Query psy3814
Match_columns 69
No_of_seqs 117 out of 652
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 18:05:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ixza_ c.37.1.20 (A:) AAA dom 97.4 2.1E-05 1.5E-09 52.9 1.6 25 44-68 1-25 (247)
2 d1lv7a_ c.37.1.20 (A:) AAA dom 96.9 0.00011 7.9E-09 49.7 0.7 24 45-68 5-28 (256)
3 d1r7ra3 c.37.1.20 (A:471-735) 95.9 0.00027 1.9E-08 47.4 -1.8 23 46-68 1-23 (265)
4 d1ixsb2 c.37.1.20 (B:4-242) Ho 81.6 0.26 1.9E-05 30.5 1.4 21 48-68 5-25 (239)
5 d1in4a2 c.37.1.20 (A:17-254) H 76.8 0.45 3.3E-05 29.3 1.4 20 49-68 6-25 (238)
6 d1iqpa2 c.37.1.20 (A:2-232) Re 38.8 5.4 0.00039 24.0 1.2 22 47-68 19-40 (231)
7 d1g8pa_ c.37.1.20 (A:) ATPase 37.2 8.7 0.00064 24.6 2.1 19 47-65 2-20 (333)
8 d1sxje2 c.37.1.20 (E:4-255) Re 31.8 16 0.0012 21.6 2.6 22 47-68 6-27 (252)
9 d1sxja2 c.37.1.20 (A:295-547) 28.3 10 0.00076 22.6 1.3 21 47-67 9-29 (253)
10 d1njfa_ c.37.1.20 (A:) delta p 23.5 15 0.0011 22.4 1.4 21 48-68 8-28 (239)
No 1
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=97.41 E-value=2.1e-05 Score=52.92 Aligned_cols=25 Identities=44% Similarity=0.583 Sum_probs=22.4
Q ss_pred ccCCCccceeccChHHHHHHHHhcC
Q psy3814 44 MEKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 44 ~~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.|+|+|+||+||+.+|+.|++.|
T Consensus 1 ~~~p~~~~~di~G~~~~k~~l~~~i 25 (247)
T d1ixza_ 1 TEAPKVTFKDVAGAEEAKEELKEIV 25 (247)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHH
T ss_pred CCCCCCcHHHHccHHHHHHHHHHHH
Confidence 3679999999999999999998864
No 2
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=96.85 E-value=0.00011 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.7
Q ss_pred cCCCccceeccChHHHHHHHHhcC
Q psy3814 45 EKPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 45 ~~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
..|.|+|+||+||+.+|+.|+|.|
T Consensus 5 ~~~~~t~~Di~Gl~~~k~~l~e~v 28 (256)
T d1lv7a_ 5 DQIKTTFADVAGCDEAKEEVAELV 28 (256)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHH
T ss_pred CCCCCCHHHHhchHHHHHHHHHHH
Confidence 568999999999999999998865
No 3
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.91 E-value=0.00027 Score=47.41 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=21.1
Q ss_pred CCCccceeccChHHHHHHHHhcC
Q psy3814 46 KPNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 46 ~p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.|+++|+||+|++.+|+.|.+.|
T Consensus 1 ~p~~~f~di~G~~~~k~~l~~~i 23 (265)
T d1r7ra3 1 VPQVTWEDIGGLEDVKRELQELV 23 (265)
T ss_dssp CCCCSCSSCSSSSCCCCHHHHHT
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH
Confidence 38999999999999999999876
No 4
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=81.60 E-value=0.26 Score=30.52 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=18.2
Q ss_pred CccceeccChHHHHHHHHhcC
Q psy3814 48 NVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 48 ~V~W~DI~GLe~aK~~LkEaV 68 (69)
+.+|+||.|.+++|+.|+..|
T Consensus 5 P~~~ddivGq~~~~~~L~~~i 25 (239)
T d1ixsb2 5 PKTLDEYIGQERLKQKLRVYL 25 (239)
T ss_dssp CCSGGGSCSCHHHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH
Confidence 458999999999999998764
No 5
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=76.76 E-value=0.45 Score=29.28 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=17.7
Q ss_pred ccceeccChHHHHHHHHhcC
Q psy3814 49 VKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 49 V~W~DI~GLe~aK~~LkEaV 68 (69)
-+|+||.|.+.+|+.|++++
T Consensus 6 ~~~~divGqe~~~~~l~~~i 25 (238)
T d1in4a2 6 KSLDEFIGQENVKKKLSLAL 25 (238)
T ss_dssp SSGGGCCSCHHHHHHHHHHH
T ss_pred CcHHHcCChHHHHHHHHHHH
Confidence 47999999999999998764
No 6
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=38.80 E-value=5.4 Score=23.98 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=18.3
Q ss_pred CCccceeccChHHHHHHHHhcC
Q psy3814 47 PNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 47 p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+-+|+||.|.+.+++.|+.++
T Consensus 19 ~P~~~~diig~~~~~~~l~~~i 40 (231)
T d1iqpa2 19 RPQRLDDIVGQEHIVKRLKHYV 40 (231)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHH
T ss_pred CCCCHHHccCcHHHHHHHHHHH
Confidence 3448999999999999998764
No 7
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=37.20 E-value=8.7 Score=24.64 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.2
Q ss_pred CCccceeccChHHHHHHHH
Q psy3814 47 PNVKWTDVAGLEAAKKQKK 65 (69)
Q Consensus 47 p~V~W~DI~GLe~aK~~Lk 65 (69)
|...|.||.|.+.+|++|.
T Consensus 2 ~~~~f~~I~Gq~~~kral~ 20 (333)
T d1g8pa_ 2 PVFPFSAIVGQEDMKLALL 20 (333)
T ss_dssp CCCCGGGSCSCHHHHHHHH
T ss_pred CCCChhhccCcHHHHHHHH
Confidence 5567999999999999775
No 8
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.77 E-value=16 Score=21.65 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=18.7
Q ss_pred CCccceeccChHHHHHHHHhcC
Q psy3814 47 PNVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 47 p~V~W~DI~GLe~aK~~LkEaV 68 (69)
.+.+++||.|.+.+++.|+..+
T Consensus 6 ~P~~~~diig~~~~~~~L~~~~ 27 (252)
T d1sxje2 6 RPKSLNALSHNEELTNFLKSLS 27 (252)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTT
T ss_pred CCCCHHHccCcHHHHHHHHHHH
Confidence 4568999999999999998764
No 9
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.26 E-value=10 Score=22.65 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.7
Q ss_pred CCccceeccChHHHHHHHHhc
Q psy3814 47 PNVKWTDVAGLEAAKKQKKKN 67 (69)
Q Consensus 47 p~V~W~DI~GLe~aK~~LkEa 67 (69)
.+-+|+||+|.+.+++.|++.
T Consensus 9 ~P~~~~dlig~~~~~~~L~~~ 29 (253)
T d1sxja2 9 APTNLQQVCGNKGSVMKLKNW 29 (253)
T ss_dssp CCSSGGGCCSCHHHHHHHHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHH
Confidence 345899999999999998864
No 10
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=23.53 E-value=15 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.8
Q ss_pred CccceeccChHHHHHHHHhcC
Q psy3814 48 NVKWTDVAGLEAAKKQKKKNH 68 (69)
Q Consensus 48 ~V~W~DI~GLe~aK~~LkEaV 68 (69)
+-+++||.|.+.+++.|+..+
T Consensus 8 P~~~~dlig~~~~~~~L~~~i 28 (239)
T d1njfa_ 8 PQTFADVVGQEHVLTALANGL 28 (239)
T ss_dssp CSSGGGSCSCHHHHHHHHHHH
T ss_pred CCCHHHccChHHHHHHHHHHH
Confidence 358999999999999988653
Done!