RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3814
         (69 letters)



>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 45 EKPNVKWTDVAGLEAAKKQ 63
          E P V + DVAG E AK++
Sbjct: 2  EAPKVTFKDVAGAEEAKEE 20


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 31.3 bits (70), Expect = 0.004
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 47 PNVKWTDVAGLEAAKKQ 63
          P V W D+ GLE  K++
Sbjct: 2  PQVTWEDIGGLEDVKRE 18


>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 30.2 bits (68), Expect = 0.012
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 42 IVMEKPNVKWTDVAGLEAAKKQ 63
          +  ++    + DVAG + AK++
Sbjct: 2  LTEDQIKTTFADVAGCDEAKEE 23


>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 27.3 bits (59), Expect = 0.11
 Identities = 5/15 (33%), Positives = 6/15 (40%)

Query: 49 VKWTDVAGLEAAKKQ 63
          V + DV G      Q
Sbjct: 1  VGYDDVGGCRKQLAQ 15


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.302    0.122    0.331 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 224,924
Number of extensions: 7723
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 5
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.5 bits)