RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3822
         (138 letters)



>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
           major}
          Length = 467

 Score = 31.6 bits (71), Expect = 0.068
 Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 4/72 (5%)

Query: 66  ESPAPNHSTNPVTGGSGSSPPPANQSASRPTHAREYHFLD----IEIKYGVAQVDSSEFT 121
            S          T G      P   +A+      E    +    +          +S  +
Sbjct: 229 NSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSS 288

Query: 122 YLYVPSTYLPSS 133
            + + +TY+ +S
Sbjct: 289 RIALVNTYVANS 300


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.23
 Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 28/121 (23%)

Query: 16  EILRLGVKQLEVYRHPKILSVLHPIEECPDALAFA-TEPVYASLASILAFQESPAPNHST 74
           E +R G+   + ++H     +   IE   + L  A    ++  L+ +  F          
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-V--FPP-------- 383

Query: 75  NPVTGGSGSSPPPANQ-----SASRPTHAREYHFLDIEIKYGVAQVDSSEFTYLYVPSTY 129
                   S+  P             +       ++   KY + +    E T   +PS Y
Sbjct: 384 --------SAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTI-SIPSIY 432

Query: 130 L 130
           L
Sbjct: 433 L 433



 Score = 28.7 bits (63), Expect = 0.68
 Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 35/143 (24%)

Query: 10  RKETVTEILRLGVKQLEVYRHPKILSVLHPIEECPDALAFATEPVYASLASIL--AFQES 67
           R + VT+ L           H  +      +    +  +         L   L    Q+ 
Sbjct: 273 RFKQVTDFL-----SAATTTHISLDHHSMTLTP-DEVKSL--------LLKYLDCRPQDL 318

Query: 68  PAPNHSTNP----VTGGSGSSPPPANQSASRPTHAREYHF--LDIEIKYGVAQVDSSEFT 121
           P    +TNP    +   S           +   + +  +   L   I+  +  ++ +E+ 
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGL------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 122 YLYV------PSTYLPSSVAFCI 138
            ++       PS ++P+ +   +
Sbjct: 373 KMFDRLSVFPPSAHIPTIL-LSL 394


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.66
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 12  ETVTEILRLGVKQLEVYRHP-KILSVLHPIEECPDALAFATEPVYASLASILAFQ 65
           ET++E++R  +   +V+     IL  L      PD     + P+  S   I   Q
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI--SCPLIGVIQ 245


>1v8c_A MOAD related protein; riken structural genomics/proteomics
           initiative, RSGI, structural genomics, protein binding;
           1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
          Length = 168

 Score = 25.3 bits (55), Expect = 6.7
 Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 2/51 (3%)

Query: 76  PVTGGSGSSPPPANQSASRPTHAREYHFLDIEIKYGVAQVDSSEFTYLYVP 126
           PV GG       A        +  E+         GV ++  +   +  V 
Sbjct: 83  PVAGGGFERTFGAFPPWLLERYLEEW--GGTREGEGVYRLPGAVVRFREVE 131


>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
           3.15A {Homo sapiens} SCOP: a.4.5.21
          Length = 157

 Score = 25.1 bits (54), Expect = 7.2
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 44  PDALAFATEPVYASLASILAFQESPAPNHSTNPVTGGSGSSPPPANQSASR 94
           P+ L      V        +   S   + S +   GG    P P  +++SR
Sbjct: 89  PEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSR 139


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,055,992
Number of extensions: 109300
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 8
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)