RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy382
(536 letters)
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 478 bits (1232), Expect = e-166
Identities = 208/460 (45%), Positives = 282/460 (61%), Gaps = 88/460 (19%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG----EQLQPIRDDKVSSFFTEMNATKF 206
RE +S+HIGQAGIQ+G++CW+LF LEHG+ P G ++ + DD ++FF+E A K
Sbjct: 2 REVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTV-----TGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRM 261
PR + +DLEPTV TG+ R LF+P+QLI+GKEDAANNFARG
Sbjct: 62 VPRCVFLDLEPTVIDEVRTGT------------YR-QLFHPEQLISGKEDAANNFARGHY 108
Query: 262 TCGKTIIDKLTNTIRRIVENCDTFNGFL---------SSGL------------------- 293
T GK I+D + IR++ +NC GFL SGL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168
Query: 294 -----SP-----------------TLFRNREVTCVIERPA---------------YQNLN 316
SP +L + +V +++ A Y NLN
Sbjct: 169 FTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLN 228
Query: 317 HLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGV 376
L +QV+SS+TASLRF+GALNVDL+EFQTNLVP+PRIHF L++++PI + K HE L V
Sbjct: 229 RLIAQVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSV 288
Query: 377 AEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKT-KNIQFVDWCP 435
AE+T F P N + KC+ + KYMACCL+YRGDV P++VN A+ +KT + IQFVDWCP
Sbjct: 289 AEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCP 348
Query: 436 TGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWY 495
TGFK GIN Q P+V+ GGD+A + V M++N+TA+AE +S+++ KF+LM+ KRAFVHWY
Sbjct: 349 TGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWY 408
Query: 496 LSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDD 535
+ EGMEE +F +AR++L LE DY +V ++ADE E+D
Sbjct: 409 VGEGMEEGEFSEAREDLAALEKDYEEVGAESADEEGEEDV 448
Score = 97.9 bits (244), Expect = 8e-22
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG----EQLQPIRDDKVSSFFTEMNATKF 60
RE +S+HIGQAGIQ+G++CW+LF LEHG+ P G ++ + DD ++FF+E A K
Sbjct: 2 REVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PR + +DLEPTV
Sbjct: 62 VPRCVFLDLEPTV 74
Score = 95.9 bits (239), Expect = 3e-21
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
++ST+VVEPYNS+L+THS L + D ++DNEA+Y+IC L IERP Y NLN L +Q
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQ 233
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 450 bits (1160), Expect = e-155
Identities = 202/456 (44%), Positives = 278/456 (60%), Gaps = 78/456 (17%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSP----IGEQLQPIRDDKVSSFFTEMNATKF 206
REC+S+HIGQAGIQ+G++CW+L+ LEHG+ P ++ DD ++FF+E A K
Sbjct: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI+GKEDAANNFARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL---------SSGL------------------------ 293
I+D + IR++ +NC GFL SGL
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173
Query: 294 SP-----------------TLFRNREVTCVIERPA---------------YQNLNHLTSQ 321
SP +L + +V +++ A Y NLN L SQ
Sbjct: 174 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ 233
Query: 322 VMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTA 381
V+SS+TASLRF+GALNVD++EFQTNLVP+PRIHF L++++P+ + K HE L VAE+T
Sbjct: 234 VISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITN 293
Query: 382 ECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK-NIQFVDWCPTGFKV 440
F P + + KC+ + KYMACCL+YRGDV P++VN A+ +KTK IQFVDWCPTGFK
Sbjct: 294 SAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKC 353
Query: 441 GINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGM 500
GIN Q P+V+ GGD+A + V M++N+TA+AE +S+++ KF+LM+ KRAFVHWY+ EGM
Sbjct: 354 GINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM 413
Query: 501 EEDDFIDARDNLLQLELDYIDVATDTADEILEDDDS 536
EE +F +AR++L LE DY +V ++A+ ++ +
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEE 449
Score = 99.1 bits (247), Expect = 3e-22
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSP----IGEQLQPIRDDKVSSFFTEMNATKF 60
REC+S+HIGQAGIQ+G++CW+L+ LEHG+ P ++ DD ++FF+E A K
Sbjct: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTV 73
PRA+ VDLEPTV
Sbjct: 62 VPRAVFVDLEPTV 74
Score = 94.5 bits (235), Expect = 1e-20
Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 82 GRKGKRG----RERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIER 137
G+K K G ++ST+VVEPYNS+L+THS L + D ++DNEA+Y+IC L IER
Sbjct: 162 GKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER 221
Query: 138 PAYQNLNHLTSQ 149
P Y NLN L SQ
Sbjct: 222 PTYTNLNRLISQ 233
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 385 bits (991), Expect = e-130
Identities = 142/217 (65%), Positives = 175/217 (80%), Gaps = 1/217 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
IERP Y NLN L +QV+SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPL +++PI +
Sbjct: 218 IERPTYTNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISA 277
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
K HE L VAE+T CF P NQ+VKC+ + KYMACCLLYRGDV P++VN A+ +KTK
Sbjct: 278 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTK 337
Query: 427 -NIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
IQFVDWCPTGFKVGIN Q P+V+ GGD+A + V ML+NTTA+AEAWS+L+ KF+LM
Sbjct: 338 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLM 397
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDV 522
+ KRAFVHWY+ EGMEE +F +AR++L LE DY +V
Sbjct: 398 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434
Score = 169 bits (431), Expect = 4e-47
Identities = 70/148 (47%), Positives = 94/148 (63%), Gaps = 22/148 (14%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
RE +S+HIGQAGIQ+G++CW+L+ LEHG+ P G+ DD ++FF+E + K
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 207 TPRAIMVDLEPTV-----TGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRM 261
PRA+ +DLEPTV TG+ R LF+P+QLI+GKEDAANNFARG
Sbjct: 61 VPRAVFIDLEPTVIDEVRTGT------------YR-QLFHPEQLISGKEDAANNFARGHY 107
Query: 262 TCGKTIIDKLTNTIRRIVENCDTFNGFL 289
T GK IID + + IR++ +NC GFL
Sbjct: 108 TIGKEIIDLVLDRIRKLADNCTGLQGFL 135
Score = 107 bits (270), Expect = 3e-25
Identities = 37/58 (63%), Positives = 48/58 (82%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
++ST+VVEPYNS+LTTHS L ++DC+F+VDNEA+Y+IC L IERP Y NLN L +Q
Sbjct: 175 QVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQ 232
Score = 100 bits (251), Expect = 9e-23
Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 60
RE +S+HIGQAGIQ+G++CW+L+ LEHG+ P G+ DD ++FF+E + K
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 61 TPRAIMVDLEPTV 73
PRA+ +DLEPTV
Sbjct: 61 VPRAVFIDLEPTV 73
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 299 bits (768), Expect = 2e-96
Identities = 120/263 (45%), Positives = 175/263 (66%), Gaps = 10/263 (3%)
Query: 274 TIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFE 333
T+ R++EN D + L RN I+ P+Y +LN L S VMSS+T SLRF
Sbjct: 188 TLHRLLENSDCTFVVDNEALYDICRRNLR----IQNPSYDDLNQLISTVMSSVTTSLRFP 243
Query: 334 GALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKC 393
G LNVDL QTNLVP+PR+HFPL +++P ++ HE V+E+T + F P NQ+V C
Sbjct: 244 GYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSC 303
Query: 394 NVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAG 452
+ +YMA CLL+RGDV P++V+ A+ +V++K IQFV+WCPTGFKV I K+ PS A
Sbjct: 304 DPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAE 363
Query: 453 GDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNL 512
D++ ML+NTT++AEA+ +++ +F+LMF+KRAF+HWY+ EGMEE +F +AR+++
Sbjct: 364 VDVS-----GCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDV 418
Query: 513 LQLELDYIDVATDTADEILEDDD 535
LE +Y D+ + ED++
Sbjct: 419 ADLEEEYEAAEQDSYLDDEEDEE 441
Score = 146 bits (370), Expect = 1e-38
Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 208
RE ++L +GQ G Q+G++ W+ LEHG+ P G D++ FF E + KF P
Sbjct: 2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP V + +LF+P+ +I GKE A NN+ARG T GK II
Sbjct: 62 RAILVDLEPGV--------IDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEII 113
Query: 269 DKLTNTIRRIVENCDTFNGFL 289
D + + IRR + CD GFL
Sbjct: 114 DDVMDMIRREADGCDGLQGFL 134
Score = 100 bits (251), Expect = 1e-22
Identities = 35/58 (60%), Positives = 43/58 (74%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
K+S VVEPYNS+LT H L N+DCTF+VDNEALY+IC L I+ P+Y +LN L S
Sbjct: 174 KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLIST 231
Score = 87.1 bits (216), Expect = 3e-18
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 62
RE ++L +GQ G Q+G++ W+ LEHG+ P G D++ FF E + KF P
Sbjct: 2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVP 61
Query: 63 RAIMVDLEPTV 73
RAI+VDLEP V
Sbjct: 62 RAILVDLEPGV 72
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 269 bits (690), Expect = 4e-85
Identities = 132/439 (30%), Positives = 206/439 (46%), Gaps = 88/439 (20%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSP----IGEQLQPIRDDKVSSFFTEMNATKF 206
RE + + GQ G Q+G W++ EHGL P G+ + ++++ +F E + K+
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQL--ERINVYFNEASGGKY 58
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRAI+VDLEP + S+ S LF PD + G+ A NN+A+G T G
Sbjct: 59 VPRAILVDLEPGT----MDSVRSGPFG----QLFRPDNFVFGQSGAGNNWAKGHYTEGAE 110
Query: 267 IIDKLTNTIRRIVENCDTFNGF---------LSSGL------------------------ 293
+ID + + +R+ E+CD GF SG+
Sbjct: 111 LIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFP 170
Query: 294 SPT-----------------LFRNREVTCVIE---------------RPAYQNLNHLTSQ 321
SP L N + T I+ P Y +LNHL S
Sbjct: 171 SPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSA 230
Query: 322 VMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTA 381
VMS IT LRF G LN DL + N+VPFPR+HF + F+P+++ + L V E+T
Sbjct: 231 VMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQ 290
Query: 382 ECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKV 440
+ F N + C+ + +Y+ ++RG V+ +EV+ + V+ KN FV+W P K
Sbjct: 291 QMFDAKNMMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKT 350
Query: 441 GINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGM 500
+ P G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM
Sbjct: 351 AVCDIPP---RGLKMS-----ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 402
Query: 501 EEDDFIDARDNLLQLELDY 519
+E +F +A N+ L +Y
Sbjct: 403 DEMEFTEAESNMNDLVSEY 421
Score = 83.9 bits (208), Expect = 2e-17
Identities = 30/59 (50%), Positives = 40/59 (67%)
Query: 91 RKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
K+S +VVEPYN+ L+ H + N+D TF +DNEALY+IC L + P Y +LNHL S
Sbjct: 172 PKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSA 230
Score = 66.9 bits (164), Expect = 7e-12
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSP----IGEQLQPIRDDKVSSFFTEMNATKF 60
RE + + GQ G Q+G W++ EHGL P G+ + ++++ +F E + K+
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQL--ERINVYFNEASGGKY 58
Query: 61 TPRAIMVDLEP 71
PRAI+VDLEP
Sbjct: 59 VPRAILVDLEP 69
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 219 bits (560), Expect = 2e-66
Identities = 118/406 (29%), Positives = 191/406 (47%), Gaps = 60/406 (14%)
Query: 152 ECLSLHIGQAGIQMGDSCWQLFL---LEHGLSPIGEQLQPIR-DDKVSSFFTEMNATKFT 207
E +S+ IGQ G Q+G+ W+L + L+ + Q Q + D + +
Sbjct: 1 EIISIQIGQCGNQIGNKFWELLILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNW 60
Query: 208 PRA---IMVDLEPTV--------------------------TGSGLTSLLSDQLQHQRPN 238
R I +L + TGSGL SLL + L + P
Sbjct: 61 ARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPK 120
Query: 239 LFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTI---RRIVENCDTFNGFLSSGLSP 295
+ I ++N +++ N+I ++EN D +
Sbjct: 121 ILINTFSIFPSPQGSSN-----------VVEPY-NSILSLNHLLENSD-SVILFDNE--- 164
Query: 296 TLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHF 355
L+ I+ P++ +LN++ +Q++SSITASLRF G LN DL + TNLVPFPR+HF
Sbjct: 165 ALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHF 224
Query: 356 PLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQE 415
+F+P+ + E L + ++ E F+ N C+ T +Y+A L++RGDV E
Sbjct: 225 LTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVFQSE 284
Query: 416 VNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAW 475
+ A+NK+K K W P GFKV K+ P A K L+N+T++ E+
Sbjct: 285 IQEAINKLKNKL-NIQSWIPDGFKVSNCKKPPR-------AELGKSALFLSNSTSIGESL 336
Query: 476 SKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYID 521
+L +KF+ +++++AF+HWYL EGM+E +F +A +L L Y +
Sbjct: 337 ERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382
Score = 75.8 bits (187), Expect = 9e-15
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
+ S++VVEPYNSIL+ + L N+D + DNEALY I + +L I+ P++ +LN++ +Q
Sbjct: 133 QGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQ 190
Score = 41.5 bits (98), Expect = 8e-04
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 6 ECLSLHIGQAGIQMGDSCWQLFLL 29
E +S+ IGQ G Q+G+ W+L +L
Sbjct: 1 EIISIQIGQCGNQIGNKFWELLIL 24
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 207 bits (530), Expect = 5e-62
Identities = 110/424 (25%), Positives = 186/424 (43%), Gaps = 97/424 (22%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRA 210
RE + + +GQ G Q+G W L L EH RA
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH----------------------------LKARA 32
Query: 211 IMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDK 270
+++D+E V L L D LF+ QL+ A NN+A G G ID
Sbjct: 33 VLIDMEEGVVNEILKGPLRD--------LFDETQLVTDVSGAGNNWAVGYHQYGHQYIDS 84
Query: 271 LTNTIRRIVENCDTFNGFL---------SSGLS-----------PTLFR----------- 299
+ IR+ E CD+ F SGL P ++R
Sbjct: 85 ILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADD 144
Query: 300 ----------------NREVTCV--IERPA---YQNLNHLTSQVMSSITASLRFEGALNV 338
CV IE A + +N + + ++ ++T+S+RFEG+LNV
Sbjct: 145 DVITSPYNSVLALRELIEHADCVLPIENQALVPFDAMNSIVANLLLNLTSSMRFEGSLNV 204
Query: 339 DLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNH 398
DL+E NLVPFPR+HF +++ SP+ + +M ++ F +QL++ + +
Sbjct: 205 DLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHG 264
Query: 399 KYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPS 458
Y+AC LL RG+V+ ++ + ++K ++FV W G+K+G+ P + S
Sbjct: 265 LYLACALLVRGNVSVSDLRRNIERLK-PKLKFVKWNQEGWKIGLCSVPP-------VGHS 316
Query: 459 NKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELD 518
L+ L N T + +++L ++F +++++A +H Y GME+ DF +A +++ L +
Sbjct: 317 YSLL-CLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALESISNLIDE 375
Query: 519 YIDV 522
Y +
Sbjct: 376 YDYL 379
Score = 38.5 bits (90), Expect = 0.008
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 97 VVEPYNSILTTHSTLNNADCTFIVDNEAL 125
+ PYNS+L + +ADC ++N+AL
Sbjct: 147 ITSPYNSVLALRELIEHADCVLPIENQAL 175
Score = 31.1 bits (71), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEH 31
RE + + +GQ G Q+G W L L EH
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH 27
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 179 bits (455), Expect = 1e-51
Identities = 95/362 (26%), Positives = 145/362 (40%), Gaps = 110/362 (30%)
Query: 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAI 211
E +++ +GQAG Q+G W+ +
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQ-------------------------------------LV 23
Query: 212 MVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKL 271
+VD EP V + LS + LF QLI A NN+A G T G+ +++
Sbjct: 24 LVDTEPGV----IDETLSGPYR----LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEI 75
Query: 272 TNTIRRIVENCDTFNGFL---------SSGLSP--------------------------- 295
+ IR+ E CD+ GF SGL P
Sbjct: 76 LDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG 135
Query: 296 -------------TLFRNREVTCVIE---------------RPAYQNLNHLTSQVMSSIT 327
TL + + VI+ +P + ++N L + +SS+T
Sbjct: 136 VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLT 195
Query: 328 ASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPG 387
LRF+G+LNVDL E NLVPFPR+HF + ++P+ + L VAE+ +
Sbjct: 196 TPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSK 255
Query: 388 NQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKP 447
NQ+V C+ T+ Y+A LL RG V+P EV + +V + + W P G KVG++ P
Sbjct: 256 NQMVVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRT-SHLSWSPPGIKVGVSPTPP 314
Query: 448 SV 449
+
Sbjct: 315 AS 316
Score = 69.0 bits (169), Expect = 1e-12
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 97 VVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQ 150
+V PYNSILT H+ ++DC ++DNEAL++IC L I++P + ++N L +
Sbjct: 137 IVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATA 190
Score = 30.5 bits (69), Expect = 2.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 6 ECLSLHIGQAGIQMGDSCWQLFLL 29
E +++ +GQAG Q+G W+ +L
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQLVL 24
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 167 bits (426), Expect = 5e-50
Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 351 PRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGD 410
PR+HF + ++P+++ K H V E+T + F P N +V C+ + KY++C LL RGD
Sbjct: 1 PRLHFLMTGYAPLTSKGKASHRKTSVLELTRQLFDPKNMMVACDPRHGKYLSCALLIRGD 60
Query: 411 VTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTT 469
V+P+EV+ A+ +++ KN FV+W P KV I P + G D++ ML NTT
Sbjct: 61 VSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVPPYGLPGSDVS-----GLMLANTT 115
Query: 470 AMAEAWSKLNK 480
A+ E + ++ +
Sbjct: 116 AIQELFKRILE 126
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 176 bits (447), Expect = 2e-49
Identities = 99/330 (30%), Positives = 162/330 (49%), Gaps = 46/330 (13%)
Query: 220 TGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIID--KLTNT--- 274
TGSG+ +LL +L+ + P+ R+ ++ K+++T
Sbjct: 143 TGSGMGTLLISKLREEYPD---------------------RIMMTFSVFPSPKVSDTVVE 181
Query: 275 -------IRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSIT 327
+ ++VEN D + L FR ++T P Y +LNHL S VMS +T
Sbjct: 182 PYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTT----PTYGDLNHLVSAVMSGVT 237
Query: 328 ASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPG 387
LRF G LN DL + NLVPFPR+HF + F+P+++ + L V E+T + F
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAK 297
Query: 388 NQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQ-FVDWCPTGFKVGINKQK 446
N + + + +Y+ L+RG ++ +EV+ + V+ KN FV+W P K +
Sbjct: 298 NMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIP 357
Query: 447 PSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFI 506
P G M+ VT + N+TA+ E + ++ ++F MF ++AF+HWY EGM+E +F
Sbjct: 358 PK---GLKMS-----VTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 507 DARDNLLQLELDYIDVATDTADEILEDDDS 536
+A N+ L +Y T +E E D+
Sbjct: 410 EAESNMNDLVSEYQQYQDATVEEEGEFDEE 439
Score = 98.3 bits (245), Expect = 5e-22
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG-------EQLQPIRDDKVSSFFTEMNA 203
RE + + GQ G Q+G W++ EHG+ P G QL+ +++ ++ E
Sbjct: 2 REIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLE-----RINVYYNEATG 56
Query: 204 TKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTC 263
++ PRA+++DLEP S LF PD I G+ A NN+A+G T
Sbjct: 57 GRYVPRAVLMDLEPGTMDSVRAGPYG--------QLFRPDNFIFGQSGAGNNWAKGHYTE 108
Query: 264 GKTIIDKLTNTIRRIVENCDTFNGF 288
G +ID + + +R+ E+CD GF
Sbjct: 109 GAELIDSVLDVVRKEAESCDCLQGF 133
Score = 72.9 bits (179), Expect = 1e-13
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
K+S +VVEPYN+ L+ H + NAD + +DNEALY+IC L + P Y +LNHL S
Sbjct: 174 KVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVS 230
Score = 57.5 bits (139), Expect = 9e-09
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG-------EQLQPIRDDKVSSFFTEMNA 57
RE + + GQ G Q+G W++ EHG+ P G QL+ +++ ++ E
Sbjct: 2 REIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLE-----RINVYYNEATG 56
Query: 58 TKFTPRAIMVDLEP 71
++ PRA+++DLEP
Sbjct: 57 GRYVPRAVLMDLEP 70
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 165 bits (420), Expect = 2e-45
Identities = 85/265 (32%), Positives = 141/265 (53%), Gaps = 13/265 (4%)
Query: 272 TNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLR 331
T ++ ++VEN D + L FR T + P++ +LNHL S MS +T LR
Sbjct: 186 TLSVHQLVENADECMVLDNEALYDICFR----TLKLTTPSFGDLNHLISATMSGVTCCLR 241
Query: 332 FEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLV 391
F G LN DL + NL+PFPR+HF + F+P+++ + L V E+T + + N +
Sbjct: 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMC 301
Query: 392 KCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNI-QFVDWCPTGFKVGINKQKPSVI 450
+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K + P
Sbjct: 302 AADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--- 358
Query: 451 AGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARD 510
G MA T + N+T++ E + +++++F MF ++AF+HWY EGM+E +F +A
Sbjct: 359 KGLKMAS-----TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 511 NLLQLELDYIDVATDTADEILEDDD 535
N+ L +Y TADE E +D
Sbjct: 414 NMNDLVSEYQQYQDATADEEGEYED 438
Score = 87.6 bits (217), Expect = 2e-18
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 10/140 (7%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 208
RE L + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E + ++ P
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RA+++DLEP S + +F PD + G+ A NN+A+G T G +I
Sbjct: 62 RAVLMDLEPGTMDSVRSGPYG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELI 113
Query: 269 DKLTNTIRRIVENCDTFNGF 288
D + + +R+ ENCD GF
Sbjct: 114 DSVLDVVRKEAENCDCLQGF 133
Score = 70.2 bits (172), Expect = 6e-13
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
K+S +VVEPYN+ L+ H + NAD ++DNEALY+IC L + P++ +LNHL S
Sbjct: 174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLIS 230
Score = 52.9 bits (127), Expect = 2e-07
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQL--QPIRDDKVSSFFTEMNATKFTP 62
RE L + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E + ++ P
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVP 61
Query: 63 RAIMVDLEP 71
RA+++DLEP
Sbjct: 62 RAVLMDLEP 70
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 154 bits (390), Expect = 3e-41
Identities = 58/211 (27%), Positives = 110/211 (52%), Gaps = 16/211 (7%)
Query: 312 YQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIH 371
Y +N++ +Q++S++T+S+RFEG+LNVD++E TNLVP+PR+HF ++ +P
Sbjct: 249 YDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAP---LVSLKD 305
Query: 372 ENLG---VAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNI 428
+G + +M +C P +Q+V KY+A L+ RG +V + ++K + +
Sbjct: 306 VAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLK-EQL 364
Query: 429 QFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEK 488
+ W GFK G+ P + L+ L N + + + ++F ++++
Sbjct: 365 NMIYWNEDGFKTGLCNVSP-------LGQPYSLL-CLANNCCIRNKFESMLERFNKLYKR 416
Query: 489 RAFVHWYLSEGMEEDDFIDARDNLLQLELDY 519
++ VH Y E +E+ F + + + L DY
Sbjct: 417 KSHVHHYT-EYLEQAYFDETLETIQNLIDDY 446
Score = 77.5 bits (191), Expect = 4e-15
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTP-- 208
RE +++ +GQ G Q+G W + L EH P DD SFF ++ P
Sbjct: 2 REIVTVQVGQCGNQLGHRFWDVALKEH----KKINANPQYDDARDSFFENVSENVNRPGK 57
Query: 209 -----RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTC 263
RA++VD+E V L S L D LF+ + ++ A NN+A G M
Sbjct: 58 ENLKARAVLVDMEEGVLNQILKSPLGD--------LFDENFFVSDVSGAGNNWAVGHMEY 109
Query: 264 GKTIIDKLTNTIRRIVENCDTFNGFL 289
G ID ++ ++RR VE CD+ F
Sbjct: 110 GDKYIDSISESVRRQVEQCDSLQSFF 135
Score = 43.2 bits (102), Expect = 2e-04
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTP-- 62
RE +++ +GQ G Q+G W + L EH P DD SFF ++ P
Sbjct: 2 REIVTVQVGQCGNQLGHRFWDVALKEH----KKINANPQYDDARDSFFENVSENVNRPGK 57
Query: 63 -----RAIMVDLEPTVT 74
RA++VD+E V
Sbjct: 58 ENLKARAVLVDMEEGVL 74
Score = 42.4 bits (100), Expect = 4e-04
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 97 VVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIER 137
+ PYNS + +ADC +DN+AL I + L ++
Sbjct: 179 ITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKK 219
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 126 bits (318), Expect = 2e-31
Identities = 62/248 (25%), Positives = 123/248 (49%), Gaps = 25/248 (10%)
Query: 274 TIRRIVENCDTFNGFLSSGL---SPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASL 330
T++R++ N D ++ L + + P + +N L S VMS+ T +L
Sbjct: 189 TLKRLILNADCVVVLDNTALNRIATDRLHIQN-------PTFDQINSLVSTVMSASTTTL 241
Query: 331 RFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPIST-CTKTIHENLGVAEMTAECFHPGNQ 389
R+ G +N DL +L+P PR+HF + +++P+++ V ++ P N
Sbjct: 242 RYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNI 301
Query: 390 LVKCNVT-NHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKP 447
+V N Y++ + +G+V P +V+ +L +++ + F+ W P +V ++K+ P
Sbjct: 302 MVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSP 361
Query: 448 SVIAGGDMAPSNKLVT--MLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDD- 504
V P+ V+ ML N T++A + ++ K+F+ + ++RAF+ Y E M D+
Sbjct: 362 YV-------PTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNL 414
Query: 505 --FIDARD 510
F ++R+
Sbjct: 415 DEFDESRE 422
Score = 100 bits (252), Expect = 7e-23
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPI---RDDKVSSFFTEMNATKFT 207
RE ++L +GQ G Q+G W+ EHG+SP G L+ D+ FF + + +
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDG-ILEDFATDGGDRKDVFFYQADDEHYV 59
Query: 208 PRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKED--AANNFARGRMTCGK 265
PRAI++DLEP V S S NL+NP+ + K A NN+A G + G+
Sbjct: 60 PRAILIDLEPRVINSIQNSEYR--------NLYNPENIFLSKHGGGAGNNWASG-YSQGE 110
Query: 266 TIIDKLTNTIRRIVENCDTFNGFL 289
+ +++ + I R + D+ GF+
Sbjct: 111 EVQEEILDIIDREADGSDSLEGFV 134
Score = 67.3 bits (165), Expect = 6e-12
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPI---RDDKVSSFFTEMNATKFT 61
RE ++L +GQ G Q+G W+ EHG+SP G L+ D+ FF + + +
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDG-ILEDFATDGGDRKDVFFYQADDEHYV 59
Query: 62 PRAIMVDLEPTV 73
PRAI++DLEP V
Sbjct: 60 PRAILIDLEPRV 71
Score = 58.0 bits (141), Expect = 5e-09
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
+ S VV+PYNSILT + NADC ++DN AL I + +L I+ P + +N L S
Sbjct: 175 ESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVS 231
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 110 bits (277), Expect = 8e-28
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 154 LSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMV 213
+ + +G AG +G++ W+L EHG+ P G DK++ FF E + PR I +
Sbjct: 2 IVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFH---ADKINVFFEESGDGVYGPRFIAI 58
Query: 214 DLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTN 273
D +P V L++ + LF + L G E A NN A G T K ++
Sbjct: 59 DTDPQV--------LNEIKAGNK--LFIGNNLTKGLEGAGNNPAVGYYT-HKEAAEESLE 107
Query: 274 TIRRIVENCDTFNGFL---------SSGLSPTL 297
IR+ +E CD +GF SG +P +
Sbjct: 108 EIRKELEKCDGLDGFFITAGLGGGTGSGAAPVI 140
Score = 78.1 bits (193), Expect = 2e-16
Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 80/212 (37%)
Query: 8 LSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMV 67
+ + +G AG +G++ W+L EHG+ P G DK++ FF E + PR I +
Sbjct: 2 IVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFH---ADKINVFFEESGDGVYGPRFIAI 58
Query: 68 DLEPTV-----------------TGKSGGG----RGRKGKRGRERKI------------- 93
D +P V G G G G + +
Sbjct: 59 DTDPQVLNEIKAGNKLFIGNNLTKGLEGAGNNPAVGYYTHKEAAEESLEEIRKELEKCDG 118
Query: 94 -----------------STSVV-----EPYNSILTTHSTL-------------------- 111
+ V+ E Y ++ T
Sbjct: 119 LDGFFITAGLGGGTGSGAAPVIAEILKELYGALTVAVVTFPFTSEGVVRPYNAILGLKEL 178
Query: 112 -NNADCTFIVDNEALYEICSTKLGIERPAYQN 142
++D ++DN+AL EIC +L I+ PA++N
Sbjct: 179 IEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 97.2 bits (242), Expect = 1e-21
Identities = 57/236 (24%), Positives = 116/236 (49%), Gaps = 20/236 (8%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
+E P + N L S VMS+ T +LR+ G +N DL +L+P PR HF + ++P++
Sbjct: 220 LENPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE 279
Query: 367 -TKTIHENLGVAEMTAECFHPGNQLVKCN-----VTNHKYMACCLLYRGDVTPQEVNYAL 420
+ V ++ N +V + KY++ + +G+V P +V+ +L
Sbjct: 280 RQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSL 339
Query: 421 NKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLV-TMLTNTTAMAEAWSKL 478
+++ + F++W P +V ++++ P V ++++ ML N T++ +SK
Sbjct: 340 QRIRERKLANFIEWGPASIQVALSRKSPYV------QTAHRVSGLMLANHTSIRHLFSKC 393
Query: 479 NKKFELMFEKRAFVHWYLSEGMEED----DFIDARDNLLQLELDYIDVATDTADEI 530
+++ + +K+AF+ Y M D +F ++R+ + L +Y A ++ D I
Sbjct: 394 LSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEY--KACESPDYI 447
Score = 82.2 bits (203), Expect = 1e-16
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 208
RE ++L +GQ G Q+G W+ LEHG+S G E D+ FF + + + P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIP 62
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKE--DAANNFARGRMTCGKT 266
RA+++DLEP V S R NL+N + + A NN+A G G+
Sbjct: 63 RALLIDLEPRVINGIQNS-------EYR-NLYNHENIFVSDHGGGAGNNWASG-YHQGEQ 113
Query: 267 IIDKLTNTIRRIVENCDTFNGF 288
+ + + + I R + D+ GF
Sbjct: 114 VEEDIMDMIDREADGSDSLEGF 135
Score = 61.0 bits (148), Expect = 7e-10
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 62
RE ++L +GQ G Q+G W+ LEHG+S G E D+ FF + + + P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIP 62
Query: 63 RAIMVDLEPTVTGK 76
RA+++DLEP V
Sbjct: 63 RALLIDLEPRVING 76
Score = 55.6 bits (134), Expect = 4e-08
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 94 STSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTS 148
S VV+PYNS+LT NADC ++DN AL I +L +E P + N L S
Sbjct: 179 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVS 233
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 83.5 bits (207), Expect = 4e-17
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 153 CLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIM 212
+++ +GQ G Q+G + L + S E + D FF+E + + R+++
Sbjct: 2 VVTVQLGQCGNQLGHELFDT-LAKEASSSDDEGYK-YERDAQERFFSEKSDGQPIARSVL 59
Query: 213 VDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLT 272
VD+EP V S L+ + ++ +I + + NN+A G G I + +
Sbjct: 60 VDMEPKVIESTLSKSSGGTWK------YDKKNVICQQSGSGNNWAYGYYVHGPQIKEDIL 113
Query: 273 NTIRRIVENCDTFNGFL 289
+ IR+ VE CD+F GFL
Sbjct: 114 DLIRKEVEKCDSFEGFL 130
Score = 59.2 bits (144), Expect = 2e-09
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 399 KYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPS 458
K +A L+ RG + +V+W P+ + I+ K S
Sbjct: 334 KSLANLLILRGKDVTSADERKFRDP----LLYVNWSPSPVRFSISSHKRSFSK------Y 383
Query: 459 NKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDA 508
K VT+++N+ + + + +K MF A++H Y G+EE+DF+DA
Sbjct: 384 EKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDA 433
Score = 50.8 bits (122), Expect = 1e-06
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 7 CLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIM 66
+++ +GQ G Q+G + L + S E + D FF+E + + R+++
Sbjct: 2 VVTVQLGQCGNQLGHELFDT-LAKEASSSDDEGYK-YERDAQERFFSEKSDGQPIARSVL 59
Query: 67 VDLEPTV 73
VD+EP V
Sbjct: 60 VDMEPKV 66
Score = 48.8 bits (117), Expect = 5e-06
Identities = 12/54 (22%), Positives = 31/54 (57%)
Query: 97 VVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQ 150
+V+ YN++LT ++D +++N+ ++ ICS ++ + ++N + + Q
Sbjct: 174 IVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQ 227
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 71.4 bits (176), Expect = 2e-14
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
VV PYN+ L + D ++DN+AL +IC KL + RPA+++ N L +Q
Sbjct: 123 FSFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRKLPL-RPAFKDANDLLAQ 179
Score = 61.7 bits (151), Expect = 5e-11
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 204 TKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMT- 262
P A+ VDLEP V + +D NP+ L +GK A NN+ RG
Sbjct: 8 GGGGPNAVNVDLEPGVIDGVRAN--TDA------QALNPESLASGKIQAGNNWTRGLGAG 59
Query: 263 ----CGKTIIDKLTNTIRRIVENCDTFNGFLSSGL 293
G+ ++ + IR +E D F+++G+
Sbjct: 60 ADPEVGREAAEESLDEIREELEGADGV--FITAGM 92
Score = 40.9 bits (97), Expect = 5e-04
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 274 TIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFE 333
+ + E+ D+ + L R + RPA+++ N L +Q +S IT +RF
Sbjct: 137 GLEELREHVDSLIVIDNDALLDICGRKLPL-----RPAFKDANDLLAQAVSGITDLIRFP 191
Query: 334 G 334
G
Sbjct: 192 G 192
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 68.7 bits (169), Expect = 4e-14
Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 37/151 (24%)
Query: 336 LNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAE--CFHPGNQLVKC 393
+NVD ++ +T +VP F + P S + L AE+ N +
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEDSNIMGAK 53
Query: 394 NVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN--IQFVDWCP-TGFKVGINKQKPSVI 450
V + D+T +EVN A+ +++ K F+ W P ++G +
Sbjct: 54 GVLV--NITGGP----DLTLKEVNEAMERIREKADPDAFIIWGPVIDEELGGD------- 100
Query: 451 AGGDMAPSNKLVTMLTN-TTAMAEAWSKLNK 480
+T T + + +L++
Sbjct: 101 -----------EIRVTVIATGIGSLFKRLSE 120
>gnl|CDD|183873 PRK13159, PRK13159, cytochrome c-type biogenesis protein CcmE;
Reviewed.
Length = 155
Score = 30.7 bits (69), Expect = 0.91
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 201 MNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGR 260
MNAT+ R +V T +T L+ LQ LF P Q+ AG F G
Sbjct: 1 MNATR-KQRLWLVIGVLTAAALAVT-LIVLALQRNMSYLFTPSQVRAGAAAGYQQFRLGG 58
Query: 261 MTCGKTI---IDKLTNTIRRIVENCDTFNGFLSSGLSPTLFRNRE 302
M +I D L + I +N T + +G+ P LFR+ +
Sbjct: 59 MVKAGSIQRAADSLKVSFTVIDKNAATQVEY--TGILPDLFRDNQ 101
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 31.0 bits (71), Expect = 1.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 446 KPSVIAGGDMAPSNKLVTM 464
+P V AGGDM P + VT
Sbjct: 409 RPGVFAGGDMVPGPRTVTT 427
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 29.2 bits (66), Expect = 5.0
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 487 EKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYI--DVATDTADEILED 533
EK F ++E D D L +LEL+ + DVA + A+EILE
Sbjct: 45 EKPGFFDKAKITEIKEKDIEDL---LEELELELLESDVALEVAEEILES 90
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 29.6 bits (65), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 184 EQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGS 222
E+L+P DD V + +E+ + P DLEP V S
Sbjct: 48 EELEPAVDDNVGNPSSEVGKEENAPEVKAEDLEPAVAES 86
Score = 29.2 bits (64), Expect = 6.9
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 38 EQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGKSGGGRGRKGKR 87
E+L+P DD V + +E+ + P DLEP V GK
Sbjct: 48 EELEPAVDDNVGNPSSEVGKEENAPEVKAEDLEPAVAESVEHSSSEVGKE 97
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 29.2 bits (65), Expect = 5.5
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 178 GLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRP 237
G P GE RD + +FF ++ K R I +P V G G + +P
Sbjct: 245 GCGPEGE-----RDIREHAFFRRIDWDKLENREIQPPFKPKVCGKGAEN-FDKFFTRGQP 298
Query: 238 NLFNPDQLIAGKEDAAN 254
L PDQL+ D A+
Sbjct: 299 VLTPPDQLVIANIDQAD 315
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 27.7 bits (62), Expect = 5.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 500 MEEDDFIDARDNLLQLELDYIDVATDTADEILEDDD 535
+++DD D D+L L+ D +D+ D D + +DDD
Sbjct: 68 LDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
>gnl|CDD|132794 cd06884, PX_PI3K_C2_68D, The phosphoinositide binding Phox Homology
Domain of Class II Phosphoinositide 3-Kinases similar to
the Drosophila PI3K_68D protein. The PX domain is a
phosphoinositide (PI) binding module present in many
proteins with diverse functions. The Phosphoinositide
3-Kinase (PI3K) family of enzymes catalyzes the
phosphorylation of the 3-hydroxyl group of the inositol
ring of phosphatidylinositol. PI3Ks play an important
role in a variety of fundamental cellular processes,
including cell motility, the Ras pathway, vesicle
trafficking and secretion, immune cell activation and
apoptosis. PI3Ks are divided into three main classes (I,
II, and III) based on their substrate specificity,
regulation, and domain structure. Class II PI3Ks
preferentially use PI as a substrate to produce PI3P,
but can also phosphorylate PI4P to produce PI(3,4)P2.
They function as monomers and do not associate with any
regulatory subunits. Class II enzymes contain an
N-terminal Ras binding domain, a lipid binding C2
domain, a PI3K homology domain of unknown function, an
ATP-binding cataytic domain, a PX domain, and a second
C2 domain at the C-terminus. PI3K_68D is a novel PI3K
which is widely expressed throughout the Drosophila life
cycle. In vitro, it has been shown to phosphorylate PI
and PI4P. It is involved in signaling pathways that
affect pattern formation of Drosophila wings.
Length = 111
Score = 27.8 bits (62), Expect = 6.0
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 338 VDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENL-GVAE 378
+ E L FPLA P+ST + N+ VAE
Sbjct: 41 KEFLELYQKLC----RKFPLAKLHPLSTGSHVGRSNIKSVAE 78
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 28.7 bits (64), Expect = 7.8
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 240 FNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIR-RIVENCDTFNGFLS-------S 291
F+P+ A + + + I ++ NT+R R ++ D S S
Sbjct: 93 FDPETFEA-EMTKEDAKDEHEAHWRQRIKLRVENTVRWRENKSKDGKTTKESNAQIVRWS 151
Query: 292 GLSPTLFRNREVTCVIERPAYQNLNHLTS-------QVMSSITASLRF 332
S +L E+ ++ +P N NHLT Q I L F
Sbjct: 152 DGSYSLHIGNEIFDIMHQPLSVNQNHLTVSHEQTLLQPQGVIKKKLTF 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,683,676
Number of extensions: 2554901
Number of successful extensions: 2024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1958
Number of HSP's successfully gapped: 78
Length of query: 536
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 434
Effective length of database: 6,413,494
Effective search space: 2783456396
Effective search space used: 2783456396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)