RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3811
         (89 letters)



>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
           N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
           hamster (Cricetulus griseus) [TaxId: 10029]}
          Length = 246

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)

Query: 4   YSGADISIVVRDALM--------QPVRLVQSATHFVRTSGPSPVD 40
             G  + I ++  LM         P   V+     +R  G SP+D
Sbjct: 202 VKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGASPLD 246


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 32.5 bits (73), Expect = 0.003
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 4   YSGADISIVVRDALMQPVR-LVQSATHFVRTSGPSPVDPSKTVDDLL 49
           +SGAD++ + + A    +R  ++S     R    +P       DD +
Sbjct: 212 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 258


>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 31.4 bits (71), Expect = 0.007
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 4   YSGADISIVVRDALMQPVR 22
           + GAD+  ++ +A +   R
Sbjct: 213 FVGADLENLLNEAALLAAR 231


>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 31.1 bits (69), Expect = 0.011
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 1   MYSYSGADISIVVRDALMQPVR 22
            + + GAD++ +  +A +Q +R
Sbjct: 203 THGHVGADLAALCSEAALQAIR 224


>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 31.0 bits (70), Expect = 0.011
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 4   YSGADISIVVRDALMQPVR 22
           +SGAD++ +V +A +   R
Sbjct: 216 FSGADLANLVNEAALFAAR 234


>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 237

 Score = 22.9 bits (49), Expect = 7.3
 Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)

Query: 51 PCSPSTPGAVEMNFMDVPS-DKLLE 74
          P    T G  ++   D+    +L +
Sbjct: 35 PAKTKTAGLRKLKKEDIDQVFELFK 59


>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 293

 Score = 22.9 bits (49), Expect = 8.3
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 66  DVPSDKLLEPPVSMMPGQHENNRK 89
           D PS++ L   V +   Q E  R+
Sbjct: 270 DAPSEQALLSLVPV---QRELLRR 290


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.382 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 316,558
Number of extensions: 11982
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 8
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.2 bits)