Query psy3811
Match_columns 89
No_of_seqs 146 out of 418
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:02:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zan_A Vacuolar protein sortin 99.7 1.2E-17 4.3E-22 129.9 4.7 87 1-87 333-419 (444)
2 1xwi_A SKD1 protein; VPS4B, AA 99.6 5E-17 1.7E-21 121.6 2.3 87 1-87 211-297 (322)
3 3eie_A Vacuolar protein sortin 99.5 2.5E-14 8.5E-19 106.0 4.1 80 1-86 216-295 (322)
4 2qp9_X Vacuolar protein sortin 99.5 2.8E-14 9.7E-19 107.9 3.6 80 1-86 249-328 (355)
5 2krk_A 26S protease regulatory 98.7 6.5E-09 2.2E-13 65.7 2.9 33 1-33 42-77 (86)
6 3vlf_B 26S protease regulatory 98.7 7.9E-09 2.7E-13 65.2 3.0 34 1-34 32-68 (88)
7 3aji_B S6C, proteasome (prosom 98.7 4.8E-09 1.6E-13 64.8 1.8 34 1-34 32-68 (83)
8 2dzn_B 26S protease regulatory 98.6 1.4E-08 4.8E-13 63.0 2.9 34 1-34 29-65 (82)
9 3kw6_A 26S protease regulatory 98.6 1.7E-08 5.8E-13 61.7 2.9 24 1-24 34-57 (78)
10 3cf2_A TER ATPase, transitiona 98.6 2.3E-08 8E-13 84.3 3.0 32 1-32 679-710 (806)
11 2x8a_A Nuclear valosin-contain 97.8 9.3E-06 3.2E-10 59.3 2.3 25 1-25 214-238 (274)
12 4b4t_J 26S protease regulatory 97.7 1.8E-05 6.2E-10 62.4 2.9 33 1-33 350-385 (405)
13 4b4t_K 26S protease regulatory 97.6 2.9E-05 1E-09 61.2 2.9 33 1-33 375-410 (428)
14 4b4t_I 26S protease regulatory 97.6 3.5E-05 1.2E-09 61.5 2.9 33 1-33 384-419 (437)
15 4b4t_L 26S protease subunit RP 97.5 4.1E-05 1.4E-09 60.6 2.9 33 1-33 383-418 (437)
16 4b4t_M 26S protease regulatory 97.5 4.3E-05 1.5E-09 60.4 3.0 34 1-34 383-419 (434)
17 4b4t_H 26S protease regulatory 97.5 5E-05 1.7E-09 60.9 3.1 33 1-33 411-446 (467)
18 3cf2_A TER ATPase, transitiona 96.8 0.00032 1.1E-08 59.2 1.5 27 1-27 403-429 (806)
19 1ypw_A Transitional endoplasmi 96.7 0.00072 2.5E-08 56.3 2.5 31 1-31 679-709 (806)
20 3cf0_A Transitional endoplasmi 96.3 0.0028 9.5E-08 46.1 3.3 28 1-28 217-244 (301)
21 3d8b_A Fidgetin-like protein 1 95.8 0.0044 1.5E-07 46.3 2.5 25 1-25 283-307 (357)
22 3b9p_A CG5977-PA, isoform A; A 95.5 0.0071 2.4E-07 43.0 2.5 25 1-25 221-245 (297)
23 1ixz_A ATP-dependent metallopr 95.1 0.014 4.7E-07 40.7 2.8 23 1-23 217-239 (254)
24 1lv7_A FTSH; alpha/beta domain 93.5 0.042 1.4E-06 38.3 2.6 33 1-33 213-248 (257)
25 2qz4_A Paraplegin; AAA+, SPG7, 93.4 0.032 1.1E-06 38.4 1.8 33 1-33 210-245 (262)
26 1iy2_A ATP-dependent metallopr 93.3 0.045 1.6E-06 38.8 2.6 23 1-23 241-263 (278)
27 3hu3_A Transitional endoplasmi 92.9 0.06 2E-06 42.5 2.9 25 1-25 403-427 (489)
28 3vfd_A Spastin; ATPase, microt 92.5 0.064 2.2E-06 40.1 2.5 25 1-25 314-338 (389)
29 2r62_A Cell division protease 92.1 0.04 1.4E-06 38.4 0.9 34 1-34 214-250 (268)
30 3h4m_A Proteasome-activating n 92.0 0.1 3.5E-06 36.6 2.9 33 1-33 219-254 (285)
31 2ce7_A Cell division protein F 90.9 0.14 4.8E-06 40.6 2.9 33 1-33 217-252 (476)
32 2dhr_A FTSH; AAA+ protein, hex 89.3 0.16 5.5E-06 40.4 2.1 33 1-33 232-267 (499)
33 1ypw_A Transitional endoplasmi 74.8 1.9 6.6E-05 35.8 3.0 26 1-26 403-428 (806)
No 1
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.69 E-value=1.2e-17 Score=129.92 Aligned_cols=87 Identities=66% Similarity=0.978 Sum_probs=77.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhhhhcCCCCCCCCCCCCCccccCCCCCCCccccccccCCCCcccCCCcccC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMM 80 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~~~~~~~~~~~~~~~~~~~tPCsp~dpga~ems~~di~~~~l~~P~vt~~ 80 (89)
|+||||+||..||++|+|.+||+++.++||+.+.+....+.....++.|+||+++++++++|+|.+++.+++..|+|+|+
T Consensus 333 t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 412 (444)
T 2zan_A 333 TDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMW 412 (444)
T ss_dssp TTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHH
Confidence 68999999999999999999999999999998876554344444567899999999999999999999999999999999
Q ss_pred ccccccc
Q psy3811 81 PGQHENN 87 (89)
Q Consensus 81 Df~~a~~ 87 (89)
||+.|..
T Consensus 413 df~~a~~ 419 (444)
T 2zan_A 413 DMLRSLS 419 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 2
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.63 E-value=5e-17 Score=121.62 Aligned_cols=87 Identities=67% Similarity=0.996 Sum_probs=75.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhhhhcCCCCCCCCCCCCCccccCCCCCCCccccccccCCCCcccCCCcccC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMM 80 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~~~~~~~~~~~~~~~~~~~tPCsp~dpga~ems~~di~~~~l~~P~vt~~ 80 (89)
|+||||+||..||++|+|.++|++..++||+.+.+.+..+.+...+..|+||+++|+++++++|.+++.+++..|+|+++
T Consensus 211 t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 290 (322)
T 1xwi_A 211 TDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMS 290 (322)
T ss_dssp CTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHH
Confidence 68999999999999999999999999999998765443333333445799999999999999999999999999999999
Q ss_pred ccccccc
Q psy3811 81 PGQHENN 87 (89)
Q Consensus 81 Df~~a~~ 87 (89)
||+.|..
T Consensus 291 df~~al~ 297 (322)
T 1xwi_A 291 DMLRSLS 297 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
No 3
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.46 E-value=2.5e-14 Score=105.99 Aligned_cols=80 Identities=45% Similarity=0.704 Sum_probs=70.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhhhhcCCCCCCCCCCCCCccccCCCCCCCccccccccCCCCcccCCCcccC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMM 80 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~~~~~~~~~~~~~~~~~~~tPCsp~dpga~ems~~di~~~~l~~P~vt~~ 80 (89)
|+||||+||..||++|+|.++|+...+.+|+.+..... ....|+||+++++++.+++|.+++.+++..++|+++
T Consensus 216 t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 289 (322)
T 3eie_A 216 TEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD------ETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIK 289 (322)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----------CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc------cccccccccccccccccccccccccccccCCCCCHH
Confidence 68999999999999999999999999999987653221 225689999999999999999999999999999999
Q ss_pred cccccc
Q psy3811 81 PGQHEN 86 (89)
Q Consensus 81 Df~~a~ 86 (89)
||+.|.
T Consensus 290 df~~al 295 (322)
T 3eie_A 290 DFLKAI 295 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
No 4
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.45 E-value=2.8e-14 Score=107.86 Aligned_cols=80 Identities=44% Similarity=0.657 Sum_probs=69.8
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhhhhcCCCCCCCCCCCCCccccCCCCCCCccccccccCCCCcccCCCcccC
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSMM 80 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~~~~~~~~~~~~~~~~~~~tPCsp~dpga~ems~~di~~~~l~~P~vt~~ 80 (89)
|+||||+||.+||++|+|.++|+...+.||+.+..... ....|+||+++++++.+++|.+++.+++..++|+++
T Consensus 249 t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 322 (355)
T 2qp9_X 249 TEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD------ETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIK 322 (355)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----------CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc------cccccCcCCccccchhhcccccccccccccCCccHH
Confidence 68999999999999999999999999999987654321 123589999999999999999999999999999999
Q ss_pred cccccc
Q psy3811 81 PGQHEN 86 (89)
Q Consensus 81 Df~~a~ 86 (89)
||+.|.
T Consensus 323 df~~Al 328 (355)
T 2qp9_X 323 DFLKAI 328 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
No 5
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.71 E-value=6.5e-09 Score=65.74 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=26.9
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~ 33 (89)
|+|||||||.+||++|+|.+||+. ....+|..+
T Consensus 42 T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~A 77 (86)
T 2krk_A 42 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 77 (86)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 789999999999999999999985 233555543
No 6
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.70 E-value=7.9e-09 Score=65.21 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh---hhhhhhhhc
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ---SATHFVRTS 34 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~---~a~~f~~~~ 34 (89)
|+||||+||.+||++|+|.+||+.. ...||..+.
T Consensus 32 t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al 68 (88)
T 3vlf_B 32 CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAV 68 (88)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 7999999999999999999999854 346776653
No 7
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.69 E-value=4.8e-09 Score=64.81 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhhc
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRTS 34 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~~ 34 (89)
|+|||||||.++|++|+|.+||+. ....||..+.
T Consensus 32 t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al 68 (83)
T 3aji_B 32 PDKISGADINSICQESGMLAVRENRYIVLAKDFEKAY 68 (83)
T ss_dssp SCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 789999999999999999999975 3457777654
No 8
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.64 E-value=1.4e-08 Score=62.98 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhhc
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRTS 34 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~~ 34 (89)
|+||||+||.+||++|+|.+||+- ....||..+.
T Consensus 29 t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al 65 (82)
T 2dzn_B 29 NDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAY 65 (82)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 789999999999999999999975 3446777654
No 9
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.62 E-value=1.7e-08 Score=61.75 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV 24 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~ 24 (89)
|+||||+||.++|++|+|.++|+-
T Consensus 34 t~G~SGADi~~l~~eA~~~a~~~~ 57 (78)
T 3kw6_A 34 MPGASGAEVKGVCTEAGMYALRER 57 (78)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhC
Confidence 799999999999999999999974
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.56 E-value=2.3e-08 Score=84.26 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=18.5
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFVR 32 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~~ 32 (89)
|+||||+||.+||++|+|.+||+...+..++.
T Consensus 679 t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~ 710 (806)
T 3cf2_A 679 TNGFSGADLTEICQRACKLAIRESIESEIRRE 710 (806)
T ss_dssp -------CHHHHHHHHHHHHHHHHHC------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 78999999999999999999999987766554
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.77 E-value=9.3e-06 Score=59.32 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
|+||||+||..||++|+|.++|+..
T Consensus 214 ~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 214 CDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999864
No 12
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=1.8e-05 Score=62.36 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=27.1
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh---hhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ---SATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~---~a~~f~~~ 33 (89)
|+||||+||.+||++|+|.++|+-. ...||..+
T Consensus 350 t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~A 385 (405)
T 4b4t_J 350 MNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELA 385 (405)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 7899999999999999999999742 23566554
No 13
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=2.9e-05 Score=61.19 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh---hhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ---SATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~---~a~~f~~~ 33 (89)
|+||||+||.++|++|+|.++|+-. ...||..+
T Consensus 375 t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A 410 (428)
T 4b4t_K 375 NDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEA 410 (428)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 7899999999999999999999742 34667654
No 14
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=3.5e-05 Score=61.48 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=27.6
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh---hhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ---SATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~---~a~~f~~~ 33 (89)
|+||||+||.+||++|+|.++|+-. ..+||..+
T Consensus 384 T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~A 419 (437)
T 4b4t_I 384 KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQA 419 (437)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 7899999999999999999999743 34677654
No 15
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=4.1e-05 Score=60.60 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=27.0
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh---hhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ---SATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~---~a~~f~~~ 33 (89)
|+||||+||.+||++|+|.++|+-. ...||..+
T Consensus 383 t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~A 418 (437)
T 4b4t_L 383 SDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKA 418 (437)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 7899999999999999999998743 33566543
No 16
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=4.3e-05 Score=60.41 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=28.2
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh---hhhhhhhhc
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ---SATHFVRTS 34 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~---~a~~f~~~~ 34 (89)
|+||||+||.+||++|+|.++|+-. ...||..+.
T Consensus 383 t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al 419 (434)
T 4b4t_M 383 TDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGI 419 (434)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 7899999999999999999999753 336776643
No 17
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=5e-05 Score=60.95 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=27.1
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh---hhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ---SATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~---~a~~f~~~ 33 (89)
|+||||+||.+||++|+|.++|+-. ...||..+
T Consensus 411 T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~A 446 (467)
T 4b4t_H 411 CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKA 446 (467)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 7899999999999999999998643 34667554
No 18
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.82 E-value=0.00032 Score=59.23 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSA 27 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a 27 (89)
|+||||+||..||++|+|..+|+....
T Consensus 403 T~GfsgaDL~~Lv~eA~~~A~~r~~~~ 429 (806)
T 3cf2_A 403 THGHVGADLAALCSEAALQAIRKKMDL 429 (806)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 789999999999999999999987643
No 19
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.68 E-value=0.00072 Score=56.32 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSATHFV 31 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~~f~ 31 (89)
|+||||+||..+|++|++.++|+...+...+
T Consensus 679 t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~ 709 (806)
T 1ypw_A 679 TNGFSGADLTEICQRACKLAIRESIESEIRR 709 (806)
T ss_dssp GSSSCCHHHHHHHHHHHHHHHSCC-------
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999999999887654443
No 20
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.28 E-value=0.0028 Score=46.11 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQSAT 28 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~a~ 28 (89)
|+||||+||.++|++|++.++++.....
T Consensus 217 ~~g~sg~dl~~l~~~a~~~a~~~~~~~~ 244 (301)
T 3cf0_A 217 TNGFSGADLTEICQRACKLAIRESIESE 244 (301)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999886554
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.80 E-value=0.0044 Score=46.25 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=23.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
|+||||+||..||++|++.++|++.
T Consensus 283 t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 283 SDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp TTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999875
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.48 E-value=0.0071 Score=42.96 Aligned_cols=25 Identities=32% Similarity=0.707 Sum_probs=23.2
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
|+||+|+||..||++|++..+|++.
T Consensus 221 ~~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 221 TDGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999874
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.05 E-value=0.014 Score=40.75 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCCCchhhHHHHHHHHhhhHHHh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRL 23 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~ 23 (89)
|+||+|+||.++|++|++..++.
T Consensus 217 ~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 217 TPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999988874
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.54 E-value=0.042 Score=38.31 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=25.9
Q ss_pred CCCCchhhHHHHHHHHhhhHHHh---hhhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRL---VQSATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~---~~~a~~f~~~ 33 (89)
|.|||+.||.++|++|++..++. .....||..+
T Consensus 213 ~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a 248 (257)
T 1lv7_A 213 TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKA 248 (257)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 57999999999999999998864 2344566554
No 25
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.40 E-value=0.032 Score=38.40 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~ 33 (89)
|.||+|+||..+|++|++..+++- ....+|+.+
T Consensus 210 ~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a 245 (262)
T 2qz4_A 210 TPGFSGADIANICNEAALHAAREGHTSVHTLNFEYA 245 (262)
T ss_dssp CTTCCHHHHHHHHHHHHTC--------CCBCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 579999999999999999988652 334455543
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.34 E-value=0.045 Score=38.82 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCCCchhhHHHHHHHHhhhHHHh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRL 23 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~ 23 (89)
|+||+|+||.++|++|++..+++
T Consensus 241 ~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 241 TPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999988764
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.91 E-value=0.06 Score=42.52 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
|.||||+||..||++|++..+|+..
T Consensus 403 t~g~s~~dL~~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 403 THGHVGADLAALCSEAALQAIRKKM 427 (489)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcc
Confidence 6799999999999999999999864
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.55 E-value=0.064 Score=40.08 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=23.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQ 25 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~ 25 (89)
|+||+|+||..||++|++..+|++.
T Consensus 314 ~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 314 TDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp TTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 5799999999999999999999875
No 29
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.08 E-value=0.04 Score=38.43 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCCCchhhHHHHHHHHhhhHHHh---hhhhhhhhhhc
Q psy3811 1 MYSYSGADISIVVRDALMQPVRL---VQSATHFVRTS 34 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~---~~~a~~f~~~~ 34 (89)
|+||+|+||.++|++|++..++. .....+|..+.
T Consensus 214 ~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 250 (268)
T 2r62_A 214 TAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV 250 (268)
T ss_dssp SCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 57999999999999999988743 34456666543
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.03 E-value=0.1 Score=36.58 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.3
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhh---hhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLV---QSATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~---~~a~~f~~~ 33 (89)
|+||+|.||..+|++|.+..+++. ....+|+.+
T Consensus 219 ~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~a 254 (285)
T 3h4m_A 219 TEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKA 254 (285)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHH
Confidence 679999999999999999998874 334555544
No 31
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.88 E-value=0.14 Score=40.55 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=25.5
Q ss_pred CCCCchhhHHHHHHHHhhhHHHh---hhhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRL---VQSATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~---~~~a~~f~~~ 33 (89)
|.||||+||.++|++|++...|. .....+|..+
T Consensus 217 t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~a 252 (476)
T 2ce7_A 217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEEA 252 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 67999999999999999988864 2344556543
No 32
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.34 E-value=0.16 Score=40.41 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=25.8
Q ss_pred CCCCchhhHHHHHHHHhhhHHHh---hhhhhhhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRL---VQSATHFVRT 33 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~---~~~a~~f~~~ 33 (89)
|.||+|+||.++|++|++..+|. .....+|..+
T Consensus 232 t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~a 267 (499)
T 2dhr_A 232 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 267 (499)
T ss_dssp SCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Confidence 67999999999999999988863 3444566554
No 33
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.83 E-value=1.9 Score=35.77 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCCchhhHHHHHHHHhhhHHHhhhh
Q psy3811 1 MYSYSGADISIVVRDALMQPVRLVQS 26 (89)
Q Consensus 1 teGySGsDi~~l~reA~m~pvr~~~~ 26 (89)
|.||+|+|+..+|++|++..+|+...
T Consensus 403 t~g~~g~dl~~l~~ea~~~a~r~~~~ 428 (806)
T 1ypw_A 403 THGHVGADLAALCSEAALQAIRKKMD 428 (806)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcCcchHHHHHHHHHHHHHHHhhhcc
Confidence 57999999999999999999987543
Done!