Query psy382
Match_columns 536
No_of_seqs 269 out of 1557
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 18:12:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 1E-109 2E-114 816.6 26.3 370 150-532 1-438 (443)
2 PLN00221 tubulin alpha chain; 100.0 9.6E-92 2.1E-96 744.9 26.4 372 150-529 1-442 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1.6E-90 3.5E-95 735.1 27.3 372 150-529 1-442 (448)
4 PTZ00010 tubulin beta chain; P 100.0 1.8E-87 4E-92 712.8 26.4 361 150-526 1-429 (445)
5 cd02188 gamma_tubulin Gamma-tu 100.0 1.6E-86 3.4E-91 701.5 24.4 355 151-519 1-431 (431)
6 cd02186 alpha_tubulin The tubu 100.0 2.5E-86 5.4E-91 702.7 25.5 364 151-522 1-434 (434)
7 PLN00222 tubulin gamma chain; 100.0 2.7E-86 5.9E-91 703.1 25.7 366 150-529 2-448 (454)
8 PLN00220 tubulin beta chain; P 100.0 2.8E-86 6.2E-91 705.4 25.6 360 150-525 1-428 (447)
9 PTZ00387 epsilon tubulin; Prov 100.0 4.8E-85 1E-89 693.8 25.5 351 150-523 1-450 (465)
10 cd02187 beta_tubulin The tubul 100.0 2.5E-84 5.5E-89 686.3 25.9 356 151-522 1-424 (425)
11 KOG1374|consensus 100.0 4.4E-82 9.5E-87 622.2 23.3 363 150-526 2-443 (448)
12 cd02189 delta_tubulin The tubu 100.0 4.4E-79 9.6E-84 649.4 27.1 350 153-520 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 1.4E-78 3.1E-83 633.0 21.6 325 151-522 1-379 (379)
14 KOG1376|consensus 100.0 2E-76 4.4E-81 580.7 14.6 336 150-516 1-406 (407)
15 cd06059 Tubulin The tubulin su 100.0 2.1E-69 4.6E-74 567.6 23.4 316 152-521 1-382 (382)
16 KOG1375|consensus 100.0 4.9E-50 1.1E-54 396.7 12.2 291 191-523 8-350 (369)
17 COG5023 Tubulin [Cytoskeleton] 100.0 1.1E-48 2.5E-53 385.4 7.3 153 4-156 1-238 (443)
18 cd00286 Tubulin_FtsZ Tubulin/F 100.0 2E-44 4.3E-49 372.0 16.8 263 152-468 1-328 (328)
19 KOG1374|consensus 100.0 3.1E-43 6.8E-48 347.3 6.2 152 4-155 2-240 (448)
20 PLN00222 tubulin gamma chain; 100.0 2E-37 4.3E-42 329.5 9.6 155 4-158 2-243 (454)
21 PLN00221 tubulin alpha chain; 100.0 1.1E-37 2.3E-42 331.5 6.8 154 4-157 1-241 (450)
22 PTZ00335 tubulin alpha chain; 100.0 3.3E-36 7.1E-41 320.0 7.7 153 4-156 1-240 (448)
23 cd02188 gamma_tubulin Gamma-tu 100.0 1.3E-35 2.9E-40 313.9 8.1 167 5-172 1-254 (431)
24 PTZ00010 tubulin beta chain; P 100.0 2.9E-35 6.4E-40 313.1 7.8 154 4-157 1-239 (445)
25 PLN00220 tubulin beta chain; P 100.0 5.2E-35 1.1E-39 311.9 8.8 152 4-155 1-237 (447)
26 PTZ00387 epsilon tubulin; Prov 100.0 1E-34 2.3E-39 308.9 7.3 147 4-155 1-264 (465)
27 cd02186 alpha_tubulin The tubu 100.0 2.1E-34 4.5E-39 306.0 5.9 152 5-156 1-239 (434)
28 cd02189 delta_tubulin The tubu 100.0 9.6E-34 2.1E-38 301.9 6.2 149 7-157 2-234 (446)
29 cd02187 beta_tubulin The tubul 100.0 1.8E-33 4E-38 298.3 7.8 153 5-157 1-238 (425)
30 KOG1376|consensus 100.0 9.2E-32 2E-36 265.5 7.8 152 4-155 1-238 (407)
31 cd06060 misato Human Misato sh 100.0 9.3E-29 2E-33 263.5 25.3 356 151-521 1-493 (493)
32 PF00091 Tubulin: Tubulin/FtsZ 100.0 6.9E-30 1.5E-34 248.3 3.8 140 152-301 1-149 (216)
33 PF00091 Tubulin: Tubulin/FtsZ 99.9 5.4E-28 1.2E-32 235.0 2.9 133 6-141 1-215 (216)
34 cd02190 epsilon_tubulin The tu 99.9 7.7E-26 1.7E-30 236.5 3.6 111 5-155 1-193 (379)
35 PF03953 Tubulin_C: Tubulin C- 99.9 1.4E-24 3.1E-29 193.0 9.8 125 351-480 1-126 (126)
36 cd06059 Tubulin The tubulin su 99.8 8.4E-22 1.8E-26 207.3 4.5 151 6-159 1-200 (382)
37 cd00286 Tubulin_FtsZ Tubulin/F 99.8 1.9E-19 4.2E-24 186.0 3.7 79 84-162 118-202 (328)
38 smart00864 Tubulin Tubulin/Fts 99.7 9.8E-19 2.1E-23 166.9 3.5 124 196-334 3-192 (192)
39 KOG2530|consensus 99.7 3E-17 6.6E-22 166.9 8.0 151 150-301 1-228 (483)
40 KOG1375|consensus 99.5 3.5E-15 7.6E-20 149.1 4.2 97 43-139 6-165 (369)
41 cd02202 FtsZ_type2 FtsZ is a G 99.4 7.8E-13 1.7E-17 137.2 7.8 163 152-361 2-234 (349)
42 smart00864 Tubulin Tubulin/Fts 99.2 1.1E-12 2.5E-17 125.1 -2.8 70 84-155 111-185 (192)
43 cd06060 misato Human Misato sh 99.2 1.6E-11 3.5E-16 131.7 5.0 65 5-73 1-69 (493)
44 cd02191 FtsZ FtsZ is a GTPase 99.0 7.5E-10 1.6E-14 112.8 6.9 153 153-357 3-215 (303)
45 cd02202 FtsZ_type2 FtsZ is a G 98.8 6.8E-10 1.5E-14 115.4 0.9 58 90-152 138-195 (349)
46 TIGR00065 ftsZ cell division p 98.8 6.2E-09 1.4E-13 107.9 6.1 159 152-361 19-236 (349)
47 cd02201 FtsZ_type1 FtsZ is a G 98.8 7E-09 1.5E-13 106.1 6.1 147 153-349 3-209 (304)
48 PF10644 Misat_Tub_SegII: Misa 98.7 1.1E-08 2.5E-13 89.2 3.7 64 151-218 1-68 (115)
49 cd02191 FtsZ FtsZ is a GTPase 98.6 9.1E-09 2E-13 104.9 1.5 64 90-155 123-186 (303)
50 PRK13018 cell division protein 98.6 7.1E-08 1.5E-12 100.6 6.5 209 152-425 30-300 (378)
51 PF14881 Tubulin_3: Tubulin do 98.6 9.2E-08 2E-12 90.0 6.7 48 254-301 41-98 (180)
52 TIGR00065 ftsZ cell division p 98.4 3.5E-08 7.7E-13 102.3 0.1 61 90-152 140-200 (349)
53 smart00865 Tubulin_C Tubulin/F 98.4 9.1E-08 2E-12 83.6 1.9 113 336-479 1-119 (120)
54 cd02201 FtsZ_type1 FtsZ is a G 98.4 7.7E-08 1.7E-12 98.4 -0.1 78 74-152 91-184 (304)
55 PF10644 Misat_Tub_SegII: Misa 98.2 1.2E-06 2.7E-11 76.4 4.1 64 5-72 1-68 (115)
56 PRK13018 cell division protein 98.1 1.2E-06 2.5E-11 91.6 1.4 60 91-152 143-211 (378)
57 KOG2530|consensus 98.0 3.8E-06 8.2E-11 86.7 4.0 69 4-73 1-73 (483)
58 PRK09330 cell division protein 97.7 3.1E-05 6.6E-10 81.1 4.4 158 152-359 15-231 (384)
59 PRK09330 cell division protein 97.6 1.3E-05 2.8E-10 83.9 -0.9 61 90-151 136-196 (384)
60 COG0206 FtsZ Cell division GTP 49.6 8.1 0.00017 40.1 1.2 36 94-129 138-173 (338)
61 COG1528 Ftn Ferritin-like prot 40.7 28 0.00062 32.2 3.2 49 470-524 96-146 (167)
62 PF02020 W2: eIF4-gamma/eIF5/e 28.5 52 0.0011 26.7 2.6 50 468-517 18-71 (84)
63 PF08259 Periviscerokin: Periv 26.0 31 0.00066 17.1 0.5 9 345-353 3-11 (11)
64 PF12210 Hrs_helical: Hepatocy 25.6 1.6E+02 0.0035 24.6 4.9 53 465-522 28-89 (96)
65 PF04695 Pex14_N: Peroxisomal 21.1 43 0.00092 30.0 0.8 28 486-516 24-51 (136)
66 PF02044 Bombesin: Bombesin-li 20.2 27 0.00059 18.4 -0.4 10 253-262 1-10 (14)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.1e-109 Score=816.60 Aligned_cols=370 Identities=47% Similarity=0.837 Sum_probs=353.5
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC--CcCCCCCccccccCCCCccccEEEEeCCccccccccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSL 227 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~--~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~ 227 (536)
|||||+||+||||||||++||+++|+||||.++|...+. ...+..++||+|++.|||+||||+|||||.||++++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g- 79 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNG- 79 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccC-
Confidence 899999999999999999999999999999999986543 45688999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHH
Q psy382 228 LSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLF 298 (536)
Q Consensus 228 ~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ll 298 (536)
+|+.+|+|+|++++|+|||||||+|||+.|+++.|.++|+|||++|.||+||||++ |||||+||
T Consensus 80 -------~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLL 152 (443)
T COG5023 80 -------PYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLL 152 (443)
T ss_pred -------ccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred -----------------------------------------Hhh--------------h-hhcCCCCCChhhHHHHHHHH
Q psy382 299 -----------------------------------------RNR--------------E-VTCVIERPAYQNLNHLTSQV 322 (536)
Q Consensus 299 -----------------------------------------E~~--------------~-~~l~i~~~s~~~lN~lIA~~ 322 (536)
||+ | ++|++.+|+|.|+|++||++
T Consensus 153 erl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~V 232 (443)
T COG5023 153 ERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTV 232 (443)
T ss_pred HHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 222 1 79999999999999999999
Q ss_pred hhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceee
Q psy382 323 MSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMA 402 (536)
Q Consensus 323 lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls 402 (536)
|+++|+++||||++|+||++|.+||||+|++||+.++|+|++...+..+++.|+.+++++||+++|+|++|+|++++|++
T Consensus 233 mSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~ 312 (443)
T COG5023 233 MSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMA 312 (443)
T ss_pred HHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHHH
Q psy382 403 CCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKK 481 (536)
Q Consensus 403 ~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~ 481 (536)
+++++||++.++|+.+++.+++.|+ ++||+|+|+++|+++|+.+|. ..++.++++|+|+|+|+|...|+++.+|
T Consensus 313 ~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~-----~~~~~~~s~~~lsNtTsi~e~fkr~~~q 387 (443)
T COG5023 313 VCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPS-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQ 387 (443)
T ss_pred hhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCc-----ccccceeeeEeecCcHHHHHHHHHhhhH
Confidence 9999999999999999999999999 999999999999999998883 3445788999999999999999999999
Q ss_pred HHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhhccccccccC
Q psy382 482 FELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILE 532 (536)
Q Consensus 482 f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~~~ 532 (536)
|++||+||||||||+++|||++||.||++.+++|+++|++++++..++|+.
T Consensus 388 Fd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~ 438 (443)
T COG5023 388 FDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE 438 (443)
T ss_pred HHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence 999999999999999999999999999999999999999998888765543
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=9.6e-92 Score=744.88 Aligned_cols=372 Identities=55% Similarity=0.971 Sum_probs=346.2
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC----CcCCCCCccccccCCCCccccEEEEeCCccccccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP----IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLT 225 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~----~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~ 225 (536)
|+|||+||+||||||||.+||+++|+||+++++|..... ...+..++||+|+.+++|+||||||||||+||++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 899999999999999999999999999999999865332 1245788999999999999999999999999999998
Q ss_pred cccccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHH
Q psy382 226 SLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPT 296 (536)
Q Consensus 226 ~~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ 296 (536)
+ +++++|++++++++++|||||||+|||..|+++.|+++|+|||++|+||+||||++ |||||+
T Consensus 81 ~--------~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~ 152 (450)
T PLN00221 81 G--------TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152 (450)
T ss_pred C--------ccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHH
Confidence 8 77899999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhh-------------------------------------------------------h-hhcCCCCCChhhHHHHHH
Q psy382 297 LFRNR-------------------------------------------------------E-VTCVIERPAYQNLNHLTS 320 (536)
Q Consensus 297 llE~~-------------------------------------------------------~-~~l~i~~~s~~~lN~lIA 320 (536)
|+|.+ | +.+++++|+|.+||++||
T Consensus 153 ~le~l~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa 232 (450)
T PLN00221 153 LLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLIS 232 (450)
T ss_pred HHHHHHHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 99211 1 567889999999999999
Q ss_pred HHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCce
Q psy382 321 QVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKY 400 (536)
Q Consensus 321 ~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ 400 (536)
++|+++|+++||||++|+||++|++||||||++||++++++|+++.....+..++|.+|+.++|+++++|+.++|+.++|
T Consensus 233 ~~is~~T~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~ky 312 (450)
T PLN00221 233 QVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312 (450)
T ss_pred hhcccccccccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchH
Confidence 99999999999999999999999999999999999999999999877667788999999999999999999999999999
Q ss_pred eeeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHH
Q psy382 401 MACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLN 479 (536)
Q Consensus 401 ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~ 479 (536)
||+++++||++.+.++.+++.+++.++ +.|++|+|++++++++.++|...+...+.+.++++++++|+|+|..+|+++.
T Consensus 313 la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~ 392 (450)
T PLN00221 313 MACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRID 392 (450)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHH
Confidence 999999999999999999999987777 9999999999999999998876666666667899999999999999999999
Q ss_pred HHHHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhhcccccc
Q psy382 480 KKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADE 529 (536)
Q Consensus 480 ~~f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~ 529 (536)
++|++||+||||||||+++||||+||.||+++|++|+++|+++..+..++
T Consensus 393 ~~f~~mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (450)
T PLN00221 393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 442 (450)
T ss_pred HHHHHHHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999997665443
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.6e-90 Score=735.08 Aligned_cols=372 Identities=55% Similarity=0.978 Sum_probs=345.7
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC----CcCCCCCccccccCCCCccccEEEEeCCccccccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP----IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLT 225 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~----~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~ 225 (536)
|+|||+||+||||||||.+||+++++||+++++|..... ..++..++||+|+.+++|+||||||||||+||++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 899999999999999999999999999999999866432 1246788999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHH
Q psy382 226 SLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPT 296 (536)
Q Consensus 226 ~~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ 296 (536)
+ +++.+|++++++++++|||||||+|||..|+++.|+++|+|||++|+||+||||++ ||+||+
T Consensus 81 ~--------~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~ 152 (448)
T PTZ00335 81 G--------TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSL 152 (448)
T ss_pred C--------ccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHH
Confidence 8 77889999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhh-------------------------------------------------------h-hhcCCCCCChhhHHHHHH
Q psy382 297 LFRNR-------------------------------------------------------E-VTCVIERPAYQNLNHLTS 320 (536)
Q Consensus 297 llE~~-------------------------------------------------------~-~~l~i~~~s~~~lN~lIA 320 (536)
|+|.+ | +.++++.|+|.+||++||
T Consensus 153 l~e~l~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia 232 (448)
T PTZ00335 153 LLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIA 232 (448)
T ss_pred HHHHHHHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99211 1 567788899999999999
Q ss_pred HHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCce
Q psy382 321 QVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKY 400 (536)
Q Consensus 321 ~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ 400 (536)
++|+++|+++||||+++.|+++|++||||||++||++++++|+++.....++.++|.+|++++|+++++++.++|+.++|
T Consensus 233 ~~is~~t~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ 312 (448)
T PTZ00335 233 QVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKY 312 (448)
T ss_pred hhhcccccccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccch
Confidence 99999999999999999999999999999999999999999999877777788999999999999999999999999999
Q ss_pred eeeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHH
Q psy382 401 MACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLN 479 (536)
Q Consensus 401 ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~ 479 (536)
||+++++||+..+.++.+.+.+++.++ +.|++|+|+++++++|+++|...+...+.+.++++++|+|+|+|..+|+++.
T Consensus 313 ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~ 392 (448)
T PTZ00335 313 MACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRID 392 (448)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHH
Confidence 999999999999999999999998777 9999999999999999998876666666667899999999999999999999
Q ss_pred HHHHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhhcccccc
Q psy382 480 KKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADE 529 (536)
Q Consensus 480 ~~f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~ 529 (536)
++|++||+||||||||+++||||+||.||+++|++|+++|+++..+..+|
T Consensus 393 ~~f~~mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (448)
T PTZ00335 393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADE 442 (448)
T ss_pred HHHHHHHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999999999999999999999999999999999999999996554443
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.8e-87 Score=712.75 Aligned_cols=361 Identities=34% Similarity=0.651 Sum_probs=336.8
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC--CcCCCCCccccccCCCCccccEEEEeCCccccccccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSL 227 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~--~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~ 227 (536)
|+|||+||+||||||||.+||+++++||+++++|.+... ...+..++||+|..+|+|+|||||||+||+||++++.+
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~- 79 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAG- 79 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhccc-
Confidence 899999999999999999999999999999998865432 12356789999999999999999999999999999887
Q ss_pred cccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHH
Q psy382 228 LSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLF 298 (536)
Q Consensus 228 ~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ll 298 (536)
+++.+|++++++++++|+|||||+|||..|+++.++++|+|||++|+||++|||++ ||+||+|+
T Consensus 80 -------~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~ 152 (445)
T PTZ00010 80 -------PYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLI 152 (445)
T ss_pred -------chhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHH
Confidence 77789999999999999999999999999999999999999999999999999999 99999998
Q ss_pred Hhh-------------------------------------------------------h-hhcCCCCCChhhHHHHHHHH
Q psy382 299 RNR-------------------------------------------------------E-VTCVIERPAYQNLNHLTSQV 322 (536)
Q Consensus 299 E~~-------------------------------------------------------~-~~l~i~~~s~~~lN~lIA~~ 322 (536)
|.+ | +++++++|+|.+||++||++
T Consensus 153 e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~ 232 (445)
T PTZ00010 153 SKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAV 232 (445)
T ss_pred HHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhh
Confidence 211 1 56889999999999999999
Q ss_pred hhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceee
Q psy382 323 MSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMA 402 (536)
Q Consensus 323 lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls 402 (536)
|+++|+++||||++|.||++|++||||||++||++++++|+++..+..++.++|.+|++++|+++++++.++|+.++|+|
T Consensus 233 is~~t~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la 312 (445)
T PTZ00010 233 MSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLT 312 (445)
T ss_pred ccccccceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHH
Confidence 99999999999999999999999999999999999999999987777788899999999999999999999999999999
Q ss_pred eeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHHH
Q psy382 403 CCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKK 481 (536)
Q Consensus 403 ~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~ 481 (536)
+++++||++.++++.+++.+++.++ +.|++|+|+++++++|.++|. +.++++++|+|+|+|..+|+++.++
T Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~lsNstsi~~~~~~i~~~ 384 (445)
T PTZ00010 313 ASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPK--------GLKMSVTFIGNSTAIQEMFRRVGEQ 384 (445)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCc--------CccceEEEecCCcHHHHHHHHHHHH
Confidence 9999999999999999999887777 999999999999999988764 2567999999999999999999999
Q ss_pred HHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhhccc
Q psy382 482 FELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526 (536)
Q Consensus 482 f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~ 526 (536)
|++||+||||||||+++||||+||.||+++|++|+++|+++....
T Consensus 385 f~~m~~rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred HHHHHhcCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999986554
No 5
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.6e-86 Score=701.47 Aligned_cols=355 Identities=30% Similarity=0.558 Sum_probs=329.8
Q ss_pred cccceecccccccccchhhhhhhhhhcCCCCCCCcccC--CcCCCCCccccccCCCCccccEEEEeCCcccccccccccc
Q psy382 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLL 228 (536)
Q Consensus 151 ~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~--~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~ 228 (536)
+|||+||+||||||||.+||+++++||+++++|..... ..++..++||+|.++++|+||||||||||+||++++.+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~-- 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS-- 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcC--
Confidence 69999999999999999999999999999999876443 23567889999999999999999999999999999998
Q ss_pred ccccccCCCCCCCCCceecCCC--CccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHH
Q psy382 229 SDQLQHQRPNLFNPDQLIAGKE--DAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTL 297 (536)
Q Consensus 229 ~~~~~~~~~~~f~~~n~i~~~~--gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~l 297 (536)
+++++|+|++++++++ |||||||+||+ .|+++.|+++|+|||++|+||++|||++ ||+||+|
T Consensus 79 ------~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l 151 (431)
T cd02188 79 ------EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYL 151 (431)
T ss_pred ------ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHH
Confidence 7788999999999998 99999999965 6999999999999999999999999999 8999999
Q ss_pred HHhh--------------------------------------------------------h-hhcCCCCCChhhHHHHHH
Q psy382 298 FRNR--------------------------------------------------------E-VTCVIERPAYQNLNHLTS 320 (536)
Q Consensus 298 lE~~--------------------------------------------------------~-~~l~i~~~s~~~lN~lIA 320 (536)
+|.+ | +.++++.|+|.+||++||
T Consensus 152 ~e~L~d~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia 231 (431)
T cd02188 152 LERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVS 231 (431)
T ss_pred HHHHHhHcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 9321 1 567888999999999999
Q ss_pred HHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCC-cccccccCHHHHHHhhcCCCCceeeccC-CCC
Q psy382 321 QVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCT-KTIHENLGVAEMTAECFHPGNQLVKCNV-TNH 398 (536)
Q Consensus 321 ~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~-~~~~~~~t~~~l~~~~f~~~n~~~~~~~-~~~ 398 (536)
++|+++|+|+||||.+|+|+++|++||||||++||++++++|+++.. +..++..+|.+|++.+|++.++|+.++| +++
T Consensus 232 ~~ls~~t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~ 311 (431)
T cd02188 232 TVMSASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNG 311 (431)
T ss_pred ccCCCcccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccc
Confidence 99999999999999999999999999999999999999999999877 5778889999999999999999999999 899
Q ss_pred ceeeeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHH
Q psy382 399 KYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSK 477 (536)
Q Consensus 399 ~~ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~ 477 (536)
+|||+++++||++.++++.+.+.+++.++ +.|++|+|+++++++|+++|...+. .++++++++|+|+|.++|++
T Consensus 312 k~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~ 386 (431)
T cd02188 312 CYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTA-----HRVSGLMLANHTSIASLFER 386 (431)
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCC-----CceeEEEecCChHHHHHHHH
Confidence 99999999999999999999999998877 8899999999999999888753322 45789999999999999999
Q ss_pred HHHHHHHHhhcccchhhhccCCCC---hhhHHHHHHHHHHHHHHH
Q psy382 478 LNKKFELMFEKRAFVHWYLSEGME---EDDFIDARDNLLQLELDY 519 (536)
Q Consensus 478 l~~~f~~m~~kkAflH~Y~~~Gme---e~eF~Ea~~~l~~li~~Y 519 (536)
+.+||++||+||||||||+++||| ++||.||+++|++|+++|
T Consensus 387 i~~kf~~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 387 ILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HHHHHHHHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999 999999999999999998
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.5e-86 Score=702.71 Aligned_cols=364 Identities=59% Similarity=1.022 Sum_probs=339.7
Q ss_pred cccceecccccccccchhhhhhhhhhcCCCCCCCcccC----CcCCCCCccccccCCCCccccEEEEeCCcccccccccc
Q psy382 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP----IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTS 226 (536)
Q Consensus 151 ~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~----~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~ 226 (536)
+|||+||+||||||||.+||+++++||+++++|..... ..++..++||+|+.+++|+|||||||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 69999999999999999999999999999999865432 13467889999999999999999999999999999987
Q ss_pred ccccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHH
Q psy382 227 LLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTL 297 (536)
Q Consensus 227 ~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~l 297 (536)
+++.+|++++++.+++|+|||||+|||..|+++.|+++|+|||++|+||++|||++ ||+||+|
T Consensus 81 --------~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l 152 (434)
T cd02186 81 --------TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLL 152 (434)
T ss_pred --------ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHhh-------------------------------------------------------h-hhcCCCCCChhhHHHHHHH
Q psy382 298 FRNR-------------------------------------------------------E-VTCVIERPAYQNLNHLTSQ 321 (536)
Q Consensus 298 lE~~-------------------------------------------------------~-~~l~i~~~s~~~lN~lIA~ 321 (536)
+|.+ | +.++++.|+|.+||++||+
T Consensus 153 ~e~l~d~y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~ 232 (434)
T cd02186 153 LERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQ 232 (434)
T ss_pred HHHHHHhcCccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHH
Confidence 9321 1 5567888999999999999
Q ss_pred HhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCcee
Q psy382 322 VMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYM 401 (536)
Q Consensus 322 ~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~l 401 (536)
+|+++|+++||||.++.|+++|++||||||++||++++++|+++.....+..++|.+|++++|++.++|+.++|+.++||
T Consensus 233 ~l~~~t~~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~l 312 (434)
T cd02186 233 VVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYM 312 (434)
T ss_pred HhhccccceecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHH
Confidence 99999999999999999999999999999999999999999998777777889999999999999999999999999999
Q ss_pred eeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHH
Q psy382 402 ACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNK 480 (536)
Q Consensus 402 s~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~ 480 (536)
|+++++||++.++++.+++.+++.++ +.|++|+|+++++++|+++|...+...+.+.++++++|+|+|+|.++|+++.+
T Consensus 313 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~ 392 (434)
T cd02186 313 ACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDH 392 (434)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHH
Confidence 99999999999999999999887766 99999999999999999988766666666778999999999999999999999
Q ss_pred HHHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHh
Q psy382 481 KFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDV 522 (536)
Q Consensus 481 ~f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~ 522 (536)
+|++||+||||||||+++||||+||.||+++|++|+++|+++
T Consensus 393 ~f~~mf~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 393 KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred HHHHHHhhcchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999873
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=2.7e-86 Score=703.11 Aligned_cols=366 Identities=27% Similarity=0.486 Sum_probs=334.1
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC--CcCCCCCccccccCCCCccccEEEEeCCccccccccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSL 227 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~--~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~ 227 (536)
|+|||+||+||||||||.+||+++++||+++++|.+... ..++..++||+|.++++|+||||||||||+||++++.+
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~- 80 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNS- 80 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccC-
Confidence 699999999999999999999999999999999876432 22467899999999999999999999999999999888
Q ss_pred cccccccCCCCCCCCCceecCCC--CccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHH
Q psy382 228 LSDQLQHQRPNLFNPDQLIAGKE--DAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPT 296 (536)
Q Consensus 228 ~~~~~~~~~~~~f~~~n~i~~~~--gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ 296 (536)
+++++|++++++++++ |||||||+||+ .|+++.|+++|+|||++|+||++|||++ ||+||+
T Consensus 81 -------~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~ 152 (454)
T PLN00222 81 -------EYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSY 152 (454)
T ss_pred -------ccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHH
Confidence 7788999999999996 69999999955 7999999999999999999999999999 999999
Q ss_pred HHHhh--------------------------------------------------------h-hhcCCCCCChhhHHHHH
Q psy382 297 LFRNR--------------------------------------------------------E-VTCVIERPAYQNLNHLT 319 (536)
Q Consensus 297 llE~~--------------------------------------------------------~-~~l~i~~~s~~~lN~lI 319 (536)
|+|.+ | +++++++|+|.+||++|
T Consensus 153 lle~L~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lI 232 (454)
T PLN00222 153 LLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLV 232 (454)
T ss_pred HHHHHHhhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHh
Confidence 99211 1 67889999999999999
Q ss_pred HHHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCC-cccccccCHHHHHHhhcCCCCceeeccCCC-
Q psy382 320 SQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCT-KTIHENLGVAEMTAECFHPGNQLVKCNVTN- 397 (536)
Q Consensus 320 A~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~-~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~- 397 (536)
|++|+++|+++||||.+|+||++|++||||||++||++++++|+.... ...++..++.++++++|+++++|+.++|+.
T Consensus 233 A~~ls~~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~ 312 (454)
T PLN00222 233 STVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTK 312 (454)
T ss_pred ccccCCcccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccc
Confidence 999999999999999999999999999999999999999999997652 345678899999999999999999999887
Q ss_pred ----CceeeeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHH
Q psy382 398 ----HKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMA 472 (536)
Q Consensus 398 ----~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~ 472 (536)
++|||+++++||++.++++.+++.+++.++ +.|++|+|+++++++|.++|...+ +.++++++|+|+|+|.
T Consensus 313 ~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~-----~~~~s~~~lsNst~I~ 387 (454)
T PLN00222 313 EASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQT-----AHRVSGLMLANHTSIR 387 (454)
T ss_pred cccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCC-----CCceEEEEEeCCHHHH
Confidence 999999999999999999999999998887 999999999999999998775322 2457899999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhhhccCCCC----hhhHHHHHHHHHHHHHHHHHhhcccccc
Q psy382 473 EAWSKLNKKFELMFEKRAFVHWYLSEGME----EDDFIDARDNLLQLELDYIDVATDTADE 529 (536)
Q Consensus 473 ~~l~~l~~~f~~m~~kkAflH~Y~~~Gme----e~eF~Ea~~~l~~li~~Y~~~~~~~~~~ 529 (536)
.+|+++.++|++||+||||||||+++||+ ++||.||+++|++|+++|++++..++.|
T Consensus 388 ~~f~~i~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 388 HLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYIK 448 (454)
T ss_pred HHHHHHHHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999993 8999999999999999999987555544
No 8
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=2.8e-86 Score=705.37 Aligned_cols=360 Identities=32% Similarity=0.635 Sum_probs=334.4
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC--CcCCCCCccccccCCCCccccEEEEeCCccccccccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSL 227 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~--~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~ 227 (536)
|+|||+||+||||||||.+||+++++||+++++|.+... ...+..++||+|.++++|+||||||||||+||++++.+
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~- 79 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSG- 79 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcC-
Confidence 899999999999999999999999999999988865432 12356789999999999999999999999999999988
Q ss_pred cccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHH
Q psy382 228 LSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLF 298 (536)
Q Consensus 228 ~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ll 298 (536)
+++++|++++++++++|||||||+|||++|+++.|+++|+|||++|+||+||||++ ||+||+|+
T Consensus 80 -------~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~ 152 (447)
T PLN00220 80 -------PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (447)
T ss_pred -------ccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999 99999998
Q ss_pred Hhh-------------------------------------------------------h-hhcCCCCCChhhHHHHHHHH
Q psy382 299 RNR-------------------------------------------------------E-VTCVIERPAYQNLNHLTSQV 322 (536)
Q Consensus 299 E~~-------------------------------------------------------~-~~l~i~~~s~~~lN~lIA~~ 322 (536)
|.+ | +.+++.+|+|.++|++||++
T Consensus 153 ~~l~~~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~ 232 (447)
T PLN00220 153 SKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISAT 232 (447)
T ss_pred HHHHHhccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhcc
Confidence 211 1 45788899999999999999
Q ss_pred hhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceee
Q psy382 323 MSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMA 402 (536)
Q Consensus 323 lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls 402 (536)
++++|+++||||.++.+++++++||||+|++||+.++++|+.+.....+++++|.+|++++|++++++++++|.+++|||
T Consensus 233 is~it~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la 312 (447)
T PLN00220 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLT 312 (447)
T ss_pred ccccchhhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHH
Confidence 99999999999999999999999999999999999999999887666678899999999999999999999999999999
Q ss_pred eeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHHH
Q psy382 403 CCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKK 481 (536)
Q Consensus 403 ~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~ 481 (536)
+++++||++.+.++...+.+++.++ +.|++|+|+++++++|+++|. +.++++++|+|+|+|..+|+++.++
T Consensus 313 ~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~~~~i~~~ 384 (447)
T PLN00220 313 ASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQ 384 (447)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCC--------CcceeeEEecCchHHHHHHHHHHHH
Confidence 9999999999999999999887776 999999999999999988774 2467999999999999999999999
Q ss_pred HHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhhcc
Q psy382 482 FELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATD 525 (536)
Q Consensus 482 f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~ 525 (536)
|++||+||||||||+++|||++||.||+++|++|+++|+++..+
T Consensus 385 f~~m~~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred HHHHHhcCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988643
No 9
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=4.8e-85 Score=693.81 Aligned_cols=351 Identities=29% Similarity=0.557 Sum_probs=323.9
Q ss_pred ccccceecccccccccchhhhhhhhhhcC-CCCCCCcccCCcCCCCCccccccC-----CC--CccccEEEEeCCccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHG-LSPIGEQLQPIRDDKVSSFFTEMN-----AT--KFTPRAIMVDLEPTVTG 221 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~-~~~~g~~~~~~~~~~~~~fF~e~~-----~~--~~~pRailiDlEp~vi~ 221 (536)
|+|||+||+||||||||.+||+++++||+ ++++|.. ++..++||+|.+ ++ +|+||||||||||+||+
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-----~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~ 75 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-----DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLN 75 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-----cccccceecccccccccCCCccccCcccccCCCccHHH
Confidence 79999999999999999999999999999 7887743 567889999632 23 49999999999999999
Q ss_pred cccccccccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cc
Q psy382 222 SGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SG 292 (536)
Q Consensus 222 ~i~~~~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SG 292 (536)
+++.+ +++++|++++++++++|||||||+|||..|+++.|+++|+|||++|+||+||||++ ||
T Consensus 76 ~i~~~--------~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSG 147 (465)
T PTZ00387 76 QILKS--------PLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSG 147 (465)
T ss_pred HhhcC--------CcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchh
Confidence 99988 77889999999999999999999999999999999999999999999999999999 89
Q ss_pred hhHHHHHhh------------------------------------------------------h-hhcCCCC--------
Q psy382 293 LSPTLFRNR------------------------------------------------------E-VTCVIER-------- 309 (536)
Q Consensus 293 lGS~llE~~------------------------------------------------------~-~~l~i~~-------- 309 (536)
+|++|+|.+ | +.++++.
T Consensus 148 lgs~lle~l~d~y~~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~ 227 (465)
T PTZ00387 148 LGTRILGMLEDEFPHVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNI 227 (465)
T ss_pred HHHHHHHHHHHhcccCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccccc
Confidence 999999321 1 3455543
Q ss_pred -------------------CChhhHHHHHHHHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCccc
Q psy382 310 -------------------PAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTI 370 (536)
Q Consensus 310 -------------------~s~~~lN~lIA~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~ 370 (536)
++|.+||++||++|+++|+++||||++|.|+++|.+||||||++||++++++|+.+.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~ 307 (465)
T PTZ00387 228 KRGPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVA 307 (465)
T ss_pred cccccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcc
Confidence 8899999999999999999999999999999999999999999999999999998876667
Q ss_pred ccccCHHHHHHhhcCCCCceeeccCCCCceeeeeecccCCCChHHHHHHHHhhcccccccccCCCCCceEEeccCCCccc
Q psy382 371 HENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVI 450 (536)
Q Consensus 371 ~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~f~~W~p~~~k~~~~~~~~~~~ 450 (536)
+...+|.+|++++|++.++|+.++|..++|||+++++||+..+.++.+.+.+++.+ +.|++|+|+++++++|.++|..
T Consensus 308 ~~~~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~~-~~f~~W~p~~~~~~~~~~~~~~- 385 (465)
T PTZ00387 308 VGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQ-LNMIYWNEDGFKTGLCNVSPLG- 385 (465)
T ss_pred cccCCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhcc-ccccccCCCceEEEeeccCCCC-
Confidence 78899999999999999999999999999999999999999999999999988754 8999999999999999987742
Q ss_pred CCCCCCCCcceeeeecCchHHHHHHHHHHHHHHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy382 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVA 523 (536)
Q Consensus 451 ~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~ 523 (536)
.++++++|+|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++|+++|+++.
T Consensus 386 -------~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~ 450 (465)
T PTZ00387 386 -------QPYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQ 450 (465)
T ss_pred -------CceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999999 89999999999999999999999996
No 10
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=2.5e-84 Score=686.29 Aligned_cols=356 Identities=35% Similarity=0.669 Sum_probs=331.1
Q ss_pred cccceecccccccccchhhhhhhhhhcCCCCCCCcccC--CcCCCCCccccccCCCCccccEEEEeCCcccccccccccc
Q psy382 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLL 228 (536)
Q Consensus 151 ~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~--~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~ 228 (536)
+|+|+||+||||||||.+||+++++||+++++|..... ...+..++||+|.++++|+||||+||+||++|++++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~-- 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG-- 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcC--
Confidence 68999999999999999999999999999998865322 12356789999999999999999999999999999887
Q ss_pred ccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHHH
Q psy382 229 SDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLFR 299 (536)
Q Consensus 229 ~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE 299 (536)
+++.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||++ ||+||+|+|
T Consensus 79 ------~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e 152 (425)
T cd02187 79 ------PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLIS 152 (425)
T ss_pred ------cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999 899999983
Q ss_pred hh-------------------------------------------------------h-hhcCCCCCChhhHHHHHHHHh
Q psy382 300 NR-------------------------------------------------------E-VTCVIERPAYQNLNHLTSQVM 323 (536)
Q Consensus 300 ~~-------------------------------------------------------~-~~l~i~~~s~~~lN~lIA~~l 323 (536)
.+ | +.+++..|+|.+||++||++|
T Consensus 153 ~l~d~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~i 232 (425)
T cd02187 153 KIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVM 232 (425)
T ss_pred HHHHhcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccc
Confidence 21 1 457788999999999999999
Q ss_pred hhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceeee
Q psy382 324 SSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMAC 403 (536)
Q Consensus 324 ss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls~ 403 (536)
+++|+++||||++|.||++|++||||||++||++++++|+++.....++.+++.+|++++|+++++|+.++|+.++|||+
T Consensus 233 s~~t~s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~ 312 (425)
T cd02187 233 SGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTA 312 (425)
T ss_pred cccceeeecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHH
Confidence 99999999999999999999999999999999999999999876667788999999999999999999999999999999
Q ss_pred eecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHHHH
Q psy382 404 CLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKF 482 (536)
Q Consensus 404 ~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~f 482 (536)
++++||++.+.++.+.+.+++.++ +.|++|+|+++++++|+.+|. +.++++++|+|+|+|..+|+++.++|
T Consensus 313 ~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~~~~i~~~f 384 (425)
T cd02187 313 AAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQF 384 (425)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCC--------CcceeEEEecCCcHHHHHHHHHHHHH
Confidence 999999999999999999998777 999999999999999987663 25679999999999999999999999
Q ss_pred HHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHh
Q psy382 483 ELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDV 522 (536)
Q Consensus 483 ~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~ 522 (536)
++||+||||||||+++||||+||.||+++|++|+++|+++
T Consensus 385 ~~m~~kkAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 385 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred HHHHhcCcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999986
No 11
>KOG1374|consensus
Probab=100.00 E-value=4.4e-82 Score=622.19 Aligned_cols=363 Identities=28% Similarity=0.527 Sum_probs=333.8
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC--CcCCCCCccccccCCCCccccEEEEeCCccccccccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSL 227 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~--~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~ 227 (536)
++||||||+||||||||.+||++||.||||.++|..... +..++.++||+|.+++.|+||||||||||+||+.+.++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~- 80 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSS- 80 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccc-
Confidence 689999999999999999999999999999999987654 45689999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCceecCC--CCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHH
Q psy382 228 LSDQLQHQRPNLFNPDQLIAGK--EDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPT 296 (536)
Q Consensus 228 ~~~~~~~~~~~~f~~~n~i~~~--~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ 296 (536)
+++++|+++|++..+ .|||||||.|| .+|+++.|+|||.|+||+|.||+|+||++ ||+||+
T Consensus 81 -------~~s~l~n~eni~~s~~ggGAGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~ 152 (448)
T KOG1374|consen 81 -------PYSGLYNPENIFLSDHGGGAGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSF 152 (448)
T ss_pred -------hhhcccCccceEEecCCCCccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHH
Confidence 889999999998865 57999999995 56999999999999999999999999999 999999
Q ss_pred HHHhh-------------------------------------------h--------------hhcCCCCCChhhHHHHH
Q psy382 297 LFRNR-------------------------------------------E--------------VTCVIERPAYQNLNHLT 319 (536)
Q Consensus 297 llE~~-------------------------------------------~--------------~~l~i~~~s~~~lN~lI 319 (536)
|+|++ | +.+.+++|+|.++|++|
T Consensus 153 llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLv 232 (448)
T KOG1374|consen 153 LLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLV 232 (448)
T ss_pred HHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99332 0 78889999999999999
Q ss_pred HHHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCccc--ccccCHHHHHHhhcCCCCceeeccC--
Q psy382 320 SQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTI--HENLGVAEMTAECFHPGNQLVKCNV-- 395 (536)
Q Consensus 320 A~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~--~~~~t~~~l~~~~f~~~n~~~~~~~-- 395 (536)
|++|++.|.++||||+++++|..|...|||+|++|||.++|+|++...... +.+.++.+.++.++.++++|+...+
T Consensus 233 stims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~ 312 (448)
T KOG1374|consen 233 STIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDL 312 (448)
T ss_pred HHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccc
Confidence 999999999999999999999999999999999999999999999865443 4788999999999999999998776
Q ss_pred -CCCceeeeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHH
Q psy382 396 -TNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAE 473 (536)
Q Consensus 396 -~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~ 473 (536)
....+++...++.|.+.+..+.+.+.+++.++ ..|++|.|.++.+++....|...+. ++.|+.+|+|+|+|..
T Consensus 313 ~~~~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~i~~ 387 (448)
T KOG1374|consen 313 SGNPCYISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTSIVS 387 (448)
T ss_pred cCCcchHhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchhHHH
Confidence 23478899999999999999999999999888 9999999999999988877765443 6779999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhhhccCCCChh---hHHHHHHHHHHHHHHHHHhhccc
Q psy382 474 AWSKLNKKFELMFEKRAFVHWYLSEGMEED---DFIDARDNLLQLELDYIDVATDT 526 (536)
Q Consensus 474 ~l~~l~~~f~~m~~kkAflH~Y~~~Gmee~---eF~Ea~~~l~~li~~Y~~~~~~~ 526 (536)
+|++++.+||+|++||||||+|.++||+++ ||.|+++.+++|+++|..++++.
T Consensus 388 lfe~~~~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~~ 443 (448)
T KOG1374|consen 388 LFERILGQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQPD 443 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999998 99999999999999999986543
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=4.4e-79 Score=649.37 Aligned_cols=350 Identities=23% Similarity=0.358 Sum_probs=311.9
Q ss_pred cceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCcccccccccccccccc
Q psy382 153 CLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQL 232 (536)
Q Consensus 153 ~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~~ 232 (536)
||+||+||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||||||||||+||++++++..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~--~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~---- 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK--YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS---- 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc--ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC----
Confidence 7999999999999999999999999999887653 2356789999999999999999999999999999998610
Q ss_pred ccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHHHhh--
Q psy382 233 QHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLFRNR-- 301 (536)
Q Consensus 233 ~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE~~-- 301 (536)
..+|+|++++++++++|||||||+|||..|+++.|+++|+|||++|+||+++||++ ||+|++|+|.+
T Consensus 76 --~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d 153 (446)
T cd02189 76 --GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRD 153 (446)
T ss_pred --CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHH
Confidence 23489999999999999999999999999999999999999999999999999999 89999999211
Q ss_pred ----------------------------------------------------h-hhcCCCCCChhhHHHHHHHHhhhccc
Q psy382 302 ----------------------------------------------------E-VTCVIERPAYQNLNHLTSQVMSSITA 328 (536)
Q Consensus 302 ----------------------------------------------------~-~~l~i~~~s~~~lN~lIA~~lss~t~ 328 (536)
| +.++++.|+|.+||++||++|+++|+
T Consensus 154 ~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~ 233 (446)
T cd02189 154 EYPESLLLNIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQ 233 (446)
T ss_pred hcCccceeeeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 56788899999999999999999999
Q ss_pred cccc-C-------CCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhc---CCCCceee-----
Q psy382 329 SLRF-E-------GALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECF---HPGNQLVK----- 392 (536)
Q Consensus 329 ~~Rf-~-------g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f---~~~n~~~~----- 392 (536)
|+|| + |.++.++++|+++|||+|++||++++++|+++.....++.++|.+|++.++ .+.+.+..
T Consensus 234 ~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~ 313 (446)
T cd02189 234 PSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWT 313 (446)
T ss_pred HhhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhccccccccccccc
Confidence 9987 5 346999999999999999999999999999987777788899999999876 55565544
Q ss_pred --------------ccCCCCceeeeeecccCCCChHHHHHHHHhhcccccccccCCCCCceEEeccCCCcccCCCCCCCC
Q psy382 393 --------------CNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPS 458 (536)
Q Consensus 393 --------------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~ 458 (536)
++++.++|+|+++++||+...+++...+ + +.+.|++|+|++++++++..+|.. .+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~---~-~~~~f~~W~p~~~~~~~~~~~~~~------~~~ 383 (446)
T cd02189 314 VRPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF---R-DPLLYVNWSPSPVRFSISSHKRSF------SKY 383 (446)
T ss_pred cccccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH---h-ccCcCCCcCCCCEeeeecCCCCCc------CCc
Confidence 4577899999999999998887776543 2 228899999999999999887642 135
Q ss_pred cceeeeecCchHHHHHHHHHHHHHHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHH
Q psy382 459 NKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYI 520 (536)
Q Consensus 459 ~~s~~~l~Nst~i~~~l~~l~~~f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~ 520 (536)
++++++++|+|+|..+|+++++||++||+||||||||+++||||+||.||+++|++|+++|+
T Consensus 384 ~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 384 EKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred ceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.4e-78 Score=632.97 Aligned_cols=325 Identities=31% Similarity=0.603 Sum_probs=302.9
Q ss_pred cccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCcccccccccccccc
Q psy382 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSD 230 (536)
Q Consensus 151 ~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~ 230 (536)
+|+|+||+||||||||.+||+++++|| |+||||+||+||++|++++.+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh----------------------------~~pR~v~iD~e~~~i~~i~~~---- 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH----------------------------LKARAVLIDMEEGVVNEILKG---- 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh----------------------------cCCcceeccCChhHHHHHhcC----
Confidence 689999999999999999999999999 589999999999999999988
Q ss_pred ccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHHHhh
Q psy382 231 QLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLFRNR 301 (536)
Q Consensus 231 ~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE~~ 301 (536)
+++++|++++++.+++|+|||||+|||..|+++.|+++|+|||++|+||+||||++ ||+|++|+|.+
T Consensus 49 ----~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l 124 (379)
T cd02190 49 ----PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELL 124 (379)
T ss_pred ----ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999 89999999543
Q ss_pred -h--------------------------------------------hhcCCCCCChhhHHHHHHHHhhhcccccccCCCC
Q psy382 302 -E--------------------------------------------VTCVIERPAYQNLNHLTSQVMSSITASLRFEGAL 336 (536)
Q Consensus 302 -~--------------------------------------------~~l~i~~~s~~~lN~lIA~~lss~t~~~Rf~g~~ 336 (536)
. .+-.+. +|.++|++||++|+++|+++||||.+
T Consensus 125 ~~~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~--~~~~~N~~ia~~i~~~t~~~rf~g~~ 202 (379)
T cd02190 125 ADEFPEVYRFVTSVYPSADDDVITSPYNSVLALRELIEHADCVLPIENQALV--PFDAMNSIVANLLLNLTSSMRFEGSL 202 (379)
T ss_pred HHhcCccceEEEeecCCCCCCceecccHHHHHHHHHHHhCCeeEEeccHHHH--HHHHHHHHHHhhhcCccceeeccccc
Confidence 0 111111 79999999999999999999999999
Q ss_pred CCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceeeeeecccCCCChHHH
Q psy382 337 NVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEV 416 (536)
Q Consensus 337 n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~ 416 (536)
|.|++++.+||||||++||++++++|+++.....++..++.+|++++|++.++|+.++|+.++|+|+++++||+..+.++
T Consensus 203 n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~~~~ei 282 (379)
T cd02190 203 NVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNVSVSDL 282 (379)
T ss_pred ccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999998766677889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHHHHHHHhhcccchhhhc
Q psy382 417 NYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYL 496 (536)
Q Consensus 417 ~~~~~~~~~~~~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~f~~m~~kkAflH~Y~ 496 (536)
.+.+.+++.+ ..|++|+|+++++++|..+|. +.++++++++|+|+|..+|+++.++|++||+||||||||+
T Consensus 283 ~~~~~~l~~~-~~fv~W~p~~~~~~~~~~~~~--------~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~ 353 (379)
T cd02190 283 RRNIERLKPK-LKFVKWNQEGWKIGLCSVPPV--------GHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYT 353 (379)
T ss_pred HHHHHHHhcc-CcCcCcCCCcEEEeecccCCC--------CcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 9999988766 789999999999999988763 2467999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHh
Q psy382 497 SEGMEEDDFIDARDNLLQLELDYIDV 522 (536)
Q Consensus 497 ~~Gmee~eF~Ea~~~l~~li~~Y~~~ 522 (536)
++||||+||.||+++|++|+++|+++
T Consensus 354 ~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 354 QVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999874
No 14
>KOG1376|consensus
Probab=100.00 E-value=2e-76 Score=580.74 Aligned_cols=336 Identities=56% Similarity=0.972 Sum_probs=319.1
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC----CcCCCCCccccccCCCCccccEEEEeCCccccccccc
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP----IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLT 225 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~----~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~ 225 (536)
|+|+|++|+||+|.|||+++|+++|.||+|.++|.++.+ ..++.++.||.++..++++||++|||+||. |++++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 799999999999999999999999999999999988764 235578899999999999999999999999 999999
Q ss_pred cccccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHH
Q psy382 226 SLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPT 296 (536)
Q Consensus 226 ~~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ 296 (536)
| +|+.+|+|++++++|++++||+|||||+.|+|++|.++++||+.++.|..||||++ ||++|.
T Consensus 80 G--------~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~ 151 (407)
T KOG1376|consen 80 G--------TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSL 151 (407)
T ss_pred c--------chhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccch
Confidence 9 99999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHh-----------------------------------------h--------------h-hhcCCCCCChhhHHHHHH
Q psy382 297 LFRN-----------------------------------------R--------------E-VTCVIERPAYQNLNHLTS 320 (536)
Q Consensus 297 llE~-----------------------------------------~--------------~-~~l~i~~~s~~~lN~lIA 320 (536)
++|. + | +++++.+|+|.++|++|+
T Consensus 152 lmerls~~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~ 231 (407)
T KOG1376|consen 152 LMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIA 231 (407)
T ss_pred hhhhhhhhhhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHH
Confidence 9921 1 1 688999999999999999
Q ss_pred HHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCce
Q psy382 321 QVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKY 400 (536)
Q Consensus 321 ~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ 400 (536)
|+++++|+++||.|.+|.||.++++||||+| + |+|+.+..+..+++.++.+++.++|++.|+|++|||++|+|
T Consensus 232 qVvSsitaSlrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gky 304 (407)
T KOG1376|consen 232 QVVSSITASLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY 304 (407)
T ss_pred hhhcccccccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchH
Confidence 9999999999999999999999999999999 2 99999999999999999999999999999999999999999
Q ss_pred eeeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHH
Q psy382 401 MACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLN 479 (536)
Q Consensus 401 ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~ 479 (536)
+++++++||++.|+++..++..+|.++ ++|++ ..+|++++++.+|..|+|+|+|+|++.|.++.
T Consensus 305 ma~cllyrgdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lakv~Ravcmlsnttai~eawarld 369 (407)
T KOG1376|consen 305 MACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLD 369 (407)
T ss_pred HHHHHhccCCcCcccchHHHHhhhhccccccce---------------eeccCcchhhhceeeEecCCCcHHHHHHhhcc
Confidence 999999999999999999999999998 98987 24678889999999999999999999999999
Q ss_pred HHHHHHhhcccchhhhccCCCChhhHHHHHHHHHHHH
Q psy382 480 KKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLE 516 (536)
Q Consensus 480 ~~f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li 516 (536)
.||+.||.||||||||.++||||+||.||+++|..|+
T Consensus 370 ~kfdLmyakrafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 370 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred hhhhhhhcchheeeeccCCCccccchhhhhhhHHhhc
Confidence 9999999999999999999999999999999998875
No 15
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=2.1e-69 Score=567.57 Aligned_cols=316 Identities=42% Similarity=0.762 Sum_probs=293.7
Q ss_pred ccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCccccccccccccccc
Q psy382 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQ 231 (536)
Q Consensus 152 e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~ 231 (536)
|||+||+||||||||.+||+++ |+|||||++|++++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-------------------------------------i~iD~e~~~i~~i~~~----- 38 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-------------------------------------ILVDLDPRVINEILQG----- 38 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-------------------------------------HcccCCcchhhhhhcc-----
Confidence 7999999999999999999975 9999999999999988
Q ss_pred cccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHHHhh-
Q psy382 232 LQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLFRNR- 301 (536)
Q Consensus 232 ~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE~~- 301 (536)
+.+.+|++++++++++|+|||||+||+..|+++.|+++|+||+++|+||++|||++ ||+|++++|.+
T Consensus 39 ---~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~ 115 (382)
T cd06059 39 ---QLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLS 115 (382)
T ss_pred ---cccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999 89999998321
Q ss_pred ------------------------------------------------------h-hhcCCCCCChhhHHHHHHHHhhhc
Q psy382 302 ------------------------------------------------------E-VTCVIERPAYQNLNHLTSQVMSSI 326 (536)
Q Consensus 302 ------------------------------------------------------~-~~l~i~~~s~~~lN~lIA~~lss~ 326 (536)
| +.++++.++|.++|++||++|+++
T Consensus 116 d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~i 195 (382)
T cd06059 116 DEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSI 195 (382)
T ss_pred HhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccc
Confidence 0 345677899999999999999999
Q ss_pred ccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceeeeeec
Q psy382 327 TASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLL 406 (536)
Q Consensus 327 t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls~~~~ 406 (536)
|+++||||.+|.|+++++++|||||++||++++++|+++.....+...++.++++++|++.+++..++|+.++|++++++
T Consensus 196 t~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~ 275 (382)
T cd06059 196 TASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALI 275 (382)
T ss_pred ccccccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999876666788999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHHHHHHH
Q psy382 407 YRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485 (536)
Q Consensus 407 ~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~f~~m 485 (536)
+||+..+.++.+.+.+++.+. .. +|+|+++++++|+++|. .+.++++++|+|+|+|..+|+++.++|++|
T Consensus 276 ~RG~~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~-------~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m 346 (382)
T cd06059 276 FRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR-------AELGKSALFLSNSTSIGESLERLIEKFDKL 346 (382)
T ss_pred HhCCCCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCC-------cCcceeEEEecCchHHHHHHHHHHHHHHHH
Confidence 999999999999999888665 33 89999999999988774 135679999999999999999999999999
Q ss_pred hhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHH
Q psy382 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYID 521 (536)
Q Consensus 486 ~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~ 521 (536)
|+||||||||+++||||+||.||+++|++|+++|++
T Consensus 347 ~~~rAflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 347 YKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred HhhCcchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999974
No 16
>KOG1375|consensus
Probab=100.00 E-value=4.9e-50 Score=396.73 Aligned_cols=291 Identities=32% Similarity=0.627 Sum_probs=256.8
Q ss_pred CCCCCccccccCCCCccccEEEEeCCccccccccccccccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHH
Q psy382 191 DDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDK 270 (536)
Q Consensus 191 ~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~ 270 (536)
..+++++|.+...++|+||+|+|||||.++++++++ ++..+|+|++ +++| +|||+.|.++.|.
T Consensus 8 ~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~--------~~g~~frp~~---~~sg------~ghy~~ga~~~ds 70 (369)
T KOG1375|consen 8 LERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSG--------PFGQIFRPDN---GQSG------KGHYTEGAELVDS 70 (369)
T ss_pred eeeeeeeecccccccccchhheeeccCccccccccC--------ccceeccCcC---CccC------ccceeeeeeehhc
Confidence 456789999999999999999999999999999999 8889999999 5544 9999999988877
Q ss_pred HHHHHHhhhhcCCCCCceee---------cchhHHHHHhh---------h------------------------------
Q psy382 271 LTNTIRRIVENCDTFNGFLS---------SGLSPTLFRNR---------E------------------------------ 302 (536)
Q Consensus 271 i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE~~---------~------------------------------ 302 (536)
.||+||||++ ||+|+++++-. |
T Consensus 71 ----------~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~ksd~vvepyna~ls~~ql~en~ 140 (369)
T KOG1375|consen 71 ----------SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKSDTVVEPYNATLSVHQLVENA 140 (369)
T ss_pred ----------ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCcccccceecccccccchhhhhcCC
Confidence 8999999999 89999888211 0
Q ss_pred -hhcCCCCCChhhHHHHHHH--HhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHH
Q psy382 303 -VTCVIERPAYQNLNHLTSQ--VMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEM 379 (536)
Q Consensus 303 -~~l~i~~~s~~~lN~lIA~--~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l 379 (536)
..+-++++...++....-. .-.++|.++||||++|.+++++..|+||+|++||+.++++|++......+...+++++
T Consensus 141 ~et~cidNeal~dic~~~lkl~~~~g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~a~tv~el 220 (369)
T KOG1375|consen 141 DETFCIDNEALYDICFRTLKLKTPSGVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPEL 220 (369)
T ss_pred CcccccccHHHHHHHhhhhcccCCCCceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccccccccccc
Confidence 2223344444443332211 1125688999999999999999999999999999999999999998888999999999
Q ss_pred HHhhcCCCCceeeccCCCCceeeeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCC
Q psy382 380 TAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPS 458 (536)
Q Consensus 380 ~~~~f~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~ 458 (536)
+.++|+.+|+|..++ |++++.++|| +.++++++...+++|+ .+|++|+|+++|.++|..||.. .
T Consensus 221 tqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~g--------l 285 (369)
T KOG1375|consen 221 TQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGG--------L 285 (369)
T ss_pred ccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcc--------c
Confidence 999999999999887 9999999999 8999999999999998 9999999999999999998853 4
Q ss_pred cceeeeecCchHHHHHHHHHHHHHHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy382 459 NKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVA 523 (536)
Q Consensus 459 ~~s~~~l~Nst~i~~~l~~l~~~f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~ 523 (536)
+.+.+.++|+|+|...|+++.++|..||+||||||||+++||+|+||+||..++++||.+|+++.
T Consensus 286 kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~ 350 (369)
T KOG1375|consen 286 KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 350 (369)
T ss_pred cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999999999999999999999999999999999999999999999994
No 17
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.1e-48 Score=385.36 Aligned_cols=153 Identities=48% Similarity=0.836 Sum_probs=142.0
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccC--CcccccccccccccCCCcccceeeEecCCCCc--------
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQ--PIRDDKVSSFFTEMNATKFTPRAIMVDLEPTV-------- 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~--~~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v-------- 73 (536)
||||||||+||||||||++||+++|+||||+++|.+++ +.+.+++++||+|++.|+||||||+||+||.|
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 89999999999999999999999999999999999887 56679999999999999999999999999999
Q ss_pred -----------cccCCCc--------------------------------------------ccC-------------CC
Q psy382 74 -----------TGKSGGG--------------------------------------------RGR-------------KG 85 (536)
Q Consensus 74 -----------~~~~~~g--------------------------------------------tGs-------------y~ 85 (536)
++|+|+| ||| ||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 3344444 888 99
Q ss_pred Cccc------c-cccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCccccccccccccccccee
Q psy382 86 KRGR------E-RKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSL 156 (536)
Q Consensus 86 ~~~~------~-~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l 156 (536)
||++ | ++++++||||||++|++|.|+|++|+++|+||+||++||.+.|++.+|+|.++|++||+.+..+|-
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 9987 5 899999999999999999999999999999999999999999999999999999999998876553
No 18
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=2e-44 Score=371.95 Aligned_cols=263 Identities=36% Similarity=0.660 Sum_probs=236.2
Q ss_pred ccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCccccccccccccccc
Q psy382 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQ 231 (536)
Q Consensus 152 e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~ 231 (536)
||++||+||||||||.+||+++ |+||+||++++.++.+
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-------------------------------------v~idtd~~~l~~~~~~----- 38 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------VLVDTEPGVIDETLSG----- 38 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-------------------------------------heecCCHHHHHHHhCc-----
Confidence 7899999999999999999863 9999999999999887
Q ss_pred cccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHHHhh-
Q psy382 232 LQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLFRNR- 301 (536)
Q Consensus 232 ~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE~~- 301 (536)
+...+|++.+.+++++|+||||++||+..|+++.|+++|+||+++|+||++|||++ ||+|++++|.+
T Consensus 39 ---~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~ 115 (328)
T cd00286 39 ---PYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLK 115 (328)
T ss_pred ---ccccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHH
Confidence 66778999999999999999999999999999999999999999999999999999 89999998221
Q ss_pred -----------------------------------------------------h-hhcCCCCCChhhHHHHHHHHhhhcc
Q psy382 302 -----------------------------------------------------E-VTCVIERPAYQNLNHLTSQVMSSIT 327 (536)
Q Consensus 302 -----------------------------------------------------~-~~l~i~~~s~~~lN~lIA~~lss~t 327 (536)
| +.+++..++|.++|++||++|+++|
T Consensus 116 d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 195 (328)
T cd00286 116 DEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLT 195 (328)
T ss_pred HHcCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccc
Confidence 0 2346778999999999999999999
Q ss_pred cccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceeeeeecc
Q psy382 328 ASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLY 407 (536)
Q Consensus 328 ~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls~~~~~ 407 (536)
+++||||.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++++.++++.+++..++++++++++
T Consensus 196 ~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (328)
T cd00286 196 TPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLV 275 (328)
T ss_pred cccccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHH
Confidence 99999999999999999999999999999999999987655566778999999999999999998899999999999999
Q ss_pred cCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCc
Q psy382 408 RGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNT 468 (536)
Q Consensus 408 RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Ns 468 (536)
||+...+++.+.+..++.+. +. +|+|++++++++..++. .+.+.++++|+|+
T Consensus 276 rG~~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~-------~~~~~~~~~l~Ns 328 (328)
T cd00286 276 RGPVSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPA-------SEHKVSALLLSNS 328 (328)
T ss_pred hCCCChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCC-------CCcCeEEEEeccC
Confidence 99999999999988887665 33 89999999999987653 0245689999986
No 19
>KOG1374|consensus
Probab=100.00 E-value=3.1e-43 Score=347.32 Aligned_cols=152 Identities=37% Similarity=0.629 Sum_probs=137.0
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccC--CcccccccccccccCCCcccceeeEecCCCCccc------
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQ--PIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTG------ 75 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~--~~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v~~------ 75 (536)
+|||||||+||||||||.+||+.+|+||||.++|.... +++.++.++||+|+++++|+|||||||+||+|+.
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 56999999999999999999999999999999999776 4667899999999999999999999999999911
Q ss_pred ---------------cCCCc-------------------------------------------ccC-------------C
Q psy382 76 ---------------KSGGG-------------------------------------------RGR-------------K 84 (536)
Q Consensus 76 ---------------~~~~g-------------------------------------------tGs-------------y 84 (536)
..|+| ||| |
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dry 161 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRY 161 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhc
Confidence 11222 777 9
Q ss_pred CCccc------ccc--cccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccce
Q psy382 85 GKRGR------ERK--ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLS 155 (536)
Q Consensus 85 ~~~~~------~~~--~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~ 155 (536)
|||.+ |.+ ++++||||||++|+|++|+|++|+++++||.||.+||.+.+.+.+|+|+++|++||..+...+
T Consensus 162 pkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 162 PKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred hhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 99987 666 899999999999999999999999999999999999999999999999999999998766443
No 20
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=2e-37 Score=329.52 Aligned_cols=155 Identities=35% Similarity=0.586 Sum_probs=137.3
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCC--cccccccccccccCCCcccceeeEecCCCCc--------
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTV-------- 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~--~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v-------- 73 (536)
|||||+|||||||||||.+||+++++||+++++|.+.+. ...+.+++||+|+.+++|+|||||||+||+|
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 799999999999999999999999999999999987442 2346789999999999999999999999998
Q ss_pred -----------cccC--CCc-------------------------------------------ccC-------------C
Q psy382 74 -----------TGKS--GGG-------------------------------------------RGR-------------K 84 (536)
Q Consensus 74 -----------~~~~--~~g-------------------------------------------tGs-------------y 84 (536)
.+++ |+| ||| |
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y 161 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRY 161 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHHHHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhhc
Confidence 2332 233 887 9
Q ss_pred CCccc------cc--ccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCccccccccccccccccee
Q psy382 85 GKRGR------ER--KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSL 156 (536)
Q Consensus 85 ~~~~~------~~--~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l 156 (536)
|++.+ |. ..+++||+|||++|+|++|++++|++++|||+||+++|.++++++.|+|.|||++||+....++-
T Consensus 162 ~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T~ 241 (454)
T PLN00222 162 SKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSASTT 241 (454)
T ss_pred CCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCccc
Confidence 98865 53 36789999999999999999999999999999999999999999999999999999999888875
Q ss_pred cc
Q psy382 157 HI 158 (536)
Q Consensus 157 ~~ 158 (536)
.+
T Consensus 242 s~ 243 (454)
T PLN00222 242 TL 243 (454)
T ss_pred cc
Confidence 44
No 21
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.1e-37 Score=331.53 Aligned_cols=154 Identities=51% Similarity=0.914 Sum_probs=136.5
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCC----cccccccccccccCCCcccceeeEecCCCCc------
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP----IRDDKVSSFFTEMNATKFTPRAIMVDLEPTV------ 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~----~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v------ 73 (536)
|||||+|||||||||||.+||+++|+||+++++|.+.+. ...+++++||+|+.+++|+|||||||+||+|
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 899999999999999999999999999999999976442 1346789999999999999999999999998
Q ss_pred -------------cccCCCc--------------------------------------------ccC-------------
Q psy382 74 -------------TGKSGGG--------------------------------------------RGR------------- 83 (536)
Q Consensus 74 -------------~~~~~~g--------------------------------------------tGs------------- 83 (536)
.+++|+| |||
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 1233333 777
Q ss_pred CCCccc------cc-ccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCccccccccccccccccee
Q psy382 84 KGKRGR------ER-KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSL 156 (536)
Q Consensus 84 y~~~~~------~~-~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l 156 (536)
||++.+ |. +.+++||||||++|++++|+|++|++++|||+||+++|.+.++++.|+|.|||++||+.+..++-
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 999876 43 46899999999999999999999999999999999999999999999999999999998887774
Q ss_pred c
Q psy382 157 H 157 (536)
Q Consensus 157 ~ 157 (536)
.
T Consensus 241 s 241 (450)
T PLN00221 241 S 241 (450)
T ss_pred c
Confidence 3
No 22
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.3e-36 Score=320.03 Aligned_cols=153 Identities=50% Similarity=0.910 Sum_probs=135.5
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCC----cccccccccccccCCCcccceeeEecCCCCc------
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP----IRDDKVSSFFTEMNATKFTPRAIMVDLEPTV------ 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~----~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v------ 73 (536)
|||||+||+||||||||.+||+++|+||+++++|.+... ...+++++||+|+.+++|+|||||||+||+|
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 899999999999999999999999999999999976432 1346789999999999999999999999998
Q ss_pred -------------cccCCCc--------------------------------------------ccC-------------
Q psy382 74 -------------TGKSGGG--------------------------------------------RGR------------- 83 (536)
Q Consensus 74 -------------~~~~~~g--------------------------------------------tGs------------- 83 (536)
.+++|+| |||
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 1222333 888
Q ss_pred CCCccc------cc-ccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCccccccccccccccccee
Q psy382 84 KGKRGR------ER-KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSL 156 (536)
Q Consensus 84 y~~~~~------~~-~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l 156 (536)
||++.+ |. +.++++|+|||++|+|++|+|++|++++|||+||+++|.+.+++..|+|.+||++||+....++-
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 998876 54 46799999999999999999999999999999999999999999999999999999998876663
No 23
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.3e-35 Score=313.91 Aligned_cols=167 Identities=36% Similarity=0.595 Sum_probs=141.9
Q ss_pred ceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCC--cccccccccccccCCCcccceeeEecCCCCc---------
Q psy382 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTV--------- 73 (536)
Q Consensus 5 ~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~--~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v--------- 73 (536)
||||+|||||||||||.+||+++++||+++++|.+.+. ...+.+++||+|+.+++|+|||||||+||+|
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 69999999999999999999999999999999987552 2356789999999999999999999999998
Q ss_pred ----------cccC--CCc-------------------------------------------ccC-------------CC
Q psy382 74 ----------TGKS--GGG-------------------------------------------RGR-------------KG 85 (536)
Q Consensus 74 ----------~~~~--~~g-------------------------------------------tGs-------------y~ 85 (536)
.+++ |+| ||| ||
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~ 160 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYP 160 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcC
Confidence 2232 343 887 99
Q ss_pred Cccc------cccc--ccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccceec
Q psy382 86 KRGR------ERKI--STSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLH 157 (536)
Q Consensus 86 ~~~~------~~~~--~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l~ 157 (536)
++.+ |... ++++|||||++|+|++|+|++|++++|||+||+++|.+.++++.|+|.+||++||+....++.+
T Consensus 161 ~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~~ 240 (431)
T cd02188 161 KKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTTT 240 (431)
T ss_pred cceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCcccc
Confidence 8865 5332 5889999999999999999999999999999999999999999999999999999998888876
Q ss_pred ccccccccchhhhhh
Q psy382 158 IGQAGIQMGDSCWQL 172 (536)
Q Consensus 158 ~GqcGnqiG~~~w~~ 172 (536)
+-.=| ++...+|+.
T Consensus 241 ~Rf~g-~ln~dl~~i 254 (431)
T cd02188 241 LRYPG-YMNNDLISL 254 (431)
T ss_pred eecCC-ccCCCHHHH
Confidence 53322 234455554
No 24
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2.9e-35 Score=313.12 Aligned_cols=154 Identities=36% Similarity=0.683 Sum_probs=135.8
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCC--cccccccccccccCCCcccceeeEecCCCCc--------
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTV-------- 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~--~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v-------- 73 (536)
|||||+||+||||||||.+||+++++||+++++|.+... ...+.+++||+|+.+|+|+|||||||+||+|
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 899999999999999999999999999999999977542 2235778999999999999999999999998
Q ss_pred -----------cccCCC--------------------------------------------cccC-------------CC
Q psy382 74 -----------TGKSGG--------------------------------------------GRGR-------------KG 85 (536)
Q Consensus 74 -----------~~~~~~--------------------------------------------gtGs-------------y~ 85 (536)
.+++|+ |||| ||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 122233 3887 99
Q ss_pred Cccc------c-cccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccceec
Q psy382 86 KRGR------E-RKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLH 157 (536)
Q Consensus 86 ~~~~------~-~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l~ 157 (536)
++.+ | +..++++|||||++|++++|.+++|++++|||+||+++|++++++++|+|.+||++||+....++-.
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~ 239 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCC 239 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccc
Confidence 8865 4 3458899999999999999999999999999999999999999999999999999999988877743
No 25
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=5.2e-35 Score=311.92 Aligned_cols=152 Identities=37% Similarity=0.694 Sum_probs=134.9
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccC--CcccccccccccccCCCcccceeeEecCCCCc--------
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQ--PIRDDKVSSFFTEMNATKFTPRAIMVDLEPTV-------- 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~--~~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v-------- 73 (536)
|||||+||+||||||||.+||+++++||+++++|.+.. +...+.+++||+|+.+|+|+|||||||+||+|
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 89999999999999999999999999999999987754 22236788999999999999999999999998
Q ss_pred -----------cccCCCc--------------------------------------------ccC-------------CC
Q psy382 74 -----------TGKSGGG--------------------------------------------RGR-------------KG 85 (536)
Q Consensus 74 -----------~~~~~~g--------------------------------------------tGs-------------y~ 85 (536)
.+++|+| ||| ||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 2233333 888 99
Q ss_pred Cccc------c-cccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccce
Q psy382 86 KRGR------E-RKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLS 155 (536)
Q Consensus 86 ~~~~------~-~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~ 155 (536)
++.+ | +..++++|+|||++|+|++|+|++|++++|||+||+++|.+.++++.|+|.++|++||+....++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it 237 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccc
Confidence 8865 4 35789999999999999999999999999999999999999999999999999999998777665
No 26
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1e-34 Score=308.85 Aligned_cols=147 Identities=30% Similarity=0.552 Sum_probs=128.7
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhC-CCCCCcccCCcccccccccccccC-----CC--cccceeeEecCCCCc--
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHG-LSPIGEQLQPIRDDKVSSFFTEMN-----AT--KFTPRAIMVDLEPTV-- 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~-~~~~g~~~~~~~~~~~~~~f~e~~-----~~--~~~pRavlvD~ep~v-- 73 (536)
|||||+|||||||||||.+||+++|+||+ ++++|.+ ++++++||+|.+ .+ +|+|||||||+||+|
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-----~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~ 75 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-----DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLN 75 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-----cccccceecccccccccCCCccccCcccccCCCccHHH
Confidence 89999999999999999999999999999 7888865 467899999643 34 499999999999998
Q ss_pred -----------------cccCCCc--------------------------------------------ccC---------
Q psy382 74 -----------------TGKSGGG--------------------------------------------RGR--------- 83 (536)
Q Consensus 74 -----------------~~~~~~g--------------------------------------------tGs--------- 83 (536)
.+++|+| |||
T Consensus 76 ~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~ 155 (465)
T PTZ00387 76 QILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGM 155 (465)
T ss_pred HhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHH
Confidence 2233333 887
Q ss_pred ----CCCccc------ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCC----------------
Q psy382 84 ----KGKRGR------ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIER---------------- 137 (536)
Q Consensus 84 ----y~~~~~------~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~---------------- 137 (536)
||++.+ |...++++|+|||++|+|++|.|++|++++|||+||+++|.+.++++.
T Consensus 156 l~d~y~~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (465)
T PTZ00387 156 LEDEFPHVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHK 235 (465)
T ss_pred HHHhcccCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccccccccccccc
Confidence 998865 767789999999999999999999999999999999999999998874
Q ss_pred -----------Ccccccccccccccccce
Q psy382 138 -----------PAYQNLNHLTSQQRECLS 155 (536)
Q Consensus 138 -----------~~~~~~N~~ia~m~e~i~ 155 (536)
|+|.+||++||++...++
T Consensus 236 ~~~~~~~~~~~~~~~~~N~iIa~~l~~~t 264 (465)
T PTZ00387 236 YSVAKPTETKKLPYDKMNNIVAQLLSNLT 264 (465)
T ss_pred cccccccccccccHHHHHHHHHhhhcccc
Confidence 899999999999887666
No 27
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.1e-34 Score=306.02 Aligned_cols=152 Identities=53% Similarity=0.988 Sum_probs=134.0
Q ss_pred ceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCC----cccccccccccccCCCcccceeeEecCCCCc-------
Q psy382 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP----IRDDKVSSFFTEMNATKFTPRAIMVDLEPTV------- 73 (536)
Q Consensus 5 ~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~----~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v------- 73 (536)
||||+||+||||||||.+||+++++||+++++|.+.+. ...+.+++||+|+.+|+|+|||||||+||++
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999999976542 2346789999999999999999999999998
Q ss_pred ------------cccC--------------------------------------------CCcccC-------------C
Q psy382 74 ------------TGKS--------------------------------------------GGGRGR-------------K 84 (536)
Q Consensus 74 ------------~~~~--------------------------------------------~~gtGs-------------y 84 (536)
.+++ ++|||| |
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 1122 333888 9
Q ss_pred CCccc------cc-ccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCccccccccccccccccee
Q psy382 85 GKRGR------ER-KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSL 156 (536)
Q Consensus 85 ~~~~~------~~-~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l 156 (536)
|++.+ |. ..++++|+|||++|+|++|+|++|++++|||+||+++|.+.++++.|+|.+||++||+....++.
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~ 239 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccc
Confidence 98866 54 35689999999999999999999999999999999999999999999999999999998877664
No 28
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.98 E-value=9.6e-34 Score=301.89 Aligned_cols=149 Identities=23% Similarity=0.387 Sum_probs=132.9
Q ss_pred eEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCCcccccccccccccCCCcccceeeEecCCCCc-------------
Q psy382 7 CLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTV------------- 73 (536)
Q Consensus 7 ii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v------------- 73 (536)
||+|||||||||||.+||+++++||+++++|.+. ...+.+++||+|+.+++|+|||||||+||+|
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~--~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~ 79 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK--YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTW 79 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc--ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCccc
Confidence 8999999999999999999999999999988753 2356789999999999999999999999998
Q ss_pred --------cccCCCc--------------------------------------------ccC-------------CCCcc
Q psy382 74 --------TGKSGGG--------------------------------------------RGR-------------KGKRG 88 (536)
Q Consensus 74 --------~~~~~~g--------------------------------------------tGs-------------y~~~~ 88 (536)
.+++|+| ||| ||++.
T Consensus 80 ~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~ 159 (446)
T cd02189 80 KYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESL 159 (446)
T ss_pred ccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccc
Confidence 1222333 887 99886
Q ss_pred c------ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccceec
Q psy382 89 R------ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLH 157 (536)
Q Consensus 89 ~------~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l~ 157 (536)
+ |...++++|||||++|+|++|+|++|++++|||+||+++|.+.++++.|+|.++|++||+....++.+
T Consensus 160 ~~~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 160 LLNIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred eeeeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 5 76778999999999999999999999999999999999999999999999999999999987766654
No 29
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.98 E-value=1.8e-33 Score=298.26 Aligned_cols=153 Identities=40% Similarity=0.709 Sum_probs=133.7
Q ss_pred ceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCC--cccccccccccccCCCcccceeeEecCCCCc---------
Q psy382 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTV--------- 73 (536)
Q Consensus 5 ~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~--~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v--------- 73 (536)
||||+||+||||||||.+||+++++||+++++|.+.+. ...+.+++||+|+.+++|+||||+||+||++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 69999999999999999999999999999999876442 2236788999999999999999999999998
Q ss_pred ----------cccCCC--------------------------------------------cccC-------------CCC
Q psy382 74 ----------TGKSGG--------------------------------------------GRGR-------------KGK 86 (536)
Q Consensus 74 ----------~~~~~~--------------------------------------------gtGs-------------y~~ 86 (536)
.+++|+ |||| ||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 122233 2887 999
Q ss_pred ccc------ccc-cccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccceec
Q psy382 87 RGR------ERK-ISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLH 157 (536)
Q Consensus 87 ~~~------~~~-~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l~ 157 (536)
+.+ |.. .++++|+|||++|+|++|+|++|++++|||+||+++|.+++++..|+|.+||++||+....++-.
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence 866 543 45999999999999999999999999999999999999999999999999999999988777743
No 30
>KOG1376|consensus
Probab=99.97 E-value=9.2e-32 Score=265.52 Aligned_cols=152 Identities=52% Similarity=0.960 Sum_probs=135.9
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccC----CcccccccccccccCCCcccceeeEecCCCCc------
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQ----PIRDDKVSSFFTEMNATKFTPRAIMVDLEPTV------ 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~----~~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v------ 73 (536)
|||||+|||||+|.|||+++|+++|.||||+++|.++. ....+.+++||.++..++++||++|||+||.+
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPtidevrtG 80 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPTIDEVRTG 80 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCccchhccc
Confidence 89999999999999999999999999999999999887 22355789999999999999999999999993
Q ss_pred --------------------------------------------------------cccCCCcccC-------------C
Q psy382 74 --------------------------------------------------------TGKSGGGRGR-------------K 84 (536)
Q Consensus 74 --------------------------------------------------------~~~~~~gtGs-------------y 84 (536)
+...|+|||| |
T Consensus 81 ~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~ 160 (407)
T KOG1376|consen 81 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDY 160 (407)
T ss_pred chhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhhh
Confidence 1122444777 8
Q ss_pred CCccc-------ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccce
Q psy382 85 GKRGR-------ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLS 155 (536)
Q Consensus 85 ~~~~~-------~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~ 155 (536)
+|+.. .++.+.++++|||++|+.|...|++|+++++||+|+|++|+++++++.|+|+++|++|+|...-++
T Consensus 161 GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsit 238 (407)
T KOG1376|consen 161 GKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSIT 238 (407)
T ss_pred hhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhcccc
Confidence 88875 688999999999999999999999999999999999999999999999999999999998766444
No 31
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=99.97 E-value=9.3e-29 Score=263.45 Aligned_cols=356 Identities=17% Similarity=0.232 Sum_probs=234.9
Q ss_pred cccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccC----CCCccccEEEEeCCcccccccccc
Q psy382 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMN----ATKFTPRAIMVDLEPTVTGSGLTS 226 (536)
Q Consensus 151 ~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~----~~~~~pRailiDlEp~vi~~i~~~ 226 (536)
+|||+||+||++|.||++||+.....+...+++. ....+.+++|+++. ..+|+||+|++|+....-.--+.+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~----~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~~~ 76 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP----ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPEEG 76 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc----cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccccc
Confidence 6999999999999999999999877776666542 12456789999954 568999999999987654322222
Q ss_pred cccc----ccccCC----CCCCCCCceecCC-----CCccccccccccC---CCchHHHHHHHHHHhhhhcCCCCCceee
Q psy382 227 LLSD----QLQHQR----PNLFNPDQLIAGK-----EDAANNFARGRMT---CGKTIIDKLTNTIRRIVENCDTFNGFLS 290 (536)
Q Consensus 227 ~~~~----~~~~~~----~~~f~~~n~i~~~-----~gsgNnwa~Gy~~---~g~~~~e~i~d~IR~~vE~CD~lqGF~i 290 (536)
.++. ..+..| +-.|+|+++..-+ .+++++|+.|+-. .+.+..|+++|+||+++|+||+||||++
T Consensus 77 ~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi 156 (493)
T cd06060 77 SLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQV 156 (493)
T ss_pred CcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEE
Confidence 1110 000011 1248999887653 3667788887543 5667899999999999999999999999
Q ss_pred --------cchhHHHHHhh--------------------------------------------h---------h------
Q psy382 291 --------SGLSPTLFRNR--------------------------------------------E---------V------ 303 (536)
Q Consensus 291 --------SGlGS~llE~~--------------------------------------------~---------~------ 303 (536)
||+|++++|.+ + .
T Consensus 157 ~~sl~gG~sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~ 236 (493)
T cd06060 157 LCDLHDGFSGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKP 236 (493)
T ss_pred EEecCCcccchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCC
Confidence 99999999432 0 0
Q ss_pred -------hcCCCCCChhhHHHHHHHHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccc-cccCCCcccccccC
Q psy382 304 -------TCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFS-PISTCTKTIHENLG 375 (536)
Q Consensus 304 -------~l~i~~~s~~~lN~lIA~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~-P~~~~~~~~~~~~t 375 (536)
.+.++..+..+--.++|.+|.++|.|+|..+.. .+|.+|..+|.+. ..|+..++.+ |+-.. ...+
T Consensus 237 ~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~-gRki~~~~~a~P~p~~-----~~~~ 309 (493)
T cd06060 237 GPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFS-GRKVVAAGLALPFPMV-----GGQD 309 (493)
T ss_pred CCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhc-cchhhhhccCCCCCCC-----CCCc
Confidence 011223356778899999999999999998754 5799999999864 4577665543 33221 1224
Q ss_pred HHHHHHhhcCCCC-ceeecc-CCCCceeeeeecccCCCC----------------------hHHHHHHHHhhcccc-ccc
Q psy382 376 VAEMTAECFHPGN-QLVKCN-VTNHKYMACCLLYRGDVT----------------------PQEVNYALNKVKTKN-IQF 430 (536)
Q Consensus 376 ~~~l~~~~f~~~n-~~~~~~-~~~~~~ls~~~~~RG~~~----------------------~~~~~~~~~~~~~~~-~~f 430 (536)
+.++...+-+..- ..+.++ +...++++..+++||... ..++...+.....+. ...
T Consensus 310 l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~~~ 389 (493)
T cd06060 310 LIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSMSA 389 (493)
T ss_pred HHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcchh
Confidence 5555444422211 112222 335789999999999641 122322222222221 111
Q ss_pred ccCCCCCceEEeccCCCccc-----CCCCCC------------CCcceeeeecCchHHHHHHHHHHHHHHHHhhcccchh
Q psy382 431 VDWCPTGFKVGINKQKPSVI-----AGGDMA------------PSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVH 493 (536)
Q Consensus 431 ~~W~p~~~k~~~~~~~~~~~-----~~~~~~------------~~~~s~~~l~Nst~i~~~l~~l~~~f~~m~~kkAflH 493 (536)
..=.|.++++..-. |..+ ..+.+. ..-..++.|.|++++.+.|+.++.++.++--+| +|
T Consensus 390 ~~~~~~p~~~~~Pf--P~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~ 465 (493)
T cd06060 390 LSVLPLPLKIRVPF--PYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--KA 465 (493)
T ss_pred heecCCCCCCCCCC--chhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--hh
Confidence 11122222221100 0000 000000 001135779999999999999999999999999 89
Q ss_pred hhccCCCChhhHHHHHHHHHHHHHHHHH
Q psy382 494 WYLSEGMEEDDFIDARDNLLQLELDYID 521 (536)
Q Consensus 494 ~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~ 521 (536)
.|...|+|+|||+|+.+.|.++.++|++
T Consensus 466 ~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 466 SFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred cccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999974
No 32
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.96 E-value=6.9e-30 Score=248.27 Aligned_cols=140 Identities=37% Similarity=0.721 Sum_probs=127.8
Q ss_pred ccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCccccccccccccccc
Q psy382 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQ 231 (536)
Q Consensus 152 e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~ 231 (536)
||++|++||||||||.+||++++.||+++++. .....+.+.++||+|..+++|+||+|+||+||++|++++.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~----- 73 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS--KSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRAS----- 73 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS--SSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTS-----
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc--ccccccccccceeeecccccccccccccccccccccccccc-----
Confidence 78999999999999999999999999999872 22245677899999999999999999999999999999888
Q ss_pred cccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHHHhh
Q psy382 232 LQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLFRNR 301 (536)
Q Consensus 232 ~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE~~ 301 (536)
+.+++|++++++.+++|+||||++||+..|+++.++++|+||+++|+||.++||++ ||+|++|+|.+
T Consensus 74 ---~~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l 149 (216)
T PF00091_consen 74 ---PKRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEML 149 (216)
T ss_dssp ---EETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred ---cccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhh
Confidence 55689999999999999999999999999999999999999999999999999999 77777777664
No 33
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.94 E-value=5.4e-28 Score=235.00 Aligned_cols=133 Identities=41% Similarity=0.770 Sum_probs=116.5
Q ss_pred eeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCCcccccccccccccCCCcccceeeEecCCCCc------------
Q psy382 6 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTV------------ 73 (536)
Q Consensus 6 eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v------------ 73 (536)
|||+|||||||||||.+||++++.||+++++. ......++.++||+|...++|+||+|+||+||++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l 78 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS--KSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSL 78 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS--SSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc--ccccccccccceeeeccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999882 2244567889999999999999999999999999
Q ss_pred -------cccC--------------------------------------------CCcccC-------------CCCccc
Q psy382 74 -------TGKS--------------------------------------------GGGRGR-------------KGKRGR 89 (536)
Q Consensus 74 -------~~~~--------------------------------------------~~gtGs-------------y~~~~~ 89 (536)
.+++ |+|||| ||++.+
T Consensus 79 ~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~ 158 (216)
T PF00091_consen 79 FDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPI 158 (216)
T ss_dssp SCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEE
T ss_pred ccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccce
Confidence 1222 333777 988865
Q ss_pred ------ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCccc
Q psy382 90 ------ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQ 141 (536)
Q Consensus 90 ------~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~ 141 (536)
|... ++++++||++|+|+.|.+++|++++|||++|+++|.++++++.|+|+
T Consensus 159 ~~~~ilP~~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 159 ISFSILPFSS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEE-CGG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred eecccccccc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 7765 99999999999999999999999999999999999999999999885
No 34
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.91 E-value=7.7e-26 Score=236.55 Aligned_cols=111 Identities=32% Similarity=0.572 Sum_probs=98.2
Q ss_pred ceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCCcccccccccccccCCCcccceeeEecCCCCcc----------
Q psy382 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVT---------- 74 (536)
Q Consensus 5 ~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v~---------- 74 (536)
||||+||+||||||||.+||+++++|| |+|||||||+||+|+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh----------------------------~~pR~v~iD~e~~~i~~i~~~~~~~ 52 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH----------------------------LKARAVLIDMEEGVVNEILKGPLRD 52 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh----------------------------cCCcceeccCChhHHHHHhcCcccc
Confidence 699999999999999999999999998 679999999999981
Q ss_pred ---------ccCCCc--------------------------------------------ccC-------------CCCcc
Q psy382 75 ---------GKSGGG--------------------------------------------RGR-------------KGKRG 88 (536)
Q Consensus 75 ---------~~~~~g--------------------------------------------tGs-------------y~~~~ 88 (536)
++.|+| ||| ||++.
T Consensus 53 ~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~ 132 (379)
T cd02190 53 LFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVY 132 (379)
T ss_pred ccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccc
Confidence 122333 887 99886
Q ss_pred c------ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccce
Q psy382 89 R------ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLS 155 (536)
Q Consensus 89 ~------~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~ 155 (536)
+ |...++++|+|||++|+|++|.|++|.+++|||+||+ +|.++|++||+....++
T Consensus 133 ~~~~~v~P~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t 193 (379)
T cd02190 133 RFVTSVYPSADDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLT 193 (379)
T ss_pred eEEEeecCCCCCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCcc
Confidence 5 6556889999999999999999999999999999999 69999999999877665
No 35
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.91 E-value=1.4e-24 Score=192.96 Aligned_cols=125 Identities=46% Similarity=0.856 Sum_probs=112.7
Q ss_pred CcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceeeeeecccCCCChHHHHHHHHhhcccc-cc
Q psy382 351 PRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQ 429 (536)
Q Consensus 351 P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~ 429 (536)
|++|||+++|+|++......+++.++.+|++++|+++|+|++++|.+|+|||+++++||+++++|+.+++.+++.+. ++
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999998888899999999999999999999999999999999999999999999999999999887 89
Q ss_pred cccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHH
Q psy382 430 FVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNK 480 (536)
Q Consensus 430 f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~ 480 (536)
|++|+|+++|+++|+++|...+.+ ++++++|+|+|+|.++|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999766543 5789999999999999999864
No 36
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.84 E-value=8.4e-22 Score=207.33 Aligned_cols=151 Identities=30% Similarity=0.459 Sum_probs=102.8
Q ss_pred eeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCCccc-------ccccccccccCCCcccceeeEe------c-CCC
Q psy382 6 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRD-------DKVSSFFTEMNATKFTPRAIMV------D-LEP 71 (536)
Q Consensus 6 eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~~~~-------~~~~~~f~e~~~~~~~pRavlv------D-~ep 71 (536)
|||+|||||||||||.+||+++ --+|-+......... +..+.++...+.|..-+|.=.. | .+.
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d 77 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILD 77 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHHHHHH
Confidence 8999999999999999999997 333433221110000 0111222222222111111100 0 000
Q ss_pred Cc---------------cccCCCcccC-------------CCCccc------cccccc-ccccccccccccccccccCce
Q psy382 72 TV---------------TGKSGGGRGR-------------KGKRGR------ERKIST-SVVEPYNSILTTHSTLNNADC 116 (536)
Q Consensus 72 ~v---------------~~~~~~gtGs-------------y~~~~~------~~~~~~-~vv~~yN~~l~~~~l~e~~d~ 116 (536)
.+ +...++|||| ||++.+ |....+ ++++|||++|++++|.|++|.
T Consensus 78 ~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~ 157 (382)
T cd06059 78 RIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDS 157 (382)
T ss_pred HHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCe
Confidence 00 2334566777 998765 555444 899999999999999999999
Q ss_pred eeeechhHHHHHHHhhhCCCCCcccccccccccccccceeccc
Q psy382 117 TFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIG 159 (536)
Q Consensus 117 ~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l~~G 159 (536)
++++||++|+++|.+.+++..|+|.++|++||+....++.++=
T Consensus 158 ~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r 200 (382)
T cd06059 158 VILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLR 200 (382)
T ss_pred eEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccc
Confidence 9999999999999999999999999999999998888876653
No 37
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.76 E-value=1.9e-19 Score=185.98 Aligned_cols=79 Identities=34% Similarity=0.623 Sum_probs=68.6
Q ss_pred CCCccc------ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccceec
Q psy382 84 KGKRGR------ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLH 157 (536)
Q Consensus 84 y~~~~~------~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~l~ 157 (536)
||++.+ |.....+++++||++|++++|.|++|+++++||++|+++|.+.+++..|+|.++|++||+....++.+
T Consensus 118 y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 197 (328)
T cd00286 118 YPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTP 197 (328)
T ss_pred cCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccc
Confidence 997765 55444469999999999999999999999999999999999999999999999999999988877766
Q ss_pred ccccc
Q psy382 158 IGQAG 162 (536)
Q Consensus 158 ~GqcG 162 (536)
+-..|
T Consensus 198 ~r~~g 202 (328)
T cd00286 198 LRFDG 202 (328)
T ss_pred cccCc
Confidence 54443
No 38
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.73 E-value=9.8e-19 Score=166.93 Aligned_cols=124 Identities=31% Similarity=0.527 Sum_probs=106.7
Q ss_pred ccccccCCCCccccEEEEeCCccccccccccccccccccCCCCCCCCCceecCCCCccccccccccC-----CCchHHHH
Q psy382 196 SFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMT-----CGKTIIDK 270 (536)
Q Consensus 196 ~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~-----~g~~~~e~ 270 (536)
.||.+ |++.||+|++|+||++++.+..+ +.++.|++.+.+..+.++||||++||+. .|++..++
T Consensus 3 ~~~g~---g~~g~r~v~~d~e~~~i~~i~~~--------t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~ 71 (192)
T smart00864 3 KVFGV---GGYGPNAVLVDLEPGVVDEVRAN--------TDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEE 71 (192)
T ss_pred EEEEe---CCchhhHHhhhcccCCceEEEEC--------CHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHH
Confidence 45655 47899999999999999998766 5678899999999999999999999998 89999999
Q ss_pred HHHHHHhhhhcCCCCCceee---------cchhHHHHHh--------------------------h--------------
Q psy382 271 LTNTIRRIVENCDTFNGFLS---------SGLSPTLFRN--------------------------R-------------- 301 (536)
Q Consensus 271 i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE~--------------------------~-------------- 301 (536)
++|+||+++|+| ++|++ ||+|++++|. +
T Consensus 72 ~~~~ir~~le~~---d~~~i~~slgGGTGsG~~~~i~~~~~~~~~~~~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~ 148 (192)
T smart00864 72 SLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFVFEGVVRPYNAELGLEELREHVDSL 148 (192)
T ss_pred HHHHHHHHhcCC---CEEEEeccCCCCccccHHHHHHHHHHHcCCcEEEEEEEeEeecchhHHHHHHHHHHHHHHhCCEE
Confidence 999999999999 78888 8899988721 1
Q ss_pred -----------h-hhcCCCCCChhhHHHHHHHHhhhcccccccCC
Q psy382 302 -----------E-VTCVIERPAYQNLNHLTSQVMSSITASLRFEG 334 (536)
Q Consensus 302 -----------~-~~l~i~~~s~~~lN~lIA~~lss~t~~~Rf~g 334 (536)
| +++.+ .+.|.++|++||++|+++|.++||||
T Consensus 149 i~~dN~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 149 IVIDNDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred EEEEhHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0 22343 68999999999999999999999986
No 39
>KOG2530|consensus
Probab=99.69 E-value=3e-17 Score=166.92 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=100.2
Q ss_pred ccccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccC----CCCccccEEEEeCCcccc-----
Q psy382 150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMN----ATKFTPRAIMVDLEPTVT----- 220 (536)
Q Consensus 150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~----~~~~~pRailiDlEp~vi----- 220 (536)
|+||+|||+|+..|.+|++||++...-.++.++...+..... ..|++++..+ ..+|+||+|++|+....-
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~~~-~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~~~ 79 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGELC-PNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTLKYQ 79 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhhcC-cchhhhhccccccCceeeccceeEEecCccccccccc
Confidence 799999999999999999999998888888777544433111 1289999853 347999999999843321
Q ss_pred -------------------cccccccccccc----------c---------------------c----CCCCCCCCCcee
Q psy382 221 -------------------GSGLTSLLSDQL----------Q---------------------H----QRPNLFNPDQLI 246 (536)
Q Consensus 221 -------------------~~i~~~~~~~~~----------~---------------------~----~~~~~f~~~n~i 246 (536)
..++..+.++++ + . -.+..|+|+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~tl~ 159 (483)
T KOG2530|consen 80 GELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRTLN 159 (483)
T ss_pred hhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccccc
Confidence 001111000000 0 0 001235665554
Q ss_pred cCC-----CCccccccccccC-CCchHHHHHHHHHHhhhhcCCCCCceee--------cchhHHHHHhh
Q psy382 247 AGK-----EDAANNFARGRMT-CGKTIIDKLTNTIRRIVENCDTFNGFLS--------SGLSPTLFRNR 301 (536)
Q Consensus 247 ~~~-----~gsgNnwa~Gy~~-~g~~~~e~i~d~IR~~vE~CD~lqGF~i--------SGlGS~llE~~ 301 (536)
--+ .++-++|.-|+-. ....+.+++.|+||++||+||.||||++ ||++|.++|+.
T Consensus 160 ~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~GfgG~as~~le~l 228 (483)
T KOG2530|consen 160 PLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFGGFASKLLEEL 228 (483)
T ss_pred cCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCchhHHHHHHHHH
Confidence 332 2333566666432 2334788999999999999999999999 99999999665
No 40
>KOG1375|consensus
Probab=99.53 E-value=3.5e-15 Score=149.14 Aligned_cols=97 Identities=40% Similarity=0.721 Sum_probs=84.3
Q ss_pred cccccccccccccCCCcccceeeEecCCCCcccc--------------------------------------------CC
Q psy382 43 IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGK--------------------------------------------SG 78 (536)
Q Consensus 43 ~~~~~~~~~f~e~~~~~~~pRavlvD~ep~v~~~--------------------------------------------~~ 78 (536)
.+..++++||+++..++|+||||+||+||.+++. .|
T Consensus 6 ~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~~~sg~ghy~~ga~~~ds~~dclqgfql~hs~g 85 (369)
T KOG1375|consen 6 LQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDNGQSGKGHYTEGAELVDSSCDCLQGFQLTHSLG 85 (369)
T ss_pred ceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcCCccCccceeeeeeehhcccchhhcceeeeecc
Confidence 4568899999999999999999999999998221 13
Q ss_pred CcccC-------------CCCccc------ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCc
Q psy382 79 GGRGR-------------KGKRGR------ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPA 139 (536)
Q Consensus 79 ~gtGs-------------y~~~~~------~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~ 139 (536)
.|||| ||.+++ |...+++||+|||+.|+++.|++++|.++|+||+||++||.+.+.+.+|+
T Consensus 86 ggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~ksd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~lkl~~~~ 165 (369)
T KOG1375|consen 86 GGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKSDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTLKLKTPS 165 (369)
T ss_pred CccccCcchhhHHHHHHhccchhcccccccCcccccceecccccccchhhhhcCCCcccccccHHHHHHHhhhhcccCCC
Confidence 34777 777765 44449999999999999999999999999999999999999999999996
No 41
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.37 E-value=7.8e-13 Score=137.18 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=126.6
Q ss_pred ccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCccccccccccccccc
Q psy382 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQ 231 (536)
Q Consensus 152 e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~ 231 (536)
-+..+-+|+||+.+-..+++. +.. .+.+|+||+|+||+|+..+++++..
T Consensus 2 ~i~viGvGg~G~niv~~l~~~-----~~~---------------------~~~~~~~~~iavntD~~~L~~l~~~----- 50 (349)
T cd02202 2 RVLIIGVGQAGGRIVDALNRH-----DKR---------------------SGFGYCVGALAINTAKNDLKGLKHI----- 50 (349)
T ss_pred EEEEEEeCCcHHHHHHHHHHh-----CCC---------------------cCCccceeEEEEECCHHHHHhhhcC-----
Confidence 367889999999998888763 100 1235889999999999998866433
Q ss_pred cccCCCCCCCCCceecCCC-----CccccccccccCCCchHHHHHHHHHHhhhhcCCC--CCceee---------cchhH
Q psy382 232 LQHQRPNLFNPDQLIAGKE-----DAANNFARGRMTCGKTIIDKLTNTIRRIVENCDT--FNGFLS---------SGLSP 295 (536)
Q Consensus 232 ~~~~~~~~f~~~n~i~~~~-----gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~--lqGF~i---------SGlGS 295 (536)
+.++.++.+++ |+|+||.. |++..++.+|.||+++|.||. +|+|++ ||+|+
T Consensus 51 --------~~~~ki~~g~~~t~G~GaG~~~~~-----G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p 117 (349)
T cd02202 51 --------PAEDRILIGQSEVKGHGVGADREL-----GAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAP 117 (349)
T ss_pred --------CCCCEEEecCcccCCCCCCCChHH-----HHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHH
Confidence 45677888774 78888866 578999999999999999997 999999 78888
Q ss_pred HHHHhh-----------------------------h-----------------hhcCC---CCCChhhHHHHHHHHhhhc
Q psy382 296 TLFRNR-----------------------------E-----------------VTCVI---ERPAYQNLNHLTSQVMSSI 326 (536)
Q Consensus 296 ~llE~~-----------------------------~-----------------~~l~i---~~~s~~~lN~lIA~~lss~ 326 (536)
.++|.+ + +.+++ -.+.|.++|++||+.|+.+
T Consensus 118 ~iae~lke~~~~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~~~~~f~~~N~~Ia~~i~~l 197 (349)
T cd02202 118 VLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKRKGESVEEAYDRINEEIARRIGLL 197 (349)
T ss_pred HHHHHHHHhCCccEEEEEEecCCCCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 887211 0 11111 1367999999999999999
Q ss_pred cccccc-----CCCCCCChhhhhhcCCCCCcccccccccc
Q psy382 327 TASLRF-----EGALNVDLSEFQTNLVPFPRIHFPLAAFS 361 (536)
Q Consensus 327 t~~~Rf-----~g~~n~~l~~l~~nLvP~P~~~fl~~~~~ 361 (536)
+.++|| ||.+|.|++++.++|.+. .+.+.+++
T Consensus 198 ~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~g 234 (349)
T cd02202 198 LRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGYA 234 (349)
T ss_pred HHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEEE
Confidence 999999 999999999999999764 55555554
No 42
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.19 E-value=1.1e-12 Score=125.14 Aligned_cols=70 Identities=31% Similarity=0.509 Sum_probs=61.2
Q ss_pred CCCccc-----ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccce
Q psy382 84 KGKRGR-----ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLS 155 (536)
Q Consensus 84 y~~~~~-----~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~ 155 (536)
||+... | ...+.++++||+++++++|.+++|.+++|||++|+++|.+.+.+ .|.|.++|++|++....++
T Consensus 111 ~~~~~~~~~v~P-~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~ 185 (192)
T smart00864 111 YGILTVAVVTKP-FVFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRNLPI-RPAFKDANDLLAQAVSGIT 185 (192)
T ss_pred cCCcEEEEEEEe-EeecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHH
Confidence 776543 5 67889999999999999999999999999999999999888876 8999999999998765443
No 43
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=99.18 E-value=1.6e-11 Score=131.68 Aligned_cols=65 Identities=26% Similarity=0.491 Sum_probs=53.5
Q ss_pred ceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCCcccccccccccccC----CCcccceeeEecCCCCc
Q psy382 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMN----ATKFTPRAIMVDLEPTV 73 (536)
Q Consensus 5 ~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~f~e~~----~~~~~pRavlvD~ep~v 73 (536)
|||||||+||+.|.||..||+.....++..+++.. .....+++|+++. ..+|.||+|++|+....
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~----~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~ 69 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPA----SELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTL 69 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCcc----ccCCCceeeeccccCCCceeEcCcEEEEecCCcc
Confidence 79999999999999999999998888776666532 2345678899844 55899999999998776
No 44
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.98 E-value=7.5e-10 Score=112.84 Aligned_cols=153 Identities=15% Similarity=0.179 Sum_probs=110.6
Q ss_pred cceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCcccccccccccccccc
Q psy382 153 CLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQL 232 (536)
Q Consensus 153 ~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~~ 232 (536)
+..+-+|+||+.+-..+++. + ..-.+.+.||++.+.++.+...
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~--------------------------~~~~~~iainTd~~~L~~~~a~------ 45 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----D--------------------------KEGRSAVAVNTDAQDLLGLEAE------ 45 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----C--------------------------CCCccEEEEECcHHHHhcCCCC------
Confidence 56788999999998887752 1 0015789999998887654322
Q ss_pred ccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHHHh---
Q psy382 233 QHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLFRN--- 300 (536)
Q Consensus 233 ~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE~--- 300 (536)
.+=++.+ -.+...|+|+||..| ++..++++|.||+++|.||. |++ ||+++.+++.
T Consensus 46 ---~ki~iG~--~~t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke 112 (303)
T cd02191 46 ---NRVLIGQ--ARTKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKR 112 (303)
T ss_pred ---cEEecCC--ccccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHH
Confidence 0101111 113456999999887 48889999999999999995 566 7777777721
Q ss_pred -----------------------h-------------------------hhhcCCCCCChhhHHHHHHHHhhhccccccc
Q psy382 301 -----------------------R-------------------------EVTCVIERPAYQNLNHLTSQVMSSITASLRF 332 (536)
Q Consensus 301 -----------------------~-------------------------~~~l~i~~~s~~~lN~lIA~~lss~t~~~Rf 332 (536)
+ |.++.++ +.|.++|++||+.++++|..+||
T Consensus 113 ~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~~~~~-~af~~~N~~ia~~i~~it~~i~~ 191 (303)
T cd02191 113 IGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEKASLE-GAFDHADEVLVRAVGGLFGAIEI 191 (303)
T ss_pred hCCCEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 0224443 48999999999999999999999
Q ss_pred CCCCCCChhhhhhcCCCCCcccccc
Q psy382 333 EGALNVDLSEFQTNLVPFPRIHFPL 357 (536)
Q Consensus 333 ~g~~n~~l~~l~~nLvP~P~~~fl~ 357 (536)
||.+|.|++++.+.|- ...+-++.
T Consensus 192 ~g~invD~~dv~~~l~-~~G~a~ig 215 (303)
T cd02191 192 EGEINVDFADVKNVMD-GGGVAMVG 215 (303)
T ss_pred CCcccCCHHHHHHHhc-cCCeEEEE
Confidence 9999999999987763 34444443
No 45
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.84 E-value=6.8e-10 Score=115.35 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=49.2
Q ss_pred ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccc
Q psy382 90 ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRE 152 (536)
Q Consensus 90 ~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e 152 (536)
|.. .+.++++||+.+++++|.+++|.+++|||++|+++|.. + .+.|.++|++|++...
T Consensus 138 P~~-~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~-~---~~~f~~~N~~Ia~~i~ 195 (349)
T cd02202 138 PAR-EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES-V---EEAYDRINEEIARRIG 195 (349)
T ss_pred cCC-CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc-h---HHHHHHHHHHHHHHHH
Confidence 443 45699999999999999999999999999999999742 2 4899999999997543
No 46
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=98.79 E-value=6.2e-09 Score=107.87 Aligned_cols=159 Identities=13% Similarity=0.235 Sum_probs=111.4
Q ss_pred ccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCccccccccccccccc
Q psy382 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQ 231 (536)
Q Consensus 152 e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~ 231 (536)
.|..+-+|+||+.+=..+++. ++ .-...+.||++.+.++.+...
T Consensus 19 ~i~viGvGg~G~n~v~~l~~~-----~~--------------------------~~~~~iainTD~~~L~~~~a~----- 62 (349)
T TIGR00065 19 KIKVIGVGGGGNNTVNRMLEE-----GV--------------------------EGVEFIAINTDAQHLKTTKAD----- 62 (349)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CC--------------------------CceEEEEEECCHHHHhcCCCC-----
Confidence 478899999999998887763 10 125678899988776644322
Q ss_pred cccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee--------cchhHHHH-----
Q psy382 232 LQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS--------SGLSPTLF----- 298 (536)
Q Consensus 232 ~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i--------SGlGS~ll----- 298 (536)
.+.++.++ .+...|+|+||+.| ++..++.+|.||+++|.||.+ |++ ||+++.+.
T Consensus 63 ----~ki~iG~~--~t~G~GaG~~~~~G-----~~~aee~~d~Ir~~le~~D~v--fI~aglGGGTGSG~apvia~~ake 129 (349)
T TIGR00065 63 ----KKILIGKK--LTRGLGAGGNPEIG-----RKAAEESRDEIRKLLEGADMV--FITAGMGGGTGTGAAPVVAKIAKE 129 (349)
T ss_pred ----eEEEcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE--EEEEeccCccchhHHHHHHHHHHH
Confidence 11111111 13345899999975 789999999999999999997 665 56655444
Q ss_pred ---------------------Hhh------------h-------------hhcCCCCCChhhHHHHHHHHhhhccccccc
Q psy382 299 ---------------------RNR------------E-------------VTCVIERPAYQNLNHLTSQVMSSITASLRF 332 (536)
Q Consensus 299 ---------------------E~~------------~-------------~~l~i~~~s~~~lN~lIA~~lss~t~~~Rf 332 (536)
+++ + ..+.+. ..|..+|++|++.++++|.++||
T Consensus 130 ~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~~~i~-~af~~~N~iia~~i~~it~~ir~ 208 (349)
T TIGR00065 130 LGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPNLPLN-DAFKVADDVLVRAVKGISELITK 208 (349)
T ss_pred cCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcCCCHH-HHHHHHHHHHHHHHHhHHHhhcc
Confidence 111 0 123332 37999999999999999999999
Q ss_pred CCCCCCChhhhhhcCCCCCcccccccccc
Q psy382 333 EGALNVDLSEFQTNLVPFPRIHFPLAAFS 361 (536)
Q Consensus 333 ~g~~n~~l~~l~~nLvP~P~~~fl~~~~~ 361 (536)
||.+|.|+.++.+-|-- +..-++..+.+
T Consensus 209 ~g~iNvDf~dv~~vl~~-~G~a~iG~g~~ 236 (349)
T TIGR00065 209 PGLINIDFADVRAVMSG-GGVAMMGIGEA 236 (349)
T ss_pred CCcCcCCHHHHHHHHhc-CCeEEEEEEEe
Confidence 99999999999886633 44444444433
No 47
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.78 E-value=7e-09 Score=106.11 Aligned_cols=147 Identities=14% Similarity=0.245 Sum_probs=106.9
Q ss_pred cceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCcccccccccccccccc
Q psy382 153 CLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQL 232 (536)
Q Consensus 153 ~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~~ 232 (536)
|..+-+|+||+.+=..+++. ++ . -...+.||+|.+.++.+...
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-----------------------~---~~~~~a~ntD~~~L~~~~~~------ 45 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-----------------------E---GVEFIAANTDAQALAKSKAP------ 45 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-----------------------C---CceEEEEECCHHHHhcCCCC------
Confidence 55788999999988887762 10 0 15678999998887754422
Q ss_pred ccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee--------cchhHHHHH-----
Q psy382 233 QHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS--------SGLSPTLFR----- 299 (536)
Q Consensus 233 ~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i--------SGlGS~llE----- 299 (536)
.+.++.++ .+...|+|+||+.| ++..++.+|.||+++|.||.+ |++ ||+++.+.+
T Consensus 46 ---~k~~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v--~i~aglGGGTGSG~ap~ia~~a~e~ 113 (304)
T cd02201 46 ---NKIQLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV--FITAGMGGGTGTGAAPVIAKIAKEM 113 (304)
T ss_pred ---cEEEcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE--EEeeccCCCcchhHHHHHHHHHHHc
Confidence 12222221 24456999999988 467888999999999999997 555 566666551
Q ss_pred ---------------------hh----------h----------------hhcCCCCCChhhHHHHHHHHhhhccccccc
Q psy382 300 ---------------------NR----------E----------------VTCVIERPAYQNLNHLTSQVMSSITASLRF 332 (536)
Q Consensus 300 ---------------------~~----------~----------------~~l~i~~~s~~~lN~lIA~~lss~t~~~Rf 332 (536)
++ + +++.+.. .|..+|++|++.++++|.++|+
T Consensus 114 g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~ 192 (304)
T cd02201 114 GALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITK 192 (304)
T ss_pred CCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 11 0 1233333 6999999999999999999999
Q ss_pred CCCCCCChhhhhhcCCC
Q psy382 333 EGALNVDLSEFQTNLVP 349 (536)
Q Consensus 333 ~g~~n~~l~~l~~nLvP 349 (536)
||.+|.|+.++.+.|-.
T Consensus 193 ~g~invD~~dv~~vl~~ 209 (304)
T cd02201 193 PGLINLDFADVKTVMKN 209 (304)
T ss_pred CccccCCHHHHHHHhcc
Confidence 99999999999988754
No 48
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=98.69 E-value=1.1e-08 Score=89.18 Aligned_cols=64 Identities=23% Similarity=0.408 Sum_probs=46.8
Q ss_pred cccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCcccccc----CCCCccccEEEEeCCcc
Q psy382 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEM----NATKFTPRAIMVDLEPT 218 (536)
Q Consensus 151 ~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~----~~~~~~pRailiDlEp~ 218 (536)
+|||+||+|+..|.||++||+.. |..+..+..... .+-..+++|+++ +..+|+||+|++|+...
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~~~~~~--~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~ 68 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYDPDEKP--SEIDHDVLFREGITLSGTVTYTPRLLLFDLKGG 68 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccccCccccC--cccCCceEEecccCcCCCeeECCcEEEEecCCC
Confidence 69999999999999999999974 444432221110 123578999995 33579999999998654
No 49
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.63 E-value=9.1e-09 Score=104.91 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=55.8
Q ss_pred ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccccce
Q psy382 90 ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLS 155 (536)
Q Consensus 90 ~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e~i~ 155 (536)
.|...+.++.+||+.+++++|.+++|.+++|||++|+++|.+ +.++ +.|.++|++|++....++
T Consensus 123 ~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it 186 (303)
T cd02191 123 LPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLF 186 (303)
T ss_pred CCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999999976 7774 699999999998755333
No 50
>PRK13018 cell division protein FtsZ; Provisional
Probab=98.58 E-value=7.1e-08 Score=100.57 Aligned_cols=209 Identities=13% Similarity=0.203 Sum_probs=129.5
Q ss_pred ccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCccccccccccccccc
Q psy382 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQ 231 (536)
Q Consensus 152 e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~ 231 (536)
.|..+-+|+||+.+=..+++. ++ . -...|.|+++.+.++.+...
T Consensus 30 ~I~ViGvGGaG~N~v~~m~~~-----~~--~------------------------~v~~iaiNTD~q~L~~~~a~----- 73 (378)
T PRK13018 30 KIVVVGCGGAGNNTINRLYEI-----GI--E------------------------GAETIAINTDAQHLAMIKAD----- 73 (378)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CC--C------------------------CceEEEEECCHHHHhcCCCC-----
Confidence 478899999999988887752 10 0 14678999998777654322
Q ss_pred cccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHHH---
Q psy382 232 LQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLFR--- 299 (536)
Q Consensus 232 ~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~llE--- 299 (536)
.+-++.++ ++...|+|++|..| ++..++.+|.||+.+|.||. |++ ||+++.+++
T Consensus 74 ----~ki~iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iak 139 (378)
T PRK13018 74 ----KKILIGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAK 139 (378)
T ss_pred ----cEEecCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHH
Confidence 01111111 23446899999988 45678889999999999998 555 667766651
Q ss_pred -----------------------hh------------h-------------hhcCCCCCChhhHHHHHHHHhhhcccccc
Q psy382 300 -----------------------NR------------E-------------VTCVIERPAYQNLNHLTSQVMSSITASLR 331 (536)
Q Consensus 300 -----------------------~~------------~-------------~~l~i~~~s~~~lN~lIA~~lss~t~~~R 331 (536)
++ + .++.+. ..|..+|++|++.+.++|.++|
T Consensus 140 e~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~~~~~i~-~af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 140 EQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIVPNLPIA-DAFSVADEVIAETVKGITETIT 218 (378)
T ss_pred HcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhhhhhcc
Confidence 11 0 122222 3699999999999999999999
Q ss_pred cCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceeeeeecccC--
Q psy382 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRG-- 409 (536)
Q Consensus 332 f~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls~~~~~RG-- 409 (536)
|||.+|.|++++.+-|- ...+-++..+.+. ..-...+.+++.++.. +..++....+- ..+.+.|
T Consensus 219 ~~G~iN~Df~dv~~vl~-~~G~a~iG~G~a~---------g~~r~~~Av~~Al~sp--LL~~di~~A~~--~Lv~I~g~~ 284 (378)
T PRK13018 219 KPSLINLDFADVKSVMK-GGGVAMMGVGEAK---------GQNRAMEAVRAALANP--LLDVDYRGAKG--ALVHITGGP 284 (378)
T ss_pred cCCceecCHHHHHHHhc-cCCEEEEEEEEec---------CCcHHHHHHHHHHhCC--CcCCChhhhce--EEEEEECCC
Confidence 99999999999988663 2333333332221 0112333333333322 22234333222 2334455
Q ss_pred CCChHHHHHHHHhhcc
Q psy382 410 DVTPQEVNYALNKVKT 425 (536)
Q Consensus 410 ~~~~~~~~~~~~~~~~ 425 (536)
+.+..++.+....++.
T Consensus 285 ~l~l~ev~~~~~~i~~ 300 (378)
T PRK13018 285 DLTLKEANEAASRITE 300 (378)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4566777776665543
No 51
>PF14881 Tubulin_3: Tubulin domain
Probab=98.58 E-value=9.2e-08 Score=90.02 Aligned_cols=48 Identities=21% Similarity=0.509 Sum_probs=35.6
Q ss_pred ccccccccCCCc-hHHHHHHHH-HHhhhhcCCCCCceee--------cchhHHHHHhh
Q psy382 254 NNFARGRMTCGK-TIIDKLTNT-IRRIVENCDTFNGFLS--------SGLSPTLFRNR 301 (536)
Q Consensus 254 Nnwa~Gy~~~g~-~~~e~i~d~-IR~~vE~CD~lqGF~i--------SGlGS~llE~~ 301 (536)
.+|..|.-.... +..++++|+ ||+++|+||+|||||+ +|+++.++|++
T Consensus 41 d~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L 98 (180)
T PF14881_consen 41 DTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHL 98 (180)
T ss_pred ccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchHhHHHHHHHHH
Confidence 456666322222 334566775 9999999999999999 99999999776
No 52
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=98.45 E-value=3.5e-08 Score=102.29 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=54.0
Q ss_pred ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccc
Q psy382 90 ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRE 152 (536)
Q Consensus 90 ~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e 152 (536)
.|...+.++++||+.++++.|.+++|.+++|||++|+++|.+ +.+.. .|..+|++|++...
T Consensus 140 ~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~ 200 (349)
T TIGR00065 140 KPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVK 200 (349)
T ss_pred CCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHH
Confidence 355578899999999999999999999999999999999977 77744 99999999997644
No 53
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.42 E-value=9.1e-08 Score=83.58 Aligned_cols=113 Identities=27% Similarity=0.421 Sum_probs=87.4
Q ss_pred CCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHH--hhcCCCCceeeccCCCCceeeeeecccCCCCh
Q psy382 336 LNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTA--ECFHPGNQLVKCNVTNHKYMACCLLYRGDVTP 413 (536)
Q Consensus 336 ~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~--~~f~~~n~~~~~~~~~~~~ls~~~~~RG~~~~ 413 (536)
+|.|+++|.++|+|+| |+.++++|.... ....+..+++. .+|+..+++..+++.. ++++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 999999998752 34457777777 8899888877666553 777765 6788
Q ss_pred HHHHHHHHhhcccc--cccccCCC-CCceEEeccCCCcccCCCCCCCCcceeeeecC-chHHHHHHHHHH
Q psy382 414 QEVNYALNKVKTKN--IQFVDWCP-TGFKVGINKQKPSVIAGGDMAPSNKLVTMLTN-TTAMAEAWSKLN 479 (536)
Q Consensus 414 ~~~~~~~~~~~~~~--~~f~~W~p-~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~N-st~i~~~l~~l~ 479 (536)
+++.+.+..++.+. ..|+.|+| ..++++ .+.+.++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~------------------~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG------------------GDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC------------------CCcEEEEEEecccCccccccC
Confidence 99999988887653 67899998 443211 24678999 999999988753
No 54
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.35 E-value=7.7e-08 Score=98.44 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=63.8
Q ss_pred cccCCCcccC------------CCCccc----ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCC
Q psy382 74 TGKSGGGRGR------------KGKRGR----ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIER 137 (536)
Q Consensus 74 ~~~~~~gtGs------------y~~~~~----~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~ 137 (536)
+..-|+|||| |+.... .|...+..+++||+.++++.|.+++|.+++|||++|+++|.+.+.+..
T Consensus 91 ~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~ 170 (304)
T cd02201 91 TAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE 170 (304)
T ss_pred eeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH
Confidence 3344677888 554322 355578889999999999999999999999999999999988788876
Q ss_pred Ccccccccccccccc
Q psy382 138 PAYQNLNHLTSQQRE 152 (536)
Q Consensus 138 ~~~~~~N~~ia~m~e 152 (536)
.|..+|++|++...
T Consensus 171 -af~~~n~~ia~~i~ 184 (304)
T cd02201 171 -AFKLADDVLAQAVK 184 (304)
T ss_pred -HHHHHHHHHHHHHH
Confidence 79999999998654
No 55
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=98.21 E-value=1.2e-06 Score=76.40 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=44.8
Q ss_pred ceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCCcccccccccccccC----CCcccceeeEecCCCC
Q psy382 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMN----ATKFTPRAIMVDLEPT 72 (536)
Q Consensus 5 ~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~f~e~~----~~~~~pRavlvD~ep~ 72 (536)
|||||||+|+-.|-||..||+.--.. +.-+.... ...-..+++|++.. .-+|.||+|++|+--.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~--~~y~~~~~--~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~ 68 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESY--LPYDPDEK--PSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGG 68 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcc--cccCcccc--CcccCCceEEecccCcCCCeeECCcEEEEecCCC
Confidence 79999999999999999999965333 32111110 01124678999854 3489999999996444
No 56
>PRK13018 cell division protein FtsZ; Provisional
Probab=98.07 E-value=1.2e-06 Score=91.56 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=51.3
Q ss_pred cccccccccccccc---------cccccccccCceeeeechhHHHHHHHhhhCCCCCcccccccccccccc
Q psy382 91 RKISTSVVEPYNSI---------LTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRE 152 (536)
Q Consensus 91 ~~~~~~vv~~yN~~---------l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~e 152 (536)
..+..+|+.|||.- ++++.|.+++|.+++|||++|+++| ..+.+. ..|..+|++|++...
T Consensus 143 ~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~ 211 (378)
T PRK13018 143 ALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVK 211 (378)
T ss_pred CCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHH
Confidence 34456788898855 9999999999999999999999999 777776 479999999997654
No 57
>KOG2530|consensus
Probab=98.02 E-value=3.8e-06 Score=86.75 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=53.0
Q ss_pred CceeEEEecCcchhhhhhHHHHHHHHhhCCCCCCcccCCcccccccccccccC----CCcccceeeEecCCCCc
Q psy382 4 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMN----ATKFTPRAIMVDLEPTV 73 (536)
Q Consensus 4 m~eii~~~~GqcGnqig~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~f~e~~----~~~~~pRavlvD~ep~v 73 (536)
||||+|||+|+..|-+|..||++...-.+..++...+......+ +++++... .-.|+||.+++|+--.+
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~~~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~ 73 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGELCPN-DVLYRTGRTDHGQITYTPRLLLVDLKGEL 73 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhhcCcc-hhhhhccccccCceeeccceeEEecCccc
Confidence 89999999999999999999999888888877654433211112 67888644 33799999999976554
No 58
>PRK09330 cell division protein FtsZ; Validated
Probab=97.71 E-value=3.1e-05 Score=81.13 Aligned_cols=158 Identities=14% Similarity=0.173 Sum_probs=106.0
Q ss_pred ccceecccccccccchhhhhhhhhhcCCCCCCCcccCCcCCCCCccccccCCCCccccEEEEeCCccccccccccccccc
Q psy382 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQ 231 (536)
Q Consensus 152 e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~~~~~ 231 (536)
.|..+-+|.||+.+=.++++. ++ . -...|.+++|...++.....
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~--~------------------------~v~fia~NTD~q~L~~~~a~----- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI--Q------------------------GVEFIAANTDAQALLKSKAP----- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC--C------------------------CceEEEEeCcHHHHhcCCCC-----
Confidence 477889999999987777652 11 0 13568899988776644332
Q ss_pred cccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee--------cchhHHHH-----
Q psy382 232 LQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS--------SGLSPTLF----- 298 (536)
Q Consensus 232 ~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i--------SGlGS~ll----- 298 (536)
.+.+..+ -++...|+|+||..| ++..++.+|.||+.+|.||.+ |++ ||.+..+.
T Consensus 59 ----~ki~lG~--~~t~GlGaG~~pe~G-----~~aaee~~e~I~~~l~~~D~v--fI~AGmGGGTGTGaapvIA~iake 125 (384)
T PRK09330 59 ----VKIQLGE--KLTRGLGAGANPEVG-----RKAAEESREEIREALEGADMV--FITAGMGGGTGTGAAPVVAEIAKE 125 (384)
T ss_pred ----eEEEcCC--cccccCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCEE--EEEecCCCcccHHHHHHHHHHHHH
Confidence 1111111 123446899999966 688899999999999999999 777 44444333
Q ss_pred ---------------------Hhh----------h---------hhcCCC------CCChhhHHHHHHHHhhhccccccc
Q psy382 299 ---------------------RNR----------E---------VTCVIE------RPAYQNLNHLTSQVMSSITASLRF 332 (536)
Q Consensus 299 ---------------------E~~----------~---------~~l~i~------~~s~~~lN~lIA~~lss~t~~~Rf 332 (536)
+++ + +.+.+- ...|..+|.+|++.+.+++..+++
T Consensus 126 ~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~Af~~ad~vL~~~v~~It~~i~~ 205 (384)
T PRK09330 126 LGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLDAFKAADDVLRQAVQGITDLITK 205 (384)
T ss_pred cCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 0 111211 126999999999999999999999
Q ss_pred CCCCCCChhhhhhcCCCCCcccccccc
Q psy382 333 EGALNVDLSEFQTNLVPFPRIHFPLAA 359 (536)
Q Consensus 333 ~g~~n~~l~~l~~nLvP~P~~~fl~~~ 359 (536)
||.+|.|+.++.+-|- ....-++..+
T Consensus 206 pG~iNvDfaDvk~vm~-~~G~a~~G~G 231 (384)
T PRK09330 206 PGLINLDFADVKTVMS-EMGLAMMGIG 231 (384)
T ss_pred CCcccCCHHHHHHHHh-cCCeEEEEEE
Confidence 9999999888877553 2333344333
No 59
>PRK09330 cell division protein FtsZ; Validated
Probab=97.56 E-value=1.3e-05 Score=83.90 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=53.4
Q ss_pred ccccccccccccccccccccccccCceeeeechhHHHHHHHhhhCCCCCccccccccccccc
Q psy382 90 ERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQR 151 (536)
Q Consensus 90 ~~~~~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~m~ 151 (536)
.|...+..+.+||+.++++.|.+++|.+++++|++|.++|.+.+.+.. .|..+|++|++..
T Consensus 136 ~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v 196 (384)
T PRK09330 136 KPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAV 196 (384)
T ss_pred cCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHH
Confidence 355678899999999999999999999999999999999977777655 7899999988753
No 60
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=49.64 E-value=8.1 Score=40.11 Aligned_cols=36 Identities=11% Similarity=-0.025 Sum_probs=29.9
Q ss_pred ccccccccccccccccccccCceeeeechhHHHHHH
Q psy382 94 STSVVEPYNSILTTHSTLNNADCTFIVDNEALYEIC 129 (536)
Q Consensus 94 ~~~vv~~yN~~l~~~~l~e~~d~~~~~dN~al~~~~ 129 (536)
.+...-.-|+.-.+..|.+++|-+++++|+.|.++.
T Consensus 138 ~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~ 173 (338)
T COG0206 138 FEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGK 173 (338)
T ss_pred hcCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhcc
Confidence 344445668888999999999999999999998875
No 61
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=40.70 E-value=28 Score=32.24 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHH--HhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhhc
Q psy382 470 AMAEAWSKLNKKFEL--MFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVAT 524 (536)
Q Consensus 470 ~i~~~l~~l~~~f~~--m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~ 524 (536)
.|...+.++.+-+.. =|..-.||+||+.|+.||+ ..+.+|++.++-++.
T Consensus 96 ~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe------~l~~~I~d~~~~ag~ 146 (167)
T COG1528 96 KVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEE------KLFKTILDKLELAGN 146 (167)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Confidence 344444444444433 3667889999999998774 445666776666543
No 62
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=28.47 E-value=52 Score=26.65 Aligned_cols=50 Identities=12% Similarity=0.295 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHHH--HhhcccchhhhccC--CCChhhHHHHHHHHHHHHH
Q psy382 468 TTAMAEAWSKLNKKFEL--MFEKRAFVHWYLSE--GMEEDDFIDARDNLLQLEL 517 (536)
Q Consensus 468 st~i~~~l~~l~~~f~~--m~~kkAflH~Y~~~--Gmee~eF~Ea~~~l~~li~ 517 (536)
+..+.+.|..+++.+.. +..--|++.||.+. +.........+..+..++.
T Consensus 18 ~~~~~~~~~~il~~LYd~Dil~Eeail~W~~~~~~~~~~~~~~~~r~~~~~fi~ 71 (84)
T PF02020_consen 18 NPNLMPLFPKILQQLYDEDILEEEAILEWYEDSKPAVDGEGRAKVRKQAQPFIE 71 (84)
T ss_dssp TCGHGGHHHHHHHHHHHTTSS-HHHHHHHHHC-SSSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhhhhccHHHHHHHHHcCCccccchhHHHHHHHHHHHHH
Confidence 44566777788877776 45779999999871 1234444545555555553
No 63
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=25.98 E-value=31 Score=17.06 Aligned_cols=9 Identities=56% Similarity=1.442 Sum_probs=6.3
Q ss_pred hcCCCCCcc
Q psy382 345 TNLVPFPRI 353 (536)
Q Consensus 345 ~nLvP~P~~ 353 (536)
+.|+|||+.
T Consensus 3 sGlI~fpR~ 11 (11)
T PF08259_consen 3 SGLIPFPRV 11 (11)
T ss_pred ccccccCCC
Confidence 357888873
No 64
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=25.64 E-value=1.6e+02 Score=24.64 Aligned_cols=53 Identities=25% Similarity=0.311 Sum_probs=38.6
Q ss_pred ecCchHHHHHHHHH-------HHHHHHHhhcccchhhhccCCCC--hhhHHHHHHHHHHHHHHHHHh
Q psy382 465 LTNTTAMAEAWSKL-------NKKFELMFEKRAFVHWYLSEGME--EDDFIDARDNLLQLELDYIDV 522 (536)
Q Consensus 465 l~Nst~i~~~l~~l-------~~~f~~m~~kkAflH~Y~~~Gme--e~eF~Ea~~~l~~li~~Y~~~ 522 (536)
++|.++|...|..+ ++....+-.+|+|. ||+. -..+.||+..|+.|.+++++=
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888877754 55666677777655 4553 356999999999999999864
No 65
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=21.13 E-value=43 Score=29.98 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=18.4
Q ss_pred hhcccchhhhccCCCChhhHHHHHHHHHHHH
Q psy382 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLE 516 (536)
Q Consensus 486 ~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li 516 (536)
-+|.+|| ++-||+++|++||+....+-.
T Consensus 24 ~~k~~FL---~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 24 EKKIAFL---ESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHH---HHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHH---HcCCCCHHHHHHHHHhcCCcc
Confidence 4567777 345999999999999876554
No 66
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=20.19 E-value=27 Score=18.39 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=5.8
Q ss_pred cccccccccC
Q psy382 253 ANNFARGRMT 262 (536)
Q Consensus 253 gNnwa~Gy~~ 262 (536)
|+-||.|++-
T Consensus 1 g~~WAvGh~M 10 (14)
T PF02044_consen 1 GPQWAVGHFM 10 (14)
T ss_dssp --TCHHHCT-
T ss_pred CCccceeeee
Confidence 4679999763
Done!