BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3823
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 23/174 (13%)
Query: 31 LVSCTVDANPQA--QYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT-PTSELEYGTLLC 87
++ C +NP YF + +G +T ++ G + + T P E G C
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE---GVYTC 287
Query: 88 WARNEQGN-QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
N G Q+ VV A + E KP I V+ +G D+ C +
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSAPKYEQ---KPEKVI---------VVKQGQDVTIPCKVTG 335
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
P ++W+HN +S + +T+ LV++ V G Y C A N G+
Sbjct: 336 LPA-PNVVWSHNAKPLSGGRAT---VTDSGLVIKGVKNGDKGYYGCRATNEHGD 385
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 11/180 (6%)
Query: 34 CTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS-ELEYGTLLCWARNE 92
C P+ + TW + + DG+ SV R P + + C A N
Sbjct: 29 CQATGEPKPR-ITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 87
Query: 93 QGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKK 152
G T V++ E + P P+ I +G L V+ +G C NP +
Sbjct: 88 LGEINTSAKLSVLE--EDQLPSGFPT--IDMGPQLK--VVEKGRTATMLCAAGGNPD-PE 140
Query: 153 LIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210
+ W + + + AS GRI + + L ++S G Y C A NS G S P +L +
Sbjct: 141 ISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 200
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS--------AGRIITNQTLVLQSVTRH 185
EG + +C I A PP KL W N + N GR+ TL+++ V +
Sbjct: 29 EGDSVKLECQISAIPP-PKLFWKRNNEMVQFNTDRISLYQDNTGRV----TLLIKDVNKK 83
Query: 186 SGGLYACSAINSQG 199
G Y SA+N G
Sbjct: 84 DAGWYTVSAVNEAG 97
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 11/181 (6%)
Query: 34 CTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS-ELEYGTLLCWARNE 92
C P+ + TW + + DG+ SV R P + + C A N
Sbjct: 28 CQATGEPKPR-ITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 86
Query: 93 QGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKK 152
G T V++ E + P PS I +G L V+ + C NP +
Sbjct: 87 LGEINTSAKLSVLE--EEQLPPGFPS--IDMGPQLK--VVEKARTATMLCAAGGNPD-PE 139
Query: 153 LIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210
+ W + + + S GRI + + L ++S G Y C A NS G S P +L +
Sbjct: 140 ISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 199
Query: 211 N 211
Sbjct: 200 R 200
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 38/219 (17%)
Query: 58 PLTSYS-IQDG-----STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECE 111
P+ + S ++DG S SV R + + G C+ RN++ + + G +
Sbjct: 371 PIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL--GGRFD 428
Query: 112 HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA--SAG 169
PV + + Q + G ++ C NP ++ W +G I+NN G
Sbjct: 429 PPVIRQAFQ--------EETMEPGPSVFLKCVAGGNP-TPEISWELDGKKIANNDRYQVG 479
Query: 170 RIIT-NQTLV----LQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEP 224
+ +T N +V + SV + GGLY C A + G + LN+ + P
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA-KLNVYGL----------P 528
Query: 225 VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNN 263
+Q +++ + E ++V+C V P W +N
Sbjct: 529 YIRQMEKK--AIVAGETLIVTCPVAGYP-IDSIVWERDN 564
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 21/134 (15%)
Query: 83 GTLLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
G C ARN G+Q+ TP +V E P DK Q G D
Sbjct: 690 GNFTCHARNLAGHQQFTTPLNVYVPPRWILE-PTDKAFAQ--------------GSDAKV 734
Query: 141 DCHIQANPP----YKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN 196
+C P +KK + G S + TL + ++ + + G Y C AIN
Sbjct: 735 ECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN 794
Query: 197 SQGEGGSTPFDLNI 210
G G S +++
Sbjct: 795 GIGSGLSAVIMISV 808
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 125 RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR 184
++ NA+ G ++ F C +P + W NG I N +N L ++++
Sbjct: 104 KSFNATA-ERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIIN 161
Query: 185 HSGGLYACSAINSQGEGGSTPF 206
GG Y C A N GE F
Sbjct: 162 SDGGPYVCRATNKAGEDEKQAF 183
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 125 RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR 184
++ NA+ G ++ F C +P + W NG I N +N L ++++
Sbjct: 200 KSFNATA-ERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIIN 257
Query: 185 HSGGLYACSAINSQGEGGSTPF 206
GG Y C A N GE F
Sbjct: 258 SDGGPYVCRATNKAGEDEKQAF 279
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 125 RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR 184
++ NA+ G ++ F C +P + W NG I N +N L ++++
Sbjct: 10 KSFNATA-ERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIIN 67
Query: 185 HSGGLYACSAINSQGEGGSTPF 206
GG Y C A N GE F
Sbjct: 68 SDGGPYVCRATNKAGEDEKQAF 89
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 86/232 (37%), Gaps = 37/232 (15%)
Query: 32 VSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 91
+SC +NP AQY +W L +IQ + + + +E G C A N
Sbjct: 401 LSCHAASNPPAQY-SW-----------LIDGNIQQHTQELF-ISNITEKNSGLYTCQANN 447
Query: 92 E-QGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY 150
G+ RT VK + KPS+ N+ + + + F C +A
Sbjct: 448 SASGHSRT-----TVKTITVSAELPKPSISSN-----NSKPVEDKDAVAFTCEPEAQ--N 495
Query: 151 KKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210
+W NG ++ + N+TL L +VTR+ Y C NS S P L+
Sbjct: 496 TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLD- 554
Query: 211 NKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN 262
+ D P+ L + +SC +NP QY +W N
Sbjct: 555 ------VLYGPDTPIISPPDS---SYLSGANLNLSCHSASNPSPQY-SWRIN 596
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRI 233
N+TL L SVTR+ G Y C N S P LN + D+P S
Sbjct: 341 NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN-------VLYGPDDPTISPSYTYY 393
Query: 234 YGALRNEQVLVSCTVDANPQAQYFTWAFN 262
+ + +SC +NP AQY +W +
Sbjct: 394 RPGV---NLSLSCHAASNPPAQY-SWLID 418
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSV 182
L + V+ EG F+ HI P ++ W +G IS + G I+ L + +V
Sbjct: 12 LQSVVVLEGSTATFEAHISGFP-VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 183 TRHSGGLYACSAINSQGEGGST 204
T+ + G Y+ A N G+ ST
Sbjct: 71 TKANSGRYSLKATNGSGQATST 92
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSV 182
L + V+ EG F+ HI P ++ W +G IS + G I+ L + +V
Sbjct: 12 LQSVVVLEGSTATFEAHISGFP-VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 183 TRHSGGLYACSAINSQGEGGST 204
T+ + G Y+ A N G+ ST
Sbjct: 71 TKANSGRYSLKATNGSGQATST 92
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 17/187 (9%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
AL E C V++ PQ + +W N T YSI++ + + + + G
Sbjct: 19 ALVEEVATFMCAVESYPQPE-ISWTRNKILIKLFD-TRYSIRENGQLLTILS-VEDSDDG 75
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
C A N G C VK + + +P + +K+ EG+ C
Sbjct: 76 IYCCTANNGVGGAVESCGALQVKM---KPKITRPPINVKI---------IEGLKAVLPCT 123
Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS 203
NP + W + N+ ++ + +L + +V + G Y C A NS G S
Sbjct: 124 TMGNP-KPSVSWIKGDSALRENSRIA-VLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYS 181
Query: 204 TPFDLNI 210
L +
Sbjct: 182 KLVKLEV 188
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 23/179 (12%)
Query: 152 KLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
+L+ +N IT S + T + +SVTR G Y C EGG++ ++ +
Sbjct: 47 RLVCYNNKITASYEDRVTFLPTG--ITFKSVTREDTGTYTCMV---SEEGGNSYGEVKV- 100
Query: 212 KMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS---DTAP 268
K++ L+ S +P G N VL D +P ++Y TW F + T P
Sbjct: 101 KLIVLVPPS--KPTVNIPSSATIG---NRAVLTCSEQDGSPPSEY-TW-FKDGIVMPTNP 153
Query: 269 RPLTSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECE 323
+ ++S + + +T + P S + G C ARN G TP T + V+ E
Sbjct: 154 KSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG---TPMTSNAVRMEAVE 209
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS-GGLYACSA 194
+D+ C ANPP + WT T++ + G N+TL + +S G Y C A
Sbjct: 233 MDVKLTCKADANPPATEYHWT----TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA 288
Query: 195 INSQG 199
N G
Sbjct: 289 TNPIG 293
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS-GGLYACSA 194
+D+ C ANPP + WT T++ + G N+TL + +S G Y C A
Sbjct: 248 MDVKLTCKADANPPATEYHWT----TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA 303
Query: 195 INSQG 199
N G
Sbjct: 304 TNPIG 308
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS-GGLYACSA 194
+D+ C ANPP + WT T++ + G N+TL + +S G Y C A
Sbjct: 233 MDVKLTCKADANPPATEYHWT----TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA 288
Query: 195 INSQG 199
N G
Sbjct: 289 TNPIG 293
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS-GGLYACSA 194
+D+ C ANPP + WT T++ + G N+TL + +S G Y C A
Sbjct: 234 MDVKLTCKADANPPATEYHWT----TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA 289
Query: 195 INSQG 199
N G
Sbjct: 290 TNPIG 294
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 299
EQVL++C A+P A Y W N ++ P + + + G+ + PT + G C
Sbjct: 22 EQVLLACRARASPPATY-RWKMNGTEMKLEPGSRHQLVGGNLVI--MNPTKAQDAGVYQC 78
Query: 300 WARNEQGS 307
A N G+
Sbjct: 79 LASNPVGT 86
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87
EQVL++C A+P A Y W N + P + + + G+ + PT + G C
Sbjct: 22 EQVLLACRARASPPATY-RWKMNGTEMKLEPGSRHQLVGGNLVI--MNPTKAQDAGVYQC 78
Query: 88 WARNEQG 94
A N G
Sbjct: 79 LASNPVG 85
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain
Of Nectin-1
Length = 95
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 137 DIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQS-VTRHSGGLYACSAI 195
D+ C ANPP + WT T++ + G N+TL + +T G Y C A
Sbjct: 24 DVKLTCKADANPPATEYHWT----TLNGSLPKGVEAQNRTLFFRGPITYSLAGTYICEAT 79
Query: 196 NSQG 199
N G
Sbjct: 80 NPIG 83
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 126 NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRH 185
NL + G I C NPP +++W + T+ ++ N+ L ++ V +
Sbjct: 16 NLENQTTSIGESIEVSCTASGNPP-PQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE 74
Query: 186 SGGLYACSAINSQG 199
GLY C A + G
Sbjct: 75 DEGLYTCQACSVLG 88
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQG 199
C NP ++ W + + + +AS GRI + + L ++S G Y C A NS G
Sbjct: 130 CAASGNP-DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Query: 200 EGGSTPFDLNI 210
S+P +L +
Sbjct: 189 VRYSSPANLYV 199
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 126 NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRH 185
NL + G I C NPP +++W + T+ ++ N+ L ++ V +
Sbjct: 672 NLENQTTSIGESIEVSCTASGNPP-PQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE 730
Query: 186 SGGLYACSAINSQG 199
GLY C A + G
Sbjct: 731 DEGLYTCQACSVLG 744
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQG 199
C NP ++ W + + + +AS GRI + + L ++S G Y C A NS G
Sbjct: 130 CAASGNP-DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Query: 200 EGGSTPFDLNI 210
S+P +L +
Sbjct: 189 VRYSSPANLYV 199
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQG 199
C NP ++ W + + + +AS GRI + + L ++S G Y C A NS G
Sbjct: 130 CAASGNP-DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Query: 200 EGGSTPFDLNI 210
S+P +L +
Sbjct: 189 VRYSSPANLYV 199
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
P V + G + N V +GV++ C+ ANPP K +W+ + G + ++ T
Sbjct: 212 PEVSVT-GYDGNWFVGRKGVNL--KCNADANPPPFKSVWSR----LDGQWPDGLLASDNT 264
Query: 177 L-VLQSVTRHSGGLYACSAINSQGE 200
L + +T + G+Y C NS G+
Sbjct: 265 LHFVHPLTFNYSGVYICKVTNSLGQ 289
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 132 LNEGVDIYFDCHIQANPPYKKLIWT--HNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
+ G D+ F C ++ P L+WT HNG S I+T +++V G
Sbjct: 22 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILT-----IRNVQPSDAGT 76
Query: 190 YACSAIN 196
Y C+ N
Sbjct: 77 YVCTGSN 83
>pdb|1F3J|B Chain B, Histocompatibility Antigen I-Ag7
pdb|1F3J|E Chain E, Histocompatibility Antigen I-Ag7
Length = 187
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 114 VDKPSVQIKLGR----NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG 169
+++P+V I L R N + +++ D Y P K+ W NG + S+
Sbjct: 90 LEQPNVAISLSRTEALNHHNTLVCSVTDFY--------PAKIKVRWFRNGQEETVGVSST 141
Query: 170 RIITN-----QTLVLQSVTRHSGGLYAC 192
++I N Q LV+ +T H G +Y C
Sbjct: 142 QLIRNGDWTFQVLVMLEMTPHQGEVYTC 169
>pdb|3MBE|B Chain B, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|F Chain F, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 201
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 114 VDKPSVQIKLGR----NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG 169
+++P+V I L R N + +++ D Y P K+ W NG + S+
Sbjct: 99 LEQPNVAISLSRTEALNHHNTLVCSVTDFY--------PAKIKVRWFRNGQEETVGVSST 150
Query: 170 RIITN-----QTLVLQSVTRHSGGLYAC 192
++I N Q LV+ +T H G +Y C
Sbjct: 151 QLIRNGDWTFQVLVMLEMTPHQGEVYTC 178
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 82/246 (33%), Gaps = 46/246 (18%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
E+V ++C ANP A Y W N + P + Y + G ++ P + G+
Sbjct: 22 EEKVTLTCRARANPPATY-RWKMNGTELKMGPDSRYRLVAGDLVIS--NPVKAKDAGSYQ 78
Query: 87 CWARNEQG---NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
C A N +G ++ F ++ E ++ V+I EG + F C
Sbjct: 79 CVATNARGTVVSREASLRFGFLQEFSAE---ERDPVKI-----------TEGWGVMFTCS 124
Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQT--LVLQSVTRHSGGLYACSAINSQGEG 201
+ P W N A R ++ T L + G Y+C A +
Sbjct: 125 PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS----- 179
Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG------------ALRNEQVLVSCTVD 249
+I+ + +F+ + R Y AL + V + C
Sbjct: 180 -------HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF 232
Query: 250 ANPQAQ 255
NP Q
Sbjct: 233 GNPVPQ 238
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
E +DI F+C + P + W NG + + +I+ L + V + G Y C
Sbjct: 326 ESMDIEFECAVSGKP-VPTVNWMKNGDVVIP-SDYFQIVGGSNLRILGVVKSDEGFYQCV 383
Query: 194 AINSQGEGGST 204
A N G S+
Sbjct: 384 AENEAGNAQSS 394
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 33/175 (18%)
Query: 149 PYKKLIWTH--NGITISNNASA--GRIIT-----NQTLVLQSVTRHSGGLYACSAINSQG 199
P ++ W +G T + + GRI + +L ++ V G Y C A + G
Sbjct: 28 PIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 87
Query: 200 EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW 259
G L+I I N Q IY + + +SC V +NP A W
Sbjct: 88 -GHQKSMYLDIEYAPKFISN-----------QTIYYSWEGNPINISCDVKSNPPAS-IHW 134
Query: 260 AFNNSDTAPRP------LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ 308
D P L +YS G + PTS+ ++G C A N G++
Sbjct: 135 ---RRDKLVLPAKNTTNLKTYST--GRKMILEIAPTSDNDFGRYNCTATNHIGTR 184
>pdb|1ES0|B Chain B, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
Length = 221
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 114 VDKPSVQIKLGR----NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG 169
+++P+V I L R N + +++ D Y P K+ W NG + S+
Sbjct: 119 LEQPNVAISLSRTEALNHHNTLVCSVTDFY--------PAKIKVRWFRNGQEETVGVSST 170
Query: 170 RIITN-----QTLVLQSVTRHSGGLYAC 192
++I N Q LV+ +T H G +Y C
Sbjct: 171 QLIRNGDWTFQVLVMLEMTPHQGEVYTC 198
>pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
Length = 222
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 114 VDKPSVQIKLGR----NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG 169
+++P+V I L R N + +++ D Y P K+ W NG + S+
Sbjct: 120 LEQPNVAISLSRTEALNHHNTLVCSVTDFY--------PAKIKVRWFRNGQEETVGVSST 171
Query: 170 RIITN-----QTLVLQSVTRHSGGLYAC 192
++I N Q LV+ +T H G +Y C
Sbjct: 172 QLIRNGDWTFQVLVMLEMTPHQGEVYTC 199
>pdb|2IAD|B Chain B, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 205
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 114 VDKPSVQIKLGR----NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG 169
+++P+V I L R N + +++ D Y P K+ W NG + S+
Sbjct: 109 LEQPNVAISLSRTEALNHHNTLVCSVTDFY--------PAKIKVRWFRNGQEETVGVSST 160
Query: 170 RIITN-----QTLVLQSVTRHSGGLYAC 192
++I N Q LV+ +T H G +Y C
Sbjct: 161 QLIRNGDWTFQVLVMLEMTPHQGEVYTC 188
>pdb|3CUP|B Chain B, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
Length = 222
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 114 VDKPSVQIKLGR----NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG 169
+++P+V I L R N + +++ D Y P K+ W NG + S+
Sbjct: 120 LEQPNVAISLSRTEALNHHNTLVCSVTDFY--------PAKIKVRWFRNGQEETVGVSST 171
Query: 170 RIITN-----QTLVLQSVTRHSGGLYAC 192
++I N Q LV+ +T H G +Y C
Sbjct: 172 QLIRNGDWTFQVLVMLEMTPHQGEVYTC 199
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 24/139 (17%)
Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
+L ++ V G Y C A + G G L+I I S Q IY
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFI-----------SNQTIYY 111
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP------LTSYSIQDGSTSVARYTPT 289
+ + +SC V +NP A W D P L +YS G + PT
Sbjct: 112 SWEGNPINISCDVKSNPPAS-IHW---RRDKLVLPAKNTTNLKTYST--GRKMILEIAPT 165
Query: 290 SELEYGTLLCWARNEQGSQ 308
S+ ++G C A N G++
Sbjct: 166 SDNDFGRYNCTATNHIGTR 184
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 140 FDCHIQANPPYKKLIWTHNGITI--SNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS 197
F CH+ P K + W + I N + TL + VT+ G Y C A N
Sbjct: 25 FKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83
Query: 198 QGE 200
G+
Sbjct: 84 AGK 86
>pdb|4GQ7|A Chain A, Crystal Structure Of Lg-flo1p
Length = 224
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN 147
W+ + G TP V G P S K ++++L+ G I F+C Q
Sbjct: 74 WSSDLFGFYTTPTNVTVEMTGYFLPP-QTGSYTFKFATVDDSAILSVGGSIAFECCAQEQ 132
Query: 148 PPYKKLIWTHNGI 160
PP +T NGI
Sbjct: 133 PPITSTDFTINGI 145
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 140 FDCHIQANPPYKKLIWTHNGITI--SNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS 197
F CH+ P K + W + I N + TL + VT+ G Y C A N
Sbjct: 25 FKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83
Query: 198 QGE 200
G+
Sbjct: 84 AGK 86
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 149 PYKKLIWTHNGITISNNASAGRIITNQ---TLVLQSVTRHSGGLYACSAINSQGEGGST 204
P + W NG T+ ++ I++ + +L+ + V G YAC A N GE T
Sbjct: 33 PAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT 91
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 110/288 (38%), Gaps = 39/288 (13%)
Query: 26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
R + +++ C + + W FN + S + G+ +A+ + + G
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAK---VEKSDVGNY 172
Query: 86 LCWARNEQGNQRT--PCTFHVVK----AGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
C N N + P T +++ GE E P ++++ + A +G +
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE-----PKIEVQFPETVPAE---KGTTVK 224
Query: 140 FDCHIQANPPYKKLIWTH-NGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ 198
+C NP ++W +G I+ A R +N L + + + G Y C A NS+
Sbjct: 225 LECFALGNP-VPTILWRRADGKPIARKAR--RHKSNGILEIPNFQQEDAGSYECVAENSR 281
Query: 199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258
G+ N+ K L F + +P Q I+ A+ E V C + P+ Y
Sbjct: 282 GK--------NVAKG-QLTFYA--QPNWVQIINDIHVAME-ESVFWECKANGRPKPTY-R 328
Query: 259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 306
W N R I+ G+ ++ T + + G C A N+ G
Sbjct: 329 WLKNGDPLLTR--DRIQIEQGTLNI---TIVNLSDAGMYQCVAENKHG 371
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 140 FDCHIQANPPYKKLIWTHNGITI--SNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS 197
F CH+ P K + W + I N + TL + VT+ G Y C A N
Sbjct: 217 FKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 275
Query: 198 QGE 200
G+
Sbjct: 276 AGK 278
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 110/288 (38%), Gaps = 39/288 (13%)
Query: 26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
R + +++ C + + W FN + S + G+ +A+ + + G
Sbjct: 115 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAK---VEKSDVGNY 171
Query: 86 LCWARNEQGNQRT--PCTFHVVK----AGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
C N N + P T +++ GE E P ++++ + A +G +
Sbjct: 172 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE-----PKIEVQFPETVPAE---KGTTVK 223
Query: 140 FDCHIQANPPYKKLIWTH-NGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ 198
+C NP ++W +G I+ A R +N L + + + G Y C A NS+
Sbjct: 224 LECFALGNP-VPTILWRRADGKPIARKAR--RHKSNGILEIPNFQQEDAGSYECVAENSR 280
Query: 199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258
G+ N+ K L F + +P Q I+ A+ E V C + P+ Y
Sbjct: 281 GK--------NVAKG-QLTFYA--QPNWVQIINDIHVAME-ESVFWECKANGRPKPTY-R 327
Query: 259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 306
W N R I+ G+ ++ T + + G C A N+ G
Sbjct: 328 WLKNGDPLLTR--DRIQIEQGTLNI---TIVNLSDAGMYQCVAENKHG 370
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN---QTLVLQSVTRHSGG 188
+ EG DC + + P L W +G + +++ ++ +L+++ VT G
Sbjct: 21 VQEGKLCRMDCKV-SGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAG 79
Query: 189 LYACSAINSQGE 200
+Y C A N G+
Sbjct: 80 IYTCIATNRAGQ 91
>pdb|3U46|L Chain L, Ch04hCH02L P212121
pdb|3U46|B Chain B, Ch04hCH02L P212121
pdb|3U4B|L Chain L, Ch04hCH02L FAB P4
Length = 215
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA 72
E+ +SC N +YF W G +PR L I GST A
Sbjct: 16 GERATLSCRASQNVHPRYFAWYQQKRGQSPRLL----IHSGSTRAA 57
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQG 199
C NP ++ W + + + + S GRI + + L ++S G Y C A NS G
Sbjct: 130 CAASGNP-DPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAG 188
Query: 200 EGGSTPFDLNI 210
S+P +L +
Sbjct: 189 VRYSSPANLYV 199
>pdb|1IKP|A Chain A, Pseudomonas Aeruginosa Exotoxin A, P201q, W281a Mutant
Length = 613
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 105 VKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH 157
V AGEC P D ++ A L +G D+ F N ++L+ H
Sbjct: 374 VAAGECAGPADSGDALLERNYPTGAEFLGDGGDVSFSTRGTQNWTVERLLQAH 426
>pdb|3PFE|A Chain A, Crystal Structure Of A M20a Metallo Peptidase (Dape,
Lpg0809) From Legionella Pneumophila Subsp. Pneumophila
Str. Philadelphia 1 At 1.50 A Resolution
Length = 472
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT 173
V +P +KL L V E + + + NPPY + I N S G
Sbjct: 329 VXRPVTSLKLSXRLPPLVDPEAASVAXEKALTQNPPYNAKV----DFKIQNGGSKGWNAP 384
Query: 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
+ L + Y GEGG+ PF
Sbjct: 385 LLSDWLAKAASEASXTYYDKPAAYXGEGGTIPF 417
>pdb|1IKQ|A Chain A, Pseudomonas Aeruginosa Exotoxin A, Wild Type
Length = 613
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 105 VKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH 157
V AGEC P D ++ A L +G D+ F N ++L+ H
Sbjct: 374 VAAGECAGPADSGDALLERNYPTGAEFLGDGGDVSFSTRGTQNWTVERLLQAH 426
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 177 LVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
++++SV R L +++ +G+ S F L + + PV S+ Y
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV------PVVSVSKAS-YL 222
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVAR---YTPTSEL 292
E+ V+CT+ + Y TW NS T + + S G + R T +S
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN-SWHHGDFNYERQATLTISSAR 281
Query: 293 --EYGTLLCWARNEQGSQRTPCTFHVVKAG 320
+ G +C+A N GS T VV G
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVVDKG 311
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 177 LVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
++++SV R L +++ +G+ S F L + + PV S+ Y
Sbjct: 145 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV------PVVSVSKAS-YL 197
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVAR---YTPTSEL 292
E+ V+CT+ + Y TW NS T + + S G + R T +S
Sbjct: 198 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN-SWHHGDFNYERQATLTISSAR 256
Query: 293 --EYGTLLCWARNEQGSQRTPCTFHVVKAG 320
+ G +C+A N GS T VV G
Sbjct: 257 VNDSGVFMCYANNTFGSANVTTTLEVVDKG 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,039,306
Number of Sequences: 62578
Number of extensions: 461801
Number of successful extensions: 1352
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 97
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)