RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3814
         (69 letters)



>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily.  This
           subfamily of the AAA family ATPases includes two members
           each from three archaeal species. It also includes yeast
           CDC48 (cell division control protein 48) and the human
           ortholog, transitional endoplasmic reticulum ATPase
           (valosin-containing protein). These proteins in
           eukaryotes are involved in the budding and transfer of
           membrane from the transitional endoplasmic reticulum to
           the Golgi apparatus.
          Length = 733

 Score = 29.5 bits (66), Expect = 0.083
 Identities = 10/22 (45%), Positives = 18/22 (81%)

Query: 42  IVMEKPNVKWTDVAGLEAAKKQ 63
           +++E PNV+W+D+ GLE  K++
Sbjct: 443 VLVEVPNVRWSDIGGLEEVKQE 464


>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
          Length = 852

 Score = 26.2 bits (58), Expect = 1.3
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 12 FQNRDDKKESDEDDSEDPDKKKMQANLEGA--------IVMEKPNVKWTDVAGLEAAKKQ 63
            + DD ++    D +D D+      LE          ++   P V   DV  +E     
Sbjct: 31 DGSEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMRRRLIRTPPRVDSFDVEAMEIPGAH 90

Query: 64 K 64
          +
Sbjct: 91 R 91


>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
          HflB(FtsH) is a pleiotropic protein required for
          correct cell division in bacteria. It has ATP-dependent
          zinc metalloprotease activity. It was formerly
          designated cell division protein FtsH [Cellular
          processes, Cell division, Protein fate, Degradation of
          proteins, peptides, and glycopeptides].
          Length = 495

 Score = 25.7 bits (57), Expect = 2.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 45 EKPNVKWTDVAGLEAAK 61
          EKP V + DVAG++ AK
Sbjct: 48 EKPKVTFKDVAGIDEAK 64


>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
           Provisional.
          Length = 389

 Score = 25.6 bits (57), Expect = 2.3
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 7/35 (20%)

Query: 24  DDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLE 58
              +DP  + M+       V+E PNV + D+ GLE
Sbjct: 110 PSEKDPRVQAME-------VIESPNVTYEDIGGLE 137


>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
           modification, protein turnover, chaperones].
          Length = 494

 Score = 25.2 bits (55), Expect = 2.6
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 17  DKKESDEDDSEDPDKKKMQANLEGA--IVMEKPNVKWTDVAGLEAAKKQ 63
           D        +ED D ++    +  +  ++ E  +V   D+ GLE AK++
Sbjct: 206 DLVGEYIGVTED-DFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEE 253


>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
           protein; Provisional.
          Length = 398

 Score = 25.1 bits (55), Expect = 3.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)

Query: 45  EKPNVKWTDVAGLEAAKKQKKK 66
           EKP+V ++D+ GL+  K++ ++
Sbjct: 138 EKPDVTYSDIGGLDIQKQEIRE 159


>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family.  Many
           proteins may score above the trusted cutoff because an
           internal.
          Length = 364

 Score = 24.8 bits (54), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 7/33 (21%)

Query: 26  SEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLE 58
           S+DP  K M+       V E+PNV + D+ GLE
Sbjct: 103 SKDPLVKGME-------VEERPNVSYEDIGGLE 128


>gnl|CDD|131711 TIGR02663, nifX, nitrogen fixation protein NifX.  Members of this
          family are NifX proteins encoded within operons for
          nitrogen fixation in a number of bacteria. NifX, NafY,
          and the C-terminal region of NifB all belong to the
          Pfam family pfam02579 and are involved in MoFe cofactor
          biosynthesis. NifX is a nitrogenase accessory protein
          with a role in expression of the MoFe cofactor
          [Biosynthesis of cofactors, prosthetic groups, and
          carriers, Other, Central intermediary metabolism,
          Nitrogen fixation].
          Length = 119

 Score = 23.5 bits (51), Expect = 9.5
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 19 KESDEDDSEDPDKKKMQANLEGAIVMEKPNVKWTDVAGLEAAKKQKKKNHP 69
            SDED  ED    K++A  + AI+          + G  AAK    K HP
Sbjct: 43 GASDEDGEEDKIAPKIEALKDCAILYC------LAIGGPAAAKVVAAKIHP 87


>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
           Superfamily; Provisional.
          Length = 844

 Score = 23.7 bits (51), Expect = 9.9
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 16  DDKKESDEDDSEDPDKKKMQANLEGAI 42
           D   + D+ D E  ++ K  +N   A 
Sbjct: 210 DSDGQGDDGDPESAEEDKAASNTRAAY 236


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.302    0.122    0.331 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,272,953
Number of extensions: 234414
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 31
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 53 (24.2 bits)