Query psy3819
Match_columns 122
No_of_seqs 35 out of 37
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 18:11:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j0g_A Hypothetical protein 18 100.0 1.5E-33 5.2E-38 201.2 3.1 47 75-121 45-91 (92)
2 3ehg_A Sensor kinase (YOCF pro 50.6 6.5 0.00022 24.4 1.4 35 83-117 72-115 (128)
3 3ehh_A Sensor kinase (YOCF pro 42.9 7.6 0.00026 25.5 0.8 34 84-117 163-205 (218)
4 3zxq_A Hypoxia sensor histidin 38.0 15 0.00051 22.1 1.6 35 83-117 70-110 (124)
5 1id0_A PHOQ histidine kinase; 37.5 13 0.00045 22.9 1.3 15 84-98 76-90 (152)
6 3zxo_A Redox sensor histidine 35.0 15 0.00052 22.1 1.3 36 83-118 74-115 (129)
7 3jz3_A Sensor protein QSEC; he 32.9 14 0.00048 23.8 0.9 14 85-98 148-161 (222)
8 2c2a_A Sensor histidine kinase 29.3 19 0.00066 24.3 1.1 14 85-98 176-189 (258)
9 1ysr_A Sensor-type histidine k 28.2 22 0.00074 22.0 1.2 16 83-98 78-93 (150)
10 2cs7_A Pneumococcal histidine 27.5 60 0.002 20.8 3.2 33 87-119 5-41 (55)
11 3a0y_A Sensor protein; ATP-LID 27.3 19 0.00065 21.9 0.8 15 84-98 81-95 (152)
12 1r62_A Nitrogen regulation pro 27.1 17 0.00058 22.3 0.5 14 85-98 94-107 (160)
13 2wer_A ATP-dependent molecular 25.6 18 0.00063 25.9 0.5 16 84-99 74-89 (220)
14 1i58_A Chemotaxis protein CHEA 25.6 16 0.00055 23.7 0.2 16 83-98 92-107 (189)
15 3sl2_A Sensor histidine kinase 23.2 35 0.0012 21.8 1.5 15 84-98 79-93 (177)
16 1ndd_A NEDD8, protein (ubiquit 22.6 1E+02 0.0035 17.1 3.3 30 91-120 47-76 (76)
17 2gqp_A Endoplasmin; GRP94, HSP 21.6 25 0.00084 26.0 0.5 16 83-98 79-94 (236)
18 3a0r_A Sensor protein; four he 21.5 28 0.00095 24.1 0.8 15 84-98 278-292 (349)
19 1h7s_A PMS1 protein homolog 2; 21.4 36 0.0012 26.8 1.5 26 83-109 64-89 (365)
20 2ior_A Chaperone protein HTPG; 21.2 25 0.00087 25.8 0.5 17 83-99 94-110 (235)
21 1b63_A MUTL; DNA mismatch repa 21.0 38 0.0013 26.0 1.5 26 83-109 54-79 (333)
22 1bxd_A ENVZ(290-450), protein 20.4 32 0.0011 21.5 0.8 15 84-98 79-93 (161)
23 3ven_A O-carbamoyltransferase 20.1 78 0.0027 27.2 3.4 37 77-116 129-166 (576)
No 1
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=99.97 E-value=1.5e-33 Score=201.17 Aligned_cols=47 Identities=72% Similarity=1.081 Sum_probs=45.5
Q ss_pred ccccCCCcceeEEccCCcccCccCcccceeeecCceeeeeecCCCCC
Q psy3819 75 GLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121 (122)
Q Consensus 75 gqfkV~~aTSAIITndGiGINP~QTAG~vflKhGseLrlIPRDRVG~ 121 (122)
.+|+|||+|||||||||+||||+|||||||||||||||||||||||.
T Consensus 45 EeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 45 EEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp HHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred HHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 36999999999999999999999999999999999999999999996
No 2
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=50.61 E-value=6.5 Score=24.38 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=23.3
Q ss_pred ceeEEccCCcccCccCcccc---------eeeecCceeeeeecC
Q psy3819 83 TSAIITDDGIGINPQQTAGT---------VFMKHGCELRLIPRD 117 (122)
Q Consensus 83 TSAIITndGiGINP~QTAG~---------vflKhGseLrlIPRD 117 (122)
....|+|+|.||+|.+..|. +--.||.++.+-.+.
T Consensus 72 ~~i~V~D~G~Gi~~~~~~g~GlGL~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 72 VVITVSDDGTFKGEENSFSKGHGLLGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp EEEEEEESSCCCSCSSCCCTTSHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEEEECCcCcCcccCCCCCccHHHHHHHHHHcCCEEEEEeCC
Confidence 34678999999999864221 223577777776554
No 3
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=42.87 E-value=7.6 Score=25.45 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=19.7
Q ss_pred eeEEccCCcccCccCcccc---------eeeecCceeeeeecC
Q psy3819 84 SAIITDDGIGINPQQTAGT---------VFMKHGCELRLIPRD 117 (122)
Q Consensus 84 SAIITndGiGINP~QTAG~---------vflKhGseLrlIPRD 117 (122)
...|+|+|.||+|.+..|. +--+||..+.+-..+
T Consensus 163 ~i~V~D~G~Gi~~~~~~g~GlGL~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 163 VITVSDDGTFKGEENSFSKGHGLLGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp EEEEEESSCCCC--------CHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEEECCcCCCCCCCCCCCCCHHHHHHHHHHcCCEEEEeCCC
Confidence 4678999999999864331 223577777776655
No 4
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=38.01 E-value=15 Score=22.10 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=22.9
Q ss_pred ceeEEccCCcccCccCcc-c-----ceeeecCceeeeeecC
Q psy3819 83 TSAIITDDGIGINPQQTA-G-----TVFMKHGCELRLIPRD 117 (122)
Q Consensus 83 TSAIITndGiGINP~QTA-G-----~vflKhGseLrlIPRD 117 (122)
....|+|+|.||.+.++. | .+--+||.++++-.++
T Consensus 70 ~~i~v~D~G~gi~~~~~GlGL~~~~~~~~~~gG~i~~~~~~ 110 (124)
T 3zxq_A 70 VRVEVVDDGVGISGDITESGLRNLRQRADDAGGEFTVENMP 110 (124)
T ss_dssp EEEEEEECCCSSCGGGSHHHHHHHHHHHHHHTCEEEEEECT
T ss_pred EEEEEEECCCCCCccccccCHHHHHHHHHHhCCEEEEEEcC
Confidence 356789999999998741 1 1223567777766554
No 5
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=37.47 E-value=13 Score=22.85 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.5
Q ss_pred eeEEccCCcccCccC
Q psy3819 84 SAIITDDGIGINPQQ 98 (122)
Q Consensus 84 SAIITndGiGINP~Q 98 (122)
...|+|+|.||++.+
T Consensus 76 ~i~i~D~G~gi~~~~ 90 (152)
T 1id0_A 76 YIVVEDDGPGIPLSK 90 (152)
T ss_dssp EEEEEESSSCCCGGG
T ss_pred EEEEEeCCCCcCHHH
Confidence 467899999999876
No 6
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=35.04 E-value=15 Score=22.10 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=23.8
Q ss_pred ceeEEccCCcccCccCcc-c-----ceeeecCceeeeeecCC
Q psy3819 83 TSAIITDDGIGINPQQTA-G-----TVFMKHGCELRLIPRDR 118 (122)
Q Consensus 83 TSAIITndGiGINP~QTA-G-----~vflKhGseLrlIPRDR 118 (122)
....|+|+|.||.+.++. | .+--+||.++++-.++-
T Consensus 74 ~~i~v~D~G~gi~~~~~GlGL~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 74 LCIEVTDNGRGMPDEFTGSGLTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp EEEEEEECCCCCTTTTCSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred EEEEEecCCCCCCcccCCcCHHHHHHHHHHcCCEEEEeeCCC
Confidence 446789999999998732 1 12235777777766543
No 7
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=32.91 E-value=14 Score=23.83 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=7.0
Q ss_pred eEEccCCcccCccC
Q psy3819 85 AIITDDGIGINPQQ 98 (122)
Q Consensus 85 AIITndGiGINP~Q 98 (122)
..|+++|.||++.+
T Consensus 148 i~V~D~G~Gi~~~~ 161 (222)
T 3jz3_A 148 FIVRDNGPGVTPEA 161 (222)
T ss_dssp EEEECSCC------
T ss_pred EEEEECCCCCCHHH
Confidence 66899999999874
No 8
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=29.31 E-value=19 Score=24.32 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=11.9
Q ss_pred eEEccCCcccCccC
Q psy3819 85 AIITDDGIGINPQQ 98 (122)
Q Consensus 85 AIITndGiGINP~Q 98 (122)
..|+++|.||++.+
T Consensus 176 i~V~D~G~Gi~~~~ 189 (258)
T 2c2a_A 176 IIVEDNGIGIPDHA 189 (258)
T ss_dssp EEEEECSSCCCGGG
T ss_pred EEEEecCCCCCHHH
Confidence 56899999999874
No 9
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=28.22 E-value=22 Score=21.98 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=12.8
Q ss_pred ceeEEccCCcccCccC
Q psy3819 83 TSAIITDDGIGINPQQ 98 (122)
Q Consensus 83 TSAIITndGiGINP~Q 98 (122)
....|+|+|.||++.+
T Consensus 78 ~~i~v~D~G~gi~~~~ 93 (150)
T 1ysr_A 78 VEIAIDDNGSGVPEGE 93 (150)
T ss_dssp EEEEEEESSSCCCGGG
T ss_pred EEEEEEECCCCCCHHH
Confidence 3467899999998874
No 10
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=27.50 E-value=60 Score=20.81 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=27.4
Q ss_pred EccCCcccCccC----cccceeeecCceeeeeecCCC
Q psy3819 87 ITDDGIGINPQQ----TAGTVFMKHGCELRLIPRDRV 119 (122)
Q Consensus 87 ITndGiGINP~Q----TAG~vflKhGseLrlIPRDRV 119 (122)
.|+||...||++ |+--+-+.||.-.-.||++-.
T Consensus 5 ~~~DgyvF~p~dIvs~~~~gyvv~HGdH~HyIpk~~L 41 (55)
T 2cs7_A 5 TTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNEL 41 (55)
T ss_dssp BCTTSCBCCGGGCCEECSSEEEEEETTEEEEEEGGGS
T ss_pred ecCCCcEECHHHheecCCCeEEEecCCeEEEeEhHHC
Confidence 589999999987 455577899999999998754
No 11
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=27.31 E-value=19 Score=21.91 Aligned_cols=15 Identities=13% Similarity=0.125 Sum_probs=12.5
Q ss_pred eeEEccCCcccCccC
Q psy3819 84 SAIITDDGIGINPQQ 98 (122)
Q Consensus 84 SAIITndGiGINP~Q 98 (122)
...|+|+|.||.+.+
T Consensus 81 ~i~i~D~G~g~~~~~ 95 (152)
T 3a0y_A 81 RVSVWNSGPPIPEEL 95 (152)
T ss_dssp EEEEEEESCCCCGGG
T ss_pred EEEEEeCCCCcCHHH
Confidence 366899999999874
No 12
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=27.09 E-value=17 Score=22.26 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=8.9
Q ss_pred eEEccCCcccCccC
Q psy3819 85 AIITDDGIGINPQQ 98 (122)
Q Consensus 85 AIITndGiGINP~Q 98 (122)
..|+|+|.||++.+
T Consensus 94 i~v~D~G~gi~~~~ 107 (160)
T 1r62_A 94 IDVEDNGPGIPPHL 107 (160)
T ss_dssp EEEEEECTTC----
T ss_pred EEEEeCCCCCCHHH
Confidence 56899999999875
No 13
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=25.62 E-value=18 Score=25.95 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.7
Q ss_pred eeEEccCCcccCccCc
Q psy3819 84 SAIITDDGIGINPQQT 99 (122)
Q Consensus 84 SAIITndGiGINP~QT 99 (122)
...|+++|+||++.+-
T Consensus 74 ~i~I~DnG~GMs~edl 89 (220)
T 2wer_A 74 VLEIRDSGIGMTKAEL 89 (220)
T ss_dssp EEEEEECSCCCCHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 5789999999998873
No 14
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=25.61 E-value=16 Score=23.70 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=13.1
Q ss_pred ceeEEccCCcccCccC
Q psy3819 83 TSAIITDDGIGINPQQ 98 (122)
Q Consensus 83 TSAIITndGiGINP~Q 98 (122)
-...|+|+|.||++.+
T Consensus 92 ~~i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 92 VVIEVEDDGRGIDKEK 107 (189)
T ss_dssp EEEEEEECSSCCCHHH
T ss_pred EEEEEEeCCCCcCHHH
Confidence 3467899999999985
No 15
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=23.20 E-value=35 Score=21.81 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.4
Q ss_pred eeEEccCCcccCccC
Q psy3819 84 SAIITDDGIGINPQQ 98 (122)
Q Consensus 84 SAIITndGiGINP~Q 98 (122)
...|+|+|.||++.+
T Consensus 79 ~i~V~D~G~gi~~~~ 93 (177)
T 3sl2_A 79 YISVKDEGIGIPKKD 93 (177)
T ss_dssp EEEEECCSSCCCTTT
T ss_pred EEEEEECCCCCCHHH
Confidence 467899999999865
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=22.55 E-value=1e+02 Score=17.12 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=22.2
Q ss_pred CcccCccCcccceeeecCceeeeeecCCCC
Q psy3819 91 GIGINPQQTAGTVFMKHGCELRLIPRDRVG 120 (122)
Q Consensus 91 GiGINP~QTAG~vflKhGseLrlIPRDRVG 120 (122)
|-=++.++|-...-++.|+.+.++.|.|=|
T Consensus 47 g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 47 GKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp TEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 444566778888788999999999987643
No 17
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=21.58 E-value=25 Score=26.03 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=13.8
Q ss_pred ceeEEccCCcccCccC
Q psy3819 83 TSAIITDDGIGINPQQ 98 (122)
Q Consensus 83 TSAIITndGiGINP~Q 98 (122)
....|+++|+||++.+
T Consensus 79 ~~i~I~DnG~GMt~ed 94 (236)
T 2gqp_A 79 NLLHVTDTGVGMTREE 94 (236)
T ss_dssp TEEEEEECSCCCCHHH
T ss_pred CEEEEEECCcCCCHHH
Confidence 3578999999999876
No 18
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=21.47 E-value=28 Score=24.09 Aligned_cols=15 Identities=13% Similarity=0.125 Sum_probs=12.3
Q ss_pred eeEEccCCcccCccC
Q psy3819 84 SAIITDDGIGINPQQ 98 (122)
Q Consensus 84 SAIITndGiGINP~Q 98 (122)
...|+++|.||+|.+
T Consensus 278 ~i~v~D~G~Gi~~~~ 292 (349)
T 3a0r_A 278 RVSVWNSGPPIPEEL 292 (349)
T ss_dssp EEEEEEESCCCCGGG
T ss_pred EEEEEECCCCCChHH
Confidence 356789999999874
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=21.38 E-value=36 Score=26.78 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=17.4
Q ss_pred ceeEEccCCcccCccCcccceeeecCc
Q psy3819 83 TSAIITDDGIGINPQQTAGTVFMKHGC 109 (122)
Q Consensus 83 TSAIITndGiGINP~QTAG~vflKhGs 109 (122)
....|++||.||.+.+-. .+|..|..
T Consensus 64 ~~I~V~DnG~Gi~~~~l~-~~f~~~~t 89 (365)
T 1h7s_A 64 DLIEVSDNGCGVEEENFE-GLTLKHHT 89 (365)
T ss_dssp SEEEEEECSCCCCGGGSG-GGGC----
T ss_pred EEEEEEECCCCcCHHHHH-HHhhhccc
Confidence 468899999999988654 46776643
No 20
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=21.17 E-value=25 Score=25.77 Aligned_cols=17 Identities=24% Similarity=0.646 Sum_probs=14.0
Q ss_pred ceeEEccCCcccCccCc
Q psy3819 83 TSAIITDDGIGINPQQT 99 (122)
Q Consensus 83 TSAIITndGiGINP~QT 99 (122)
....|++||+||++++-
T Consensus 94 ~~i~I~DnG~GMs~edl 110 (235)
T 2ior_A 94 RTLTISDNGVGMTRDEV 110 (235)
T ss_dssp TEEEEEECSSCCCHHHH
T ss_pred eEEEEEECCCCCCHHHH
Confidence 34789999999998864
No 21
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=20.98 E-value=38 Score=25.98 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=18.9
Q ss_pred ceeEEccCCcccCccCcccceeeecCc
Q psy3819 83 TSAIITDDGIGINPQQTAGTVFMKHGC 109 (122)
Q Consensus 83 TSAIITndGiGINP~QTAG~vflKhGs 109 (122)
.+..|++||.||++..-. .+|.+|++
T Consensus 54 ~~i~V~DnG~Gi~~~~l~-~~~~~~~t 79 (333)
T 1b63_A 54 KLIRIRDNGCGIKKDELA-LALARHAT 79 (333)
T ss_dssp SEEEEEECSCCCCGGGHH-HHHSTTCC
T ss_pred eEEEEEEcCCCcCHHHHH-Hhhhcccc
Confidence 467899999999987643 45666643
No 22
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=20.41 E-value=32 Score=21.52 Aligned_cols=15 Identities=47% Similarity=0.693 Sum_probs=12.4
Q ss_pred eeEEccCCcccCccC
Q psy3819 84 SAIITDDGIGINPQQ 98 (122)
Q Consensus 84 SAIITndGiGINP~Q 98 (122)
...|+|+|.||.+.+
T Consensus 79 ~i~i~D~G~gi~~~~ 93 (161)
T 1bxd_A 79 WFQVEDDGPGIAPEQ 93 (161)
T ss_dssp EEEEEEESSCSCTTG
T ss_pred EEEEEeCCCCCCHHH
Confidence 367899999998875
No 23
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=20.14 E-value=78 Score=27.18 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=28.6
Q ss_pred ccCCC-cceeEEccCCcccCccCcccceeeecCceeeeeec
Q psy3819 77 GECPL-VTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPR 116 (122)
Q Consensus 77 fkV~~-aTSAIITndGiGINP~QTAG~vflKhGseLrlIPR 116 (122)
|-.++ ..+||+|-||.| .-....|++..|.++++|-+
T Consensus 129 f~~Spfe~aaVLvvDG~G---e~~T~~v~~~~~~~l~~l~~ 166 (576)
T 3ven_A 129 YYFSGEDRGAVLIVDGQG---EEECVTLAHAEGGKITVLDT 166 (576)
T ss_dssp HTTSSCSEEEEEEECSCS---SSEEEEEEEEETTEEEEEEE
T ss_pred hhcCCCCceEEEEEeCCC---CCceEEEEEeeCCEEEEEEE
Confidence 33444 466899999999 45677899999999998854
Done!