RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy382
(536 letters)
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 447 bits (1151), Expect = e-154
Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 84/453 (18%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGFL---------SSGL------------------------SP 295
D + + +R+ E+CD GF SG+ SP
Sbjct: 114 DSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP 173
Query: 296 -----------------TLFRNREVTCVIERPA---------------YQNLNHLTSQVM 323
L N + T I+ A Y +LNHL S M
Sbjct: 174 KVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATM 233
Query: 324 SSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAEC 383
S +T LRF G LN DL + N+VPFPR+HF + F+P+++ + L V E+T +
Sbjct: 234 SGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 384 FHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGI 442
F N + C+ + +Y+ ++RG ++ +EV+ + ++ KN FV+W P K +
Sbjct: 294 FDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 353
Query: 443 NKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEE 502
P G M+ T + N+TA+ E + +++++F MF ++AF+HWY EGM+E
Sbjct: 354 CDIPP---RGLKMS-----STFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 503 DDFIDARDNLLQLELDYIDVATDTADEILEDDD 535
+F +A N+ L +Y TADE E ++
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATADEQGEFEE 438
Score = 102 bits (255), Expect = 2e-23
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
K+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 174 KVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSA 231
Score = 95.6 bits (238), Expect = 3e-21
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 63 RAIMVDLEPTV 73
RAI+VDLEP
Sbjct: 62 RAILVDLEPGT 72
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 438 bits (1127), Expect = e-150
Identities = 116/457 (25%), Positives = 192/457 (42%), Gaps = 89/457 (19%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG-----EQLQPIRDDKVSSFFTEMNATK 205
+ + IGQAG Q+ S W+ LEHG+ P+ S E ++
Sbjct: 4 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 63
Query: 206 FTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGK 265
+ PRAIMVDLEP+V D ++ +LFNP LI+ E A NFA G + G+
Sbjct: 64 YVPRAIMVDLEPSVI---------DNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGR 114
Query: 266 TIIDKLTNTIRRIVENCDTFNGFLS---------SGL----------------------- 293
++ ++ + + ++ CD G + SG
Sbjct: 115 EVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVL 174
Query: 294 -SP-----------------TLFRNREVTCVI---------------ERPAYQNLNHLTS 320
SP TL R+ + + E P +LN L +
Sbjct: 175 PSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLIT 234
Query: 321 QVMSSITASLRFEGALNVD--LSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAE 378
+ ++ ITAS+RF G L V+ L E TNLVP P +HF + AF+P++ ++ E LG+ E
Sbjct: 235 EALAGITASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEE 294
Query: 379 MTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGF 438
M F G+ C+ ++++ +LYRG + + + A + + W PT F
Sbjct: 295 MIKSLFDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAF 354
Query: 439 KVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSE 498
K+G +Q + + +L N T +A ++ F+ +++++AF +WYL+E
Sbjct: 355 KIGYVEQPG---ISHRKS-----MVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNE 406
Query: 499 GMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDD 535
GM E+ R + +L Y A ++D
Sbjct: 407 GMSEEQINVLRASAQELVQSYQVAEESGAKAKVQDSA 443
Score = 103 bits (259), Expect = 6e-24
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
++S+ V EPYN++ ++ +AD I DNEAL+++ K IE P +LN L ++
Sbjct: 178 QVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITE 235
Score = 93.3 bits (232), Expect = 2e-20
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG-----EQLQPIRDDKVSSFFTEMNATK 59
+ + IGQAG Q+ S W+ LEHG+ P+ S E ++
Sbjct: 4 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 63
Query: 60 FTPRAIMVDLEPTV 73
+ PRAIMVDLEP+V
Sbjct: 64 YVPRAIMVDLEPSV 77
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 428 bits (1102), Expect = e-147
Identities = 127/442 (28%), Positives = 193/442 (43%), Gaps = 86/442 (19%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG---EQLQPIRDDKVSSFFTEMNATKFT 207
RE LS+H+GQ G Q+ DS W+L L EHGL+ G E + + FF ++ K+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYV 61
Query: 208 PRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTI 267
PRA++VDLEP V +S LF+ ++ AANN+ARG G+ +
Sbjct: 62 PRAVLVDLEPGVIARIEGGDMS--------QLFDESSIVRKIPGAANNWARGYNVEGEKV 113
Query: 268 IDKLTNTIRRIVENCDTFNGFL---------SSGL------------------------S 294
ID++ N I VE GFL SGL S
Sbjct: 114 IDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPS 173
Query: 295 P-----------------TLFRNREVTCVI--------------ERPAYQNLNHLTSQVM 323
P + N + ++ P Y +LN++ + ++
Sbjct: 174 PLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLNRSPNYMDLNNIIALIV 233
Query: 324 SSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAEC 383
SS+TASLRF G LN DLSEF TNLVPFP HF A+F+P+ + ++ E
Sbjct: 234 SSVTASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARET 293
Query: 384 FHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPT--GFKVG 441
F N + Y+A L+RGDV ++V+ + ++ K++ + + P G K+G
Sbjct: 294 FAQDNFTAAIDWQQGVYLAASALFRGDVKAKDVDENMATIR-KSLNYASYMPASGGLKLG 352
Query: 442 INKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGME 501
+ P A L N T +A + +L +F++MF+ A+ HWY + G+
Sbjct: 353 YAETAPEGFASSG--------LALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVS 404
Query: 502 EDDFIDARDNLLQLELDYIDVA 523
D AR+ + L Y D +
Sbjct: 405 RDMMAKARNQIATLAQSYRDAS 426
Score = 104 bits (260), Expect = 4e-24
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
IS S VEPYN+ILT L+NAD ++DNEAL+ I KL P Y +LN++ +
Sbjct: 175 LISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIAL 231
Score = 90.2 bits (224), Expect = 1e-19
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG---EQLQPIRDDKVSSFFTEMNATKFT 61
RE LS+H+GQ G Q+ DS W+L L EHGL+ G E + + FF ++ K+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYV 61
Query: 62 PRAIMVDLEPTV 73
PRA++VDLEP V
Sbjct: 62 PRAVLVDLEPGV 73
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 327 bits (839), Expect = e-107
Identities = 147/263 (55%), Positives = 191/263 (72%), Gaps = 5/263 (1%)
Query: 274 TIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFE 333
T +E+ D + + RN + IERP Y NLN L SQ++SSITASLRF+
Sbjct: 190 TTHTTLEHSDCAFMVDNEAIYDICRRNLD----IERPTYTNLNRLISQIVSSITASLRFD 245
Query: 334 GALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKC 393
GALNVDL+EFQTNLVP+PRIHFPLA ++P+ + K HE L VAE+T CF P NQ+VKC
Sbjct: 246 GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 305
Query: 394 NVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAG 452
+ + KYMACCLLYRGDV P++VN A+ +KTK IQFVDWCPTGFKVGIN Q P+V+ G
Sbjct: 306 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPG 365
Query: 453 GDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNL 512
GD+A + V ML+NTTA+AEAW++L+ KF+LM+ KRAFVHWY+ EGMEE +F +AR+++
Sbjct: 366 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
Query: 513 LQLELDYIDVATDTADEILEDDD 535
LE DY +V D+ + E++
Sbjct: 426 AALEKDYEEVGVDSVEGEGEEEG 448
Score = 164 bits (417), Expect = 2e-45
Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 12/143 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG----EQLQPIRDDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G ++ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL 289
IID + + IR++ + C GFL
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGFL 136
Score = 99.8 bits (249), Expect = 1e-22
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
++ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L SQ
Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQ 233
Score = 92.9 bits (231), Expect = 2e-20
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG----EQLQPIRDDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G ++ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTVTGKSGGG 80
PRA+ VDLEPTV + G
Sbjct: 62 VPRAVFVDLEPTVIDEVRTG 81
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 308 bits (792), Expect = e-100
Identities = 60/274 (21%), Positives = 129/274 (47%), Gaps = 25/274 (9%)
Query: 274 TIRRIVENCD-TF---NGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITAS 329
T++R+ +N D N L+ + L I+ P++ +N L S +MS+ T +
Sbjct: 191 TLKRLTQNADCLVVLDNTALNRIATDRL--------HIQNPSFSQINQLVSTIMSASTTT 242
Query: 330 LRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSP-ISTCTKTIHENLGVAEMTAECFHPGN 388
LR+ G +N DL +L+P PR+HF + ++P + + V ++ P N
Sbjct: 243 LRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKN 302
Query: 389 QLVKCN---VTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINK 444
+V TNH Y+A + +G+V P +V+ +L +++ + F+ W P +V +++
Sbjct: 303 VMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSR 362
Query: 445 QKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDD 504
+ P + + ++ M+ N T+++ + + ++++ + ++ AF+ + E M +D+
Sbjct: 363 KSPYLPSAHRVS-----GLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDN 417
Query: 505 F---IDARDNLLQLELDYIDVATDTADEILEDDD 535
F +R+ + QL +Y +
Sbjct: 418 FDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 451
Score = 150 bits (381), Expect = 4e-40
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 208
RE ++L +GQ G Q+G W+ EHG+SP E+ D+ FF + + + P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKED--AANNFARGRMTCGKT 266
RA+++DLEP V S L S L+NP+ + + A NN+A G + G+
Sbjct: 63 RAVLLDLEPRVIHSILNS--------PYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEK 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFL 289
I + + + I R + D+ GF+
Sbjct: 114 IHEDIFDIIDREADGSDSLEGFV 136
Score = 112 bits (283), Expect = 6e-27
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
++S VV+PYNS+LT NADC ++DN AL I + +L I+ P++ +N L S
Sbjct: 177 EMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVST 234
Score = 90.9 bits (226), Expect = 1e-19
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 62
RE ++L +GQ G Q+G W+ EHG+SP E+ D+ FF + + + P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 63 RAIMVDLEPTV 73
RA+++DLEP V
Sbjct: 63 RAVLLDLEPRV 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 78/280 (27%)
Query: 251 DAANNFARGRMTCGKTIIDKLTN-----TI-------RRIVENCD--TFNGFL-SSGLSP 295
+ A+N + G +I+D + N TI +RI EN F + +
Sbjct: 1647 NRADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 296 TLFR--NREVTCVIERPAYQNLNHLTS--Q----VMS-SITASLRFEGALNVD------- 339
+F+ N T R L+ T Q +M + L+ +G + D
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLS-ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 340 LSEFQTNLVPFPRIHFPLAAFS---PISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVT 396
L E+ LA+ + I + + + G+ A P ++L + +
Sbjct: 1764 LGEYAA-----------LASLADVMSIESLVEVVFYR-GMTMQVAV---PRDELGR---S 1805
Query: 397 NHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCP--TGFKVGI------NKQKPS 448
N+ +A + P V + ++ + + V+ TG+ V I N+Q
Sbjct: 1806 NYGMIA--------INPGRVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVENQQ--- 1852
Query: 449 VIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEK 488
+A GD+ + + +L +L K E+
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL--SLEE 1890
Score = 43.1 bits (101), Expect = 3e-04
Identities = 56/375 (14%), Positives = 108/375 (28%), Gaps = 153/375 (40%)
Query: 14 QAGIQ---MGDSCWQLFLLEHGLSPIGEQLQPIRD--DKVSSFFTEMNATKFTPRAIMVD 68
Q G Q MG + L + S +D ++ + F + F+ I+++
Sbjct: 1624 Q-GSQEQGMG-----MDLYKT--SKA------AQDVWNRADNHFKDTYG--FSILDIVIN 1667
Query: 69 LEPTVTGKSGGGRGRKGKRGRERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEI 128
+T GG KGKR RE Y++++ +E
Sbjct: 1668 NPVNLTIHFGG---EKGKRIREN---------YSAMI--------------------FET 1695
Query: 129 CSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP 188
++ +N ++ ++ S G
Sbjct: 1696 IVDGKLKTEKIFKEINEHST------------------SYTFR--------SEKGL---- 1725
Query: 189 IRDDKVSSFFTEMNATKFTPRAIMV-------DLE-----P---TVTG------SGLTSL 227
++AT+FT A+ + DL+ P T G + L SL
Sbjct: 1726 ------------LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 228 -----LSDQLQ--HQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVE 280
+ ++ R + E +N+ + G+ ++ +VE
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQ--VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 281 NCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSS--------ITASLRF 332
G+ ++E N N Q +++ +T L F
Sbjct: 1832 RVGKRTGW-----------------LVE-IV--NYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 333 EGALNVDLSEFQTNL 347
+D+ E Q +L
Sbjct: 1872 IKLQKIDIIELQKSL 1886
Score = 39.6 bits (92), Expect = 0.003
Identities = 55/310 (17%), Positives = 86/310 (27%), Gaps = 83/310 (26%)
Query: 15 AGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVT 74
I DS W+ F I L FF + + P L P++
Sbjct: 281 VAIAETDS-WESFF-VSVRKAI-TVL----------FFIGVRCYEAYPN---TSLPPSIL 324
Query: 75 GKS-GGGRGRKGK----RGRERKISTSVVEPYNSILTTHS----TLNNADCTFIV--DNE 123
S G ++ V NS L +L N +V +
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 124 ALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG 183
+LY + T + P+ + + + +R + FL P+
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSER--------KLKFSNR------FL------PVA 424
Query: 184 -----EQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPN 238
L P D N F + I + + T GS L L S +
Sbjct: 425 SPFHSHLLVPASDLINKDL--VKNNVSFNAKDIQIPVYDTFDGSDLRVL-SGSI---SER 478
Query: 239 LFNPDQLIAGKED--AANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSPT 296
+ D +I F + T I+D F +SGL
Sbjct: 479 IV--DCIIRLPVKWETTTQF---KATH---ILD---------------FGPGGASGLGVL 515
Query: 297 LFRNREVTCV 306
RN++ T V
Sbjct: 516 THRNKDGTGV 525
Score = 34.6 bits (79), Expect = 0.10
Identities = 68/422 (16%), Positives = 110/422 (26%), Gaps = 165/422 (39%)
Query: 173 FLLEHG-----------LSPIGEQLQ-------------PIRDDKVSSFFTEMNATKFTP 208
L HG I QLQ DD+ ++ E+ KF
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP-AEL-VGKFL- 65
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
+ +EP+ G +L+ L F + + G + + A + T +
Sbjct: 66 GYVSSLVEPSKVGQ-FDQVLNLCLTE-----FE-NCYLEGND--IHALAAKLLQENDTTL 116
Query: 269 DKLTNTIRRIVENCDTFNGFLSSGLSPTLFR-----------------NREVTCVIE--- 308
K I+ + + LFR N + E
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD-DYFEELRD 175
Query: 309 -----RPAYQNL-----NHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLA 358
+L L+ + +++ A F L ++ E+ N P + L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKDY-LL 232
Query: 359 AFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNY 418
+ PIS C P +++ H + LL TP E+
Sbjct: 233 S-IPIS------------------C--PLIGVIQLA---HYVVTAKLL---GFTPGELRS 265
Query: 419 ALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKL 478
L TG G+ V A A+AE S
Sbjct: 266 YLKGA------------TGHSQGL------VTA-----------------VAIAETDS-- 288
Query: 479 NKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVA-------TDTADEIL 531
W + F + + + L +I V T IL
Sbjct: 289 ---------------W--------ESFFVSVRKAITV-LFFIGVRCYEAYPNTSLPPSIL 324
Query: 532 ED 533
ED
Sbjct: 325 ED 326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-04
Identities = 83/576 (14%), Positives = 162/576 (28%), Gaps = 189/576 (32%)
Query: 101 YNSILTT--HSTLNNADCTFIVD-------NEALYEICSTKLGIERPAYQNLNHLTSQQR 151
Y IL+ + ++N DC + D E + I +K + + L S+Q
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQE 76
Query: 152 ECLSLHIGQAGIQMGDSCWQLFLLEHGLSPI-GEQLQPIRDDK-----------VSSFFT 199
E + + + +++ + + L+ PI EQ QP + + F
Sbjct: 77 EMVQKFVEEV-LRI-NYKF---LMS----PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 200 EMNATKFTP----RAIMVDLEPT--VT-----GSGLTSLLSDQLQHQRPNLFNPDQ---L 245
+ N ++ P R +++L P V GSG T + D + + L
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 246 IAGKEDAA-------NNFARGRMTCGKTI-----------IDKLTNTIRRI--------- 278
++ ++ T I + +RR+
Sbjct: 188 NLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 279 ------VENCDTFNGFLSSGLSPTLF--RNREVTCVI--ERPAYQNLNHLTSQVMSSITA 328
V+N +N F S L R ++VT + + +L+H + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 329 SLRFEGALNVDLSEFQTNLVPFPR----IHFPLAAFSPISTCTKTIHENLG--------- 375
SL L+ + L PR + P +S ++I + L
Sbjct: 305 SL-LLKYLDCRPQD----L---PREVLTTN-PRR----LSIIAESIRDGLATWDNWKHVN 351
Query: 376 ------VAEMTAECFHPGNQLVKCNVTNHKYMAC--------------CLLYRGDVTPQE 415
+ E + P + L++ DV +
Sbjct: 352 CDKLTTIIESSLNVLEPAEY-------RKMFDRLSVFPPSAHIPTILLSLIW-FDVIKSD 403
Query: 416 VNYALNKVKTKNIQFVDWCPTGFKVGIN------KQKPSVIAGGDMAPSNKLVTMLTNTT 469
V +NK+ ++ + I K K + A +V N
Sbjct: 404 VMVVVNKLHKYSLVEKQPKE--STISIPSIYLELKVKLE----NEYALHRSIVDHY-NIP 456
Query: 470 AMAEAWSKLN---------------KKFELMFEKRAFVHWYLSEGMEEDDFIDAR----- 509
++ + K E F +L F++ +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-----FRFLEQKIRHDS 511
Query: 510 ----------DNLLQLEL--DYIDVATDTADEILED 533
+ L QL+ YI + ++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex
structure, solution structure, CLIP, structural protein;
NMR {Homo sapiens}
Length = 36
Score = 34.9 bits (80), Expect = 0.002
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 504 DFIDARDNLLQLELDYIDVATDTADEILEDDD 535
+F +AR+++ LE DY +V D+ + E++
Sbjct: 2 EFSEAREDMAALEKDYEEVGVDSVEGEGEEEG 33
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure
initiative, cell free, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana} SCOP:
g.82.1.1
Length = 86
Score = 27.7 bits (61), Expect = 2.6
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 77 SGGGRGRKGKRGRERKISTSVVEPYNSILTTHSTLNNADC-----TFIV 120
GGG +K R + + + S L + + C TFI
Sbjct: 9 EGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFIC 57
>2r6a_C DNAG primase, helicase binding domain, replicative helicase;
replication, DNAB; 2.90A {Geobacillus
stearothermophilus} PDB: 2r6c_G 1z8s_A*
Length = 143
Score = 28.2 bits (63), Expect = 4.2
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 464 MLTNTTAMAEAWSKLNKKFELMFE----KRAFVHW--YLSEGMEED--DFIDARDNLLQ- 514
M+ + + + ++ F + + + EG E D I LQ
Sbjct: 17 MMRS----RDVALVVQERIGGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGELQP 72
Query: 515 --LELDYIDVATDTADEILED 533
EL + +A D +++ LED
Sbjct: 73 LASELSLLLIADDVSEQELED 93
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B
3fey_B 1h6k_X
Length = 156
Score = 27.5 bits (61), Expect = 6.5
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 54 EMNATKFTPRAIMVDLEPTVTGKSGGGRGRKGKRGRER 91
+N T+ R I D + GRGR G + R+
Sbjct: 100 YINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDE 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,941,076
Number of extensions: 473030
Number of successful extensions: 924
Number of sequences better than 10.0: 1
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 32
Length of query: 536
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 438
Effective length of database: 3,965,535
Effective search space: 1736904330
Effective search space used: 1736904330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)