RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3822
(138 letters)
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 28.7 bits (65), Expect = 1.0
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 11/36 (30%)
Query: 54 VYASLASILAFQESPAPNHSTNPVTGGSGSSPPPAN 89
VY ++ASI FQ P VT SG PPPAN
Sbjct: 93 VYLTIASIYDFQ--PW-------VT--SGLVPPPAN 117
>gnl|CDD|185414 PTZ00048, PTZ00048, cytochrome c; Provisional.
Length = 115
Score = 27.1 bits (60), Expect = 1.9
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 64 FQESPAPNHSTNPVTGGSGSSPPPANQSASRPTHAREYHFLDIEIKYGVAQVDSSEFTYL 123
F+ A H+ N GG+ P + R + + ++ + D G+ D F YL
Sbjct: 22 FKAKCAQCHTIN--KGGAVKQGPNLHGFYGRKSGSADFPYSDANKNSGIVWSDKHLFEYL 79
Query: 124 YVPSTYLPSS 133
P Y+P +
Sbjct: 80 VNPKLYIPGT 89
>gnl|CDD|132218 TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein
Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) is a widespread family of
prokaryotic direct repeats with spacers of unique
sequence between consecutive repeats. This protein
family is a CRISPR-associated (Cas) family strictly
associated with the Cyano subtype of CRISPR/Cas locus,
found in several species of Cyanobacteria and several
archaeal species. This family is designated Csc3 for
CRISPR/Cas Subtype Cyano protein 3, as it is often the
third gene upstream of the core cas genes,
cas3-cas4-cas1-cas2 [Mobile and extrachromosomal element
functions, Other].
Length = 953
Score = 27.6 bits (61), Expect = 2.3
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 1 MAEKLHKPKRKETVTEILRLGVKQLEVYRHPKILSVLHPIEECPDALAFATEPVY 55
+ EKL + + E+ R ++ + ++PK +VL P E +A+ +
Sbjct: 818 LTEKLENSNLTKRLVELYRRFY-RVALSKNPKPHAVLKPFREAVEAILSKPGSQW 871
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 27.8 bits (62), Expect = 2.5
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 44 PDALAFATEPVYASLASILAFQESP--APNHSTNPVTGGSGSSPPPANQSASRPTHAREY 101
D + F T A E +P S PV + P + + E
Sbjct: 219 ADQITFETAVA-APQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE- 276
Query: 102 HFLDIEIKYGVAQVD 116
I+ V +VD
Sbjct: 277 ---STSIRVAVEKVD 288
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 26.9 bits (60), Expect = 3.8
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 13/37 (35%)
Query: 54 VYASLASILAFQESPAPNHSTNP-VTGGSGSSPPPAN 89
VY ++ASI FQ P VT SG PPPAN
Sbjct: 90 VYLTIASIADFQ----------PWVT--SGLVPPPAN 114
>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase.
Length = 364
Score = 26.7 bits (59), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 43 CPDALAFATEPVYASLA 59
CP+ FAT PV+ SLA
Sbjct: 123 CPEMKFFATPPVHGSLA 139
>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 27.1 bits (60), Expect = 4.1
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 49 FATEPVYASLASILAFQESPAPNHSTNPVTGG 80
FA E VYA F P S + G
Sbjct: 264 FAMEEVYAPGPGARRFLCGTQPVLSLAALEGA 295
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 26.5 bits (59), Expect = 6.1
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 39 PIEECPDALAFATEPVYASLASILAFQESPAPNHSTNPVT-GGSG 82
E LA +P+ LA A ES T + G G
Sbjct: 110 SGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGG 154
>gnl|CDD|220417 pfam09812, MRP-L28, Mitochondrial ribosomal protein L28. Members
of this family are components of the mitochondrial
large ribosomal subunit. Mature mitochondrial ribosomes
consist of a small (37S) and a large (54S) subunit. The
37S subunit contains at least 33 different proteins and
1 molecule of RNA (15S). The 54S subunit contains at
least 45 different proteins and 1 molecule of RNA
(21S).
Length = 146
Score = 25.4 bits (56), Expect = 7.9
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 1 MAEKLHKPKRKETVTEILRLGVKQLEVYRHPKILSVLHPIEE 42
AE L K K+ + E + + + + K L P+E+
Sbjct: 2 CAEPLKKKKKVDPQREQRKRKRLEKFIRKRTKSARGLKPVED 43
>gnl|CDD|220131 pfam09172, DUF1943, Domain of unknown function (DUF1943). Members
of this family adopt a structure consisting of several
large open beta-sheets. Their exact function has not, as
yet, been determined.
Length = 288
Score = 25.7 bits (57), Expect = 9.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 117 SSEFTYLYVPSTYLPSSVAF 136
++E + P ++LP SV
Sbjct: 20 AAEANVINSPDSFLPRSVMA 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.382
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,963,445
Number of extensions: 601347
Number of successful extensions: 603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 26
Length of query: 138
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 51
Effective length of database: 7,078,804
Effective search space: 361019004
Effective search space used: 361019004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)