RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3811
(89 letters)
>gnl|CDD|204202 pfam09336, Vps4_C, Vps4 C terminal oligomerisation domain. This
domain is found at the C terminal of ATPase proteins
involved in vacuolar sorting. It forms an alpha helix
structure and is required for oligomerisation.
Length = 62
Score = 56.5 bits (137), Expect = 2e-12
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 48 LLTPCSPSTPGAVEMNFMDVPSDKLLEPPVSM 79
LTPCSP PGA+EM +MD+ DKLLEPP++M
Sbjct: 1 KLTPCSPGDPGAIEMTWMDIEEDKLLEPPLTM 32
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 30.2 bits (68), Expect = 0.098
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 4 YSGADISIVVRDALMQPVR 22
YSGADI+ +VR+A ++ +R
Sbjct: 446 YSGADIAALVREAALEALR 464
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 27.6 bits (61), Expect = 0.96
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 4 YSGADISIVVRDALMQPVRLV 24
Y+GADI V R+A M +R
Sbjct: 656 YTGADIEAVCREAAMAALRES 676
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 27.3 bits (61), Expect = 1.2
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 12 VVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMNF 64
V D + P L S + SG + +++ +LL S G+VE++
Sbjct: 1900 VWSDFEIGPAYLNSS---QLIASGLTNRKNFESLSELLDLVSNLEVGSVELSI 1949
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 26.1 bits (57), Expect = 2.8
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 7 ADISIVVRDALMQPVRLVQSATHFVRTSGPSPV 39
+ +++ VR+A + P R++Q A H +R+ P PV
Sbjct: 126 SKMAVTVREAALVP-RVLQQAFHLMRSGRPGPV 157
>gnl|CDD|236057 PRK07578, PRK07578, short chain dehydrogenase; Provisional.
Length = 199
Score = 25.9 bits (58), Expect = 2.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 7 ADISIVVRDALMQPVRLVQSATHFVRTSG 35
D ++ ++ LM V LV H++ G
Sbjct: 77 EDFNVGLQSKLMGQVNLVLIGQHYLNDGG 105
>gnl|CDD|213331 cd05129, RasGAP_RAP6, Ras-GTPase Activating Domain of
Rab5-activating protein 6. Rab5-activating protein 6
(RAP6) is an endosomal protein with a role in the
regulation of receptor-mediated endocytosis. RAP6
contains a Vps9 domain, which is involved in the
activation of Rab5, and a Ras GAP domain (RGD). Rab5 is
a small GTPase required for the control of the endocytic
route, and its activity is regulated by guanine
nucleotide exchange factor, such as Rabex5, and GAPs,
such as RN-tre. Human Rap6 protein is localized on the
plasma membrane and on the endosome. RAP6 binds to Rab5
and Ras through the Vps9 and RGD domains, respectively.
Length = 365
Score = 25.8 bits (57), Expect = 3.6
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 5 SGADISIVVRDALMQPVRLVQSATHFVRTSGPSPVDP 41
S A IS V R LMQ +++Q + DP
Sbjct: 246 SDAPISEVARHNLMQVAQILQVLAL----TEFESPDP 278
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 25.6 bits (56), Expect = 3.8
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 10 SIVVRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVD----------DLLTPCSPSTPGA 59
++ VR+ + P R++Q A H +R+ P PV D D+ P P A
Sbjct: 130 AVTVREPALVP-RVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDMYEPLPVYKPAA 188
Query: 60 VEM 62
+
Sbjct: 189 TRV 191
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 25.0 bits (55), Expect = 6.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 40 DPSKTVDDLLTPCSPSTPGAV 60
DP+ VD ++ + PGAV
Sbjct: 285 DPTYEVDGVVHYGVANMPGAV 305
>gnl|CDD|144961 pfam01561, Hanta_G2, Hantavirus glycoprotein G2. The medium (M)
genome segment of hantaviruses (family Bunyaviridae)
encodes the two virion glycoproteins. G1 and G2, as a
precursor protein in the complementary sense RNA.
Length = 486
Score = 25.2 bits (55), Expect = 6.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 23 LVQSATHFVRTSGPSPVDPSKTVDDLLTPC 52
L +A H R +G + +D K DD C
Sbjct: 407 LTAAAPHLDRVTGYNEIDSDKVYDDGAPEC 436
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 24.8 bits (54), Expect = 8.1
Identities = 13/51 (25%), Positives = 14/51 (27%)
Query: 13 VRDALMQPVRLVQSATHFVRTSGPSPVDPSKTVDDLLTPCSPSTPGAVEMN 63
Q + TH TS PVDP K D SP
Sbjct: 310 ASLIRRQKAPYIPKITHPTDTSNFDPVDPEKLRSDDSGESSPDRNVKPNNR 360
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.382
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,407,024
Number of extensions: 339457
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 16
Length of query: 89
Length of database: 10,937,602
Length adjustment: 57
Effective length of query: 32
Effective length of database: 8,409,424
Effective search space: 269101568
Effective search space used: 269101568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)