RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3819
         (122 letters)



>d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 92

 Score = 85.3 bits (211), Expect = 1e-23
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query: 80  PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct: 50  PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91


>d1azoa_ c.52.1.14 (A:) DNA mismatch repair protein MutH from
           {Escherichia coli [TaxId: 562]}
          Length = 226

 Score = 25.6 bits (56), Expect = 1.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 92  IGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           +G +        F   G EL+ IP D +G 
Sbjct: 56  LGASAGSKPEQDFAALGVELKTIPVDSLGR 85


>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
           [TaxId: 5664]}
          Length = 374

 Score = 25.5 bits (55), Expect = 2.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 81  LVTSAIITDDGI 92
           L+T  IIT+ G+
Sbjct: 344 LITGGIITEKGV 355


>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein
           PCOLCE {Human (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 23.0 bits (49), Expect = 10.0
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 44  RRGLRVSQGGTGCTYPILPNRSEEDCECPRVGLGECPLVTSAIITDDGIGINP 96
             GL +    T               +CP +  G   L+   +  + G  + P
Sbjct: 55  TGGLDLPSPPT----GASLKFYVPCKQCPPMKKGVSYLLMGQVEENRGPVLPP 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.144    0.473 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,737
Number of extensions: 19868
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 6
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)