BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3814
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R658|VPS4B_PONAB Vacuolar protein sorting-associated protein 4B OS=Pongo abelii
GN=VPS4B PE=2 SV=1
Length = 444
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 37/43 (86%)
Query: 23 EDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
E +S+DP+KKK+Q L+GAIV+E+PNVKW+DVAGLE AK+ K
Sbjct: 105 EGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALK 147
>sp|P46467|VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B OS=Mus musculus
GN=Vps4b PE=1 SV=2
Length = 444
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%), Gaps = 3/52 (5%)
Query: 17 DKKESDED---DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
D+K +D D +S+DP+KKK+Q L+GAIV+E+PNVKW+DVAGLE AK+ K
Sbjct: 96 DEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALK 147
>sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens
GN=VPS4B PE=1 SV=2
Length = 444
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 37/43 (86%)
Query: 23 EDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
E +S+DP+KKK+Q L+GAIV+E+PNVKW+DVAGLE AK+ K
Sbjct: 105 EGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALK 147
>sp|Q0VD48|VPS4B_BOVIN Vacuolar protein sorting-associated protein 4B OS=Bos taurus
GN=VPS4B PE=2 SV=1
Length = 444
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 37/43 (86%)
Query: 23 EDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
E +S+DP+KKK+Q L+GAIV+E+PNVKW+DVAGLE AK+ K
Sbjct: 105 EGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALK 147
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus
GN=Vps4a PE=2 SV=1
Length = 437
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 13 QNRDDKKESDED-DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
+N+ + K SD D + ++P+KKK+Q L GA+VMEKPN++W DVAGLE AK+ K
Sbjct: 87 ENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALK 140
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 13 QNRDDKKESDED-DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
+N+ + K SD D + ++P+KKK+Q L GA+VMEKPN++W DVAGLE AK+ K
Sbjct: 87 ENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALK 140
>sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens
GN=VPS4A PE=1 SV=1
Length = 437
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 13 QNRDDKKESDED-DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
+N+ + K SD D + ++P+KKK+Q L GA+VMEKPN++W DVAGLE AK+ K
Sbjct: 87 ENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALK 140
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps4 PE=3 SV=1
Length = 432
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 3 EVVQSSEVGFQNRDDKKESDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKK 62
++ S V N + +++ D D KK+++ L AI++EKPNV+W D+AGLE AK+
Sbjct: 80 QISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAILVEKPNVRWDDIAGLENAKE 139
Query: 63 QKKKN 67
K+
Sbjct: 140 ALKET 144
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1
SV=1
Length = 437
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 14 NRDDKKESDED--DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
N +KK S E+ D+ D KK++ L AI+ EKPNVKW DVAGLE AK+ K
Sbjct: 93 NGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALK 146
>sp|Q54PT2|VPS4_DICDI Vacuolar protein sorting-associated protein 4 OS=Dictyostelium
discoideum GN=vps4 PE=3 SV=1
Length = 444
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 32 KKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
KK +L +IV KPNVKW DVAGL AK+ K
Sbjct: 115 KKRNDSLSSSIVTTKPNVKWDDVAGLYQAKEYLK 148
>sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit A1 OS=Strongylocentrotus
purpuratus GN=KATNA1 PE=1 SV=1
Length = 516
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 11 GFQNRDDKKESDEDDSE---DPDK--KKMQANLEGAIVMEKPNVKWTDVAGLEAAKK 62
G ++D K S E+ E DP K + NLE IV PNV W D+AGL AK+
Sbjct: 188 GKSDKDKKAPSGEEGDEKKFDPAGYDKDLVENLERDIVQRNPNVHWADIAGLTEAKR 244
>sp|B5X3X5|KTNA1_SALSA Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1
PE=2 SV=1
Length = 486
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 19 KESDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
KE D + DK ++A LE I+ + PNVKW D+A LE AKK K
Sbjct: 172 KEVKRFDGQGYDKDLIEA-LERDIISQNPNVKWDDIADLEEAKKLLK 217
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 43 VMEKPNVKWTDVAGLEAAKKQ 63
V+E PN WTD+ GLE+ KK+
Sbjct: 465 VVEVPNTTWTDIGGLESVKKE 485
>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC48 PE=1 SV=1
Length = 780
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 7 SSEVGFQNRDDKKESDEDDSEDPDKKKMQA------NLEGAI-----------VMEKPNV 49
SE Q +K + DSE D K + + N AI V++ PNV
Sbjct: 419 CSEAALQQIREKLPQIDLDSEKIDAKVLASLKVNSENFRYAIEHTDPSSLRETVIQSPNV 478
Query: 50 KWTDVAGLEAAKKQKKKN 67
KW+D+ GLE K++ ++
Sbjct: 479 KWSDIGGLEQVKQELRET 496
>sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana
GN=AAA1 PE=1 SV=1
Length = 523
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 11 GFQNRDDKKESDEDDSEDPDKKK---------MQANLEGAIVMEKPNVKWTDVAGLEAAK 61
G ++ +K ES D+ED K+ + A LE ++ P V+W DVAGL AK
Sbjct: 189 GAASKSNKAESMNGDAEDGKSKRGLYEGPDEDLAAMLERDVLDSTPGVRWDDVAGLSEAK 248
Query: 62 K 62
+
Sbjct: 249 R 249
>sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus
GN=Katnal2 PE=2 SV=2
Length = 539
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 42 IVMEKPNVKWTDVAGLEAAKKQKK 65
I + PN+KW D+ GL+AAK+ K
Sbjct: 245 IYLHNPNIKWNDIIGLDAAKQLVK 268
>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus
GN=Katna1 PE=1 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 ESDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKK 62
E+++ DS DK ++A LE I+ + PNV+W D+A L AKK
Sbjct: 178 EANKFDSTGYDKDLVEA-LERDIISQNPNVRWYDIADLVEAKK 219
>sp|Q4R407|KTNA1_MACFA Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis
GN=KATNA1 PE=2 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 20 ESDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
E+++ DS DK ++A LE I+ + PNV+W D+A L AKK K
Sbjct: 178 ETNKFDSTGYDKDLVEA-LERDIISQNPNVRWDDIADLVEAKKLLK 222
>sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1
PE=1 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 20 ESDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
E+++ DS DK ++A LE I+ + PNV+W D+A L AKK K
Sbjct: 178 ETNKFDSTGYDKDLVEA-LERDIISQNPNVRWDDIADLVEAKKLLK 222
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 42 IVMEKPNVKWTDVAGLEAAKKQ 63
+++E PNVKW D+ GLE AK++
Sbjct: 445 VLVEVPNVKWEDIGGLEHAKQE 466
>sp|Q9PUL2|KTNA1_XENLA Katanin p60 ATPase-containing subunit A1 (Fragment) OS=Xenopus
laevis GN=katna1 PE=2 SV=1
Length = 486
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 25 DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
D DK ++A LE I+ + PN++W D+A LE AKK K
Sbjct: 180 DGSGYDKDLIEA-LERDIISQNPNIRWDDIADLEEAKKLLK 219
>sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis
GN=katna1 PE=2 SV=1
Length = 492
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 25 DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
D DK ++A LE I+ + PN++W D+A LE AKK K
Sbjct: 184 DGTGYDKDLIEA-LERDIISQNPNIRWDDIADLEEAKKLLK 223
>sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus
tropicalis GN=katnal2 PE=2 SV=1
Length = 542
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 28 DPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKK 66
+ + +++ A + I ++ PNV+W D+ GL+AAK+ K+
Sbjct: 234 NSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKE 272
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 43 VMEKPNVKWTDVAGLEAAKKQKKKN 67
V+E PNV+W D+ GLE K++ ++
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRET 512
>sp|Q3B8D5|KATL2_XENLA Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis
GN=katnal2 PE=2 SV=1
Length = 505
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 28 DPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKK 66
+ + +++ A + I ++ PNV+W D+ GL+AAK+ K+
Sbjct: 234 NSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKE 272
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 43 VMEKPNVKWTDVAGLEAAKK------QKKKNHP 69
V+E PNV+W D+ GLE K+ Q +HP
Sbjct: 490 VVEVPNVRWEDIGGLEEVKRELIESVQYPVDHP 522
>sp|Q8RY16|PEX6_ARATH Peroxisome biogenesis protein 6 OS=Arabidopsis thaliana GN=PEX6
PE=1 SV=1
Length = 941
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 3 EVVQSSEVGFQNRDDKKESDEDDSEDPDK-KKMQANLEGAIVMEKPNVKWTDVAGLEAAK 61
++ Q+S++ N +K + ED ++ D+ KK A+ GA + PNVKW DV GLE K
Sbjct: 612 DIHQASQI--DNSTEKLTAKEDFTKALDRSKKRNASALGA--PKVPNVKWDDVGGLEDVK 667
>sp|Q9WV86|KTNA1_MOUSE Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1
PE=1 SV=1
Length = 491
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 20 ESDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKK 62
E+++ D DK ++A LE I+ + PNV+W D+A L AKK
Sbjct: 178 EANKFDGTGYDKDLVEA-LERDIISQNPNVRWYDIADLVEAKK 219
>sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens
GN=KATNAL2 PE=1 SV=3
Length = 538
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 28 DPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKK 66
+ + +++ A + I + PN+KW D+ GL+AAK+ K+
Sbjct: 230 NSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKE 268
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 42 IVMEKPNVKWTDVAGLEAAKKQKK 65
+++E PNVKW D+ GLE K++ +
Sbjct: 442 VLVEVPNVKWEDIGGLEEVKQELR 465
>sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1
PE=2 SV=1
Length = 485
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 38 LEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
LE I+ + PNV W D+A LE AKK K
Sbjct: 190 LERDIISQNPNVTWDDIADLEEAKKLLK 217
>sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana
GN=CDC48A PE=1 SV=1
Length = 809
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 43 VMEKPNVKWTDVAGLEAAKKQ 63
V+E PNV W D+ GLE K++
Sbjct: 471 VVEVPNVSWNDIGGLENVKRE 491
>sp|Q1HGK7|KTNA1_CHICK Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1
PE=2 SV=1
Length = 492
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 25 DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
DS DK ++A LE I+ + PN++W D+A L AKK K
Sbjct: 184 DSTGYDKDLVEA-LERDIISQNPNIRWDDIADLVEAKKLLK 223
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 43 VMEKPNVKWTDVAGLEAAKKQ 63
V+E PNV W D+ GLE K++
Sbjct: 471 VVEVPNVSWEDIGGLENVKRE 491
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 43 VMEKPNVKWTDVAGLEAAKKQ 63
V+E PNV W D+ GLE K++
Sbjct: 472 VVEVPNVSWEDIGGLENVKRE 492
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 43 VMEKPNVKWTDVAGLEAAKKQ 63
V+E PNV W D+ GLE K++
Sbjct: 472 VVEVPNVSWEDIGGLENVKRE 492
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 43 VMEKPNVKWTDVAGLEAAKKQ 63
V+E PNV W D+ GLE K++
Sbjct: 472 VVEVPNVSWEDIGGLENVKRE 492
>sp|Q8NB90|SPAT5_HUMAN Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1
SV=3
Length = 893
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 42 IVMEKPNVKWTDVAGLEAAK 61
I ++ PNV W+D+ GLE+ K
Sbjct: 617 IAIDVPNVSWSDIGGLESIK 636
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 42 IVMEKPNVKWTDVAGLEAAKKQKKKN 67
+++E PNV W D+ GLE K++ K+
Sbjct: 457 VMVEVPNVHWDDIGGLEDVKREIKET 482
>sp|O60058|AFG2_SCHPO ATPase family gene 2 protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=afg2 PE=3 SV=1
Length = 809
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 42 IVMEKPNVKWTDVAGLEAAKKQKKKN 67
+ME PNV W+D+ G E K++ K++
Sbjct: 538 FMMESPNVHWSDIGGQEEVKQKLKES 563
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 32 KKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65
K +Q +L + +E P V W D+ GL+ K+Q +
Sbjct: 467 KSIQPSLLREVYVEVPKVNWNDIGGLDNVKQQLR 500
>sp|Q5U3S1|KATL1_DANRE Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio
GN=katnal1 PE=2 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 38 LEGAIVMEKPNVKWTDVAGLEAAKK 62
LE IV PN+ W D+A LE AKK
Sbjct: 192 LERDIVSRNPNIHWDDIADLEDAKK 216
>sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus
GN=Katnal1 PE=1 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 13 QNRDDKKESD----EDDSEDP-------DKKKMQANLEGAIVMEKPNVKWTDVAGLEAAK 61
+ RDDK + DSE P DK ++A LE IV P++ W D+A LE AK
Sbjct: 157 RGRDDKARKNVQDGASDSEIPKFDGAGYDKDLVEA-LERDIVSRNPSIHWDDIADLEEAK 215
Query: 62 K 62
K
Sbjct: 216 K 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.122 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,656,473
Number of Sequences: 539616
Number of extensions: 889960
Number of successful extensions: 6934
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 6664
Number of HSP's gapped (non-prelim): 242
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)