RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3822
         (138 letters)



>d1lsha3 f.7.1.1 (A:621-1073) Lipovitellin-phosvitin complex;
           beta-sheet shell regions {Lamprey (Ichthyomyzon
           unicuspis) [TaxId: 30308]}
          Length = 452

 Score = 24.3 bits (52), Expect = 6.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 117 SSEFTYLYVPSTYLPSSVAF 136
           S+++  +  PS  LP +VA 
Sbjct: 21  SADYFRINSPSGPLPRAVAA 40


>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score = 24.0 bits (51), Expect = 8.7
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 26  EVYRHPKILSVLHPIEECPDALAFATEPVYASLASILAFQESPAPNHSTNPVTGGSGSSP 85
           +  R   +L  +   E        A +    S+  I+  ++    N   + +T    SSP
Sbjct: 138 DFERDAYLLQRM--EEFIGTVRGKAMKKWVESITKIIQRKKIARDNGPGHNIT--FQSSP 193

Query: 86  PPANQSASRPTHAREYHFLDIE 107
           P      SRP H   +  L + 
Sbjct: 194 PTVEWHISRPGHIETFDLLTLH 215


>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 23.6 bits (51), Expect = 9.4
 Identities = 7/42 (16%), Positives = 18/42 (42%)

Query: 6   HKPKRKETVTEILRLGVKQLEVYRHPKILSVLHPIEECPDAL 47
           H+ +  +T+ E++    K+LE +      +++      P   
Sbjct: 146 HQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKDIASPLKT 187


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,877
Number of extensions: 20149
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 4
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)