RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy382
(536 letters)
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 243 bits (622), Expect = 8e-79
Identities = 119/194 (61%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Query: 334 GALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKC 393
GALNVDL+EFQTNLVP+PR HFPLA ++P+ + K HE L VAE+T CF P NQ+VKC
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 394 NVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAG 452
+ + KYMACCLLYRGDV P++VN A+ +KTK IQFVDWCPTGFKVGIN + P+V+ G
Sbjct: 61 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120
Query: 453 GDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNL 512
GD+A + V ML+NTTA+AEAW++L+ KF+LM+ KRAFVHWY+ EGMEE +F +AR+++
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180
Query: 513 LQLELDYIDVATDT 526
LE DY +V D+
Sbjct: 181 AALEKDYEEVGVDS 194
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 209 bits (533), Expect = 9e-66
Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 9/187 (4%)
Query: 334 GALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKC 393
G LN DL + N+VPFPR+HF + F+P+++ + L V E+T + F N + C
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 394 NVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAG 452
+ + +Y+ ++RG ++ +EV+ + V+ KN FV+W P K +
Sbjct: 61 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP------ 114
Query: 453 GDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNL 512
T + N+TA+ E + +++++F MF ++AF+HWY EGM+E +F +A N+
Sbjct: 115 --PRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 172
Query: 513 LQLELDY 519
L +Y
Sbjct: 173 NDLVSEY 179
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 200 bits (510), Expect = 2e-62
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Query: 337 NVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVT 396
+ L E TNLVP P +HF + AF+P++ ++ E LG+ EM F G+ C+
Sbjct: 1 EISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPM 60
Query: 397 NHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMA 456
++++ +LYRG + + + A + + W PT FK+G +Q
Sbjct: 61 EGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAFKIGYVEQPGI-------- 112
Query: 457 PSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLE 516
K + +L N T +A ++ F+ +++++AF +WYL+EGM E+ R + +L
Sbjct: 113 SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELV 172
Query: 517 LDY 519
Y
Sbjct: 173 QSY 175
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 151 bits (382), Expect = 5e-43
Identities = 62/249 (24%), Positives = 96/249 (38%), Gaps = 75/249 (30%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 208
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
RAI+VDLEP S + +F PD + G+ A NN+A+G T G ++
Sbjct: 62 RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113
Query: 269 DKLTNTIRRIVENCDTFNGFL---------SSGLS------------------------- 294
D + + +R+ E+CD GF SG+
Sbjct: 114 DSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP 173
Query: 295 ----------------PTLFRNREVTCVIERPA---------------YQNLNHLTSQVM 323
L N + T I+ A Y +LNHL S M
Sbjct: 174 KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATM 233
Query: 324 SSITASLRF 332
S +T LRF
Sbjct: 234 SGVTTCLRF 242
Score = 93.5 bits (232), Expect = 4e-22
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
K+S +VVEPYN+ L+ H + N D T+ +DNEALY+IC L + P Y +LNHL S
Sbjct: 174 KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSA 231
Score = 87.3 bits (216), Expect = 4e-20
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 62
RE + + GQ G Q+G W++ EHG+ P G ++ ++++ ++ E K+ P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 63 RAIMVDLEPTVTGKSGGGRGRK 84
RAI+VDLEP G +
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQ 83
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 125 bits (314), Expect = 2e-33
Identities = 66/144 (45%), Positives = 90/144 (62%), Gaps = 12/144 (8%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG----EQLQPIRDDKVSSFFTEMNATKF 206
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G ++ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
PRA+ VDLEPTV T LF+P+QLI GKEDAANN+ARG T GK
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 267 IIDKLTNTIRRIVENCDTFNGFLS 290
IID + + IR++ + C GF
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGFSV 137
Score = 90.4 bits (224), Expect = 4e-21
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
++ST+VVEPYNSILTTH+TL ++DC F+VDNEA+Y+IC L IERP Y NLN L Q
Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 233
Score = 88.5 bits (219), Expect = 2e-20
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG----EQLQPIRDDKVSSFFTEMNATKF 60
REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G ++ DD ++FF+E A K
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61 TPRAIMVDLEPTVTGKSGGGRGRKGKRGRERKISTSVVEPYNSILTTHST 110
PRA+ VDLEPTV + G R+ + N+ H T
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAA--NNYARGHYT 109
Score = 58.8 bits (142), Expect = 2e-10
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 220 TGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTI---R 276
TGSG TSLL ++L + I + + + N+I
Sbjct: 145 TGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA------------VVEPYNSILTTH 192
Query: 277 RIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFE 333
+E+ D + + RN + IERP Y NLN L Q++SSITASLRF+
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLD----IERPTYTNLNRLIGQIVSSITASLRFD 245
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 120 bits (301), Expect = 2e-31
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 14/145 (9%)
Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNAT---K 205
+ + IGQAG Q+ S W+ LEHG+ P+ Q P SSFF+++ +
Sbjct: 2 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 61
Query: 206 FTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGK 265
+ PRAIMVDLEP+V D ++ +LFNP LI+ E A NFA G + G+
Sbjct: 62 YVPRAIMVDLEPSVI---------DNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGR 112
Query: 266 TIIDKLTNTIRRIVENCDTFNGFLS 290
++ ++ + + ++ CD G +
Sbjct: 113 EVLPEVMSRLDYEIDKCDNVGGIIV 137
Score = 93.5 bits (232), Expect = 3e-22
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 92 KISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQ 149
++S+ V EPYN++ ++ +AD I DNEAL+++ K IE P +LN L ++
Sbjct: 176 QVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITE 233
Score = 77.7 bits (191), Expect = 8e-17
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 5 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNAT---K 59
+ + IGQAG Q+ S W+ LEHG+ P+ Q P SSFF+++ +
Sbjct: 2 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 61
Query: 60 FTPRAIMVDLEPTVTGK 76
+ PRAIMVDLEP+V
Sbjct: 62 YVPRAIMVDLEPSVIDN 78
Score = 52.3 bits (125), Expect = 4e-08
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 274 TIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRF 332
+ + + D F + L R IE P +LN L ++ ++ ITAS+RF
Sbjct: 190 ALNTLRRSADACLIFDNEALFDLAHRKWN----IESPTVDDLNLLITEALAGITASMRF 244
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 30.2 bits (67), Expect = 0.32
Identities = 10/76 (13%), Positives = 23/76 (30%)
Query: 379 MTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGF 438
T V + + + P+ +++ K + ++D +G
Sbjct: 59 FTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGG 118
Query: 439 KVGINKQKPSVIAGGD 454
G +V+ GG
Sbjct: 119 TSGAEAGTLTVMLGGP 134
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 329
Score = 28.5 bits (63), Expect = 2.2
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 387 GNQLVKCNVTNHKY-----MACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVG 441
G+ KC C +GDV + + ++ C G +
Sbjct: 173 GDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQKDEYELLCLDGSRQP 232
Query: 442 INKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
++ K A ++ + + + + WS L+K
Sbjct: 233 VDNYKTCNWA---RVAAH--AVVARDDNKVEDIWSFLSKAQSDF 271
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 27.5 bits (60), Expect = 2.4
Identities = 10/66 (15%), Positives = 20/66 (30%)
Query: 389 QLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPS 448
L + H +L + P + + + +D +G G +
Sbjct: 75 YLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLT 134
Query: 449 VIAGGD 454
+ GGD
Sbjct: 135 FMVGGD 140
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 100
Score = 25.3 bits (55), Expect = 8.2
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 412 TPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQK 446
TP +V K + +++VD GI +
Sbjct: 1 TPDDV---FKLAKDEKVEYVDVRFCDLP-GIMQHF 31
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 24.8 bits (54), Expect = 9.3
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 77 SGGGRGRKGKRGRERKISTSVVEPYNSILTTHSTLNNADC-----TFIV 120
GGG +K R + + + S L + + C TFI
Sbjct: 9 EGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFIC 57
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 149
Score = 25.9 bits (56), Expect = 9.7
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 202 NATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRM 261
N T P+A++ D++ T+ + + D + + + +A
Sbjct: 1 NGTPGKPKAVIFDVDGTLA-------KMNGRGPYDLEKCDTDVINPMVVELSKMYALMGY 53
Query: 262 TC 263
Sbjct: 54 QI 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,927,638
Number of extensions: 88857
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 21
Length of query: 536
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 446
Effective length of database: 1,171,896
Effective search space: 522665616
Effective search space used: 522665616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)