (744)
41 KOG0735|consensus 30.9 47 0.001 30.0 2.8 25 1-25 605-629 (952)
42 KOG0742|consensus 29.4 32 0.00069 29.4 1.4 32 1-32 573-607 (630)
43 PF13152 DUF3967: Protein of u 24.3 60 0.0013 17.8 1.5 19 15-33 7-25 (34)
44 PF08542 Rep_fac_C: Replicatio 23.8 70 0.0015 19.4 2.0 18 2-19 33-50 (89)
45 TIGR03689 pup_AAA proteasome A 20.3 74 0.0016 26.7 2.0 19 1-19 391-409 (512)
No 1
>KOG0739|consensus
Probab=99.95 E-value=3.9e-30 Score=202.35 Aligned_cols=85 Identities=69% Similarity=1.077 Sum_probs=77.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhhhhcCCCCCCCCCCCCCccccCCCCCCCccccccccCCCCcccCCCcccC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMM 80 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~~~~~~~~~~~~~~~~~~~tPCsp~dpga~ems~~di~~~~l~~P~vt~~ 80 (89)
|||||||||+++||+|+|+|||++|.|+||+++.+++ +.+. +.+.++||||+||||++|+|+|+++++|.+|+|||.
T Consensus 331 TeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s--~~~~-~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~ 407 (439)
T KOG0739|consen 331 TEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPS--NPSE-VDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMR 407 (439)
T ss_pred cCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCC--Chhh-hccccCCCCCCCcchhhhhhccCCHhhccCCCccHH
Confidence 8999999999999999999999999999999998876 2222 567899999999999999999999999999999999
Q ss_pred cccccccC
Q psy3811 81 PGQHENNR 88 (89)
Q Consensus 81 Df~~a~~~ 88 (89)
||..+..|
T Consensus 408 D~~k~l~~ 415 (439)
T KOG0739|consen 408 DFLKSLSR 415 (439)
T ss_pred HHHHHHhh
Confidence 99988654
No 2
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=99.47 E-value=1.8e-15 Score=93.36 Aligned_cols=40 Identities=53% Similarity=0.962 Sum_probs=35.6
Q ss_pred ccccCCCCCCCccccccccCCCCcccCCCcccCccccccc
Q psy3811 48 LLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMMPGQHENN 87 (89)
Q Consensus 48 ~~tPCsp~dpga~ems~~di~~~~l~~P~vt~~Df~~a~~ 87 (89)
+|+||||+||||++|+|+||+.++|.+|+|+|+||+.|..
T Consensus 1 ~~~PCs~~dp~a~~m~~~di~~~~l~~p~it~~DF~~Al~ 40 (62)
T PF09336_consen 1 MYTPCSPSDPGAVEMSLMDIPAEKLKEPPITMEDFEEALK 40 (62)
T ss_dssp -EEEESSSSTTEEEEEGTGS-GGGB-HHHBCHHHHHHHHH
T ss_pred CccCCCCCCccchhccHhhcCcccccCCCCCHHHHHHHHH
Confidence 5999999999999999999999999999999999999864
No 3
>KOG0737|consensus
Probab=98.76 E-value=4e-09 Score=84.32 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=44.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhhhhcCCCCCCCCCCCCCccccCCCCCCCccccccccCCCCcccCCCcccC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMM 80 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~~~~~~~~~~~~~~~~~~~tPCsp~dpga~ems~~di~~~~l~~P~vt~~ 80 (89)
|+|||||||.++|+.|++.|||++...+ =.. ... +. ....--+.++. ......++++++
T Consensus 292 t~GySGSDLkelC~~Aa~~~ire~~~~~-~~~-~d~---d~------~~~d~~~~~~~----------~~~~~~r~l~~e 350 (386)
T KOG0737|consen 292 TEGYSGSDLKELCRLAALRPIRELLVSE-TGL-LDL---DK------AIADLKPTQAA----------ASSCLLRPLEQE 350 (386)
T ss_pred cCCCcHHHHHHHHHHHhHhHHHHHHHhc-ccc-hhh---hh------hhhhccCCccc----------ccccccCcccHH
Confidence 7999999999999999999999998774 111 100 00 00011111111 344578999999
Q ss_pred cccccccC
Q psy3811 81 PGQHENNR 88 (89)
Q Consensus 81 Df~~a~~~ 88 (89)
||.+|.++
T Consensus 351 Df~~a~~~ 358 (386)
T KOG0737|consen 351 DFPKAINR 358 (386)
T ss_pred HHHHHHHh
Confidence 99999873
No 4
>KOG0738|consensus
Probab=98.27 E-value=5.3e-07 Score=73.55 Aligned_cols=25 Identities=44% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
+|||||+||.++||||+|.++|++.
T Consensus 413 ~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 413 SEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999875
No 5
>KOG0730|consensus
Probab=97.64 E-value=3.4e-05 Score=65.68 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhh-----hhhhhhcC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSA-----THFVRTSG 35 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a-----~~f~~~~~ 35 (89)
|+||||+||..||++|++..+|+...+ +||.++..
T Consensus 633 T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~ 672 (693)
T KOG0730|consen 633 TEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALK 672 (693)
T ss_pred hccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 899999999999999999999998877 78887653
No 6
>KOG0740|consensus
Probab=97.59 E-value=2.4e-05 Score=63.65 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=25.6
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSA 27 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a 27 (89)
|+||||+||..+|++|+|.|+|.+...
T Consensus 352 Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 352 TEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred hcCcccccHHHHHHHhhcCchhhcccc
Confidence 799999999999999999999999874
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.07 E-value=0.00042 Score=55.30 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=28.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhhc
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRTS 34 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~~ 34 (89)
|+||||+||..+|++|.|..+|+- ....+|.++.
T Consensus 347 t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~ 383 (398)
T PTZ00454 347 PEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGY 383 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 789999999999999999999985 3556777653
No 8
>KOG0733|consensus
Probab=96.88 E-value=0.00092 Score=57.48 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQS 26 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~ 26 (89)
|-||.|+|+..||++|++-.|+++.+
T Consensus 392 TPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 392 TPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHhh
Confidence 67999999999999999999999643
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0015 Score=52.96 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=27.1
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhh---hhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSA---THFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a---~~f~~~ 33 (89)
|+|+||+||+++|.||-|-.||+-..- ..|.++
T Consensus 353 ~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~A 388 (406)
T COG1222 353 TEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKA 388 (406)
T ss_pred cCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHH
Confidence 789999999999999999999986533 455543
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.61 E-value=0.0018 Score=54.71 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=24.0
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQS 26 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~ 26 (89)
|+||||+||..+|++|++..+|+...
T Consensus 653 t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 653 TEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999998754
No 11
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0018 Score=51.79 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=29.6
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh----hhhhhhhhcC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ----SATHFVRTSG 35 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~----~a~~f~~~~~ 35 (89)
|+||||+||..+|++|+|.++++.. ...||..+.+
T Consensus 443 t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~ 481 (494)
T COG0464 443 TEGYSGADIAALVREAALEALREARRREVTLDDFLDALK 481 (494)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 7899999999999999999999983 3467776553
No 12
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.38 E-value=0.0027 Score=50.11 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.4
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhhc
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRTS 34 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~~ 34 (89)
|+||||+||..+|++|.|..+|+- ....||..+.
T Consensus 333 t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~ 369 (389)
T PRK03992 333 TEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAI 369 (389)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 789999999999999999999975 3456776654
No 13
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.37 E-value=0.0029 Score=51.42 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=28.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhhc
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRTS 34 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~~ 34 (89)
|+||||+||..+|++|.|.++|+- ....||..+.
T Consensus 385 t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 385 KDELSGADIKAICTEAGLLALRERRMKVTQADFRKAK 421 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 689999999999999999999985 4557777643
No 14
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.20 E-value=0.0041 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV 24 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~ 24 (89)
|+||||+||..+|++|.|..+|+-
T Consensus 324 t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 324 TEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999875
No 15
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.17 E-value=0.0035 Score=59.10 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV 24 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~ 24 (89)
|.||||+||.+||+||++..+|+-
T Consensus 1838 T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1838 TMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999999999983
No 16
>KOG0733|consensus
Probab=96.08 E-value=0.0044 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.4
Q ss_pred CCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 2 YSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 2 eGySGsDi~~l~reA~m~pvr~~~ 25 (89)
+||||+||+.|||||.|..||+-.
T Consensus 715 ~gftGADLaaLvreAsi~AL~~~~ 738 (802)
T KOG0733|consen 715 EGFTGADLAALVREASILALRESL 738 (802)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999865
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.71 E-value=0.008 Score=49.41 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.8
Q ss_pred CCCCchhhHHHHHHHHhhhHHHh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRL 23 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~ 23 (89)
|+||||+||..+|++|++..+.+
T Consensus 425 T~GfSGAdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 425 SNKFSGAEIEQSIIEAMYIAFYE 447 (489)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHc
Confidence 78999999999999999988754
No 18
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.09 E-value=0.018 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=22.0
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV 24 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~ 24 (89)
|.||||+||.++|++|+...+|+-
T Consensus 353 t~G~sgadl~~l~~eAa~~a~r~~ 376 (644)
T PRK10733 353 TPGFSGADLANLVNEAALFAARGN 376 (644)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999999999853
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.92 E-value=0.023 Score=48.10 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQS 26 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~ 26 (89)
|+||+|+||..+|++|+|..+|++..
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998764
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.43 E-value=0.033 Score=44.99 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=26.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~ 33 (89)
|+||||+||.++|++|++..+|+- ....+|..+
T Consensus 256 t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a 291 (495)
T TIGR01241 256 TPGFSGADLANLLNEAALLAARKNKTEITMNDIEEA 291 (495)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 689999999999999999888753 344666654
No 21
>KOG0731|consensus
Probab=94.09 E-value=0.037 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV 24 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~ 24 (89)
|.||||+||.+||.||++..+|+-
T Consensus 514 t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 514 TPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred CCCCcHHHHHhhhhHHHHHHHHhc
Confidence 789999999999999999999954
No 22
>KOG0730|consensus
Probab=93.49 E-value=0.059 Score=46.48 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=28.5
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhhhhcC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSG 35 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~~~~~ 35 (89)
|-||.|+|+..+|++|.++.+|+ ...+|..+..
T Consensus 382 thGyvGaDL~~l~~ea~~~~~r~--~~~~~~~A~~ 414 (693)
T KOG0730|consen 382 THGYVGADLAALCREASLQATRR--TLEIFQEALM 414 (693)
T ss_pred ccchhHHHHHHHHHHHHHHHhhh--hHHHHHHHHh
Confidence 56999999999999999999999 5667777654
No 23
>KOG0735|consensus
Probab=93.42 E-value=0.069 Score=47.03 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=26.2
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATH 29 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~ 29 (89)
|+||||+||..|+-+|-|..++++.....
T Consensus 866 T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 866 TDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999976533
No 24
>CHL00176 ftsH cell division protein; Validated
Probab=92.04 E-value=0.13 Score=43.58 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.0
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh---hhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ---SATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~---~a~~f~~~ 33 (89)
|.||||+||.++|++|++...|.-. ...+|..+
T Consensus 384 t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~A 419 (638)
T CHL00176 384 TPGFSGADLANLLNEAAILTARRKKATITMKEIDTA 419 (638)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 6799999999999999988776653 23445443
No 25
>KOG0726|consensus
Probab=91.76 E-value=0.16 Score=41.23 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.5
Q ss_pred CCCchhhHHHHHHHHhhhHHHhhhhh---hhhhhhc
Q psy3811 2 YSYSGADISIVVRDALMQPVRLVQSA---THFVRTS 34 (89)
Q Consensus 2 eGySGsDi~~l~reA~m~pvr~~~~a---~~f~~~~ 34 (89)
+-+||+||+.+|.||-|-.+|+.... ..|++..
T Consensus 388 ddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~ 423 (440)
T KOG0726|consen 388 DDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAK 423 (440)
T ss_pred cccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHH
Confidence 46899999999999999999988644 6777653
No 26
>KOG0734|consensus
Probab=87.97 E-value=0.4 Score=41.41 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.1
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV 24 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~ 24 (89)
|-||||+||.|||..|++..-..-
T Consensus 502 T~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 502 TPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred CCCCchHHHHHHHHHHHHHHHhcC
Confidence 679999999999999987765443
No 27
>KOG0727|consensus
Probab=87.43 E-value=0.49 Score=37.87 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=25.0
Q ss_pred CCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhh
Q psy3811 2 YSYSGADISIVVRDALMQPVRLV---QSATHFVRT 33 (89)
Q Consensus 2 eGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~ 33 (89)
+--||+||+.+|+||-|..||+- ..+..|.+.
T Consensus 358 dkis~adi~aicqeagm~avr~nryvvl~kd~e~a 392 (408)
T KOG0727|consen 358 DKISGADINAICQEAGMLAVRENRYVVLQKDFEKA 392 (408)
T ss_pred cccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHH
Confidence 45699999999999999999985 344555543
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=85.10 E-value=0.68 Score=39.49 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=26.9
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhh---hhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSA---THFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a---~~f~~~ 33 (89)
|-||||+|+.+++.||++...|+-... .+|..+
T Consensus 351 tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea 386 (596)
T COG0465 351 TPGFSGADLANLLNEAALLAARRNKKEITMRDIEEA 386 (596)
T ss_pred CCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHH
Confidence 679999999999999999999987543 555543
No 29
>KOG0732|consensus
Probab=82.42 E-value=0.76 Score=41.64 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSA 27 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a 27 (89)
|-||-|+||..||-+|+|.++|+-.-.
T Consensus 470 t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 470 TSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred ccccchHHHHHHHHHHhhhhhccccCe
Confidence 469999999999999999999986544
No 30
>KOG0728|consensus
Probab=80.77 E-value=0.98 Score=36.15 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 2 YSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 2 eGySGsDi~~l~reA~m~pvr~~~ 25 (89)
.|.||++++.+|.||-|..+|+-.
T Consensus 350 ~gasgaevk~vcteagm~alrerr 373 (404)
T KOG0728|consen 350 PGASGAEVKGVCTEAGMYALRERR 373 (404)
T ss_pred CCCccchhhhhhhhhhHHHHHHhh
Confidence 489999999999999999999853
No 31
>KOG0736|consensus
Probab=75.81 E-value=2.7 Score=37.61 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCchhhHHHHHHHHhhhHHHhhhh
Q psy3811 2 YSYSGADISIVVRDALMQPVRLVQS 26 (89)
Q Consensus 2 eGySGsDi~~l~reA~m~pvr~~~~ 26 (89)
..|||+|+-.||.+|+|..|++...
T Consensus 877 ~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 877 PNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999998763
No 32
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=71.55 E-value=4 Score=32.74 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV 24 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~ 24 (89)
|.||+|+|+..+|++|.+..+++.
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~r~ 204 (494)
T COG0464 181 TVGKSGADLGALAKEAALRELRRA 204 (494)
T ss_pred cCCccHHHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999997
No 33
>KOG0652|consensus
Probab=70.42 E-value=1.6 Score=35.08 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSA 27 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a 27 (89)
|++|.|+-.+.+|-||-|..+|+-...
T Consensus 373 TddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 373 TDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccccCchhheeeehhhhHHHHhccccc
Confidence 789999999999999999999986543
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.82 E-value=5.1 Score=33.48 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=22.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
+++|||++|.++|..|.-..|+...
T Consensus 435 ~d~~sGa~i~~iv~~a~~~ai~~~~ 459 (512)
T TIGR03689 435 KDFVSGAMIANIVDRAKKRAIKDHI 459 (512)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999997754
No 35
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=52.17 E-value=12 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=28.3
Q ss_pred CCCCchhhHH-HHHHHHhhhHHHhhh---hhhhhhhhcCC
Q psy3811 1 MYSYSGADIS-IVVRDALMQPVRLVQ---SATHFVRTSGP 36 (89)
Q Consensus 1 teGySGsDi~-~l~reA~m~pvr~~~---~a~~f~~~~~~ 36 (89)
|.|+||-||. .+.+.|+.+.|++-. ..+||.++.++
T Consensus 315 t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 315 TKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 6899999997 578999999997654 44788776654
No 36
>KOG0651|consensus
Probab=51.13 E-value=4.3 Score=33.04 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
+|||.|+|+.++|+||-|-.+|+-.
T Consensus 334 ~d~f~gad~rn~~tEag~Fa~~~~~ 358 (388)
T KOG0651|consen 334 VDGFNGADLRNVCTEAGMFAIPEER 358 (388)
T ss_pred HhccChHHHhhhcccccccccchhh
Confidence 4799999999999999888777643
No 37
>KOG0729|consensus
Probab=44.34 E-value=17 Score=29.48 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=22.5
Q ss_pred CCchhhHHHHHHHHhhhHHHhhh---hhhhhhh
Q psy3811 3 SYSGADISIVVRDALMQPVRLVQ---SATHFVR 32 (89)
Q Consensus 3 GySGsDi~~l~reA~m~pvr~~~---~a~~f~~ 32 (89)
.-+|++|..+|.||-|-.||.-. ..+.|-.
T Consensus 381 nstgaeirsvcteagmfairarrk~atekdfl~ 413 (435)
T KOG0729|consen 381 NSTGAEIRSVCTEAGMFAIRARRKVATEKDFLD 413 (435)
T ss_pred CCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHH
Confidence 35799999999999999997543 3344543
No 38
>PHA01817 hypothetical protein
Probab=37.21 E-value=41 Score=27.49 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=27.2
Q ss_pred CCCchhhHHHHHHHHhhhHHHhhhhhhhhhh
Q psy3811 2 YSYSGADISIVVRDALMQPVRLVQSATHFVR 32 (89)
Q Consensus 2 eGySGsDi~~l~reA~m~pvr~~~~a~~f~~ 32 (89)
.|-|||.+-.|.+.|+-+-|+++|++..|..
T Consensus 208 sgdsgssllalakqamqellkkvqdalqwdv 238 (479)
T PHA01817 208 SGDSGSSLLALAKQAMQELLKKVQDALQWDV 238 (479)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhcch
Confidence 4789999999999999999999999966653
No 39
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=35.82 E-value=16 Score=20.10 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=7.2
Q ss_pred CCccccCCC
Q psy3811 46 DDLLTPCSP 54 (89)
Q Consensus 46 ~~~~tPCsp 54 (89)
+++|+||+.
T Consensus 23 g~~WMPC~~ 31 (34)
T PF12518_consen 23 GDKWMPCSN 31 (34)
T ss_pred cCccccCcc
Confidence 368999985
No 40
>KOG0741|consensus
Probab=35.18 E-value=35 Score=29.90 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.4
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQS 26 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~ 26 (89)
|-.|||++|.-|||.|.--.+-+...
T Consensus 436 TKNfSGAEleglVksA~S~A~nR~vk 461 (744)
T KOG0741|consen 436 TKNFSGAELEGLVKSAQSFAMNRHVK 461 (744)
T ss_pred hcCCchhHHHHHHHHHHHHHHHhhhc
Confidence 56899999999999998777766543
No 41
>KOG0735|consensus
Probab=30.95 E-value=47 Score=30.03 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
||||+.-|+.++|..|+...+++..
T Consensus 605 TEGy~~~DL~ifVeRai~~a~leri 629 (952)
T KOG0735|consen 605 TEGYLATDLVIFVERAIHEAFLERI 629 (952)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999995544
No 42
>KOG0742|consensus
Probab=29.35 E-value=32 Score=29.41 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCCCchhhHHHHH---HHHhhhHHHhhhhhhhhhh
Q psy3811 1 MYSYSGADISIVV---RDALMQPVRLVQSATHFVR 32 (89)
Q Consensus 1 teGySGsDi~~l~---reA~m~pvr~~~~a~~f~~ 32 (89)
|+||||-.|..|+ +.|++..--++.+..-|+.
T Consensus 573 TeGfSGREiakLva~vQAavYgsedcvLd~~lf~e 607 (630)
T KOG0742|consen 573 TEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDE 607 (630)
T ss_pred ccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 7999999999875 4455555555555555544
No 43
>PF13152 DUF3967: Protein of unknown function (DUF3967)
Probab=24.29 E-value=60 Score=17.80 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=14.8
Q ss_pred HHhhhHHHhhhhhhhhhhh
Q psy3811 15 DALMQPVRLVQSATHFVRT 33 (89)
Q Consensus 15 eA~m~pvr~~~~a~~f~~~ 33 (89)
+-+|..||++|.....-.+
T Consensus 7 ~~Lm~~iREiQE~KkliaA 25 (34)
T PF13152_consen 7 EQLMQTIREIQETKKLIAA 25 (34)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5689999999988666543
No 44
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=23.81 E-value=70 Score=19.36 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=13.1
Q ss_pred CCCchhhHHHHHHHHhhh
Q psy3811 2 YSYSGADISIVVRDALMQ 19 (89)
Q Consensus 2 eGySGsDi~~l~reA~m~ 19 (89)
+|||++||-.-..+.++.
T Consensus 33 ~G~s~~~Il~~l~~~l~~ 50 (89)
T PF08542_consen 33 EGYSASDILKQLHEVLVE 50 (89)
T ss_dssp TT--HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 599999998888777776
No 45
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=20.30 E-value=74 Score=26.73 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=16.0
Q ss_pred CCCCchhhHHHHHHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQ 19 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~ 19 (89)
++||+|+|+..+|++|+-+
T Consensus 391 ~~g~~~a~~~al~~~av~~ 409 (512)
T TIGR03689 391 FDGDREATAAALIQRAVDH 409 (512)
T ss_pred hcCCCHHHHHHHHHHHHHH
Confidence 3699999999999998543
Done!