Query psy3814
Match_columns 69
No_of_seqs 117 out of 652
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:05:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 97.8 3.6E-06 1.2E-10 63.6 1.0 33 37-69 133-165 (405)
2 2qp9_X Vacuolar protein sortin 97.7 7.5E-06 2.6E-10 58.6 1.2 44 25-68 24-67 (355)
3 2zan_A Vacuolar protein sortin 97.6 1.9E-05 6.5E-10 58.2 1.6 42 27-68 109-150 (444)
4 4b4t_H 26S protease regulatory 97.5 3.2E-05 1.1E-09 59.5 1.9 27 43-69 200-226 (467)
5 4b4t_I 26S protease regulatory 97.4 2.8E-05 9.7E-10 59.4 0.9 28 42-69 172-199 (437)
6 4b4t_L 26S protease subunit RP 97.4 2.1E-05 7.3E-10 59.5 -0.2 32 38-69 167-198 (437)
7 4b4t_K 26S protease regulatory 97.3 7E-05 2.4E-09 56.4 1.4 26 43-68 163-188 (428)
8 4b4t_M 26S protease regulatory 97.2 0.00013 4.3E-09 55.2 2.0 27 42-68 171-197 (434)
9 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00011 3.9E-09 51.8 1.2 27 42-68 2-28 (322)
10 3cf0_A Transitional endoplasmi 96.8 0.00029 9.8E-09 48.9 1.0 30 39-68 2-31 (301)
11 3b9p_A CG5977-PA, isoform A; A 96.7 0.00077 2.6E-08 45.6 2.6 36 33-68 2-37 (297)
12 2x8a_A Nuclear valosin-contain 96.7 0.00037 1.3E-08 48.4 0.7 24 45-68 3-26 (274)
13 3eie_A Vacuolar protein sortin 96.5 0.00087 3E-08 46.7 1.8 29 40-68 6-34 (322)
14 3d8b_A Fidgetin-like protein 1 96.4 0.0023 7.8E-08 45.5 3.5 37 32-68 64-100 (357)
15 3cf2_A TER ATPase, transitiona 96.2 0.0015 5.1E-08 52.8 1.8 30 40-69 465-494 (806)
16 3hu3_A Transitional endoplasmi 95.1 0.005 1.7E-07 46.5 0.7 27 33-59 458-484 (489)
17 3vfd_A Spastin; ATPase, microt 94.1 0.011 3.8E-07 42.1 0.6 35 34-68 97-131 (389)
18 3cf2_A TER ATPase, transitiona 93.9 0.0084 2.9E-07 48.5 -0.5 24 45-68 197-220 (806)
19 2qz4_A Paraplegin; AAA+, SPG7, 93.0 0.032 1.1E-06 36.5 1.2 22 47-68 1-22 (262)
20 3h4m_A Proteasome-activating n 92.9 0.049 1.7E-06 36.3 2.0 26 43-68 8-33 (285)
21 1ixz_A ATP-dependent metallopr 92.5 0.049 1.7E-06 36.0 1.6 28 40-67 4-31 (254)
22 1lv7_A FTSH; alpha/beta domain 88.9 0.13 4.3E-06 34.0 1.0 24 45-68 5-28 (257)
23 1ypw_A Transitional endoplasmi 87.9 0.14 4.7E-06 40.7 0.8 29 40-68 465-493 (806)
24 1iy2_A ATP-dependent metallopr 87.5 0.22 7.4E-06 33.5 1.5 26 42-67 30-55 (278)
25 2r62_A Cell division protease 86.0 0.12 4.3E-06 34.1 -0.4 25 44-68 3-27 (268)
26 2dhr_A FTSH; AAA+ protein, hex 84.3 0.32 1.1E-05 37.0 1.2 27 42-68 21-47 (499)
27 2ce7_A Cell division protein F 83.6 0.42 1.5E-05 36.1 1.6 23 46-68 10-32 (476)
28 3hu3_A Transitional endoplasmi 72.0 1.8 6.1E-05 32.5 2.0 22 47-68 199-220 (489)
29 3cmw_A Protein RECA, recombina 70.7 0.81 2.8E-05 40.0 -0.2 23 46-68 1014-1036(1706)
30 1ypw_A Transitional endoplasmi 66.3 0.79 2.7E-05 36.3 -1.1 23 46-68 198-220 (806)
31 2c9o_A RUVB-like 1; hexameric 41.4 8 0.00027 28.0 0.8 23 46-68 31-53 (456)
32 3qwz_A Transitional endoplasmi 39.4 6.7 0.00023 26.9 0.2 12 45-56 200-211 (211)
33 2dof_A Transcription elongatio 28.5 62 0.0021 19.7 3.2 25 33-65 22-46 (85)
34 3syl_A Protein CBBX; photosynt 25.7 17 0.00058 24.0 0.3 18 51-68 30-47 (309)
35 2chq_A Replication factor C sm 23.0 59 0.002 21.1 2.6 23 46-68 11-33 (319)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=3.6e-06 Score=63.55 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=28.7
Q ss_pred HHhhchhccCCCccceeccChHHHHHHHHhcCC
Q psy3814 37 NLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 37 ~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
.+.+.++.+.|+|+|+|||||+.+|+.|+|+|+
T Consensus 133 ~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~ 165 (405)
T 4b4t_J 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIE 165 (405)
T ss_dssp CTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTH
T ss_pred hhhhccccCCCCCCHHHhCCHHHHHHHHHHHHH
Confidence 345666788999999999999999999999884
No 2
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.73 E-value=7.5e-06 Score=58.59 Aligned_cols=44 Identities=52% Similarity=0.780 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHhhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 25 DSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 25 ~~~~~e~k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+..+.+.+++...+.+.++...|+++|+||+|++.+|+.|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v 67 (355)
T 2qp9_X 24 DNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAV 67 (355)
T ss_dssp -----------------------CCCGGGSCCGGGHHHHHHHHT
T ss_pred ccccHHHHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHH
Confidence 33566778899999999999999999999999999999999876
No 3
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.58 E-value=1.9e-05 Score=58.23 Aligned_cols=42 Identities=62% Similarity=1.028 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHhhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 27 EDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 27 ~~~e~k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+..+.+.+.+.+.+.|+...|+++|+||+|++.+|+.|+++|
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v 150 (444)
T 2zan_A 109 DDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAV 150 (444)
T ss_dssp ---------------CBCCCCCCCGGGSCSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999999875
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=3.2e-05 Score=59.52 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=24.3
Q ss_pred hccCCCccceeccChHHHHHHHHhcCC
Q psy3814 43 VMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 43 v~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+.+.|+|+|+|||||+.+|+.|+|+|+
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~ 226 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVE 226 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTH
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHH
Confidence 347899999999999999999999873
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=2.8e-05 Score=59.42 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=24.8
Q ss_pred hhccCCCccceeccChHHHHHHHHhcCC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
.+.+.|+|+|+|||||+.+|+.|+|+|+
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~ 199 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVE 199 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHH
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHH
Confidence 3568899999999999999999999873
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=2.1e-05 Score=59.46 Aligned_cols=32 Identities=9% Similarity=0.243 Sum_probs=27.0
Q ss_pred HhhchhccCCCccceeccChHHHHHHHHhcCC
Q psy3814 38 LEGAIVMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 38 I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+....+.++|+|+|+||+||+.+|+.|+|+|+
T Consensus 167 ~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~ 198 (437)
T 4b4t_L 167 VYNMTSFEQGEITFDGIGGLTEQIRELREVIE 198 (437)
T ss_dssp CSSCEEEESCSSCSGGGCSCHHHHHHHHHHHH
T ss_pred hheeeeccCCCCChhHhCChHHHHHHHHHHHH
Confidence 34445668999999999999999999999873
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=7e-05 Score=56.45 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.8
Q ss_pred hccCCCccceeccChHHHHHHHHhcC
Q psy3814 43 VMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 43 v~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+.+.|+|+|+|||||+.+|+.|+|+|
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v 188 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAV 188 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHH
Confidence 45789999999999999999999976
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00013 Score=55.20 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=24.5
Q ss_pred hhccCCCccceeccChHHHHHHHHhcC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.+.|+|+|+|||||+.+|+.|+|+|
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v 197 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAI 197 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHT
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHH
Confidence 345789999999999999999999987
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.00011 Score=51.83 Aligned_cols=27 Identities=63% Similarity=1.008 Sum_probs=24.7
Q ss_pred hhccCCCccceeccChHHHHHHHHhcC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
|+.+.|+++|+||+||+.+|+.|+++|
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v 28 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAV 28 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHH
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHH
Confidence 567889999999999999999999875
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.82 E-value=0.00029 Score=48.87 Aligned_cols=30 Identities=33% Similarity=0.599 Sum_probs=27.1
Q ss_pred hhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 39 EGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 39 ~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.++++.+.|+++|+||+|++.+|+.|+++|
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v 31 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELV 31 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHH
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHH
Confidence 467888999999999999999999999875
No 11
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.73 E-value=0.00077 Score=45.57 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=33.0
Q ss_pred HHHHHHhhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 33 KMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 33 ~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+|+..+.++++...|+++|+||+|++.+|+.|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i 37 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMV 37 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHT
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHH
Confidence 478889999999999999999999999999999875
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.68 E-value=0.00037 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=13.9
Q ss_pred cCCCccceeccChHHHHHHHHhcC
Q psy3814 45 EKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 45 ~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..|+|+|+||+||+.+|+.|+++|
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i 26 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAI 26 (274)
T ss_dssp ---------CCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHH
Confidence 468999999999999999999865
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.53 E-value=0.00087 Score=46.73 Aligned_cols=29 Identities=62% Similarity=0.878 Sum_probs=26.5
Q ss_pred hchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 40 GAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 40 ~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..++.+.|+++|+||+|++.+|+.|+++|
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i 34 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAV 34 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHT
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHH
Confidence 56778999999999999999999999876
No 14
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.43 E-value=0.0023 Score=45.48 Aligned_cols=37 Identities=35% Similarity=0.476 Sum_probs=33.6
Q ss_pred HHHHHHHhhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 32 KKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 32 k~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..+.+.|.++++...|+++|+||+|++.+|+.|+++|
T Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i 100 (357)
T 3d8b_A 64 PKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIV 100 (357)
T ss_dssp HHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHT
T ss_pred hHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHH
Confidence 4678889999999999999999999999999999876
No 15
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.24 E-value=0.0015 Score=52.84 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=26.4
Q ss_pred hchhccCCCccceeccChHHHHHHHHhcCC
Q psy3814 40 GAIVMEKPNVKWTDVAGLEAAKKQKKKNHP 69 (69)
Q Consensus 40 ~eIv~~~p~V~W~DI~GLe~aK~~LkEaVe 69 (69)
+++..+.|+|+|+||+||+.+|+.|+++|.
T Consensus 465 r~~~~~~p~v~w~diggl~~~k~~l~e~v~ 494 (806)
T 3cf2_A 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQ 494 (806)
T ss_dssp CCCCCBCCCCCSTTCCSCHHHHHHHTTTTT
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHH
Confidence 455667899999999999999999999874
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.11 E-value=0.005 Score=46.49 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=8.9
Q ss_pred HHHHHHhhchhccCCCccceeccChHH
Q psy3814 33 KMQANLEGAIVMEKPNVKWTDVAGLEA 59 (69)
Q Consensus 33 ~l~~~I~~eIv~~~p~V~W~DI~GLe~ 59 (69)
.+.....++++.+.|+|+|+||||..+
T Consensus 458 ~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 458 QSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp SHHHHHHHGGGC---------------
T ss_pred hCCchhhhcccccCCCCCHHHcCCCcc
Confidence 456667788999999999999999754
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.14 E-value=0.011 Score=42.08 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=29.6
Q ss_pred HHHHHhhchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 34 MQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 34 l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+.+.+.+.++...+.++|+||+|++.+++.|.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~ 131 (389)
T 3vfd_A 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIV 131 (389)
T ss_dssp CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHT
T ss_pred HHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHH
Confidence 44556677788889999999999999999999875
No 18
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.90 E-value=0.0084 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.9
Q ss_pred cCCCccceeccChHHHHHHHHhcC
Q psy3814 45 EKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 45 ~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..|.|+|+||+||+.+|+.|+|+|
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v 220 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMV 220 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHH
T ss_pred cCCCCChhhhcCHHHHHHHHHHHH
Confidence 358999999999999999999976
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.03 E-value=0.032 Score=36.48 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.6
Q ss_pred CCccceeccChHHHHHHHHhcC
Q psy3814 47 PNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 47 p~V~W~DI~GLe~aK~~LkEaV 68 (69)
|+++|+||+|++.+|+.|++.+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~ 22 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFV 22 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH
Confidence 7899999999999999998653
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.85 E-value=0.049 Score=36.27 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=22.9
Q ss_pred hccCCCccceeccChHHHHHHHHhcC
Q psy3814 43 VMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 43 v~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+...|+++|+||+|++.+|+.|.+.+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~ 33 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVV 33 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHT
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHH
Confidence 35679999999999999999998765
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.51 E-value=0.049 Score=36.01 Aligned_cols=28 Identities=43% Similarity=0.694 Sum_probs=21.7
Q ss_pred hchhccCCCccceeccChHHHHHHHHhc
Q psy3814 40 GAIVMEKPNVKWTDVAGLEAAKKQKKKN 67 (69)
Q Consensus 40 ~eIv~~~p~V~W~DI~GLe~aK~~LkEa 67 (69)
..++...|.++|+||+|++.+|..|++.
T Consensus 4 ~~~~~~~~~~~~~~i~g~~~~~~~l~~l 31 (254)
T 1ixz_A 4 GSVLTEAPKVTFKDVAGAEEAKEELKEI 31 (254)
T ss_dssp ----CCCCSCCGGGCCSCHHHHHHHHHH
T ss_pred cccccCCCCCCHHHhCCcHHHHHHHHHH
Confidence 3456788999999999999999988764
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.91 E-value=0.13 Score=34.03 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.8
Q ss_pred cCCCccceeccChHHHHHHHHhcC
Q psy3814 45 EKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 45 ~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..|.++|+||+|++.+|+.|.+.+
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~ 28 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELV 28 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHH
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHH
Confidence 568899999999999999988653
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.86 E-value=0.14 Score=40.66 Aligned_cols=29 Identities=34% Similarity=0.652 Sum_probs=24.9
Q ss_pred hchhccCCCccceeccChHHHHHHHHhcC
Q psy3814 40 GAIVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 40 ~eIv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
++.+...|+++|+||+||+.+|+.|.+++
T Consensus 465 ~~~~~~~~~v~~~di~gl~~vk~~l~~~v 493 (806)
T 1ypw_A 465 RETVVEVPQVTWEDIGGLEDVKRELQELV 493 (806)
T ss_dssp CCCCCCCCCCSSCSSSCCCCHHHHHHTTT
T ss_pred hhhcccCccccccccccchhhhhhHHHHH
Confidence 34456779999999999999999999876
No 24
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.50 E-value=0.22 Score=33.51 Aligned_cols=26 Identities=42% Similarity=0.649 Sum_probs=22.3
Q ss_pred hhccCCCccceeccChHHHHHHHHhc
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKN 67 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEa 67 (69)
++...|.++|+||+|++.+|..|+..
T Consensus 30 ~~~~~~~~~~~~i~g~~~~~~~l~~l 55 (278)
T 1iy2_A 30 VLTEAPKVTFKDVAGAEEAKEELKEI 55 (278)
T ss_dssp CBCCCCCCCGGGSSSCHHHHHHHHHH
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHH
Confidence 45667999999999999999988764
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.96 E-value=0.12 Score=34.08 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=21.6
Q ss_pred ccCCCccceeccChHHHHHHHHhcC
Q psy3814 44 MEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 44 ~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.|.+.|+||+|++.+++.|++.+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~ 27 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIV 27 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHH
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHH
Confidence 3578999999999999999998754
No 26
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=84.32 E-value=0.32 Score=36.97 Aligned_cols=27 Identities=41% Similarity=0.601 Sum_probs=22.5
Q ss_pred hhccCCCccceeccChHHHHHHHHhcC
Q psy3814 42 IVMEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 42 Iv~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
++.+.|.++|+||+|++.+|..|++.+
T Consensus 21 ~~~~~~~~~f~dv~G~~~~k~~l~~lv 47 (499)
T 2dhr_A 21 VLTEAPKVTFKDVAGAEEAKEELKEIV 47 (499)
T ss_dssp EECSCCCCCTTSSCSCHHHHHHHHHHH
T ss_pred eeccCCCCCHHHcCCcHHHHHHHHHHH
Confidence 344559999999999999999998754
No 27
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=83.64 E-value=0.42 Score=36.12 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.7
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.|.++|+||+|++.+|+.|++.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v 32 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVV 32 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHH
Confidence 58899999999999999998754
No 28
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=71.97 E-value=1.8 Score=32.51 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.0
Q ss_pred CCccceeccChHHHHHHHHhcC
Q psy3814 47 PNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 47 p~V~W~DI~GLe~aK~~LkEaV 68 (69)
+.++|+||+|++.+++.|++.|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i 220 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMV 220 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHT
T ss_pred CCCCHHHcCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 29
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.74 E-value=0.81 Score=39.99 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=12.0
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.++|.||+||+.+|+.+.|+|
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~ 1036 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAA 1036 (1706)
T ss_dssp ----------CTTHHHHHHHHHH
T ss_pred cCCceeeecCCccHHHHHHHHHH
Confidence 36699999999999999999876
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=66.25 E-value=0.79 Score=36.34 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.5
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.|+|+||+|++.+++.|++.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i 220 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMV 220 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHHHH
Confidence 46799999999999999998865
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=41.38 E-value=8 Score=28.04 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=19.1
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.|...|++|+|++.+|+.|.+.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~ 53 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIV 53 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHH
T ss_pred ChhhchhhccCHHHHHHHHHHHH
Confidence 47788999999999999877643
No 32
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=39.44 E-value=6.7 Score=26.92 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=1.7
Q ss_pred cCCCccceeccC
Q psy3814 45 EKPNVKWTDVAG 56 (69)
Q Consensus 45 ~~p~V~W~DI~G 56 (69)
..|.|+|+||||
T Consensus 200 ~~~~VtYeDIGG 211 (211)
T 3qwz_A 200 SLNEVGYDDIGG 211 (211)
T ss_dssp CCC---------
T ss_pred cCCCcceeCCCC
Confidence 358899999998
No 33
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.50 E-value=62 Score=19.67 Aligned_cols=25 Identities=16% Similarity=0.498 Sum_probs=17.6
Q ss_pred HHHHHHhhchhccCCCccceeccChHHHHHHHH
Q psy3814 33 KMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKK 65 (69)
Q Consensus 33 ~l~~~I~~eIv~~~p~V~W~DI~GLe~aK~~Lk 65 (69)
.+.+.|...| ..|.++| ..||..|+
T Consensus 22 ~F~aLL~DlI--r~pd~sW------~Eakr~Lr 46 (85)
T 2dof_A 22 NFKALLSDMV--RSSDVSW------SDTRRTLR 46 (85)
T ss_dssp HHHHHHHHHT--CCSSCCH------HHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCCH------HHHHHHhc
Confidence 4555555554 7899999 67787775
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=25.67 E-value=17 Score=23.96 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.2
Q ss_pred ceeccChHHHHHHHHhcC
Q psy3814 51 WTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 51 W~DI~GLe~aK~~LkEaV 68 (69)
|.+|.|++.+|+.|.+.+
T Consensus 30 ~~~i~G~~~~~~~l~~~~ 47 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETA 47 (309)
T ss_dssp HHHSSSCHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHH
Confidence 568999999999998653
No 35
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=23.00 E-value=59 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=19.4
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..+..|++|.|.+.+++.|...+
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l 33 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYV 33 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHH
Confidence 45678999999999999998765
Done!