BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy382
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 315 bits (808), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 178/221 (80%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L SQ++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 -NIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
+IQFVDWCPTGFKVGIN Q P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 12/143 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL 289
IID + + IR++ + C GFL
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGFL 136
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L SQ
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQ 233
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 315 bits (807), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 178/221 (80%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L SQ++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 -NIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
+IQFVDWCPTGFKVGIN Q P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 12/143 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL 289
IID + + IR++ + C GFL
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGFL 136
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L SQ
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQ 233
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 315 bits (806), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 177/221 (80%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L SQ++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 N-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
IQFVDWCPTGFKVGIN Q P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 91/143 (63%), Gaps = 12/143 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI+GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLISGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL 289
IID + + +R++ + C GFL
Sbjct: 114 IIDLVLDRVRKLADQCTGLQGFL 136
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L SQ
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQ 233
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 314 bits (805), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 181/230 (78%), Gaps = 5/230 (2%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L Q++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 -NIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
+IQFVDWCPTGFKVGIN Q P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDD 535
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+ ED+D
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGIDS----YEDED 444
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 12/143 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL 289
IID + + IR++ + C GFL
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGFL 136
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L Q
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 233
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 313 bits (802), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 140/221 (63%), Positives = 176/221 (79%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L Q++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 N-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
IQFVDWCPTGFKVGIN Q P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 12/143 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL 289
IID + + IR++ + C GFL
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGFL 136
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L Q
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 233
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 312 bits (800), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 140/219 (63%), Positives = 176/219 (80%), Gaps = 1/219 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L SQ++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 -NIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
+IQFVDWCPTGFKVGIN Q P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVAT 524
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV 437
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 12/143 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL 289
IID + + IR++ + C GFL
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGFL 136
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L SQ
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQ 233
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 312 bits (799), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 139/221 (62%), Positives = 176/221 (79%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L Q++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 N-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
IQFVDWCPTGFKVGIN + P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 12/142 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGF 288
IID + + IR++ + C GF
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGF 135
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L Q
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 233
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 310 bits (793), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 138/221 (62%), Positives = 175/221 (79%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L Q++SSITASLRF+GALNVDL+EFQTNLVP+PR HFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 N-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
IQFVDWCPTGFKVGIN + P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 12/142 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGF 288
IID + + IR++ + C GF
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGF 135
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L Q
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 233
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 309 bits (791), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 138/221 (62%), Positives = 175/221 (79%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L Q++SSITASLRF+GALNVDL+EFQTNLVP+PR HFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 N-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
IQFVDWCPTGFKVGIN + P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 12/142 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGF 288
IID + + IR++ + C GF
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGF 135
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L Q
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 233
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 309 bits (791), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 138/221 (62%), Positives = 175/221 (79%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L Q++SSITASLRF+GALNVDL+EFQTNLVP+PR HFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 N-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
IQFVDWCPTGFKVGIN + P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 12/142 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGF 288
IID + + IR++ + C GF
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGF 135
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L Q
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 233
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 309 bits (791), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 138/221 (62%), Positives = 175/221 (79%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L Q++SSITASLRF+GALNVDL+EFQTNLVP+PR HFPLA ++P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 N-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
IQFVDWCPTGFKVGIN + P+V+ GGD+A + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
+ KRAFVHWY+ EGMEE +F +AR+++ LE DY +V D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 12/142 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGF 288
IID + + IR++ + C GF
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGF 135
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L Q
Sbjct: 177 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 233
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 281 bits (720), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 125/224 (55%), Positives = 173/224 (77%), Gaps = 1/224 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
I RP++ NLN+L +QV+SS+TASLRF+G+LNVDL+EFQTNLVP+PRIHFPL ++SP+ +
Sbjct: 220 IPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSK 279
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
+K HE+ V+E+T CF PGNQ+VKC+ + KYMA CLLYRGDV ++V A+ +VK K
Sbjct: 280 SKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNK 339
Query: 427 N-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
+Q VDWCPTGFK+GI + P+ +A ++ V ML+NTT++AEAW ++++KF+LM
Sbjct: 340 KTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLM 399
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADE 529
+ KRAFVHWY+ EGMEE +F +AR++L LE DYI+V D+ E
Sbjct: 400 YAKRAFVHWYVGEGMEEGEFTEAREDLAALERDYIEVGADSYAE 443
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDK-----VSSFFTEMNATK 205
RE +S+++GQAG Q+G++CW+L+ LEHG+ P G + K S+FF E K
Sbjct: 2 REVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGK 61
Query: 206 FTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGK 265
F PRAI VDLEP V D LF+P+QLI+GKEDAANN+ARG T G+
Sbjct: 62 FVPRAIYVDLEPNVIDEVRNGPYKD--------LFHPEQLISGKEDAANNYARGHYTVGR 113
Query: 266 TIIDKLTNTIRRIVENCDTFNGFL 289
I+ + + IR++ + CD GFL
Sbjct: 114 EILGDVLDRIRKLADQCDGLQGFL 137
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 49/57 (85%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+STSVVEPYN++LTTH+TL +ADCTF+VDNEA+Y++C L I RP++ NLN+L +Q
Sbjct: 178 VSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQ 234
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDK-----VSSFFTEMNATK 59
RE +S+++GQAG Q+G++CW+L+ LEHG+ P G + K S+FF E K
Sbjct: 2 REVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGK 61
Query: 60 FTPRAIMVDLEPTV 73
F PRAI VDLEP V
Sbjct: 62 FVPRAIYVDLEPNV 75
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 195/436 (44%), Gaps = 89/436 (20%)
Query: 156 LHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFT---EMNATKFTPRA 210
+ IGQAG Q+ S W+ LEHG+ P+ Q P SSFF+ E ++ + PRA
Sbjct: 9 VSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRA 68
Query: 211 IMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDK 270
IMVDLEP+V D ++ +LFNP LI+ E A NFA G + G+ ++ +
Sbjct: 69 IMVDLEPSVI---------DNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPE 119
Query: 271 LTNTIRRIVENCDTFNGF-------------------------------LSSGLSP---- 295
+ + + ++ CD G LS + P
Sbjct: 120 VMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQV 179
Query: 296 ---------------TLFRNREVTCVIERPAYQNLNH---------------LTSQVMSS 325
TL R+ + + + A +L H L ++ ++
Sbjct: 180 SSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAG 239
Query: 326 ITASLRFEGALNVDLS--EFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAEC 383
ITAS+RF G L V++S E TNLVP P +HF + AF+P++ ++ E LG+ EM
Sbjct: 240 ITASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSL 299
Query: 384 FHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGIN 443
F G+ C+ ++++ +LYRG + + + A + + W PT FK+G
Sbjct: 300 FDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAFKIGYV 359
Query: 444 KQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEED 503
+Q P + K + +L N T +A ++ F+ +++++AF +WYL+EGM E+
Sbjct: 360 EQ-PGI-------SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEE 411
Query: 504 DFIDARDNLLQLELDY 519
R + +L Y
Sbjct: 412 QINVLRASAQELVQSY 427
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 10 LHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFT---EMNATKFTPRA 64
+ IGQAG Q+ S W+ LEHG+ P+ Q P SSFF+ E ++ + PRA
Sbjct: 9 VSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRA 68
Query: 65 IMVDLEPTV 73
IMVDLEP+V
Sbjct: 69 IMVDLEPSV 77
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+S+ V EPYN++ ++ +AD I DNEAL+++ K IE P +LN L ++
Sbjct: 179 VSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITE 235
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 138/258 (53%), Gaps = 13/258 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYSIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTAD 528
N+ L +Y TAD
Sbjct: 414 NMNDLVSEYQQYQDATAD 431
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 132/234 (56%), Gaps = 9/234 (3%)
Query: 304 TCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPI 363
T + +P+Y +LN+L S VMS +T SLR+ G LN DL + NLVPFPR+HF + ++P+
Sbjct: 214 TLKLNQPSYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPL 273
Query: 364 STCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKV 423
+ +L V E+T + F N + + N +Y+ +RG V+ +EV ++KV
Sbjct: 274 TAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKV 333
Query: 424 KTKNIQ-FVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKF 482
++KN FV+W P + + P G DMA T + N+T++ E + ++ +F
Sbjct: 334 QSKNSDYFVEWIPNNVQTAVCSVAPQ---GLDMA-----ATFIANSTSIQELFKRVGDQF 385
Query: 483 ELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDDS 536
MF+++AF+HWY SEGM+E +F +A N+ L +Y T ++ E D++
Sbjct: 386 SAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEVDEN 439
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G + W+ EHGL G I+ ++++ +F E ++ K+ P
Sbjct: 2 REIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
R+I VDLEP + S + NLF PD I G+ A N +A+G T G ++
Sbjct: 62 RSINVDLEPGTIDAVRNSAIG--------NLFRPDNYIFGQSSAGNVWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + IRR E CD+ GF
Sbjct: 114 DSVMDVIRREAEGCDSLQGF 133
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 94 STSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
S + VEPYN+ L+ H + ++D TF +DNEALY+IC L + +P+Y +LN+L S
Sbjct: 176 SDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVS 230
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G + W+ EHGL G I+ ++++ +F E ++ K+ P
Sbjct: 2 REIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVP 61
Query: 63 RAIMVDLEP 71
R+I VDLEP
Sbjct: 62 RSINVDLEP 70
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYSIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTA 527
N+ L +Y TA
Sbjct: 414 NMNDLVSEYQQYQDATA 430
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYSIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTA 527
N+ L +Y TA
Sbjct: 414 NMNDLVSEYQQYQDATA 430
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYSIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTA 527
N+ L +Y TA
Sbjct: 414 NMNDLVSEYQQYQDATA 430
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYSIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + ++ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMSS-----TFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTA 527
N+ L +Y TA
Sbjct: 414 NMNDLVSEYQQYQDATA 430
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTA 527
N+ L +Y TA
Sbjct: 414 NMNDLVSEYQQYQDATA 430
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTA 527
N+ L +Y TA
Sbjct: 414 NMNDLVSEYQQYQDATA 430
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTA 527
N+ L +Y TA
Sbjct: 414 NMNDLVSEYQQYQDATA 430
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 135/249 (54%), Gaps = 13/249 (5%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR ++T P Y +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTT----PTYGDLNHLVSATMSGVTTCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N +
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQKPSVI 450
C+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR-- 359
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 360 -GLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDY 519
N+ L +Y
Sbjct: 414 NMNDLVSEY 422
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ E+CD GF
Sbjct: 114 DSVLDVVRKESESCDCLQGF 133
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 175 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 63 RAIMVDLEP 71
RAI+VDLEP
Sbjct: 62 RAILVDLEP 70
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 128/252 (50%), Gaps = 16/252 (6%)
Query: 274 TIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFE 333
T++RI++N D L + LFR + + P Y +LN++ + ++SS+TASLRF
Sbjct: 189 TLQRILDNAD--GAVLLD--NEALFRIAKAK-LNRSPNYMDLNNIIALIVSSVTASLRFP 243
Query: 334 GALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKC 393
G LN DLSEF TNLVPFP HF A+F+P+ + ++ E F N
Sbjct: 244 GKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNFTAAI 303
Query: 394 NVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPT--GFKVGINKQKPSVIA 451
+ Y+A L+RGDV ++V+ + ++ K++ + + P G K+G + P A
Sbjct: 304 DWQQGVYLAASALFRGDVKAKDVDENMATIR-KSLNYASYMPASGGLKLGYAETAPEGFA 362
Query: 452 GGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDN 511
+A L N T +A + +L +F++MF+ A+ HWY + G+ D AR+
Sbjct: 363 SSGLA--------LVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQ 414
Query: 512 LLQLELDYIDVA 523
+ L Y D +
Sbjct: 415 IATLAQSYRDAS 426
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG---EQLQPIRDDKVSSFFTEMNATKFT 207
RE LS+H+GQ G Q+ DS W+L L EHGL+ G E + + FF ++ K+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYV 61
Query: 208 PRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTI 267
PRA++VDLEP V +S LF+ ++ AANN+ARG G+ +
Sbjct: 62 PRAVLVDLEPGVIARIEGGDMS--------QLFDESSIVRKIPGAANNWARGYNVEGEKV 113
Query: 268 IDKLTNTIRRIVENCDTFNGFL 289
ID++ N I VE GFL
Sbjct: 114 IDQIMNVIDSAVEKTKGLQGFL 135
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG---EQLQPIRDDKVSSFFTEMNATKFT 61
RE LS+H+GQ G Q+ DS W+L L EHGL+ G E + + FF ++ K+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYV 61
Query: 62 PRAIMVDLEPTV 73
PRA++VDLEP V
Sbjct: 62 PRAVLVDLEPGV 73
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
IS S VEPYN+ILT L+NAD ++DNEAL+ I KL P Y +LN++ +
Sbjct: 176 ISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIA 230
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/453 (24%), Positives = 205/453 (45%), Gaps = 95/453 (20%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSP--IGEQLQPIRDDKVSSFFTEMNATKFTP 208
RE ++L +GQ G Q+G W+ EHG+SP I E+ D+ FF + + + P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKE--DAANNFARGRMTCGKT 266
RA+++DLEP V S L S + L+NP+ + + A NN+A G + G+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYA--------KLYNPENIYLSEHGGGAGNNWASG-FSQGEK 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL---------SSGLSPTL------------------FR 299
I + + + I R + D+ GF+ SGL L F
Sbjct: 114 IHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFP 173
Query: 300 NR-EVTCVIERP--AYQNLNHLT--------------------------------SQVMS 324
N+ E++ V+ +P + L LT +Q++S
Sbjct: 174 NQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVS 233
Query: 325 SI----TASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIH-ENLGVAEM 379
+I T +LR+ G +N DL +L+P PR+HF + ++P++T V ++
Sbjct: 234 TIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDV 293
Query: 380 TAECFHPGNQLV---KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNI-QFVDWCP 435
P N +V + TNH Y+A + +G+V P +V+ +L +++ + + F+ W P
Sbjct: 294 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353
Query: 436 TGFKVGINKQKPSVIAGGDMAPSNKLVT--MLTNTTAMAEAWSKLNKKFELMFEKRAFVH 493
+V ++++ P + PS V+ M+ N T+++ + + ++++ + ++ AF+
Sbjct: 354 ASIQVALSRKSPYL-------PSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLE 406
Query: 494 WYLSEGMEEDDF--IDARDNLLQLELDYIDVAT 524
+ E M +D+F +D ++Q +D AT
Sbjct: 407 QFRKEDMFKDNFDEMDTSREIVQQLIDEYHAAT 439
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSP--IGEQLQPIRDDKVSSFFTEMNATKFTP 62
RE ++L +GQ G Q+G W+ EHG+SP I E+ D+ FF + + + P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 63 RAIMVDLEPTV 73
RA+++DLEP V
Sbjct: 63 RAVLLDLEPRV 73
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S VV+PYNS+LT NADC ++DN AL I + +L I+ P++ +N L S
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVS 233
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/453 (24%), Positives = 205/453 (45%), Gaps = 95/453 (20%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSP--IGEQLQPIRDDKVSSFFTEMNATKFTP 208
RE ++L +GQ G Q+G W+ EHG+SP I E+ D+ FF + + + P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKE--DAANNFARGRMTCGKT 266
RA+++DLEP V S L S + L+NP+ + + A NN+A G + G+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYA--------KLYNPENIYLSEHGGGAGNNWASG-FSQGEK 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL---------SSGLSPTL------------------FR 299
I + + + I R + D+ GF+ SGL L F
Sbjct: 114 IHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFP 173
Query: 300 NR-EVTCVIERP--AYQNLNHLT--------------------------------SQVMS 324
N+ E++ V+ +P + L LT +Q++S
Sbjct: 174 NQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVS 233
Query: 325 SI----TASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIH-ENLGVAEM 379
+I T +LR+ G +N DL +L+P PR+HF + ++P++T V ++
Sbjct: 234 TIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDV 293
Query: 380 TAECFHPGNQLV---KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNI-QFVDWCP 435
P N +V + TNH Y+A + +G+V P +V+ +L +++ + + F+ W P
Sbjct: 294 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353
Query: 436 TGFKVGINKQKPSVIAGGDMAPSNKLVT--MLTNTTAMAEAWSKLNKKFELMFEKRAFVH 493
+V ++++ P + PS V+ M+ N T+++ + + ++++ + ++ AF+
Sbjct: 354 ASIQVALSRKSPYL-------PSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLE 406
Query: 494 WYLSEGMEEDDF--IDARDNLLQLELDYIDVAT 524
+ E M +D+F +D ++Q +D AT
Sbjct: 407 QFRKEDMFKDNFDEMDTSREIVQQLIDEYHAAT 439
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSP--IGEQLQPIRDDKVSSFFTEMNATKFTP 62
RE ++L +GQ G Q+G W+ EHG+SP I E+ D+ FF + + + P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 63 RAIMVDLEPTV 73
RA+++DLEP V
Sbjct: 63 RAVLLDLEPRV 73
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 93 ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+S VV+PYNS+LT NADC ++DN AL I + +L I+ P++ +N L S
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVS 233
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From
Leptospirillum Rubarum
Length = 355
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 330 LRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSP 362
L+F+G LN L+ F+ PFP+ FP+ F+P
Sbjct: 269 LKFQGHLNRSLAGFRLEGGPFPKXEFPVTLFNP 301
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 178 GLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRP 237
G P GE RD + +FF ++ K R I +P V G G + +P
Sbjct: 264 GCGPEGE-----RDVREHAFFRRIDWEKLENREIQPPFKPKVCGKGAEN-FDKFFTRGQP 317
Query: 238 NLFNPDQLIAGKEDAAN 254
L PDQL+ D ++
Sbjct: 318 VLXPPDQLVIANIDQSD 334
>pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM
SINORHIZOBIUM Meliloti 1021
Length = 271
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 347 LVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGN 388
LVP+P I A+ + ++ TK + +LG +T HPG+
Sbjct: 171 LVPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGS 212
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 461 LVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQL 515
L L +AE W+K+ K EL+ +++ YL+EG + R+ +LQL
Sbjct: 105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGE--KKRNEILQL 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,756,217
Number of Sequences: 62578
Number of extensions: 588503
Number of successful extensions: 1434
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 125
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)