Query psy3814
Match_columns 69
No_of_seqs 117 out of 652
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 18:05:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0739|consensus 99.3 1.7E-12 3.7E-17 99.8 4.9 43 27-69 108-150 (439)
2 KOG0738|consensus 98.9 1.9E-09 4.1E-14 84.6 4.4 44 25-68 185-228 (491)
3 KOG0730|consensus 97.7 1E-05 2.2E-10 66.3 0.9 37 33-69 415-451 (693)
4 KOG0736|consensus 97.7 4.3E-05 9.4E-10 64.2 4.3 38 32-69 651-689 (953)
5 KOG0740|consensus 97.5 5.5E-05 1.2E-09 59.2 2.6 39 31-69 132-170 (428)
6 KOG0733|consensus 97.1 0.00016 3.5E-09 59.9 1.1 37 32-68 491-527 (802)
7 COG1222 RPT1 ATP-dependent 26S 96.2 0.0028 6E-08 49.7 1.8 27 43-69 142-168 (406)
8 PTZ00454 26S protease regulato 96.2 0.002 4.4E-08 49.2 1.0 27 43-69 136-162 (398)
9 COG0464 SpoVK ATPases of the A 95.8 0.0073 1.6E-07 46.1 2.8 29 41-69 231-259 (494)
10 KOG0727|consensus 95.4 0.0074 1.6E-07 46.6 1.4 26 44-69 147-172 (408)
11 TIGR01243 CDC48 AAA family ATP 95.3 0.0069 1.5E-07 48.8 1.0 30 39-68 440-469 (733)
12 KOG0737|consensus 94.6 0.017 3.6E-07 45.2 1.2 27 42-68 82-108 (386)
13 TIGR03689 pup_AAA proteasome A 94.5 0.017 3.8E-07 45.9 1.3 30 39-68 169-198 (512)
14 PRK03992 proteasome-activating 94.1 0.018 3.9E-07 43.4 0.5 29 40-68 119-147 (389)
15 KOG0735|consensus 93.8 0.043 9.3E-07 46.7 2.3 38 32-69 646-684 (952)
16 PTZ00361 26 proteosome regulat 93.5 0.031 6.7E-07 43.6 1.0 27 43-69 174-200 (438)
17 TIGR01242 26Sp45 26S proteasom 92.8 0.048 1.1E-06 40.2 1.1 27 42-68 112-138 (364)
18 KOG0734|consensus 90.3 0.12 2.5E-06 43.1 0.8 23 47-69 299-321 (752)
19 KOG0726|consensus 90.1 0.19 4E-06 39.6 1.8 26 44-69 177-202 (440)
20 TIGR01241 FtsH_fam ATP-depende 89.5 0.14 3.1E-06 39.4 0.7 26 43-68 46-71 (495)
21 KOG0731|consensus 88.4 0.27 5.8E-06 41.4 1.6 24 45-68 304-327 (774)
22 KOG0732|consensus 86.0 0.41 8.8E-06 41.7 1.5 27 42-68 255-281 (1080)
23 TIGR01243 CDC48 AAA family ATP 83.7 0.52 1.1E-05 38.2 1.1 23 46-68 172-194 (733)
24 KOG0652|consensus 81.0 1 2.3E-05 35.1 1.8 27 42-68 161-187 (424)
25 CHL00195 ycf46 Ycf46; Provisio 78.8 2.3 5E-05 33.7 3.1 21 46-66 222-242 (489)
26 KOG0729|consensus 78.7 1.3 2.7E-05 34.8 1.6 27 43-69 168-194 (435)
27 COG0465 HflB ATP-dependent Zn 73.5 1.7 3.6E-05 35.7 1.1 23 46-68 144-166 (596)
28 CHL00176 ftsH cell division pr 70.3 2.4 5.2E-05 34.6 1.3 23 46-68 177-199 (638)
29 KOG4434|consensus 49.1 18 0.00038 29.3 2.7 36 14-49 361-397 (520)
30 TIGR02881 spore_V_K stage V sp 44.7 9.9 0.00021 26.7 0.7 17 51-67 5-21 (261)
31 CHL00181 cbbX CbbX; Provisiona 39.4 13 0.00028 27.1 0.6 18 51-68 22-39 (287)
32 KOG4009|consensus 36.8 27 0.00058 24.5 1.8 32 32-65 102-133 (156)
33 KOG0728|consensus 35.6 17 0.00038 28.4 0.8 34 36-69 130-164 (404)
34 PRK14963 DNA polymerase III su 34.8 17 0.00037 28.8 0.7 27 42-68 4-30 (504)
35 KOG0733|consensus 34.7 21 0.00045 30.6 1.2 24 45-68 183-206 (802)
36 COG1223 Predicted ATPase (AAA+ 30.1 25 0.00053 27.5 0.8 19 46-64 115-133 (368)
37 TIGR02397 dnaX_nterm DNA polym 24.4 41 0.00089 24.0 1.1 23 46-68 8-30 (355)
38 COG3783 CybC Soluble cytochrom 23.7 53 0.0011 21.6 1.4 42 25-66 46-87 (100)
39 PF06820 Phage_fiber_C: Putati 22.1 25 0.00054 21.4 -0.3 12 47-58 53-64 (64)
40 TIGR02880 cbbX_cfxQ probable R 21.7 46 0.001 24.0 0.9 16 53-68 23-38 (284)
No 1
>KOG0739|consensus
Probab=99.32 E-value=1.7e-12 Score=99.82 Aligned_cols=43 Identities=56% Similarity=0.879 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHhhchhccCCCccceeccChHHHHHHHHhcCC
Q psy3814 27 EDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 27 ~~~e~k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+++|.++|++.|++.|+.++|||+|+||+||+.||++|+|||.
T Consensus 108 ~~pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVI 150 (439)
T KOG0739|consen 108 DEPEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVI 150 (439)
T ss_pred CChhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhhee
Confidence 5578999999999999999999999999999999999999983
No 2
>KOG0738|consensus
Probab=98.88 E-value=1.9e-09 Score=84.64 Aligned_cols=44 Identities=34% Similarity=0.471 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHhhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 25 DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 25 ~~~~~e~k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+........|++.+.++|+..+|+|+|+||+||+.||++|+|||
T Consensus 185 f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAV 228 (491)
T KOG0738|consen 185 FDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAV 228 (491)
T ss_pred CCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHH
Confidence 33334456999999999999999999999999999999999998
No 3
>KOG0730|consensus
Probab=97.73 E-value=1e-05 Score=66.34 Aligned_cols=37 Identities=30% Similarity=0.584 Sum_probs=32.3
Q ss_pred HHHHHHhhchhccCCCccceeccChHHHHHHHHhcCC
Q psy3814 33 KMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 33 ~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
.......|+++.+.|+|+|+|||||+..|+.|+++|+
T Consensus 415 ~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~ 451 (693)
T KOG0730|consen 415 GIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVE 451 (693)
T ss_pred cCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHh
Confidence 3445567888899999999999999999999999985
No 4
>KOG0736|consensus
Probab=97.70 E-value=4.3e-05 Score=64.19 Aligned_cols=38 Identities=34% Similarity=0.562 Sum_probs=30.0
Q ss_pred HHHHHHHhhchhc-cCCCccceeccChHHHHHHHHhcCC
Q psy3814 32 KKMQANLEGAIVM-EKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 32 k~l~~~I~~eIv~-~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
.+++......|-. +.|+|+|+|||||+.+|+.|.++|.
T Consensus 651 s~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIq 689 (953)
T KOG0736|consen 651 SRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQ 689 (953)
T ss_pred HHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhc
Confidence 3455555666665 4599999999999999999998863
No 5
>KOG0740|consensus
Probab=97.54 E-value=5.5e-05 Score=59.15 Aligned_cols=39 Identities=31% Similarity=0.432 Sum_probs=35.5
Q ss_pred HHHHHHHHhhchhccCCCccceeccChHHHHHHHHhcCC
Q psy3814 31 KKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 31 ~k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
...+.+.|.++|+...++|.|+||+||++||++|+|+|.
T Consensus 132 ~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi 170 (428)
T KOG0740|consen 132 DETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVI 170 (428)
T ss_pred cchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhh
Confidence 356888999999999999999999999999999999873
No 6
>KOG0733|consensus
Probab=97.14 E-value=0.00016 Score=59.91 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=32.6
Q ss_pred HHHHHHHhhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 32 KKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 32 k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..++....|+.+...|+|+|+|||||+.++..|+.||
T Consensus 491 ~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI 527 (802)
T KOG0733|consen 491 SKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAI 527 (802)
T ss_pred HhcCcchhcccceecCCCChhhcccHHHHHHHHHHHH
Confidence 3455666899999999999999999999999999887
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0028 Score=49.69 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=25.0
Q ss_pred hccCCCccceeccChHHHHHHHHhcCC
Q psy3814 43 VMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 43 v~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+.++|+|+++|||||+..++.|+|+||
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VE 168 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVE 168 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhc
Confidence 348899999999999999999999996
No 8
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.16 E-value=0.002 Score=49.19 Aligned_cols=27 Identities=30% Similarity=0.641 Sum_probs=24.1
Q ss_pred hccCCCccceeccChHHHHHHHHhcCC
Q psy3814 43 VMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 43 v~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+.+.|+|+|+||+||+..|+.|+++|+
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~ 162 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVE 162 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHH
Confidence 457899999999999999999998763
No 9
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0073 Score=46.06 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=26.2
Q ss_pred chhccCCCccceeccChHHHHHHHHhcCC
Q psy3814 41 AIVMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 41 eIv~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
.+....|+|+|.||+||+.+|+.|+++|+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~ 259 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIE 259 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHH
Confidence 56678899999999999999999999874
No 10
>KOG0727|consensus
Probab=95.40 E-value=0.0074 Score=46.60 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=24.5
Q ss_pred ccCCCccceeccChHHHHHHHHhcCC
Q psy3814 44 MEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 44 ~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
.++|.|++.|||||+-.|+.++||||
T Consensus 147 ~ekpdvsy~diggld~qkqeireave 172 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVE 172 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHh
Confidence 47899999999999999999999986
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.31 E-value=0.0069 Score=48.79 Aligned_cols=30 Identities=33% Similarity=0.738 Sum_probs=26.4
Q ss_pred hhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 39 EGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 39 ~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.++++.+.|+++|+||+|++.+|+.|+++|
T Consensus 440 ~~~~~~~~~~~~~~di~g~~~~k~~l~~~v 469 (733)
T TIGR01243 440 IREVLVEVPNVRWSDIGGLEEVKQELREAV 469 (733)
T ss_pred cchhhccccccchhhcccHHHHHHHHHHHH
Confidence 356667889999999999999999999876
No 12
>KOG0737|consensus
Probab=94.56 E-value=0.017 Score=45.18 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.5
Q ss_pred hhccCCCccceeccChHHHHHHHHhcC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
|....-+|+|+||+||+..|++|+|.|
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~V 108 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELV 108 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHH
Confidence 444567899999999999999999987
No 13
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.49 E-value=0.017 Score=45.92 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=25.5
Q ss_pred hhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 39 EGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 39 ~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..-++.+.|+++|+||+||+..++.|+++|
T Consensus 169 ~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v 198 (512)
T TIGR03689 169 EDLVLEEVPDVTYADIGGLDSQIEQIRDAV 198 (512)
T ss_pred hcceeecCCCCCHHHcCChHHHHHHHHHHH
Confidence 344556779999999999999999999876
No 14
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.07 E-value=0.018 Score=43.39 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=24.8
Q ss_pred hchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 40 GAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 40 ~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+..+.+.|++.|+||+||+.+++.|+++|
T Consensus 119 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i 147 (389)
T PRK03992 119 AMEVIESPNVTYEDIGGLEEQIREVREAV 147 (389)
T ss_pred eeeecCCCCCCHHHhCCcHHHHHHHHHHH
Confidence 33456789999999999999999999875
No 15
>KOG0735|consensus
Probab=93.81 E-value=0.043 Score=46.66 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=28.6
Q ss_pred HHHHHHHhhchhccC-CCccceeccChHHHHHHHHhcCC
Q psy3814 32 KKMQANLEGAIVMEK-PNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 32 k~l~~~I~~eIv~~~-p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+.+.+.-.|.|-..+ .+++|.|||||.++|++|+|.++
T Consensus 646 ~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~ 684 (952)
T KOG0735|consen 646 KDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIE 684 (952)
T ss_pred HhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHh
Confidence 445555566664444 55999999999999999998764
No 16
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.54 E-value=0.031 Score=43.58 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred hccCCCccceeccChHHHHHHHHhcCC
Q psy3814 43 VMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 43 v~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+.+.|.++|.||+||+..++.|+++|+
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~ 200 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVE 200 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHH
Confidence 457899999999999999999998763
No 17
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.84 E-value=0.048 Score=40.22 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=23.9
Q ss_pred hhccCCCccceeccChHHHHHHHHhcC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.+.|.+.|+||+||+.+++.|+++|
T Consensus 112 ~~~~~p~~~~~di~Gl~~~~~~l~~~i 138 (364)
T TIGR01242 112 EVEERPNVSYEDIGGLEEQIREIREAV 138 (364)
T ss_pred eeccCCCCCHHHhCChHHHHHHHHHHH
Confidence 345789999999999999999999875
No 18
>KOG0734|consensus
Probab=90.35 E-value=0.12 Score=43.14 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.3
Q ss_pred CCccceeccChHHHHHHHHhcCC
Q psy3814 47 PNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 47 p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
.||+|+||.|.+.||+.|+|.|+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVe 321 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVE 321 (752)
T ss_pred cccccccccChHHHHHHHHHHHH
Confidence 48999999999999999999874
No 19
>KOG0726|consensus
Probab=90.11 E-value=0.19 Score=39.57 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.6
Q ss_pred ccCCCccceeccChHHHHHHHHhcCC
Q psy3814 44 MEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 44 ~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
...|.-+|.||+||+...|.|+|+||
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvE 202 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVE 202 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhc
Confidence 35688999999999999999999996
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.49 E-value=0.14 Score=39.45 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=22.5
Q ss_pred hccCCCccceeccChHHHHHHHHhcC
Q psy3814 43 VMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 43 v~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..+.|+++|+||+|++.+|..|++.+
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~ 71 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIV 71 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHH
Confidence 34579999999999999999998765
No 21
>KOG0731|consensus
Probab=88.40 E-value=0.27 Score=41.44 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred cCCCccceeccChHHHHHHHHhcC
Q psy3814 45 EKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 45 ~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..+.|+|.||||++.||+.|+|.|
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V 327 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFV 327 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHH
Confidence 446699999999999999999976
No 22
>KOG0732|consensus
Probab=86.01 E-value=0.41 Score=41.69 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.6
Q ss_pred hhccCCCccceeccChHHHHHHHHhcC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.-..+|.|+|||||+..+..|+|.|
T Consensus 255 p~~~~~~v~fd~vggl~~~i~~LKEmV 281 (1080)
T KOG0732|consen 255 PLSVDSSVGFDSVGGLENYINQLKEMV 281 (1080)
T ss_pred chhhhcccCccccccHHHHHHHHHHHH
Confidence 445567899999999999999999987
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.70 E-value=0.52 Score=38.16 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.0
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.|+++|+||+|++.+++.|++.|
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i 194 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMV 194 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH
Confidence 48899999999999999998875
No 24
>KOG0652|consensus
Probab=80.96 E-value=1 Score=35.13 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.4
Q ss_pred hhccCCCccceeccChHHHHHHHHhcC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
-+.++|.-.++|||||+...+.|-|||
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAi 187 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAI 187 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHh
Confidence 357899999999999999999999886
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=78.78 E-value=2.3 Score=33.70 Aligned_cols=21 Identities=38% Similarity=0.454 Sum_probs=18.8
Q ss_pred CCCccceeccChHHHHHHHHh
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKK 66 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkE 66 (69)
.++++|+||+||+.+|+.|++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~ 242 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKK 242 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHH
Confidence 378999999999999998875
No 26
>KOG0729|consensus
Probab=78.74 E-value=1.3 Score=34.78 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.8
Q ss_pred hccCCCccceeccChHHHHHHHHhcCC
Q psy3814 43 VMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 43 v~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+.++|.|+++||+|.......|+|-||
T Consensus 168 veekpdvty~dvggckeqieklrevve 194 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVE 194 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHh
Confidence 458999999999999999988988775
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=73.51 E-value=1.7 Score=35.74 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.4
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..+|+|.||+|.+.||+.|.|.|
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiV 166 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELV 166 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHH
Confidence 57899999999999999999976
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=70.26 E-value=2.4 Score=34.64 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.3
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.++|+||+|++.+|+.|.+.+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv 199 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVV 199 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHH
Confidence 46799999999999999998764
No 29
>KOG4434|consensus
Probab=49.13 E-value=18 Score=29.32 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=25.3
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHH-hhchhccCCCc
Q psy3814 14 NRDDKKESDEDDSEDPDKKKMQANL-EGAIVMEKPNV 49 (69)
Q Consensus 14 ~~~~~~~~~~~~~~~~e~k~l~~~I-~~eIv~~~p~V 49 (69)
.+|...++..++++++||.+|.+.| .++++..+..+
T Consensus 361 ~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~ 397 (520)
T KOG4434|consen 361 DSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKI 397 (520)
T ss_pred ccchhhccccccccHHHHHHHHHHHHHHHhhhccccc
Confidence 3444445556677889999999999 67777655544
No 30
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=44.71 E-value=9.9 Score=26.70 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.5
Q ss_pred ceeccChHHHHHHHHhc
Q psy3814 51 WTDVAGLEAAKKQKKKN 67 (69)
Q Consensus 51 W~DI~GLe~aK~~LkEa 67 (69)
-++++||+.+|+.|++.
T Consensus 5 l~~~~Gl~~vk~~i~~~ 21 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEI 21 (261)
T ss_pred HHHhcChHHHHHHHHHH
Confidence 36899999999999865
No 31
>CHL00181 cbbX CbbX; Provisional
Probab=39.36 E-value=13 Score=27.08 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=15.4
Q ss_pred ceeccChHHHHHHHHhcC
Q psy3814 51 WTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 51 W~DI~GLe~aK~~LkEaV 68 (69)
+.+++||+.+|+.|.|.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~ 39 (287)
T CHL00181 22 DEELVGLAPVKTRIREIA 39 (287)
T ss_pred HHhcCCcHHHHHHHHHHH
Confidence 568999999999998764
No 32
>KOG4009|consensus
Probab=36.83 E-value=27 Score=24.50 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=22.0
Q ss_pred HHHHHHHhhchhccCCCccceeccChHHHHHHHH
Q psy3814 32 KKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65 (69)
Q Consensus 32 k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~Lk 65 (69)
.++.++..... .+=.++|.|+||..+|++++.
T Consensus 102 ~k~veq~e~~~--~n~f~kygdLGgys~ar~aym 133 (156)
T KOG4009|consen 102 RKLVEQYEDAT--RNYFVKYGDLGGYSSARKAYM 133 (156)
T ss_pred HHHHHHHHHHH--HHHhhhhccccccchHHHHHH
Confidence 44444444332 334689999999999999875
No 33
>KOG0728|consensus
Probab=35.61 E-value=17 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=25.9
Q ss_pred HHHhhchhc-cCCCccceeccChHHHHHHHHhcCC
Q psy3814 36 ANLEGAIVM-EKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 36 ~~I~~eIv~-~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+.+-+..+. ..|.-+++-||||+...+.++|-|+
T Consensus 130 DpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIe 164 (404)
T KOG0728|consen 130 DPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIE 164 (404)
T ss_pred chhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHh
Confidence 344444444 4599999999999999999988764
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.83 E-value=17 Score=28.82 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=21.6
Q ss_pred hhccCCCccceeccChHHHHHHHHhcC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+...-.+..|+||.|.+.++..|+.++
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i 30 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAAL 30 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHH
Confidence 334456789999999999999998764
No 35
>KOG0733|consensus
Probab=34.68 E-value=21 Score=30.60 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.2
Q ss_pred cCCCccceeccChHHHHHHHHhcC
Q psy3814 45 EKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 45 ~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..++|.+.|||||+..-..|++.|
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li 206 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELI 206 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHH
Confidence 346899999999999988888754
No 36
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=30.14 E-value=25 Score=27.55 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.7
Q ss_pred CCCccceeccChHHHHHHH
Q psy3814 46 KPNVKWTDVAGLEAAKKQK 64 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~L 64 (69)
.++++++||.|.+.||+.-
T Consensus 115 ~~~it~ddViGqEeAK~kc 133 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKC 133 (368)
T ss_pred hccccHhhhhchHHHHHHH
Confidence 5789999999999999753
No 37
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=24.35 E-value=41 Score=24.00 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=19.7
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
-++..|+||.|.+.++..|+.++
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~ 30 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAI 30 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHH
Confidence 36688999999999999998764
No 38
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=23.70 E-value=53 Score=21.57 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCCChHHHHHHHHHhhchhccCCCccceeccChHHHHHHHHh
Q psy3814 25 DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKK 66 (69)
Q Consensus 25 ~~~~~e~k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkE 66 (69)
-.+++|++.++.-+.-.|..=..--.|-+=|.|+.||.+++.
T Consensus 46 ~~dspE~kdyrhGfd~li~~iD~a~klaqeGnl~eAKaaak~ 87 (100)
T COG3783 46 YPDSPEMKDYRHGFDILIGQIDKADKLAQEGNLDEAKAAAKT 87 (100)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 447889888777776666543445678888999999998875
No 39
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=22.10 E-value=25 Score=21.35 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=8.9
Q ss_pred CCccceeccChH
Q psy3814 47 PNVKWTDVAGLE 58 (69)
Q Consensus 47 p~V~W~DI~GLe 58 (69)
..=.|.||+||+
T Consensus 53 gDGpWqdikgld 64 (64)
T PF06820_consen 53 GDGPWQDIKGLD 64 (64)
T ss_pred ccCChhhccCCC
Confidence 344599999984
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=21.67 E-value=46 Score=24.02 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.6
Q ss_pred eccChHHHHHHHHhcC
Q psy3814 53 DVAGLEAAKKQKKKNH 68 (69)
Q Consensus 53 DI~GLe~aK~~LkEaV 68 (69)
+++||+.+|+.|.+.+
T Consensus 23 ~l~Gl~~vk~~i~e~~ 38 (284)
T TIGR02880 23 ELIGLKPVKTRIREIA 38 (284)
T ss_pred hccCHHHHHHHHHHHH
Confidence 5799999999998753
Done!