Query psy3823
Match_columns 365
No_of_seqs 165 out of 2108
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:17:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 7.3E-39 1.6E-43 304.5 31.6 280 8-321 237-518 (1051)
2 KOG3513|consensus 100.0 6.6E-32 1.4E-36 257.4 25.9 316 3-348 323-703 (1051)
3 KOG4221|consensus 100.0 1.9E-30 4.1E-35 246.6 27.4 308 17-354 145-519 (1381)
4 KOG4194|consensus 100.0 4.2E-28 9.2E-33 216.2 22.3 290 18-339 509-818 (873)
5 PHA02785 IL-beta-binding prote 100.0 3.2E-27 7E-32 209.0 24.7 259 20-309 34-319 (326)
6 KOG4222|consensus 99.9 7.4E-26 1.6E-30 214.4 19.7 304 16-355 135-510 (1281)
7 KOG4221|consensus 99.9 2.3E-24 5E-29 205.5 25.1 268 25-321 52-330 (1381)
8 KOG4222|consensus 99.9 2.3E-24 5E-29 204.4 17.8 305 18-351 231-616 (1281)
9 PHA02826 IL-1 receptor-like pr 99.8 1.1E-19 2.4E-24 151.4 14.3 159 19-198 29-211 (227)
10 KOG4194|consensus 99.8 3E-19 6.5E-24 160.1 15.8 179 18-211 618-796 (873)
11 PHA02826 IL-1 receptor-like pr 99.8 1.3E-17 2.7E-22 139.1 16.2 156 130-307 32-213 (227)
12 PHA02785 IL-beta-binding prote 99.7 1.7E-16 3.7E-21 140.8 18.6 162 22-201 131-318 (326)
13 cd05762 Ig8_MLCK Eighth immuno 99.6 4.1E-14 8.9E-19 102.5 11.7 83 235-319 11-93 (98)
14 cd05762 Ig8_MLCK Eighth immuno 99.6 3.6E-14 7.9E-19 102.8 10.7 85 18-104 6-90 (98)
15 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 5.4E-14 1.2E-18 99.3 11.2 81 235-316 6-86 (86)
16 cd05737 Ig_Myomesin_like_C C-t 99.5 1.3E-13 2.7E-18 99.0 10.7 87 16-104 5-92 (92)
17 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1.4E-13 3E-18 97.2 10.4 83 20-104 3-86 (86)
18 cd05745 Ig3_Peroxidasin Third 99.5 6.7E-14 1.4E-18 96.1 7.9 74 26-104 1-74 (74)
19 KOG3515|consensus 99.5 5.4E-13 1.2E-17 125.6 16.0 309 12-351 8-337 (741)
20 cd05737 Ig_Myomesin_like_C C-t 99.5 2.6E-13 5.6E-18 97.4 10.9 81 234-316 11-92 (92)
21 cd04975 Ig4_SCFR_like Fourth i 99.5 2.8E-13 6.1E-18 98.2 10.5 85 18-104 9-99 (101)
22 cd05851 Ig3_Contactin-1 Third 99.5 3.5E-13 7.7E-18 95.6 10.6 81 18-104 7-87 (88)
23 cd05747 Ig5_Titin_like M5, fif 99.5 3E-13 6.6E-18 97.1 10.2 88 12-102 4-91 (92)
24 cd04975 Ig4_SCFR_like Fourth i 99.5 4.7E-13 1E-17 97.1 11.1 82 234-317 13-100 (101)
25 cd05852 Ig5_Contactin-1 Fifth 99.5 1.7E-13 3.7E-18 93.3 8.3 73 27-104 1-73 (73)
26 cd05851 Ig3_Contactin-1 Third 99.5 5.6E-13 1.2E-17 94.6 11.0 87 224-317 2-88 (88)
27 cd05892 Ig_Myotilin_C C-termin 99.5 2.7E-13 5.9E-18 92.6 8.7 74 242-316 1-75 (75)
28 cd05893 Ig_Palladin_C C-termin 99.5 3.5E-13 7.6E-18 92.2 9.0 74 242-316 1-75 (75)
29 cd05735 Ig8_DSCAM Eight immuno 99.5 7.9E-13 1.7E-17 93.8 10.8 81 239-320 1-85 (88)
30 cd05747 Ig5_Titin_like M5, fif 99.5 8.6E-13 1.9E-17 94.7 11.1 90 222-314 2-91 (92)
31 cd05730 Ig3_NCAM-1_like Third 99.5 8.2E-13 1.8E-17 95.5 11.0 81 235-318 14-94 (95)
32 cd05869 Ig5_NCAM-1 Fifth immun 99.5 1.4E-12 3E-17 94.6 12.0 92 223-316 2-97 (97)
33 cd05771 IgC_Tapasin_R Tapasin- 99.5 2.7E-12 5.9E-17 99.7 13.8 117 71-200 2-133 (139)
34 PF07679 I-set: Immunoglobulin 99.4 8.2E-13 1.8E-17 94.6 9.8 89 225-316 2-90 (90)
35 cd04972 Ig_TrkABC_d4 Fourth do 99.4 8.6E-13 1.9E-17 94.3 9.8 82 21-104 9-90 (90)
36 cd05745 Ig3_Peroxidasin Third 99.4 4.4E-13 9.5E-18 92.0 7.8 74 238-316 1-74 (74)
37 cd05740 Ig_CEACAM_D4 Fourth im 99.4 6E-13 1.3E-17 94.9 8.5 79 129-210 12-90 (91)
38 cd04968 Ig3_Contactin_like Thi 99.4 1.3E-12 2.8E-17 93.0 10.2 84 15-104 4-87 (88)
39 cd05891 Ig_M-protein_C C-termi 99.4 1.1E-12 2.5E-17 93.8 9.8 86 17-104 6-92 (92)
40 cd05867 Ig4_L1-CAM_like Fourth 99.4 1.4E-12 3.1E-17 89.9 9.8 76 239-317 1-76 (76)
41 cd05852 Ig5_Contactin-1 Fifth 99.4 7.5E-13 1.6E-17 90.1 8.2 73 239-316 1-73 (73)
42 cd05859 Ig4_PDGFR-alpha Fourth 99.4 1.2E-12 2.5E-17 95.2 9.5 81 236-317 15-100 (101)
43 cd05773 Ig8_hNephrin_like Eigh 99.4 3.2E-12 6.9E-17 94.5 12.0 95 8-104 1-104 (109)
44 PF07679 I-set: Immunoglobulin 99.4 8.7E-13 1.9E-17 94.5 8.6 84 19-104 7-90 (90)
45 cd05863 Ig2_VEGFR-3 Second imm 99.4 8.7E-13 1.9E-17 87.6 7.9 66 242-317 1-66 (67)
46 cd04969 Ig5_Contactin_like Fif 99.4 8.2E-13 1.8E-17 90.4 8.0 73 27-104 1-73 (73)
47 cd05748 Ig_Titin_like Immunogl 99.4 1.9E-12 4.1E-17 88.9 9.8 74 241-316 1-74 (74)
48 cd05732 Ig5_NCAM-1_like Fifth 99.4 3.4E-12 7.4E-17 92.5 11.6 80 236-316 13-96 (96)
49 cd05744 Ig_Myotilin_C_like Imm 99.4 1.8E-12 4E-17 88.9 9.4 74 242-316 1-75 (75)
50 cd05735 Ig8_DSCAM Eight immuno 99.4 2.3E-12 5E-17 91.4 10.2 76 27-104 1-81 (88)
51 cd05857 Ig2_FGFR Second immuno 99.4 1.4E-12 3.1E-17 92.2 9.2 82 21-104 3-85 (85)
52 cd05866 Ig1_NCAM-2 First immun 99.4 2.7E-12 5.9E-17 91.3 10.6 79 236-316 12-91 (92)
53 cd05870 Ig5_NCAM-2 Fifth immun 99.4 2.5E-12 5.4E-17 93.4 10.7 91 223-316 2-98 (98)
54 cd05891 Ig_M-protein_C C-termi 99.4 2.7E-12 5.9E-17 91.9 10.7 80 235-316 12-92 (92)
55 cd05748 Ig_Titin_like Immunogl 99.4 1.5E-12 3.3E-17 89.4 8.8 74 29-104 1-74 (74)
56 cd04972 Ig_TrkABC_d4 Fourth do 99.4 3.3E-12 7.2E-17 91.3 10.8 79 236-316 12-90 (90)
57 cd05868 Ig4_NrCAM Fourth immun 99.4 2.2E-12 4.7E-17 88.8 9.4 75 239-316 1-75 (76)
58 cd05865 Ig1_NCAM-1 First immun 99.4 2.2E-12 4.8E-17 92.7 9.6 84 19-104 7-95 (96)
59 cd05867 Ig4_L1-CAM_like Fourth 99.4 2E-12 4.3E-17 89.2 9.0 74 135-210 1-75 (76)
60 cd05730 Ig3_NCAM-1_like Third 99.4 2E-12 4.3E-17 93.5 9.3 83 19-104 10-92 (95)
61 cd05857 Ig2_FGFR Second immuno 99.4 1.9E-12 4.2E-17 91.5 9.0 80 236-316 6-85 (85)
62 cd05892 Ig_Myotilin_C C-termin 99.4 1.1E-12 2.4E-17 89.6 7.3 73 30-104 1-75 (75)
63 cd05870 Ig5_NCAM-2 Fifth immun 99.4 5.4E-12 1.2E-16 91.7 11.1 90 11-104 2-98 (98)
64 cd05723 Ig4_Neogenin Fourth im 99.4 3.6E-12 7.7E-17 86.6 9.3 71 241-316 1-71 (71)
65 cd05773 Ig8_hNephrin_like Eigh 99.4 5.5E-12 1.2E-16 93.3 11.1 98 222-320 3-108 (109)
66 cd05865 Ig1_NCAM-1 First immun 99.4 5.2E-12 1.1E-16 90.8 10.5 80 236-316 12-95 (96)
67 cd05740 Ig_CEACAM_D4 Fourth im 99.4 3.8E-12 8.3E-17 90.7 9.7 80 19-104 10-90 (91)
68 cd05850 Ig1_Contactin-2 First 99.4 5.6E-12 1.2E-16 90.7 10.3 75 134-209 18-93 (94)
69 cd05859 Ig4_PDGFR-alpha Fourth 99.4 3.3E-12 7.2E-17 92.8 9.2 82 21-104 12-99 (101)
70 cd05723 Ig4_Neogenin Fourth im 99.4 2.2E-12 4.7E-17 87.7 7.7 71 29-104 1-71 (71)
71 cd05854 Ig6_Contactin-2 Sixth 99.4 6.7E-12 1.5E-16 88.3 10.4 80 240-319 1-84 (85)
72 cd05863 Ig2_VEGFR-3 Second imm 99.4 1.3E-12 2.7E-17 86.9 6.2 65 30-104 1-65 (67)
73 cd04978 Ig4_L1-NrCAM_like Four 99.4 4.4E-12 9.6E-17 87.6 9.3 76 239-317 1-76 (76)
74 cd05866 Ig1_NCAM-2 First immun 99.4 4E-12 8.7E-17 90.5 9.2 84 18-104 6-91 (92)
75 cd05869 Ig5_NCAM-1 Fifth immun 99.4 8.9E-12 1.9E-16 90.3 11.2 79 24-104 14-97 (97)
76 cd04968 Ig3_Contactin_like Thi 99.4 5.8E-12 1.2E-16 89.6 10.0 75 236-316 13-87 (88)
77 cd05743 Ig_Perlecan_D2_like Im 99.4 3.6E-12 7.7E-17 88.4 8.7 69 27-97 1-69 (78)
78 cd05771 IgC_Tapasin_R Tapasin- 99.4 1.5E-11 3.2E-16 95.6 13.2 119 176-306 2-132 (139)
79 cd05763 Ig_1 Subgroup of the i 99.4 2.6E-12 5.6E-17 88.4 7.9 74 242-316 1-74 (75)
80 cd05732 Ig5_NCAM-1_like Fifth 99.4 7E-12 1.5E-16 90.9 10.4 84 19-104 8-96 (96)
81 cd04973 Ig1_FGFR First immunog 99.4 6.7E-12 1.4E-16 87.2 9.8 78 20-104 2-79 (79)
82 cd05743 Ig_Perlecan_D2_like Im 99.4 8.3E-12 1.8E-16 86.5 10.2 75 239-315 1-75 (78)
83 cd05724 Ig2_Robo Second immuno 99.4 4.1E-12 8.8E-17 90.1 8.6 79 130-209 6-85 (86)
84 cd04969 Ig5_Contactin_like Fif 99.4 4.2E-12 9.2E-17 86.8 8.3 73 239-316 1-73 (73)
85 cd05893 Ig_Palladin_C C-termin 99.4 2.9E-12 6.4E-17 87.6 7.5 73 30-104 1-75 (75)
86 cd07693 Ig1_Robo First immunog 99.4 7.5E-12 1.6E-16 91.5 10.2 81 129-210 10-99 (100)
87 cd05848 Ig1_Contactin-5 First 99.4 7.9E-12 1.7E-16 89.8 10.0 74 134-208 18-92 (94)
88 cd05868 Ig4_NrCAM Fourth immun 99.4 4.4E-12 9.6E-17 87.3 8.2 74 27-104 1-75 (76)
89 cd05876 Ig3_L1-CAM Third immun 99.4 4E-12 8.8E-17 86.3 7.8 70 30-104 1-70 (71)
90 cd04978 Ig4_L1-NrCAM_like Four 99.4 3.1E-12 6.7E-17 88.4 7.3 75 27-104 1-75 (76)
91 cd05728 Ig4_Contactin-2-like F 99.3 4.2E-12 9E-17 89.6 7.9 81 18-104 5-85 (85)
92 cd05724 Ig2_Robo Second immuno 99.3 1.6E-11 3.4E-16 87.1 10.5 81 18-103 2-85 (86)
93 cd05756 Ig1_IL1R_like First im 99.3 5.4E-12 1.2E-16 90.4 7.9 80 21-104 8-94 (94)
94 cd05744 Ig_Myotilin_C_like Imm 99.3 7.4E-12 1.6E-16 85.9 8.2 73 30-104 1-75 (75)
95 cd05764 Ig_2 Subgroup of the i 99.3 7.8E-12 1.7E-16 85.8 8.2 74 27-104 1-74 (74)
96 cd05876 Ig3_L1-CAM Third immun 99.3 8.1E-12 1.8E-16 84.8 8.2 70 242-316 1-70 (71)
97 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 9E-12 1.9E-16 85.4 8.4 72 138-210 1-73 (74)
98 cd07693 Ig1_Robo First immunog 99.3 1.8E-11 3.9E-16 89.5 10.5 91 224-316 2-99 (100)
99 cd05854 Ig6_Contactin-2 Sixth 99.3 1.2E-11 2.5E-16 87.1 8.8 75 136-211 1-82 (85)
100 cd05746 Ig4_Peroxidasin Fourth 99.3 4.8E-12 1E-16 85.4 6.6 68 30-102 1-68 (69)
101 cd05760 Ig2_PTK7 Second immuno 99.3 1.6E-11 3.6E-16 84.7 9.3 72 242-316 1-72 (77)
102 cd04977 Ig1_NCAM-1_like First 99.3 1.7E-11 3.7E-16 87.7 9.7 84 18-104 6-92 (92)
103 cd05752 Ig1_FcgammaR_like Frst 99.3 1E-11 2.2E-16 85.5 8.2 69 130-210 10-78 (78)
104 cd05764 Ig_2 Subgroup of the i 99.3 8.9E-12 1.9E-16 85.5 7.8 74 239-316 1-74 (74)
105 cd05758 Ig5_KIRREL3-like Fifth 99.3 2.5E-11 5.4E-16 88.2 10.6 79 236-314 13-97 (98)
106 cd05763 Ig_1 Subgroup of the i 99.3 9.3E-12 2E-16 85.6 7.7 74 30-104 1-74 (75)
107 cd05728 Ig4_Contactin-2-like F 99.3 1.4E-11 3E-16 86.9 8.6 77 129-209 8-84 (85)
108 cd05856 Ig2_FGFRL1-like Second 99.3 9.6E-12 2.1E-16 87.3 7.7 80 21-104 3-82 (82)
109 cd05856 Ig2_FGFRL1-like Second 99.3 2.8E-11 6.2E-16 84.9 10.1 77 236-316 6-82 (82)
110 cd04976 Ig2_VEGFR Second immun 99.3 1.5E-11 3.3E-16 83.4 8.3 70 242-317 1-70 (71)
111 cd05864 Ig2_VEGFR-2 Second imm 99.3 1.6E-11 3.5E-16 82.6 8.0 69 242-317 1-69 (70)
112 cd04970 Ig6_Contactin_like Six 99.3 2.4E-11 5.1E-16 85.8 9.1 80 240-319 1-84 (85)
113 cd05726 Ig4_Robo Fhird immunog 99.3 2.4E-11 5.2E-16 86.8 9.1 77 239-319 1-84 (90)
114 cd05898 Ig5_KIRREL3 Fifth immu 99.3 6.4E-11 1.4E-15 84.8 11.2 79 236-314 13-97 (98)
115 cd05725 Ig3_Robo Third immunog 99.3 1.6E-11 3.5E-16 82.9 7.8 69 30-104 1-69 (69)
116 cd04976 Ig2_VEGFR Second immun 99.3 1.2E-11 2.5E-16 83.9 7.0 69 30-104 1-69 (71)
117 cd05746 Ig4_Peroxidasin Fourth 99.3 1.2E-11 2.5E-16 83.5 6.8 68 242-314 1-68 (69)
118 cd05855 Ig_TrkB_d5 Fifth domai 99.3 2.5E-11 5.4E-16 83.3 8.5 70 32-103 3-77 (79)
119 cd05726 Ig4_Robo Fhird immunog 99.3 3.1E-11 6.6E-16 86.2 9.2 75 27-105 1-82 (90)
120 cd05760 Ig2_PTK7 Second immuno 99.3 3.3E-11 7.1E-16 83.2 8.9 73 138-211 1-75 (77)
121 cd05731 Ig3_L1-CAM_like Third 99.3 2.1E-11 4.5E-16 83.0 7.8 70 242-316 1-70 (71)
122 KOG3515|consensus 99.3 1.7E-10 3.7E-15 109.0 16.2 273 5-303 293-576 (741)
123 cd05849 Ig1_Contactin-1 First 99.3 3.4E-11 7.3E-16 86.2 9.0 73 135-209 19-92 (93)
124 cd05731 Ig3_L1-CAM_like Third 99.3 1.5E-11 3.2E-16 83.7 6.8 70 30-104 1-70 (71)
125 cd05855 Ig_TrkB_d5 Fifth domai 99.3 4.2E-11 9.2E-16 82.2 9.0 72 243-315 2-77 (79)
126 cd05853 Ig6_Contactin-4 Sixth 99.3 2.5E-11 5.4E-16 84.6 7.8 75 28-104 1-81 (85)
127 cd05848 Ig1_Contactin-5 First 99.3 8.1E-11 1.8E-15 84.6 10.8 72 238-314 18-92 (94)
128 cd04974 Ig3_FGFR Third immunog 99.3 4E-11 8.6E-16 85.5 9.0 76 27-104 1-89 (90)
129 cd05864 Ig2_VEGFR-2 Second imm 99.3 2.1E-11 4.6E-16 82.0 7.1 68 30-104 1-68 (70)
130 cd04977 Ig1_NCAM-1_like First 99.3 7.8E-11 1.7E-15 84.3 10.5 78 236-315 12-91 (92)
131 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 3E-11 6.6E-16 83.9 8.1 70 32-103 3-79 (81)
132 cd05725 Ig3_Robo Third immunog 99.3 3E-11 6.6E-16 81.6 7.8 69 242-316 1-69 (69)
133 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 3.4E-11 7.4E-16 82.5 8.2 70 30-104 1-73 (74)
134 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 5.8E-11 1.3E-15 82.5 9.4 72 243-315 2-79 (81)
135 cd05858 Ig3_FGFR-2 Third immun 99.3 4.6E-11 1E-15 85.3 9.1 76 27-104 1-89 (90)
136 cd05858 Ig3_FGFR-2 Third immun 99.3 5.6E-11 1.2E-15 84.8 9.4 77 239-316 1-89 (90)
137 cd05758 Ig5_KIRREL3-like Fifth 99.3 8.8E-11 1.9E-15 85.3 10.5 83 19-102 8-97 (98)
138 cd04970 Ig6_Contactin_like Six 99.2 3.1E-11 6.6E-16 85.2 7.8 75 136-211 1-82 (85)
139 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 3.4E-11 7.3E-16 81.0 7.7 68 27-102 1-68 (69)
140 cd05749 Ig2_Tyro3_like Second 99.2 2.5E-11 5.5E-16 84.1 7.2 73 130-208 8-80 (81)
141 cd05853 Ig6_Contactin-4 Sixth 99.2 4.5E-11 9.7E-16 83.3 8.3 80 240-320 1-85 (85)
142 cd05722 Ig1_Neogenin First imm 99.2 5.2E-11 1.1E-15 86.0 9.0 80 130-210 9-95 (95)
143 cd05736 Ig2_Follistatin_like S 99.2 4.1E-11 8.8E-16 82.7 8.0 73 30-104 1-73 (76)
144 cd04974 Ig3_FGFR Third immunog 99.2 7E-11 1.5E-15 84.3 9.4 77 239-316 1-89 (90)
145 cd05736 Ig2_Follistatin_like S 99.2 6E-11 1.3E-15 81.8 8.6 75 242-318 1-75 (76)
146 cd05849 Ig1_Contactin-1 First 99.2 9.2E-11 2E-15 84.0 9.7 71 27-102 19-91 (93)
147 cd05722 Ig1_Neogenin First imm 99.2 7.4E-11 1.6E-15 85.2 9.0 82 18-104 5-95 (95)
148 cd05765 Ig_3 Subgroup of the i 99.2 4.6E-11 1E-15 83.6 7.8 76 239-316 1-81 (81)
149 cd05752 Ig1_FcgammaR_like Frst 99.2 6.3E-11 1.4E-15 81.6 8.1 74 17-104 5-78 (78)
150 cd05882 Ig1_Necl-1 First (N-te 99.2 1.2E-10 2.7E-15 83.3 10.0 83 19-103 4-94 (95)
151 cd07702 Ig2_VEGFR-1 Second imm 99.2 5.1E-11 1.1E-15 80.3 7.2 69 30-103 1-69 (72)
152 cd05850 Ig1_Contactin-2 First 99.2 1.4E-10 3E-15 83.4 9.9 75 18-97 7-86 (94)
153 cd05750 Ig_Pro_neuregulin Immu 99.2 7E-11 1.5E-15 81.3 8.1 69 30-100 1-73 (75)
154 cd05749 Ig2_Tyro3_like Second 99.2 5.8E-11 1.3E-15 82.3 7.6 71 18-97 4-74 (81)
155 cd05750 Ig_Pro_neuregulin Immu 99.2 8.7E-11 1.9E-15 80.8 8.2 71 242-313 1-74 (75)
156 cd04973 Ig1_FGFR First immunog 99.2 1.7E-10 3.6E-15 80.1 9.5 74 236-316 6-79 (79)
157 cd05765 Ig_3 Subgroup of the i 99.2 6.1E-11 1.3E-15 82.9 7.3 77 27-104 1-81 (81)
158 cd05733 Ig6_L1-CAM_like Sixth 99.2 7.5E-11 1.6E-15 81.4 7.6 70 138-208 1-76 (77)
159 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 1.1E-10 2.4E-15 78.5 8.0 68 239-314 1-68 (69)
160 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2E-10 4.4E-15 80.6 9.7 76 27-104 1-82 (84)
161 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.1E-10 4.6E-15 80.5 9.5 78 239-317 1-83 (84)
162 cd05742 Ig1_VEGFR_like First i 99.2 1.4E-10 3E-15 81.7 8.5 77 239-316 1-83 (84)
163 cd05729 Ig2_FGFR_like Second i 99.2 2.4E-10 5.1E-15 80.7 9.7 82 21-104 3-85 (85)
164 cd05742 Ig1_VEGFR_like First i 99.2 1.3E-10 2.8E-15 81.8 8.2 76 27-104 1-83 (84)
165 cd05756 Ig1_IL1R_like First im 99.2 1.3E-10 2.7E-15 83.3 8.0 78 236-316 11-94 (94)
166 cd04979 Ig_Semaphorin_C Immuno 99.2 3.9E-10 8.4E-15 80.3 10.3 80 19-104 3-86 (89)
167 cd05898 Ig5_KIRREL3 Fifth immu 99.2 7E-10 1.5E-14 79.4 11.5 85 17-102 6-97 (98)
168 cd07701 Ig1_Necl-3 First (N-te 99.2 4.3E-10 9.3E-15 80.8 10.3 85 18-104 3-95 (95)
169 cd05873 Ig_Sema4D_like Immunog 99.2 2.8E-10 6E-15 79.6 8.8 69 19-93 3-71 (87)
170 cd05733 Ig6_L1-CAM_like Sixth 99.2 1.4E-10 3E-15 80.1 7.3 66 30-97 1-70 (77)
171 cd05874 Ig6_NrCAM Sixth immuno 99.2 1.6E-10 3.4E-15 79.7 7.2 70 138-208 1-76 (77)
172 cd05734 Ig7_DSCAM Seventh immu 99.1 2.9E-10 6.3E-15 79.0 8.6 70 242-315 1-78 (79)
173 cd05734 Ig7_DSCAM Seventh immu 99.1 1.9E-10 4.1E-15 79.9 7.6 72 138-210 1-79 (79)
174 cd05875 Ig6_hNeurofascin_like 99.1 2.2E-10 4.8E-15 78.9 7.7 70 138-208 1-76 (77)
175 cd07702 Ig2_VEGFR-1 Second imm 99.1 2.5E-10 5.3E-15 77.0 7.6 70 242-316 1-70 (72)
176 cd05753 Ig2_FcgammaR_like Seco 99.1 3.4E-10 7.3E-15 79.2 8.5 74 131-210 10-83 (83)
177 cd05727 Ig2_Contactin-2-like S 99.1 2.3E-10 5E-15 81.2 7.4 74 19-96 10-86 (96)
178 cd05874 Ig6_NrCAM Sixth immuno 99.1 2.5E-10 5.5E-15 78.6 7.2 63 30-97 1-70 (77)
179 cd04967 Ig1_Contactin First Ig 99.1 4.8E-10 1E-14 80.2 8.9 70 134-204 18-88 (91)
180 cd05875 Ig6_hNeurofascin_like 99.1 2.8E-10 6E-15 78.4 7.2 64 30-97 1-70 (77)
181 cd05729 Ig2_FGFR_like Second i 99.1 6.2E-10 1.3E-14 78.5 9.3 80 236-316 6-85 (85)
182 cd05860 Ig4_SCFR Fourth immuno 99.1 3.1E-09 6.7E-14 75.5 11.4 84 234-317 13-100 (101)
183 cd05895 Ig_Pro_neuregulin-1 Im 99.1 9.3E-10 2E-14 75.8 8.8 71 242-313 1-75 (76)
184 cd05845 Ig2_L1-CAM_like Second 99.1 6.8E-10 1.5E-14 78.6 8.1 80 12-95 3-84 (95)
185 cd05895 Ig_Pro_neuregulin-1 Im 99.1 1.1E-09 2.4E-14 75.4 8.6 69 30-100 1-74 (76)
186 cd04979 Ig_Semaphorin_C Immuno 99.1 6.8E-10 1.5E-14 79.1 7.5 79 131-211 7-87 (89)
187 cd05753 Ig2_FcgammaR_like Seco 99.0 9.3E-10 2E-14 76.9 7.5 74 21-104 8-83 (83)
188 cd05754 Ig3_Perlecan_like Thir 99.0 1.7E-09 3.6E-14 76.3 8.5 77 18-102 7-84 (85)
189 cd05757 Ig2_IL1R_like Second i 99.0 1.3E-09 2.8E-14 77.6 7.8 77 21-103 4-85 (92)
190 cd04967 Ig1_Contactin First Ig 99.0 4.5E-09 9.8E-14 75.1 9.6 68 238-309 18-86 (91)
191 cd05862 Ig1_VEGFR First immuno 99.0 4.5E-09 9.8E-14 74.0 9.2 79 239-317 1-85 (86)
192 smart00408 IGc2 Immunoglobulin 99.0 3.7E-09 8E-14 69.5 8.3 63 26-94 1-63 (63)
193 cd05885 Ig2_Necl-4 Second immu 99.0 2.7E-09 5.8E-14 73.0 7.6 65 29-96 1-69 (80)
194 cd05873 Ig_Sema4D_like Immunog 99.0 1.9E-09 4.2E-14 75.4 6.7 66 130-198 6-71 (87)
195 PF13895 Ig_2: Immunoglobulin 99.0 3.5E-09 7.5E-14 73.7 8.0 72 130-210 9-80 (80)
196 cd05754 Ig3_Perlecan_like Thir 99.0 4.4E-09 9.6E-14 74.1 8.5 71 236-314 13-84 (85)
197 cd07701 Ig1_Necl-3 First (N-te 99.0 8.9E-09 1.9E-13 74.0 10.1 80 235-316 8-95 (95)
198 cd05717 Ig1_Necl-1-3_like Firs 99.0 8.5E-09 1.8E-13 74.4 10.0 83 20-104 5-95 (95)
199 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 6.2E-09 1.3E-13 74.2 8.8 81 20-104 8-104 (104)
200 cd05871 Ig_Semaphorin_classIII 98.9 6E-09 1.3E-13 74.1 8.5 79 20-104 4-88 (91)
201 PF00047 ig: Immunoglobulin do 98.9 4.4E-09 9.6E-14 69.7 7.1 61 27-89 1-64 (64)
202 smart00408 IGc2 Immunoglobulin 98.9 6.2E-09 1.3E-13 68.4 7.6 63 134-199 1-63 (63)
203 cd05727 Ig2_Contactin-2-like S 98.9 2.1E-09 4.5E-14 76.3 5.5 71 130-201 13-86 (96)
204 cd05882 Ig1_Necl-1 First (N-te 98.9 1E-08 2.2E-13 73.5 9.0 78 236-315 9-94 (95)
205 cd05862 Ig1_VEGFR First immuno 98.9 1.2E-08 2.5E-13 71.9 8.5 76 27-104 1-84 (86)
206 smart00410 IG_like Immunoglobu 98.9 3.1E-08 6.7E-13 69.4 10.6 82 21-104 3-85 (86)
207 smart00409 IG Immunoglobulin. 98.9 3.1E-08 6.7E-13 69.4 10.6 82 21-104 3-85 (86)
208 cd05757 Ig2_IL1R_like Second i 98.9 4.8E-09 1E-13 74.6 6.1 69 130-201 5-78 (92)
209 cd07690 Ig1_CD4 First immunogl 98.9 1.2E-08 2.6E-13 72.6 7.8 73 22-95 2-90 (94)
210 cd05845 Ig2_L1-CAM_like Second 98.9 1E-08 2.2E-13 72.7 6.9 79 226-308 5-85 (95)
211 cd05885 Ig2_Necl-4 Second immu 98.8 3.4E-08 7.4E-13 67.6 9.2 65 138-202 2-70 (80)
212 PF00047 ig: Immunoglobulin do 98.8 1.5E-08 3.3E-13 67.1 7.3 61 239-301 1-64 (64)
213 cd05881 Ig1_Necl-2 First (N-te 98.8 4.9E-08 1.1E-12 69.5 9.9 71 20-91 5-83 (95)
214 cd05897 Ig2_IL1R2_like Second 98.8 1.3E-08 2.8E-13 72.4 6.6 73 22-97 5-82 (95)
215 PF13895 Ig_2: Immunoglobulin 98.8 1.1E-08 2.4E-13 71.1 6.1 69 236-316 11-80 (80)
216 cd05860 Ig4_SCFR Fourth immuno 98.8 1E-07 2.2E-12 67.8 10.8 86 18-104 9-99 (101)
217 cd05872 Ig_Sema4B_like Immunog 98.8 5.7E-08 1.2E-12 67.5 8.6 78 20-104 4-82 (85)
218 cd05871 Ig_Semaphorin_classIII 98.8 8.1E-08 1.8E-12 68.3 9.3 80 235-318 7-90 (91)
219 cd07690 Ig1_CD4 First immunogl 98.8 3.7E-08 8.1E-13 70.1 7.5 72 236-308 4-91 (94)
220 smart00410 IG_like Immunoglobu 98.7 2.1E-07 4.6E-12 65.1 10.9 79 236-316 6-85 (86)
221 smart00409 IG Immunoglobulin. 98.7 2.1E-07 4.6E-12 65.1 10.9 79 236-316 6-85 (86)
222 cd05717 Ig1_Necl-1-3_like Firs 98.7 1.9E-07 4E-12 67.3 10.2 79 236-316 9-95 (95)
223 cd05751 Ig1_LILRB1_like First 98.7 9.1E-08 2E-12 68.2 8.0 87 116-210 2-90 (91)
224 cd05759 Ig2_KIRREL3-like Secon 98.7 1.6E-07 3.4E-12 65.6 8.4 67 29-97 1-73 (82)
225 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 8.2E-08 1.8E-12 68.5 6.9 70 131-200 11-95 (104)
226 cd05883 Ig2_Necl-2 Second immu 98.7 1.6E-07 3.4E-12 64.5 7.9 74 29-104 1-79 (82)
227 cd05774 Ig_CEACAM_D1 First imm 98.6 1.7E-07 3.8E-12 68.2 8.1 81 18-103 4-104 (105)
228 PHA03376 BARF1; Provisional 98.6 4.7E-07 1E-11 70.6 10.8 126 21-160 20-163 (221)
229 cd05751 Ig1_LILRB1_like First 98.6 2.9E-07 6.3E-12 65.6 8.8 63 236-304 13-75 (91)
230 cd05899 IgV_TCR_beta Immunoglo 98.6 4.7E-07 1E-11 67.2 9.7 74 18-93 4-95 (110)
231 cd05883 Ig2_Necl-2 Second immu 98.6 5.4E-07 1.2E-11 61.9 8.8 74 138-211 2-80 (82)
232 cd04983 IgV_TCR_alpha_like Imm 98.6 7.8E-07 1.7E-11 65.9 10.3 74 19-93 5-93 (109)
233 cd05759 Ig2_KIRREL3-like Secon 98.6 5E-07 1.1E-11 63.1 8.5 72 242-314 2-80 (82)
234 PF13927 Ig_3: Immunoglobulin 98.6 2E-07 4.4E-12 63.6 6.4 74 117-196 2-75 (75)
235 cd05872 Ig_Sema4B_like Immunog 98.6 2.2E-07 4.8E-12 64.5 6.4 77 130-210 6-82 (85)
236 cd05897 Ig2_IL1R2_like Second 98.5 2.2E-07 4.8E-12 66.1 6.3 71 236-309 7-82 (95)
237 cd05755 Ig2_ICAM-1_like Second 98.5 3.9E-07 8.5E-12 65.2 7.4 75 21-96 10-88 (100)
238 cd05881 Ig1_Necl-2 First (N-te 98.5 1.3E-06 2.8E-11 62.2 10.0 67 236-303 9-83 (95)
239 PHA03376 BARF1; Provisional 98.5 8.3E-06 1.8E-10 63.8 14.6 124 131-268 22-167 (221)
240 cd05877 Ig_LP_like Immunoglobu 98.5 1.1E-06 2.3E-11 64.7 8.6 79 26-104 1-102 (106)
241 cd05711 Ig_FcalphaRI Immunoglo 98.5 1.8E-06 3.9E-11 61.9 9.1 68 21-91 9-76 (94)
242 cd05741 Ig_CEACAM_D1_like Firs 98.5 1.2E-06 2.5E-11 62.7 8.1 73 27-102 1-90 (92)
243 cd05877 Ig_LP_like Immunoglobu 98.4 2.1E-06 4.5E-11 63.2 9.3 80 238-317 1-103 (106)
244 cd05714 Ig_CSPGs_LP Immunoglob 98.4 2.2E-06 4.8E-11 63.1 9.2 80 238-318 1-104 (106)
245 cd05714 Ig_CSPGs_LP Immunoglob 98.4 1.5E-06 3.3E-11 63.9 8.2 79 26-104 1-102 (106)
246 cd04980 IgV_L_kappa Immunoglob 98.4 3.3E-06 7.1E-11 62.1 9.9 72 19-91 7-92 (106)
247 cd00099 IgV Immunoglobulin var 98.4 1.7E-06 3.7E-11 63.6 8.2 71 23-94 2-91 (105)
248 PHA03270 envelope glycoprotein 98.4 0.00021 4.5E-09 63.3 22.0 206 24-266 139-361 (466)
249 cd05761 Ig2_Necl-1-4_like Seco 98.4 2.4E-06 5.2E-11 59.5 8.2 67 29-97 1-72 (82)
250 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2E-06 4.4E-11 62.1 8.1 78 27-104 1-96 (97)
251 cd07705 Ig2_Necl-1 Second immu 98.4 3.6E-06 7.8E-11 58.7 9.0 66 29-96 1-72 (83)
252 cd05775 Ig_SLAM-CD84_like_N N- 98.4 9.9E-07 2.2E-11 63.6 6.3 79 25-104 2-96 (97)
253 cd05880 Ig_EVA1 Immunoglobulin 98.4 3.6E-06 7.8E-11 62.8 9.5 85 19-103 5-114 (115)
254 cd05774 Ig_CEACAM_D1 First imm 98.4 1.2E-06 2.7E-11 63.7 6.8 77 131-208 9-103 (105)
255 cd05715 Ig_P0-like Immunoglobu 98.4 5.7E-06 1.2E-10 61.9 10.6 77 19-95 5-105 (116)
256 cd05713 Ig_MOG_like Immunoglob 98.4 4E-06 8.6E-11 61.0 9.3 78 239-316 1-99 (100)
257 cd05711 Ig_FcalphaRI Immunoglo 98.4 3.8E-06 8.3E-11 60.1 8.8 64 236-302 12-75 (94)
258 cd05713 Ig_MOG_like Immunoglob 98.4 2.9E-06 6.2E-11 61.7 8.3 78 27-104 1-99 (100)
259 PF13927 Ig_3: Immunoglobulin 98.4 7.7E-07 1.7E-11 60.7 5.0 57 30-91 18-75 (75)
260 cd05879 Ig_P0 Immunoglobulin ( 98.4 5E-06 1.1E-10 61.8 9.6 77 20-97 6-107 (116)
261 cd05718 Ig1_PVR_like First imm 98.3 4.3E-06 9.3E-11 60.5 9.0 77 28-104 1-97 (98)
262 cd05718 Ig1_PVR_like First imm 98.3 5.4E-06 1.2E-10 60.0 9.5 77 240-316 1-97 (98)
263 cd04983 IgV_TCR_alpha_like Imm 98.3 5.7E-06 1.2E-10 61.2 9.5 71 235-306 9-94 (109)
264 cd05741 Ig_CEACAM_D1_like Firs 98.3 1E-06 2.2E-11 63.0 5.0 73 135-208 1-90 (92)
265 cd05878 Ig_Aggrecan_like Immun 98.3 5.6E-06 1.2E-10 61.2 9.0 79 26-104 1-106 (110)
266 PHA02987 Ig domain OX-2-like p 98.3 7.6E-06 1.6E-10 64.4 10.0 87 17-105 20-122 (189)
267 cd04984 IgV_L_lambda Immunoglo 98.3 7.7E-06 1.7E-10 59.2 9.2 68 23-91 2-84 (98)
268 cd05900 Ig_Aggrecan Immunoglob 98.3 9E-06 2E-10 60.0 9.6 79 238-317 1-109 (112)
269 cd05900 Ig_Aggrecan Immunoglob 98.3 8.2E-06 1.8E-10 60.2 9.2 37 68-104 72-108 (112)
270 cd04982 IgV_TCR_gamma Immunogl 98.3 6.9E-06 1.5E-10 61.5 8.9 73 18-91 4-98 (116)
271 cd05899 IgV_TCR_beta Immunoglo 98.2 8.9E-06 1.9E-10 60.3 8.5 68 236-305 10-95 (110)
272 cd05886 Ig1_Nectin-1_like Firs 98.2 1.1E-05 2.3E-10 58.1 8.6 35 282-316 63-98 (99)
273 cd05886 Ig1_Nectin-1_like Firs 98.2 1.3E-05 2.8E-10 57.8 8.8 37 68-104 61-98 (99)
274 cd05846 Ig1_MRC-OX-2_like Firs 98.2 7.2E-06 1.6E-10 59.2 7.6 78 239-316 1-96 (97)
275 cd05878 Ig_Aggrecan_like Immun 98.2 1.9E-05 4.1E-10 58.3 9.9 80 238-317 1-107 (110)
276 cd05879 Ig_P0 Immunoglobulin ( 98.2 2E-05 4.4E-10 58.5 10.0 80 236-315 10-113 (116)
277 cd00099 IgV Immunoglobulin var 98.2 1.3E-05 2.9E-10 58.7 8.8 70 236-306 3-91 (105)
278 cd05755 Ig2_ICAM-1_like Second 98.2 2E-05 4.3E-10 56.5 9.0 70 131-200 12-87 (100)
279 cd04980 IgV_L_kappa Immunoglob 98.2 1.5E-05 3.2E-10 58.7 8.6 68 236-304 12-93 (106)
280 cd05884 Ig2_Necl-3 Second immu 98.2 2E-05 4.3E-10 54.8 8.7 65 30-96 2-72 (83)
281 cd05887 Ig1_Nectin-3_like Firs 98.2 1.6E-05 3.4E-10 56.8 8.3 75 136-210 1-95 (96)
282 PHA03269 envelope glycoprotein 98.2 0.00041 8.8E-09 62.3 18.7 162 70-265 289-470 (566)
283 PF07686 V-set: Immunoglobulin 98.2 1.1E-05 2.4E-10 59.9 7.9 73 19-92 8-101 (114)
284 cd05888 Ig1_Nectin-4_like Frst 98.1 1.7E-05 3.7E-10 57.5 8.5 37 68-104 62-99 (100)
285 cd05775 Ig_SLAM-CD84_like_N N- 98.1 9.2E-06 2E-10 58.6 6.8 79 237-316 2-96 (97)
286 cd07694 Ig2_CD4 Second immunog 98.1 2E-05 4.4E-10 54.1 7.9 74 23-104 10-85 (88)
287 cd05887 Ig1_Nectin-3_like Firs 98.1 1.6E-05 3.4E-10 56.8 7.7 77 240-316 1-95 (96)
288 cd00098 IgC Immunoglobulin Con 98.1 1.2E-05 2.5E-10 57.8 7.2 70 238-307 12-87 (95)
289 cd04982 IgV_TCR_gamma Immunogl 98.1 2.3E-05 5.1E-10 58.6 8.9 69 235-304 9-99 (116)
290 cd00098 IgC Immunoglobulin Con 98.1 1E-05 2.2E-10 58.2 6.7 70 25-95 11-87 (95)
291 cd04984 IgV_L_lambda Immunoglo 98.1 2.4E-05 5.3E-10 56.5 8.7 68 236-304 3-85 (98)
292 cd05772 IgC_SIRP Signal-regula 98.1 3.4E-05 7.4E-10 56.8 9.3 73 23-96 17-95 (111)
293 cd05716 Ig_pIgR Immunoglobulin 98.1 3.1E-05 6.7E-10 56.0 9.0 70 22-93 2-87 (98)
294 cd05761 Ig2_Necl-1-4_like Seco 98.1 5.5E-05 1.2E-09 52.6 9.6 63 138-201 2-71 (82)
295 cd05884 Ig2_Necl-3 Second immu 98.1 6E-05 1.3E-09 52.4 9.5 63 138-200 2-71 (83)
296 cd07700 IgV_CD8_beta Immunoglo 98.1 4.4E-05 9.6E-10 56.2 9.3 67 23-90 2-92 (107)
297 cd05888 Ig1_Nectin-4_like Frst 98.0 3.7E-05 8.1E-10 55.7 8.5 76 241-316 2-99 (100)
298 cd07705 Ig2_Necl-1 Second immu 98.0 8E-05 1.7E-09 51.9 9.8 63 138-201 2-72 (83)
299 cd05902 Ig_Neurocan Immunoglob 98.0 2.9E-05 6.4E-10 57.0 7.8 37 68-104 70-106 (110)
300 cd05880 Ig_EVA1 Immunoglobulin 98.0 6.7E-05 1.4E-09 55.9 9.7 73 235-307 9-104 (115)
301 cd07699 IgC_L Immunoglobulin C 98.0 5.5E-05 1.2E-09 54.8 8.4 68 132-199 14-90 (100)
302 cd05766 IgC_MHC_II_beta Class 98.0 6.6E-05 1.4E-09 53.6 8.6 70 25-95 12-85 (94)
303 PHA02987 Ig domain OX-2-like p 98.0 7.2E-05 1.6E-09 59.0 9.2 81 130-211 25-122 (189)
304 cd05715 Ig_P0-like Immunoglobu 98.0 0.0001 2.3E-09 55.0 9.9 72 236-307 10-105 (116)
305 cd05772 IgC_SIRP Signal-regula 98.0 8.7E-05 1.9E-09 54.6 9.1 72 236-307 18-94 (111)
306 cd05901 Ig_Versican Immunoglob 97.9 7.1E-05 1.5E-09 55.2 8.2 36 69-104 78-113 (117)
307 PHA03271 envelope glycoprotein 97.9 0.0034 7.4E-08 55.5 19.7 165 68-265 205-386 (490)
308 cd07706 IgV_TCR_delta Immunogl 97.9 7.7E-05 1.7E-09 55.8 8.7 73 19-92 6-94 (116)
309 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00011 2.4E-09 52.5 8.9 68 239-306 14-84 (93)
310 PHA03273 envelope glycoprotein 97.9 0.0022 4.7E-08 57.6 18.5 163 70-264 198-377 (486)
311 cd05712 Ig_Siglec_N Immunoglob 97.9 0.00026 5.6E-09 53.2 10.9 74 19-92 6-102 (119)
312 smart00407 IGc1 Immunoglobulin 97.9 0.00014 3.1E-09 49.5 8.6 63 137-199 1-72 (75)
313 cd05716 Ig_pIgR Immunoglobulin 97.9 0.00017 3.6E-09 52.1 9.3 69 236-305 4-87 (98)
314 cd07700 IgV_CD8_beta Immunoglo 97.9 0.00014 3.1E-09 53.4 8.8 68 236-303 3-93 (107)
315 cd07706 IgV_TCR_delta Immunogl 97.8 0.00031 6.8E-09 52.5 10.6 68 236-304 11-94 (116)
316 cd05902 Ig_Neurocan Immunoglob 97.8 0.0002 4.3E-09 52.6 9.1 38 280-317 70-107 (110)
317 PF07686 V-set: Immunoglobulin 97.8 8.1E-05 1.8E-09 55.2 7.2 81 234-315 11-113 (114)
318 cd07694 Ig2_CD4 Second immunog 97.8 0.00018 4E-09 49.4 8.1 74 236-317 11-86 (88)
319 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.00021 4.6E-09 51.8 8.8 68 132-199 13-92 (102)
320 cd05901 Ig_Versican Immunoglob 97.8 0.00056 1.2E-08 50.5 10.8 37 281-317 78-114 (117)
321 cd05889 Ig1_DNAM-1_like First 97.8 0.00017 3.7E-09 51.5 7.8 75 240-314 1-93 (96)
322 cd05766 IgC_MHC_II_beta Class 97.8 0.00024 5.2E-09 50.7 8.5 71 237-307 12-85 (94)
323 cd07698 IgC_MHC_I_alpha3 Class 97.7 0.00023 5.1E-09 50.8 8.2 68 27-95 14-85 (93)
324 cd05720 Ig_CD8_alpha Immunoglo 97.7 0.00023 5.1E-09 51.9 8.3 67 236-303 3-90 (104)
325 cd05769 IgC_TCR_beta T cell re 97.7 0.0003 6.6E-09 52.0 8.7 82 116-200 2-94 (115)
326 cd05720 Ig_CD8_alpha Immunoglo 97.7 0.00022 4.7E-09 52.1 7.9 67 23-90 2-89 (104)
327 cd05767 IgC_MHC_II_alpha Class 97.7 0.00028 6.2E-09 50.2 8.1 68 238-305 14-84 (94)
328 cd00096 Ig Immunoglobulin doma 97.7 0.00017 3.7E-09 47.7 6.8 62 30-93 1-66 (74)
329 cd07704 Ig2_Nectin-3-4_like Se 97.7 0.00045 9.7E-09 49.1 8.7 75 20-97 9-88 (97)
330 cd07703 Ig2_Nectin-2_like Seco 97.7 0.00047 1E-08 49.1 8.9 76 25-103 13-92 (95)
331 cd05889 Ig1_DNAM-1_like First 97.7 0.00036 7.7E-09 49.9 8.2 65 136-200 1-86 (96)
332 cd05770 IgC_beta2m Class I maj 97.7 0.00031 6.7E-09 49.8 7.8 68 237-305 13-83 (93)
333 cd05770 IgC_beta2m Class I maj 97.7 0.0004 8.6E-09 49.3 8.3 69 25-95 13-85 (93)
334 cd07699 IgC_L Immunoglobulin C 97.7 0.00015 3.3E-09 52.4 6.2 71 236-306 14-90 (100)
335 smart00407 IGc1 Immunoglobulin 97.6 0.00051 1.1E-08 46.8 8.0 65 29-94 1-72 (75)
336 cd00096 Ig Immunoglobulin doma 97.6 0.00029 6.3E-09 46.5 6.5 63 242-305 1-66 (74)
337 cd05719 Ig2_PVR_like Second im 97.6 0.00052 1.1E-08 49.0 7.9 70 25-97 13-86 (95)
338 cd05767 IgC_MHC_II_alpha Class 97.6 0.00043 9.3E-09 49.3 7.4 68 26-94 14-85 (94)
339 PF07654 C1-set: Immunoglobuli 97.5 0.00029 6.2E-09 49.1 6.0 69 26-95 7-79 (83)
340 cd04981 IgV_H Immunoglobulin ( 97.5 0.00046 9.9E-09 51.6 7.4 73 18-91 3-97 (117)
341 cd05847 IgC_CH2_IgE CH2 domain 97.5 0.00074 1.6E-08 48.1 8.0 67 134-200 13-88 (94)
342 PF07654 C1-set: Immunoglobuli 97.5 0.00034 7.4E-09 48.7 6.0 71 237-307 6-79 (83)
343 PF08205 C2-set_2: CD80-like C 97.5 0.00029 6.3E-09 49.8 5.7 67 27-95 14-86 (89)
344 cd04986 IgC_CH2 CH2 domain (se 97.5 0.00052 1.1E-08 49.1 6.7 70 236-306 16-90 (99)
345 cd05712 Ig_Siglec_N Immunoglob 97.5 0.0014 3E-08 49.2 9.4 70 235-304 10-102 (119)
346 cd07696 IgC_CH3 CH3 domain (th 97.4 0.00061 1.3E-08 48.8 6.8 73 24-96 11-89 (96)
347 cd07697 IgC_TCR_gamma T cell r 97.4 0.0025 5.5E-08 45.5 9.9 66 132-199 13-86 (96)
348 cd07704 Ig2_Nectin-3-4_like Se 97.4 0.00099 2.1E-08 47.4 7.5 70 131-200 12-86 (97)
349 cd07696 IgC_CH3 CH3 domain (th 97.4 0.00055 1.2E-08 49.0 6.3 72 236-307 11-88 (96)
350 PF08205 C2-set_2: CD80-like C 97.4 0.0018 3.9E-08 45.7 8.8 64 135-199 14-85 (89)
351 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00066 1.4E-08 49.2 6.3 71 25-96 14-94 (102)
352 cd05769 IgC_TCR_beta T cell re 97.4 0.0011 2.3E-08 49.1 7.3 76 236-311 15-98 (115)
353 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00056 1.2E-08 44.1 4.5 51 25-91 5-55 (65)
354 cd04986 IgC_CH2 CH2 domain (se 97.3 0.0018 3.9E-08 46.3 7.5 81 116-200 3-91 (99)
355 cd05847 IgC_CH2_IgE CH2 domain 97.3 0.0016 3.5E-08 46.4 7.3 71 238-308 13-89 (94)
356 smart00406 IGv Immunoglobulin 97.2 0.0019 4.2E-08 44.4 7.1 61 241-301 1-81 (81)
357 cd07697 IgC_TCR_gamma T cell r 97.2 0.0019 4E-08 46.2 6.6 70 236-305 13-85 (96)
358 cd04985 IgC_CH1 CH1 domain (fi 97.2 0.0056 1.2E-07 43.7 9.1 64 134-198 15-87 (95)
359 cd05719 Ig2_PVR_like Second im 97.1 0.0037 8E-08 44.6 8.0 67 239-308 15-85 (95)
360 KOG1480|consensus 97.1 0.0003 6.4E-09 66.6 2.9 162 131-308 35-209 (909)
361 cd04981 IgV_H Immunoglobulin ( 97.1 0.004 8.6E-08 46.5 8.4 67 236-303 9-97 (117)
362 smart00406 IGv Immunoglobulin 97.1 0.0022 4.8E-08 44.1 6.7 23 67-89 59-81 (81)
363 TIGR00864 PCC polycystin catio 97.0 0.85 1.8E-05 50.9 29.3 194 24-264 1709-1906(2740)
364 cd07703 Ig2_Nectin-2_like Seco 97.0 0.0062 1.3E-07 43.4 7.7 72 239-313 15-90 (95)
365 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0049 1.1E-07 43.6 6.7 70 24-94 12-87 (99)
366 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.0047 1E-07 40.2 5.9 49 27-91 6-54 (69)
367 cd04985 IgC_CH1 CH1 domain (fi 96.9 0.0043 9.3E-08 44.3 6.4 67 238-305 15-87 (95)
368 PHA03269 envelope glycoprotein 96.8 0.031 6.6E-07 50.7 12.3 116 175-303 289-415 (566)
369 PHA02633 hypothetical protein; 96.8 0.0027 5.9E-08 40.2 4.2 36 70-105 18-53 (63)
370 PHA02982 hypothetical protein; 96.8 0.14 3.1E-06 41.2 14.6 120 21-161 33-173 (251)
371 PHA02982 hypothetical protein; 96.8 0.11 2.5E-06 41.7 13.9 119 129-264 33-172 (251)
372 cd07692 Ig_CD3_epsilon Immunog 96.7 0.0031 6.8E-08 40.7 4.1 51 237-303 5-55 (65)
373 KOG0613|consensus 96.7 0.009 2E-07 60.4 9.0 228 71-307 279-518 (1205)
374 cd07691 Ig_CD3_gamma_delta Imm 96.6 0.0067 1.5E-07 39.5 5.2 49 135-196 6-54 (69)
375 PHA02914 Immunoglobulin-like d 96.4 0.63 1.4E-05 41.5 25.8 84 20-104 19-116 (500)
376 PHA03270 envelope glycoprotein 96.4 0.071 1.5E-06 47.8 11.7 118 174-304 181-307 (466)
377 TIGR00864 PCC polycystin catio 96.4 2.4 5.2E-05 47.7 29.7 265 23-341 1878-2177(2740)
378 cd07689 Ig2_VCAM-1 Second immu 96.4 0.015 3.3E-07 41.2 6.2 68 131-198 11-86 (99)
379 PHA02633 hypothetical protein; 96.3 0.011 2.5E-07 37.4 4.6 40 283-322 19-58 (63)
380 cd05721 IgV_CTLA-4 Immunoglobu 96.3 0.047 1E-06 40.0 8.4 72 18-89 4-93 (115)
381 KOG1480|consensus 96.0 0.0038 8.2E-08 59.5 2.4 78 22-104 139-218 (909)
382 PF08204 V-set_CD47: CD47 immu 95.9 0.011 2.3E-07 44.3 3.9 79 24-104 24-119 (130)
383 PHA03271 envelope glycoprotein 95.9 0.25 5.5E-06 44.2 12.6 121 174-306 206-336 (490)
384 PHA03273 envelope glycoprotein 95.9 0.18 4E-06 45.7 11.9 117 175-303 198-323 (486)
385 PHA03042 CD47-like protein; Pr 95.6 0.068 1.5E-06 44.9 7.7 71 25-104 29-104 (286)
386 PF08204 V-set_CD47: CD47 immu 95.5 0.016 3.5E-07 43.4 3.3 76 134-211 26-120 (130)
387 cd05721 IgV_CTLA-4 Immunoglobu 95.2 0.26 5.7E-06 36.1 8.9 67 236-302 10-94 (115)
388 PF07354 Sp38: Zona-pellucida- 95.0 0.059 1.3E-06 45.2 5.6 51 39-93 10-60 (271)
389 PF07354 Sp38: Zona-pellucida- 95.0 0.16 3.5E-06 42.6 8.1 50 252-305 11-60 (271)
390 PHA03042 CD47-like protein; Pr 94.2 0.27 5.9E-06 41.4 7.6 72 236-316 28-104 (286)
391 PHA02914 Immunoglobulin-like d 94.1 4.2 9.1E-05 36.5 15.2 161 20-200 272-469 (500)
392 PF02124 Marek_A: Marek's dise 94.1 2.8 6.1E-05 34.4 14.1 133 151-302 7-158 (211)
393 KOG4597|consensus 93.5 0.12 2.7E-06 46.8 4.7 95 10-105 193-292 (560)
394 PHA02865 MHC-like TNF binding 92.5 0.64 1.4E-05 41.0 7.7 65 241-305 216-304 (338)
395 KOG4597|consensus 92.3 0.2 4.3E-06 45.5 4.4 81 236-318 208-293 (560)
396 cd05890 Ig2_Nectin-1_like Seco 92.1 1.1 2.3E-05 31.5 6.8 71 30-103 23-97 (98)
397 PHA02865 MHC-like TNF binding 90.8 1 2.2E-05 39.8 7.0 22 29-50 216-238 (338)
398 PF11465 Receptor_2B4: Natural 90.4 0.39 8.4E-06 34.4 3.4 34 282-316 71-104 (108)
399 PF11465 Receptor_2B4: Natural 90.4 0.9 1.9E-05 32.6 5.2 38 173-210 69-106 (108)
400 PF06328 Lep_receptor_Ig: Ig-l 90.4 1.1 2.3E-05 31.5 5.6 68 18-89 9-81 (89)
401 PF00041 fn3: Fibronectin type 90.1 0.2 4.2E-06 34.4 1.8 23 325-347 62-84 (85)
402 KOG0613|consensus 88.6 1.3 2.7E-05 45.7 6.7 82 236-317 346-428 (1205)
403 PF02124 Marek_A: Marek's dise 87.9 14 0.0003 30.5 14.1 131 43-196 7-159 (211)
404 PHA03283 envelope glycoprotein 87.5 9.1 0.0002 35.8 10.8 86 68-157 132-233 (542)
405 PF06328 Lep_receptor_Ig: Ig-l 85.1 1.3 2.7E-05 31.1 3.4 65 130-194 13-81 (89)
406 PF05790 C2-set: Immunoglobuli 84.3 8 0.00017 26.4 6.9 33 284-316 45-78 (80)
407 PF05790 C2-set: Immunoglobuli 84.2 7.3 0.00016 26.6 6.7 36 44-90 28-63 (80)
408 PHA03112 IL-18 binding protein 84.0 7.8 0.00017 29.5 7.3 78 236-313 35-127 (141)
409 PF02480 Herpes_gE: Alphaherpe 83.1 3.4 7.3E-05 38.5 6.2 89 174-262 88-190 (439)
410 PHA03286 envelope glycoprotein 82.5 41 0.00088 31.1 13.5 89 174-262 126-226 (492)
411 PHA03283 envelope glycoprotein 81.0 50 0.0011 31.2 13.9 88 174-262 133-234 (542)
412 PHA03282 envelope glycoprotein 80.6 49 0.0011 30.8 14.3 42 170-211 119-161 (540)
413 cd05890 Ig2_Nectin-1_like Seco 79.0 10 0.00023 26.7 5.9 73 240-315 21-97 (98)
414 PF02480 Herpes_gE: Alphaherpe 78.5 7.1 0.00015 36.4 6.6 84 70-157 89-189 (439)
415 KOG1026|consensus 75.7 8.6 0.00019 38.1 6.6 149 22-202 202-355 (774)
416 PHA03189 UL14 tegument protein 75.1 19 0.00042 31.2 7.6 21 76-96 139-159 (348)
417 KOG1026|consensus 74.1 9.1 0.0002 38.0 6.3 161 131-320 203-366 (774)
418 PF03921 ICAM_N: Intercellular 72.6 30 0.00066 24.3 7.5 78 17-104 8-85 (91)
419 PHA03112 IL-18 binding protein 71.1 28 0.0006 26.6 6.9 70 25-94 36-120 (141)
420 PF11049 KSHV_K1: Glycoprotein 66.7 32 0.0007 22.3 6.0 55 139-211 2-56 (71)
421 PHA03286 envelope glycoprotein 65.4 81 0.0018 29.2 9.8 89 68-157 125-225 (492)
422 PHA03052 Hypothetical protein; 64.4 21 0.00045 23.3 4.4 33 20-53 5-40 (69)
423 smart00060 FN3 Fibronectin typ 60.4 11 0.00025 24.3 3.1 20 325-344 63-82 (83)
424 PHA03240 envelope glycoprotein 60.1 16 0.00034 29.9 4.1 83 21-104 32-143 (258)
425 PHA03281 envelope glycoprotein 56.4 1.9E+02 0.0041 27.7 15.3 89 174-262 297-395 (642)
426 cd00063 FN3 Fibronectin type 3 55.7 15 0.00032 24.6 3.1 25 325-349 63-87 (93)
427 PHA03052 Hypothetical protein; 52.7 42 0.00092 22.0 4.3 31 235-265 8-40 (69)
428 PHA03240 envelope glycoprotein 52.7 35 0.00075 28.0 4.8 20 174-193 104-123 (258)
429 PHA03189 UL14 tegument protein 50.4 66 0.0014 28.1 6.4 18 288-305 139-156 (348)
430 PF02010 REJ: REJ domain; Int 46.6 7.1 0.00015 36.6 0.2 89 236-324 205-308 (440)
431 KOG0200|consensus 44.1 2.4E+02 0.0052 27.9 10.3 124 174-314 12-149 (609)
432 PHA03281 envelope glycoprotein 41.6 1.8E+02 0.004 27.8 8.3 86 69-157 297-394 (642)
433 PF11141 DUF2914: Protein of u 37.5 1.2E+02 0.0025 19.8 5.3 50 152-202 8-58 (66)
434 PF10430 Ig_Tie2_1: Tie-2 Ig-l 36.9 1.3E+02 0.0028 20.9 5.0 26 133-158 13-38 (96)
435 KOG4802|consensus 34.8 32 0.00069 31.4 2.4 19 325-343 215-233 (516)
436 PF06832 BiPBP_C: Penicillin-B 33.8 1.6E+02 0.0035 20.3 8.7 55 137-202 31-85 (89)
437 PF00801 PKD: PKD domain; Int 33.7 1.3E+02 0.0029 19.3 5.2 28 23-51 7-34 (69)
438 PF06832 BiPBP_C: Penicillin-B 32.7 1.7E+02 0.0036 20.2 7.8 56 241-310 31-86 (89)
439 PHA03282 envelope glycoprotein 31.2 73 0.0016 29.7 4.0 25 71-95 334-358 (540)
440 PF02440 Adeno_E3_CR1: Adenovi 29.8 1.6E+02 0.0035 19.1 4.5 20 133-157 3-22 (63)
441 PF01688 Herpes_gI: Alphaherpe 25.9 1.8E+02 0.0039 23.0 4.9 35 70-104 124-158 (161)
442 PHA02935 Hypothetical protein; 23.5 4.1E+02 0.0089 21.6 6.6 58 153-210 69-137 (349)
443 COG5475 Uncharacterized small 22.2 1.6E+02 0.0034 18.5 3.1 25 284-310 20-44 (60)
444 KOG0200|consensus 20.1 8.6E+02 0.019 24.1 12.3 21 71-91 14-34 (609)
No 1
>KOG3513|consensus
Probab=100.00 E-value=7.3e-39 Score=304.55 Aligned_cols=280 Identities=20% Similarity=0.308 Sum_probs=235.2
Q ss_pred cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823 8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87 (365)
Q Consensus 8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 87 (365)
-.|+|.+....+.......|+.+.|.|.+.|+|.| ++.|+|.+.. ............. +|.|.+++.+|+|.|+|
T Consensus 237 ~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P-~i~W~k~~g~-~~~~r~~~~~~~~---vL~I~nv~~~D~G~Y~C 311 (1051)
T KOG3513|consen 237 REYAPKILVPFPETETALKGQSVKLECFALGNPTP-QIKWRKVDGK-PPPRRATYSNYGK---VLKIPNVQYEDAGEYEC 311 (1051)
T ss_pred cccCCccccCCCCcccccCCCeEEEEEEecCCCCC-cEEEEeCCCC-CCCcceeeecccc---EEEecccCcCCCeEEEE
Confidence 56788887777767778999999999999999999 9999999885 3322222222233 89999999999999999
Q ss_pred EEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC
Q psy3823 88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS 167 (365)
Q Consensus 88 ~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~ 167 (365)
.|.|..|.....+.|+| ..+|.....+ .+..+..|++++|.|.+.|.|.|. ++|++||.++.....
T Consensus 312 ~AeN~~G~~~~~~~v~v---------~a~P~w~~~~----~d~~~~~gs~v~~eC~a~g~P~p~-v~WlkNg~pl~~~~r 377 (1051)
T KOG3513|consen 312 IAENSRGSATHSGHVTV---------YAPPYWLQKP----QDTEADTGSNVTLECKASGKPNPT-VKWLKNGEPLEPAER 377 (1051)
T ss_pred EEecccccceeeEEEEE---------ecCchhhccc----ceeEecCCCCeEEEEEecCCCCCc-eEEeeCCeecCccCC
Confidence 99999997779999999 7788755543 455788899999999999999999 999999999985443
Q ss_pred -CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCc-cceeeeecCceEEEE
Q psy3823 168 -AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ-QRIYGALRNEQVLVS 245 (365)
Q Consensus 168 -~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~~l~ 245 (365)
.+....+++|.|.+++..|+|.|+|.|.|..|... ..+.|+|+. .+|.+...+ ...+.+..|..+.|.
T Consensus 378 ~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~-anA~L~V~a---------~~P~f~~~p~~~~~~a~~g~~v~i~ 447 (1051)
T KOG3513|consen 378 DPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIY-ANAELKVLA---------SAPVFPLNPVERKVMAVVGGTVTID 447 (1051)
T ss_pred CcceEEeCCEEEEEecccccCeEEEeeeecccceEe-eeeEEEEEc---------cCCCCCCCccceEEEEEeCCeEEEe
Confidence 34667789999999999999999999999999887 678999984 457766544 444558899999999
Q ss_pred EEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc
Q psy3823 246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE 321 (365)
Q Consensus 246 C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 321 (365)
|...+.|.|. +.|.+.+. ...+..+..+..+|+ |.|.+++.+|+|.|+|.|.|..|.+.....|.|..+++
T Consensus 448 C~~~asP~p~-~~W~k~~~-~~~~~~r~~i~edGt---L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tr 518 (1051)
T KOG3513|consen 448 CKPFASPKPK-VSWLKGGE-KLLQSGRIRILEDGT---LEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATR 518 (1051)
T ss_pred eccCCCCcce-EEEEcCCc-ccccCceEEECCCCc---EEecccCcccCcEEEEEEEcccCccceEEEEEEecCce
Confidence 9999999998 99999887 556666777778886 99999999999999999999999999999998876665
No 2
>KOG3513|consensus
Probab=100.00 E-value=6.6e-32 Score=257.36 Aligned_cols=316 Identities=22% Similarity=0.302 Sum_probs=246.9
Q ss_pred eEEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-e-eEecCCeEEEEEEccCCCC
Q psy3823 3 NLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-S-YSIQDGSTSVARYTPTSEL 80 (365)
Q Consensus 3 ~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-~-~~~~~~~~~~l~i~~~~~~ 80 (365)
-+.+.+.++|.+.. ......+..|++++|.|.+.+.|.+ .|+|++|+.. +..... - ....++ .|+|.+++..
T Consensus 323 ~~~v~v~a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p-~v~WlkNg~p-l~~~~r~~~~~i~~g---~L~is~v~~~ 396 (1051)
T KOG3513|consen 323 SGHVTVYAPPYWLQ-KPQDTEADTGSNVTLECKASGKPNP-TVKWLKNGEP-LEPAERDPRYKIDDG---TLIISNVQES 396 (1051)
T ss_pred eEEEEEecCchhhc-ccceeEecCCCCeEEEEEecCCCCC-ceEEeeCCee-cCccCCCcceEEeCC---EEEEEecccc
Confidence 35677788888765 4455667899999999999899999 9999999998 653333 1 223455 8999999999
Q ss_pred CCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCe
Q psy3823 81 EYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGI 160 (365)
Q Consensus 81 d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~ 160 (365)
|+|.|+|.|.|..|.....+.|.|. ..+|.+...+.. ....+..|..+.|.|...+.|.+. +.|.+++.
T Consensus 397 dsg~YQC~A~Nk~G~i~anA~L~V~--------a~~P~f~~~p~~--~~~~a~~g~~v~i~C~~~asP~p~-~~W~k~~~ 465 (1051)
T KOG3513|consen 397 DSGVYQCIAENKYGTIYANAELKVL--------ASAPVFPLNPVE--RKVMAVVGGTVTIDCKPFASPKPK-VSWLKGGE 465 (1051)
T ss_pred cCeEEEeeeecccceEeeeeEEEEE--------ccCCCCCCCccc--eEEEEEeCCeEEEeeccCCCCcce-EEEEcCCc
Confidence 9999999999999999999999995 234555444333 223567899999999999999998 99999888
Q ss_pred EEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCc
Q psy3823 161 TISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNE 240 (365)
Q Consensus 161 ~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~ 240 (365)
.+. ......+..+++|.|.+++++|+|.|+|.|.|..|... ....|.|. .++.+...+.. ..+..|+
T Consensus 466 ~~~-~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~-~~~~L~Vk----------d~tri~~~P~~-~~v~~g~ 532 (1051)
T KOG3513|consen 466 KLL-QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAE-STGNLIVK----------DATRITLAPSN-TDVKVGE 532 (1051)
T ss_pred ccc-cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccc-eEEEEEEe----------cCceEEeccch-hhhccCc
Confidence 333 23444556799999999999999999999999999988 68899999 88888874444 3489999
Q ss_pred eEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCceeE-eeCCC-EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 241 QVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTSYS-IQDGS-TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 241 ~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~~~-~~~~~-~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
.++|.|.+...+... .|.|.+||..........++ ..++. ...|.|.+++.+|+|.|.|.|.....+.+....+.|+
T Consensus 533 ~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~ 612 (1051)
T KOG3513|consen 533 SVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVR 612 (1051)
T ss_pred eEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEe
Confidence 999999998666544 59999999754443332222 11111 1459999999999999999999988888887777776
Q ss_pred -cCcc--------c---------------------------------------------------cccCccccEEEEEEE
Q psy3823 318 -KAGE--------C---------------------------------------------------EHPVAVSHRYVAKLY 337 (365)
Q Consensus 318 -~~~~--------c---------------------------------------------------~~~l~~~~~~~~~~~ 337 (365)
++++ + .++|.|-..|+|||.
T Consensus 613 gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~ 692 (1051)
T KOG3513|consen 613 GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVV 692 (1051)
T ss_pred cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEE
Confidence 3333 0 017999999999999
Q ss_pred EEcCCCCCcee
Q psy3823 338 ATNAKGAGPMV 348 (365)
Q Consensus 338 ~~n~~g~s~~~ 348 (365)
|+|..|+|+|.
T Consensus 693 AvN~iG~gePS 703 (1051)
T KOG3513|consen 693 AVNSIGIGEPS 703 (1051)
T ss_pred EEcccccCCCC
Confidence 99999999864
No 3
>KOG4221|consensus
Probab=99.98 E-value=1.9e-30 Score=246.56 Aligned_cols=308 Identities=19% Similarity=0.308 Sum_probs=241.5
Q ss_pred CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
.+.....+..|+.+.|.|.+++.|.+ .+.|.+++.. +..........++ .|.|..++..|.|.|+|.+++...+.
T Consensus 145 ~~~~~~t~~~g~ta~f~c~vn~e~~p-~i~w~kn~~p-l~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r 219 (1381)
T KOG4221|consen 145 LQPESTTLLYGQTALFSCEVNAEPVP-TIMWLKNDQP-LPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQR 219 (1381)
T ss_pred cCccceeEecCCcEEEEEEEcCccCc-eeEEeccccc-ccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCC
Confidence 45556778899999999999998888 9999999998 6666665666777 89999999999999999999877665
Q ss_pred c-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeec
Q psy3823 97 R-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ 175 (365)
Q Consensus 97 ~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~ 175 (365)
. ...+|+|.+... ...-...+.-. ....+.+|+++.|.|.+.+.|.|. |+|.+||..|............+
T Consensus 220 ~S~~a~ltv~s~~~----~~~~~~fl~~p---~~~~v~~g~~v~leCvvs~~p~p~-v~Wlrng~~i~~ds~rivl~g~~ 291 (1381)
T KOG4221|consen 220 TSNEAELTVLSDPG----ALNKLVFLDEP---SNAVVVEGDDVVLECVVSGVPKPS-VKWLRNGEKISVDSYRIVLVGGS 291 (1381)
T ss_pred ccceeEEEecCCcc----cccceeeecCC---CccccccCCcEEEEEEecCCCCCc-eEEeeCCeeeeecceEEEEeccc
Confidence 5 778888842100 00001111111 345788999999999999999998 99999999998765333344478
Q ss_pred eEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc
Q psy3823 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ 255 (365)
Q Consensus 176 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 255 (365)
.|.|++++.+|+|.|+|+|.|...... +...|+|+ .+|.+...+...+ +.++.++.+.|.+.|.|.|.
T Consensus 292 slliS~a~~~dSg~YtC~Atn~~D~id-asaev~V~----------a~P~~~~~p~~l~-A~e~~die~ec~~~g~p~p~ 359 (1381)
T KOG4221|consen 292 SLLISNATDDDSGKYTCRATNTNDSID-ASAEVTVL----------APPGFTKAPTTLV-AHESMDIEFECPVSGKPIPT 359 (1381)
T ss_pred ceEEeccccccCceEEEEecCCCcccc-cceEEEEE----------cCCCCCCCCccee-eeeccceeEeCCCCCCCcce
Confidence 999999999999999999999655444 56789999 8898887666655 77799999999999999998
Q ss_pred eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc--------------
Q psy3823 256 YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE-------------- 321 (365)
Q Consensus 256 ~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-------------- 321 (365)
+.|+++|..... .+.+++..++. |.|..+-..|.|.|.|.+.|..|.+.....+.|.+.+-
T Consensus 360 -v~w~kNgd~~ip-sdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~l 434 (1381)
T KOG4221|consen 360 -VRWYKNGDRIIP-SDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDL 434 (1381)
T ss_pred -EEEEecCcccCc-ccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcce
Confidence 999999985544 55556555554 77777778999999999999999999988887765522
Q ss_pred -----------ccc----------------------------------------cCccccEEEEEEEEEcCCCCCc-eee
Q psy3823 322 -----------CEH----------------------------------------PVAVSHRYVAKLYATNAKGAGP-MVL 349 (365)
Q Consensus 322 -----------c~~----------------------------------------~l~~~~~~~~~~~~~n~~g~s~-~~~ 349 (365)
|+. +|.|+..|.|+|.|.|..|++. .-.
T Consensus 435 v~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~p 514 (1381)
T KOG4221|consen 435 VANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAP 514 (1381)
T ss_pred ecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCc
Confidence 111 7999999999999999999776 344
Q ss_pred eeece
Q psy3823 350 MKTNT 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
+++.|
T Consensus 515 LkV~t 519 (1381)
T KOG4221|consen 515 LKVTT 519 (1381)
T ss_pred eEEec
Confidence 54444
No 4
>KOG4194|consensus
Probab=99.96 E-value=4.2e-28 Score=216.16 Aligned_cols=290 Identities=16% Similarity=0.269 Sum_probs=218.5
Q ss_pred CceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCCce------eEe-------cCCeEEEEEEccCCCCCCe
Q psy3823 18 QQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTS------YSI-------QDGSTSVARYTPTSELEYG 83 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~~------~~~-------~~~~~~~l~i~~~~~~d~G 83 (365)
++....+..|+.++|+|.+.+ ...|..+.|.+++.. +...... ... ...-...|.+.||+..|+|
T Consensus 509 qPe~~~al~g~nirftC~a~sssasplsi~WR~dnev-q~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~g 587 (873)
T KOG4194|consen 509 QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEV-QPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEG 587 (873)
T ss_pred CchHhhhhhccceEEEEEeccCCCCCceeEeeecccc-CcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCc
Confidence 344556778999999999443 345569999998875 4432211 001 1113357999999999999
Q ss_pred EEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE-
Q psy3823 84 TLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT- 161 (365)
Q Consensus 84 ~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~- 161 (365)
.|+|+++|..|... ..+.|+| ...|.+.-.| .+.++..|+.+.|.|.+.|.|.|. |.|-++|..
T Consensus 588 rYQCVvtN~FGStysqk~KltV---------~~~PsFtktP----~dltl~tg~mArl~CaAtG~P~Pe-Iawqkdggtd 653 (873)
T KOG4194|consen 588 RYQCVVTNHFGSTYSQKAKLTV---------NQAPSFTKTP----EDLTLRTGQMARLECAATGHPRPE-IAWQKDGGTD 653 (873)
T ss_pred eEEEEEecccCcchhheeEEEe---------eccCccccCc----ccceeecccceeeeeeccCCCCcc-eeehhcCCCC
Confidence 99999999999876 8889998 6777766555 456889999999999999999999 999987665
Q ss_pred EeeCCCCceE--EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecC
Q psy3823 162 ISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239 (365)
Q Consensus 162 l~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g 239 (365)
.+.....+.. ..+..+.|.++..+|+|.|+|.|.|..|... ..++|.|. ..|.+..+..... +..|
T Consensus 654 FPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~is-anAtL~V~----------e~p~f~~PL~~~~-V~~g 721 (873)
T KOG4194|consen 654 FPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQIS-ANATLTVL----------ETPSFSIPLEDQL-VVVG 721 (873)
T ss_pred CchhhhheeeecCCCCEEEEecccccccceeEEeeecccccee-eceEEEEe----------cCCcccccccceE-EEec
Confidence 6655544433 3477899999999999999999999999776 78899999 7887776654433 8899
Q ss_pred ceEEEEEEEeeeCC-CceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823 240 EQVLVSCTVDANPQ-AQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK 318 (365)
Q Consensus 240 ~~~~l~C~~~~~p~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 318 (365)
+++.|.|.+.+.|. |. +.|++++++... ..+..+ .+ ....|.+.+...+|+|.|+|...|..|.....+.+.+..
T Consensus 722 et~vlqC~a~~~~a~pr-~~W~k~d~pil~-t~rh~f-~d-~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 722 ETLVLQCLAEGAPADPR-LEWFKEDKPILI-TERHTF-PD-GDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred ceEEEEEecCCCCCCcc-ccccCCCCceEE-eecccC-CC-CCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 99999999999887 76 999998775432 222222 22 234588899999999999999999999988888887777
Q ss_pred CccccccCccc-cEEEEEEEEE
Q psy3823 319 AGECEHPVAVS-HRYVAKLYAT 339 (365)
Q Consensus 319 ~~~c~~~l~~~-~~~~~~~~~~ 339 (365)
...|-.+ +.| ++-..+..|+
T Consensus 798 ~~~~~~S-e~~~Tq~~~riia~ 818 (873)
T KOG4194|consen 798 KKKCRMS-EDGSTQVGIRIIAV 818 (873)
T ss_pred cCCcccc-cCCccEEEEEEEEE
Confidence 7667665 333 3444444443
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=3.2e-27 Score=209.04 Aligned_cols=259 Identities=17% Similarity=0.247 Sum_probs=173.7
Q ss_pred eEEEEecCCcEEEEEEe-----CCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 20 RIYGALRNEQVLVSCTV-----DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~-----~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
..+.+.+|+.+.|.|.+ .+.|.+ .++|+|++.. ... .....++ ..|.|.++..+|+|.|+|.++|..+
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~-~i~W~K~g~~-~~~---~~~~~~g--~~l~i~~~~~~DsG~Y~C~a~N~~g 106 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNIL-DILWEKRGAD-NDR---IIPIDNG--SNMLILNPTQSDSGIYICITKNETY 106 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCc-eEEEEECCCc-cce---EEEccCC--ceEEEcccCcccCeEEEEEEECCCc
Confidence 45556789999999985 578888 9999999754 321 1111222 2577999999999999999999988
Q ss_pred CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-----EecCCCCeeEEEeCCeEEeeCCCCc
Q psy3823 95 NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-----QANPPYKKLIWTHNGITISNNASAG 169 (365)
Q Consensus 95 ~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-----~~~p~~~~i~W~~~~~~l~~~~~~~ 169 (365)
....++.|+|... .+|.+...+ .+..+.+|..+.|.|.. .+.+++. ++|++++. +. ....
T Consensus 107 ~~~~s~~L~V~~~-------~~~~~~~~~----~~~~~~~g~~~~i~C~~~~~~~~~~~~~~-i~W~k~~~-~~--~~r~ 171 (326)
T PHA02785 107 CDMMSLNLTIVSV-------SESNIDLIS----YPQIVNERSTGEMVCPNINAFIASNVNAD-IIWSGHRR-LR--NKRL 171 (326)
T ss_pred ceEEEEEEEEEec-------CCCccceee----ccceecccCcEEEECCChhhcccCCCCce-EEEccCCc-cC--Ccce
Confidence 7777888888422 112221111 22346789999999962 3456666 99998642 21 1111
Q ss_pred eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC---cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEE
Q psy3823 170 RIITNQTLVLQSVTRHSGGLYACSAINSQGEGG---STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC 246 (365)
Q Consensus 170 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~---s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C 246 (365)
....++.|.|.+++.+|+|.|+|.+.|..+... ...+.|.|..+ ..+|.+..+ ....+..|+.++|.|
T Consensus 172 ~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~-------~~pp~~~~p--~~~~~~~G~~v~L~C 242 (326)
T PHA02785 172 KQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR-------IIPPTMQLP--EGVVTSIGSNLTIAC 242 (326)
T ss_pred EecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc-------CCCceecCC--CcEEecCCCcEEEEE
Confidence 222357899999999999999999999877532 22344555411 134433322 223367799999999
Q ss_pred EEeeeCCCc--eeEEEeCCCCCCCCC--C--ceeEee-----CC---CEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823 247 TVDANPQAQ--YFTWAFNNSDTAPRP--L--TSYSIQ-----DG---STSVARYTPTSELEYGTLLCWARNEQGSQR 309 (365)
Q Consensus 247 ~~~~~p~~~--~~~W~~~~~~~~~~~--~--~~~~~~-----~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 309 (365)
.+.+.|.+. .+.|++||....... . +..... ++ ....|.|.+++.+|+|.|+|.|.|..|.+.
T Consensus 243 ~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 243 RVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred EEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 999988641 499999986432211 1 111111 11 145799999999999999999999986543
No 6
>KOG4222|consensus
Probab=99.94 E-value=7.4e-26 Score=214.39 Aligned_cols=304 Identities=18% Similarity=0.247 Sum_probs=237.2
Q ss_pred eCCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCc--eeEecCCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823 16 QSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNE 92 (365)
Q Consensus 16 ~~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~ 92 (365)
..+++...+..|+.+.|.|. ..+.|.+ .+.|.|+++. +..... ......+ .|.|.++...|.|+|.|+++|.
T Consensus 135 rv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kdg~p-l~~~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNm 209 (1281)
T KOG4222|consen 135 RVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKDGKP-LDHYDVPIIALISGG---NLLISNVRKSDEGTYACVATNM 209 (1281)
T ss_pred ccCcccccccccceeEEeccCCCCCCCC-cceeecCCCc-cccccceeEEEecCC---cEEEeccccCCCceeeeeeccc
Confidence 35566777889999999999 8889999 9999999998 652222 2233555 7999999999999999999999
Q ss_pred CCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE
Q psy3823 93 QGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI 171 (365)
Q Consensus 93 ~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~ 171 (365)
.|... ...+|+| ..+|.+...+ .+..+..|..+.+.|.+.|.|.|. +.|-+++..+... +..+.
T Consensus 210 vG~ReS~~A~lsv---------~e~P~f~~rp----~~~~v~~g~~~~f~c~v~GdP~P~-Vrwkk~~~~~P~~-ry~i~ 274 (1281)
T KOG4222|consen 210 VGERESIPARLSV---------QEKPWFWKRP----KDLAVLVGAAAEFDCRVGGDPQPT-VRWKKDDPSLPRS-RYSIL 274 (1281)
T ss_pred ccccccccceeee---------ccCCcccccc----ccceeecccccccccccCCCCCCc-eeeeccCCCCCcc-ceeee
Confidence 99876 7788998 7788776665 445788999999999999999998 9999987777642 22344
Q ss_pred EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee
Q psy3823 172 ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN 251 (365)
Q Consensus 172 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~ 251 (365)
..+.+|.|.+.+..|.|.|.|.+.|..|... ....++|. .+|.+........ +..|..++|.|.+.|.
T Consensus 275 ~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~-asa~ltV~----------apP~f~kkp~dq~-v~lg~~vt~pc~~~gn 342 (1281)
T KOG4222|consen 275 DDTQTLRIDRVTPTDEGTYVCPAENLVGGLE-ASATLTVQ----------APPSFGKKPRDQK-VALGGTVTFPCETLGN 342 (1281)
T ss_pred eccccccccccCCCcccceeeeccccccccc-cccceEEe----------cCcccccccCccc-cccCceEEeeeecCCC
Confidence 4568999999999999999999999999877 67789999 8888876554433 7789999999999999
Q ss_pred CCCceeEEEeCCCCCCCCC-----C--ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE----c-C
Q psy3823 252 PQAQYFTWAFNNSDTAPRP-----L--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV----K-A 319 (365)
Q Consensus 252 p~~~~~~W~~~~~~~~~~~-----~--~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~----~-~ 319 (365)
|+|. +.|.+.|....... . +..+...+ .|.|.++...|.|.|.|...+..|.......+.+. . .
T Consensus 343 P~Pa-vfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~r 418 (1281)
T KOG4222|consen 343 PPPA-VFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSR 418 (1281)
T ss_pred CCcc-eEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEEeeeccCC
Confidence 9999 99999886554331 1 11222333 59999999999999999999988876655555443 1 1
Q ss_pred cc---------------------cc-----------------c------------------cCccccEEEEEEEEEcCCC
Q psy3823 320 GE---------------------CE-----------------H------------------PVAVSHRYVAKLYATNAKG 343 (365)
Q Consensus 320 ~~---------------------c~-----------------~------------------~l~~~~~~~~~~~~~n~~g 343 (365)
++ |. + ++.-...+...+.|.+.+|
T Consensus 419 Ppp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~g 498 (1281)
T KOG4222|consen 419 PPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESG 498 (1281)
T ss_pred CCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCccc
Confidence 22 22 1 6777778888899999999
Q ss_pred CCceeeeeecee
Q psy3823 344 AGPMVLMKTNTE 355 (365)
Q Consensus 344 ~s~~~~~~~~~~ 355 (365)
.+.+.....+..
T Consensus 499 es~wSatl~v~~ 510 (1281)
T KOG4222|consen 499 ESTWSATLTVEK 510 (1281)
T ss_pred ccccceeeEhhh
Confidence 888766655543
No 7
>KOG4221|consensus
Probab=99.93 E-value=2.3e-24 Score=205.51 Aligned_cols=268 Identities=15% Similarity=0.268 Sum_probs=195.6
Q ss_pred ecCCcEEEEEEeCCC--CCcceEEEEeCCCcCCCCCCce--eEecCCeEEEEEEccCCC-----CCCeEEEEEEEeCCCC
Q psy3823 25 LRNEQVLVSCTVDAN--PQAQYFTWAFNNSGTAPRPLTS--YSIQDGSTSVARYTPTSE-----LEYGTLLCWARNEQGN 95 (365)
Q Consensus 25 ~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~l~~~~~~--~~~~~~~~~~l~i~~~~~-----~d~G~Y~C~a~~~~~~ 95 (365)
.+|..+.|.|..... +.+ .+.|.++|.. +...... ....++ +|-|.++.. -|+|.|+|.|......
T Consensus 52 ~~~~svlLecs~~~~~~~~~-~i~wkkDg~~-l~e~~d~~~~~LsNg---Sl~i~~v~~~kh~~~~eg~Yqc~atv~~~g 126 (1381)
T KOG4221|consen 52 MEGSSVLLECSAYAAGGTSV-KIEWKKDGSQ-LNEVYDDRRQLLSNG---SLYISSVLASKHNKVDEGVYQCLATVEDVG 126 (1381)
T ss_pred ccccceEEeccccccCCCCe-eEEEccCchh-hhhhhhhHHhhccCC---ceeEeeecccccccccCceEEEEEEccccc
Confidence 899999999994333 356 9999999987 6544322 233566 566666655 6899999999876332
Q ss_pred Cc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe
Q psy3823 96 QR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT 173 (365)
Q Consensus 96 ~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~ 173 (365)
.- .++.|.+ ...+.+..++ .+..+..|+++.|.|.+.+.+-+. +.|.+|..++.... ..+...
T Consensus 127 si~Sr~a~v~~---------a~~~~f~~~~----~~~t~~~g~ta~f~c~vn~e~~p~-i~w~kn~~pl~~~~-r~i~lp 191 (1381)
T KOG4221|consen 127 SILSRTAKVAL---------AGLADFALQP----ESTTLLYGQTALFSCEVNAEPVPT-IMWLKNDQPLPLDS-RVIVLP 191 (1381)
T ss_pred eeecceEEEEe---------cccCccccCc----cceeEecCCcEEEEEEEcCccCce-eEEecccccccCCC-cEEEcC
Confidence 22 6666666 3444444444 335688999999999999977776 99999999887655 445566
Q ss_pred eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC
Q psy3823 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 253 (365)
++.|.|.+++..|.|.|+|.+.+......+..+.|+|. .++...+... |...+ ....+..|+.+.|.|.+.+.|.
T Consensus 192 sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~-s~~~~~~~~~---fl~~p-~~~~v~~g~~v~leCvvs~~p~ 266 (1381)
T KOG4221|consen 192 SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVL-SDPGALNKLV---FLDEP-SNAVVVEGDDVVLECVVSGVPK 266 (1381)
T ss_pred CCcEEecccccCCCceEEEEEecCCcCCccceeEEEec-CCccccccee---eecCC-CccccccCCcEEEEEEecCCCC
Confidence 99999999999999999999999877666788889887 2221111111 22222 2233889999999999999999
Q ss_pred CceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc
Q psy3823 254 AQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE 321 (365)
Q Consensus 254 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 321 (365)
|. +.|.+||....... +++..-+. +.|.|.+++..|+|.|+|.|.|..-...+...|.|+.++.
T Consensus 267 p~-v~Wlrng~~i~~ds--~rivl~g~-~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~ 330 (1381)
T KOG4221|consen 267 PS-VKWLRNGEKISVDS--YRIVLVGG-SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPG 330 (1381)
T ss_pred Cc-eEEeeCCeeeeecc--eEEEEecc-cceEEeccccccCceEEEEecCCCcccccceEEEEEcCCC
Confidence 98 99999886544333 33323222 2388999999999999999999777777788888887654
No 8
>KOG4222|consensus
Probab=99.92 E-value=2.3e-24 Score=204.41 Aligned_cols=305 Identities=19% Similarity=0.297 Sum_probs=228.9
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.+....+..|..+.|.|.+.+.|.+ .++|.+++.. +..........+. +|.|.+++..|.|.|.|.+.|..|...
T Consensus 231 rp~~~~v~~g~~~~f~c~v~GdP~P-~Vrwkk~~~~-~P~~ry~i~~d~q---tl~i~r~tp~deg~y~C~a~n~vG~l~ 305 (1281)
T KOG4222|consen 231 RPKDLAVLVGAAAEFDCRVGGDPQP-TVRWKKDDPS-LPRSRYSILDDTQ---TLRIDRVTPTDEGTYVCPAENLVGGLE 305 (1281)
T ss_pred ccccceeecccccccccccCCCCCC-ceeeeccCCC-CCccceeeeeccc---cccccccCCCcccceeeeccccccccc
Confidence 3456677889999999999999999 9999998777 7766654443434 799999999999999999999999999
Q ss_pred ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE-Eee------CCCCce
Q psy3823 98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT-ISN------NASAGR 170 (365)
Q Consensus 98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~-l~~------~~~~~~ 170 (365)
....++| ..+|.+...+ .+..+..|..++|.|.+.|+|+|. +.|.+.|.. +-. ...+..
T Consensus 306 asa~ltV---------~apP~f~kkp----~dq~v~lg~~vt~pc~~~gnP~Pa-vfW~keg~q~llf~~~p~~~~~r~s 371 (1281)
T KOG4222|consen 306 ASATLTV---------QAPPSFGKKP----RDQKVALGGTVTFPCETLGNPPPA-VFWLKEGSQDLLFSASPPSSNGRGS 371 (1281)
T ss_pred cccceEE---------ecCccccccc----CccccccCceEEeeeecCCCCCcc-eEEeccCcceecccCCCCCcCccce
Confidence 8888888 6788776665 334577899999999999999999 999986543 321 112223
Q ss_pred EEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCcee-cCccceeeeecCceEEEEEEEe
Q psy3823 171 IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCK-QSQQRIYGALRNEQVLVSCTVD 249 (365)
Q Consensus 171 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~ 249 (365)
+...++|+|.+++..|.|.|.|...+..+..........+.. .....+|.+. ....... ...+..+.|.|.+.
T Consensus 372 vs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~-----~~~~rPpp~i~~g~~nQt-l~v~s~a~l~c~at 445 (1281)
T KOG4222|consen 372 VSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV-----LTDSRPPPIIEQGPANQT-LPVGSTASLPCSAT 445 (1281)
T ss_pred ecCCCCcccccccccccceEeecccccccccccceeEEEEee-----eccCCCCceeeecccccc-cccCcccccChhhh
Confidence 344679999999999999999998887775442222222210 0110122222 2222222 55688999999999
Q ss_pred eeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc--------
Q psy3823 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE-------- 321 (365)
Q Consensus 250 ~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-------- 321 (365)
+.|.+. +.|.+++-.......+..... ...|+|.+....|.|.|+|.+.+..|+..-++.|.|...+.
T Consensus 446 g~P~p~-i~wl~dg~~v~~~d~~~s~~~---~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~ 521 (1281)
T KOG4222|consen 446 GAPTPN-ISWLKDGCNVMNPDSRISQQE---IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCE 521 (1281)
T ss_pred CCCCCC-chhhhcccccccCCcccceee---eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCC
Confidence 999999 999998875544332222222 23589999999999999999999999999999998875554
Q ss_pred ---------------------ccc--------------------------------------------cCccccEEEEEE
Q psy3823 322 ---------------------CEH--------------------------------------------PVAVSHRYVAKL 336 (365)
Q Consensus 322 ---------------------c~~--------------------------------------------~l~~~~~~~~~~ 336 (365)
|++ +|+|...|.|.|
T Consensus 522 D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~v 601 (1281)
T KOG4222|consen 522 DPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLV 601 (1281)
T ss_pred ChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeee
Confidence 222 899999999999
Q ss_pred EEEcCCCCCceeeee
Q psy3823 337 YATNAKGAGPMVLMK 351 (365)
Q Consensus 337 ~~~n~~g~s~~~~~~ 351 (365)
.|.|..|.|++-.+.
T Consensus 602 Ra~n~~Gis~Ps~~S 616 (1281)
T KOG4222|consen 602 RAENEQGISDPSTSS 616 (1281)
T ss_pred eccccccccCCcccC
Confidence 999999988765443
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.83 E-value=1.1e-19 Score=151.37 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=112.2
Q ss_pred ceEEEEecCCcEEEEEEeCCCC-----------CcceEEEEeCCCcCC---CCCCc-----eeEecCCeEEEEEEccCCC
Q psy3823 19 QRIYGALRNEQVLVSCTVDANP-----------QAQYFTWAFNNSGTA---PRPLT-----SYSIQDGSTSVARYTPTSE 79 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p-----------~~~~v~W~~~~~~~l---~~~~~-----~~~~~~~~~~~l~i~~~~~ 79 (365)
...+.+.+|+++.|.|.+.+.| .+ .+.|+|++.... .+... ...........|.|.+++.
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~-~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSY-NVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCc-cEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 4567789999999999965543 44 899999875310 00110 0000011234899999999
Q ss_pred CCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-----cCCCCeeE
Q psy3823 80 LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-----NPPYKKLI 154 (365)
Q Consensus 80 ~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-----~p~~~~i~ 154 (365)
+|+|.|+|.|.|..+.....+.|.| ..++ .+..+.+|+++.|.|.+.+ .|.|. ++
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V---------~~~~----------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~-I~ 167 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTF---------DSGT----------INYQFNSGKDSKLHCYGTDGISSTFKDYT-LT 167 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEE---------ecCC----------ccceEecCCCEEEEeeCCCCccccCCCce-EE
Confidence 9999999999998777667788887 2221 1124678999999998763 34455 99
Q ss_pred EEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823 155 WTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ 198 (365)
Q Consensus 155 W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 198 (365)
|++||.++...........+.+|.|.+++.+|+|.|+|.+....
T Consensus 168 WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 168 WYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 99999998643322112235689999999999999999998753
No 10
>KOG4194|consensus
Probab=99.82 E-value=3e-19 Score=160.12 Aligned_cols=179 Identities=18% Similarity=0.259 Sum_probs=142.4
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.+....+..|+.+.|.|.+.|.|.| .+.|.|+|....+.....+..-.-....+.|.|+..+|.|.|+|.|.|..|..+
T Consensus 618 tP~dltl~tg~mArl~CaAtG~P~P-eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~is 696 (873)
T KOG4194|consen 618 TPEDLTLRTGQMARLECAATGHPRP-EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQIS 696 (873)
T ss_pred CcccceeecccceeeeeeccCCCCc-ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeecccccee
Confidence 3556778899999999999999999 999999887646554443322111122789999999999999999999999999
Q ss_pred ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceE
Q psy3823 98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTL 177 (365)
Q Consensus 98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l 177 (365)
...+|+| ...|.+.+.. .+..+..|+++.|.|.+.+.|+..++.|+++.+++....+......++-|
T Consensus 697 anAtL~V---------~e~p~f~~PL----~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQll 763 (873)
T KOG4194|consen 697 ANATLTV---------LETPSFSIPL----EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLL 763 (873)
T ss_pred eceEEEE---------ecCCcccccc----cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEE
Confidence 9999999 6666655443 55678999999999999998874449999999998765544444557789
Q ss_pred EEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823 178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211 (365)
Q Consensus 178 ~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~ 211 (365)
.+.+....|+|.|+|+.++..|... ..+.+.+.
T Consensus 764 vv~~~~~~daG~yTcem~~~~~~~~-~~i~l~~~ 796 (873)
T KOG4194|consen 764 VVKENLVEDAGIYTCEMSNTLGTER-IHICLLVY 796 (873)
T ss_pred EEEehhhhhcceEEEEEEeecccee-eEEEEEEe
Confidence 9999999999999999999988665 45556555
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.78 E-value=1.3e-17 Score=139.08 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=108.6
Q ss_pred cceecCCcEEEEEEEEecCCC----------CeeEEEeCCeEEeeC---CC--------CceEEeeceEEEeeecCCCCe
Q psy3823 130 SVLNEGVDIYFDCHIQANPPY----------KKLIWTHNGITISNN---AS--------AGRIITNQTLVLQSVTRHSGG 188 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~p~~----------~~i~W~~~~~~l~~~---~~--------~~~~~~~~~l~i~~~~~~d~G 188 (365)
..+.+|++|.|.|.+.+++.+ .++.|++++...-.. .. ......+.+|.|.+++.+|+|
T Consensus 32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG 111 (227)
T PHA02826 32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG 111 (227)
T ss_pred EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence 457899999999998765432 249999987653110 00 011122568999999999999
Q ss_pred EEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-----eCCCceeEEEeCC
Q psy3823 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-----NPQAQYFTWAFNN 263 (365)
Q Consensus 189 ~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~~~~W~~~~ 263 (365)
.|.|.+.|..+... ..+.|.|. ..+. . ..+..|+.+.|.|.+.+ .|.|. +.|+++|
T Consensus 112 ~Y~C~a~N~~~~~~-~~i~L~V~----------~~~~------~-~~~~~G~~v~L~C~~~~~~~~~~p~p~-I~WyKng 172 (227)
T PHA02826 112 IYICTISSGNICEE-STIRLTFD----------SGTI------N-YQFNSGKDSKLHCYGTDGISSTFKDYT-LTWYKNG 172 (227)
T ss_pred EEEEEEEECCcceE-EEEEEEEe----------cCCc------c-ceEecCCCEEEEeeCCCCccccCCCce-EEEEECC
Confidence 99999999776543 45566665 2221 1 22678999999999853 35676 9999998
Q ss_pred CCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823 264 SDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307 (365)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~ 307 (365)
.... ......+..+ ...|.|.+++.+|+|.|+|.|....+.
T Consensus 173 ~~l~-~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 173 NIVL-YTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred EECC-CCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 7543 2223332222 236999999999999999999987644
No 12
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.74 E-value=1.7e-16 Score=140.76 Aligned_cols=162 Identities=14% Similarity=0.250 Sum_probs=111.5
Q ss_pred EEEecCCcEEEEEE-----eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 22 YGALRNEQVLVSCT-----VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 22 ~~v~~G~~~~l~C~-----~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
..+.+|+.+.|.|. ..++|.+ .++|+++. . +.. .......++ .|.|.+++.+|.|.|+|.+.+..+..
T Consensus 131 ~~~~~g~~~~i~C~~~~~~~~~~~~~-~i~W~k~~-~-~~~-~r~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~g~~ 203 (326)
T PHA02785 131 QIVNERSTGEMVCPNINAFIASNVNA-DIIWSGHR-R-LRN-KRLKQRTPG---IITIEDVRKNDAGYYTCVLKYIYGDK 203 (326)
T ss_pred ceecccCcEEEECCChhhcccCCCCc-eEEEccCC-c-cCC-cceEecCCC---eEEEeecChhhCeEEEEEEEeccCCE
Confidence 34679999999997 2356888 99998764 2 322 221222233 79999999999999999999987765
Q ss_pred c----ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC--CeeEEEeCCeEEeeCCCC--
Q psy3823 97 R----TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY--KKLIWTHNGITISNNASA-- 168 (365)
Q Consensus 97 ~----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~--~~i~W~~~~~~l~~~~~~-- 168 (365)
. ..+.|.|.. +..+|.+ ..+ ....+..|+.++|.|.+.|.|.+ ..+.|++||..+......
T Consensus 204 ~~~~t~~v~l~V~~------~~~pp~~-~~p----~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~ 272 (326)
T PHA02785 204 TYNVTRIVKLEVRD------RIIPPTM-QLP----EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGD 272 (326)
T ss_pred EEeEEEEEEEEEec------cCCCcee-cCC----CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCc
Confidence 4 234455521 1234443 222 23456679999999999988764 349999999987532110
Q ss_pred -ce------------EEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823 169 -GR------------IITNQTLVLQSVTRHSGGLYACSAINSQGEG 201 (365)
Q Consensus 169 -~~------------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 201 (365)
+. ......|.|.+++.+|+|.|+|.|.|..+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 273 GRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred eeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 11 1113579999999999999999999987543
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.58 E-value=4.1e-14 Score=102.47 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=70.6
Q ss_pred eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
.+..|+.+.|.|.+.|.|++. +.|+++|.... ...+..+......+.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 11 ~v~~G~~v~l~C~~~G~p~p~-v~W~kdg~~l~-~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l 88 (98)
T cd05762 11 KVRAGESVELFCKVTGTQPIT-CTWMKFRKQIQ-EGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNL 88 (98)
T ss_pred EEECCCEEEEEEEEcccCCCc-eEEEECCEEec-CCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEE
Confidence 389999999999999999998 99999987543 2334445555566789999999999999999999999999999999
Q ss_pred EEEcC
Q psy3823 315 HVVKA 319 (365)
Q Consensus 315 ~v~~~ 319 (365)
.|...
T Consensus 89 ~V~~~ 93 (98)
T cd05762 89 TVVDK 93 (98)
T ss_pred EEecC
Confidence 98754
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.57 E-value=3.6e-14 Score=102.75 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=73.0
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.+....+.+|+.+.|.|.+.|.|.+ .+.|+|++.. +..............+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~-l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~ 83 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQ-IQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQ 83 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCC-ceEEEECCEE-ecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCcee
Confidence 3456778999999999999999999 9999999998 7655444444445556899999999999999999999999999
Q ss_pred ccEEEEE
Q psy3823 98 TPCTFHV 104 (365)
Q Consensus 98 ~~~~l~V 104 (365)
.++.|.|
T Consensus 84 ~~~~l~V 90 (98)
T cd05762 84 AQVNLTV 90 (98)
T ss_pred EEEEEEE
Confidence 9999999
No 15
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.56 E-value=5.4e-14 Score=99.27 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=67.6
Q ss_pred eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
.+..|+.+.|.|.+.|.|+|. +.|++++........+..+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 6 ~v~~G~~v~l~c~~~G~P~P~-v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 6 VVVAGNKLRLDVPISGEPAPT-VTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEEcCCEEEEEeeEeecCCCe-EEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 488999999999999999998 9999998755433334444444556789999999999999999999999999888877
Q ss_pred EE
Q psy3823 315 HV 316 (365)
Q Consensus 315 ~v 316 (365)
.|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 65
No 16
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.53 E-value=1.3e-13 Score=99.04 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=70.4
Q ss_pred eCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 16 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 16 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
...+..+.+.+|+++.|.|.+.+.|.| .+.|+|++.. +......... ..+...+|.|.+++.+|+|.|+|.|.|..|
T Consensus 5 ~~lp~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 5 GGLPDVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQA-LALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred ccCCceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEE-CccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 345667889999999999998899999 9999999988 6554433322 223446899999999999999999999999
Q ss_pred CCcccEEEEE
Q psy3823 95 NQRTPCTFHV 104 (365)
Q Consensus 95 ~~~~~~~l~V 104 (365)
.....+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 8887777654
No 17
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.52 E-value=1.4e-13 Score=97.20 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=68.5
Q ss_pred eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823 20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT 98 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~ 98 (365)
..+.+.+|+.+.|.|.+.+.|.| .+.|++++.. +.... ..........+.|.|.++..+|+|.|+|.|.|..|....
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~-i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~ 80 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAP-TVTWSRGDKA-FTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHA 80 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCC-eEEEEECCEE-CccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEE
Confidence 46778999999999999999999 9999999988 65432 223333344568999999999999999999999999887
Q ss_pred cEEEEE
Q psy3823 99 PCTFHV 104 (365)
Q Consensus 99 ~~~l~V 104 (365)
++.|.|
T Consensus 81 ~~~l~V 86 (86)
T cd05894 81 SLFVKV 86 (86)
T ss_pred EEEEEC
Confidence 777764
No 18
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.51 E-value=6.7e-14 Score=96.06 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=62.2
Q ss_pred cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 26 ~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+|+.+.|.|.+.++|.| .++|+|++.. +..........++ .|.|.+++.+|.|.|+|.|.|..|..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~-~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQ-LSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEE-CCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 69999999999999999 9999999987 6554433333344 8999999999999999999999999888777764
No 19
>KOG3515|consensus
Probab=99.51 E-value=5.4e-13 Score=125.59 Aligned_cols=309 Identities=20% Similarity=0.216 Sum_probs=177.5
Q ss_pred CeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
|.|....-.. .+.+|+.|.|.|.+.++|++..|.|++.++. +. .+.....+. +|.+.....+.-+.|.|.+.+
T Consensus 8 pv~~~~~l~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~-~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~n 80 (741)
T KOG3515|consen 8 PVCESSSLTV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSG-EH--GRYATIADP---TLVTTGDVRDTVAELNCRAFN 80 (741)
T ss_pred ccccCCCCCh-hhccCCcceeeeecCCCCCCcceEEEecCcc-cc--cccccccCC---ceeeecchhhhhhhhhhhhcc
Confidence 4443333344 8999999999999777777669999999988 55 111112333 677788888888999999998
Q ss_pred CCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE--ecCCCCeeEEEeCCeEEeeCCCC
Q psy3823 92 EQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ--ANPPYKKLIWTHNGITISNNASA 168 (365)
Q Consensus 92 ~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~--~~p~~~~i~W~~~~~~l~~~~~~ 168 (365)
..+.-. ....+.+ .++|.-...... .....+..+.+.|... +.|.+. ++|+.++.........
T Consensus 81 s~~~~~~~~~~l~v---------~~~pa~~~~~~e----~~~~~~~vvqi~c~~~~~~~P~~n-lrW~~n~r~e~~~~~~ 146 (741)
T KOG3515|consen 81 SVGMPSRCPMILDV---------DYPPACLPELGE----IFQVDKGVVQIICSAKVAGRPNPN-LRWGFNNRAELNAVNQ 146 (741)
T ss_pred cccCceecceeecc---------ccCccccccccc----hhhhcCCeEEEEEeecCCCCCCcc-eeeeeccEEeecccCC
Confidence 855443 6666666 566653332211 2345678899999665 345555 9999987655432210
Q ss_pred ---------ceE-EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeec
Q psy3823 169 ---------GRI-ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR 238 (365)
Q Consensus 169 ---------~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 238 (365)
.-. .....+.+...+..+.|.|+|.+.+......+....+.+.... .................+
T Consensus 147 ~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~------~~~~~~~~~~~~~qsF~~ 220 (741)
T KOG3515|consen 147 RGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEA------PCKGIGITGAQEQQSFTE 220 (741)
T ss_pred cccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccc------ccccceecchhhcCcccc
Confidence 011 2245677888889999999999998533322222333333000 011111111211123789
Q ss_pred CceEEEEEEEee-eCCCceeEEEeCCCCCCCC-CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 239 NEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPR-PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 239 g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
|+.+.|.|.+.+ .|.+. +.|+++....... ........+...+.+....-.....-...|++.| ... ++..+.+
T Consensus 221 g~~inlvc~~~gg~P~~~-~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~--~~~~tav 296 (741)
T KOG3515|consen 221 GQTINLVCNAQGGNPSQQ-QTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLA--ASQITAV 296 (741)
T ss_pred cceEEEEehhhcCCcchh-hhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccc--cceeeec
Confidence 999999997754 78887 9999976543321 1110000011122233322222334467799998 222 2222333
Q ss_pred EcCcccc------ccCccccEEEEEEEEEcCCCCCceeeee
Q psy3823 317 VKAGECE------HPVAVSHRYVAKLYATNAKGAGPMVLMK 351 (365)
Q Consensus 317 ~~~~~c~------~~l~~~~~~~~~~~~~n~~g~s~~~~~~ 351 (365)
..+..|. ..+-.|..+...+.+.++++.....+..
T Consensus 297 ~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~ 337 (741)
T KOG3515|consen 297 QVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYK 337 (741)
T ss_pred ccccccccccCcccccccccccccceeccCCCCccceeeec
Confidence 3222211 1466666666666666666544444443
No 20
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.51 E-value=2.6e-13 Score=97.39 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=65.4
Q ss_pred eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe-eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823 234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC 312 (365)
Q Consensus 234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 312 (365)
..+.+|+.+.|.|.+.|.|.|. +.|++++..... ..+..+. ..+..+.|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus 11 v~v~~G~~v~L~C~v~G~P~p~-v~W~k~g~~l~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 11 VTIMEGKTLNLTCTVFGDPDPE-VSWLKNDQALAL-SDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred EEEeCCCcEEEEEEEEecCCCe-EEEEECCEECcc-CCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 3488999999999999999998 999999865432 2333332 234456799999999999999999999999998887
Q ss_pred EEEE
Q psy3823 313 TFHV 316 (365)
Q Consensus 313 ~l~v 316 (365)
.|.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 7764
No 21
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.50 E-value=2.8e-13 Score=98.25 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=69.1
Q ss_pred CceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCCceeEecC-----CeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 18 QQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQD-----GSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
......+.+|+++.|.|.+.+ .|.+ .+.|+|++.. +........... ...+.|.|..+..+|+|.|+|.|.|
T Consensus 9 ~~~~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~~-i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N 86 (101)
T cd04975 9 QNTTIFVNLGENLNLVVEVEAYPPPP-HINWTYDNRT-LTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN 86 (101)
T ss_pred CCceEEEECCCCEEEEEEEEecCCCC-ccEEEeCCee-CCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence 345677899999999999988 8888 9999999998 765433222211 1346899999999999999999999
Q ss_pred CCCCCcccEEEEE
Q psy3823 92 EQGNQRTPCTFHV 104 (365)
Q Consensus 92 ~~~~~~~~~~l~V 104 (365)
..|..+.++.|.|
T Consensus 87 ~~G~~~~t~~L~V 99 (101)
T cd04975 87 SDASKSLTFELYV 99 (101)
T ss_pred CCccEEEEEEEEE
Confidence 9998888888877
No 22
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.49 E-value=3.5e-13 Score=95.63 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=66.6
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.+....+.+|+.+.|.|.+.|+|.+ .++|+|++.. +..... ....+. .|.|.+++.+|.|.|+|.|.|..|...
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~-~~~~~~-~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 80 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVP-VIRWRKILEP-MPATAE-ISMSGA---VLKIFNIQPEDEGTYECEAENIKGKDK 80 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCC-EEEEEECCcC-CCCCCE-EecCCC---EEEECcCChhhCEEEEEEEEcCCCceE
Confidence 4456668899999999999999999 9999999887 654332 111222 799999999999999999999999988
Q ss_pred ccEEEEE
Q psy3823 98 TPCTFHV 104 (365)
Q Consensus 98 ~~~~l~V 104 (365)
..+.|.|
T Consensus 81 ~~~~l~V 87 (88)
T cd05851 81 HQARVYV 87 (88)
T ss_pred EEEEEEE
Confidence 8888776
No 23
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.49 E-value=3e-13 Score=97.08 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=70.4
Q ss_pred CeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
|.+. ..+....+.+|+.+.|.|.+.++|.+ .+.|++++.. +................|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~~~-~~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 4 ATIL-TKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQI-IVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred Cccc-ccCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEE-CCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 4443 34567889999999999999999999 9999999987 6554443333444456899999999999999999999
Q ss_pred CCCCCcccEEE
Q psy3823 92 EQGNQRTPCTF 102 (365)
Q Consensus 92 ~~~~~~~~~~l 102 (365)
..|.....+.|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99987776665
No 24
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.49 E-value=4.7e-13 Score=97.08 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=65.3
Q ss_pred eeeecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCCCceeEeeC-----CCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823 234 YGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQD-----GSTSVARYTPTSELEYGTLLCWARNEQGS 307 (365)
Q Consensus 234 ~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~ 307 (365)
..+..|+.+.|.|.+.| .|+|. +.|+++|...... ........ ...+.|.|..+..+|+|.|+|.|.|..|.
T Consensus 13 ~~v~~G~~v~L~c~v~g~~P~p~-v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 13 IFVNLGENLNLVVEVEAYPPPPH-INWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred EEEECCCCEEEEEEEEecCCCCc-cEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 44889999999999999 78887 9999998755422 22222111 12467999999999999999999999999
Q ss_pred ceecEEEEEE
Q psy3823 308 QRTPCTFHVV 317 (365)
Q Consensus 308 ~~~~~~l~v~ 317 (365)
.+..+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9998888875
No 25
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.49 E-value=1.7e-13 Score=93.30 Aligned_cols=73 Identities=21% Similarity=0.417 Sum_probs=61.4
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
|+.+.|.|.+.+.|.+ .+.|+|++.. +..........++ +|.|.+++.+|.|.|+|.|.|..|....+..|+|
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~~-l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTEL-LVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCEe-cccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7899999998899999 9999999987 5544443333445 7999999999999999999999999888887764
No 26
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.48 E-value=5.6e-13 Score=94.60 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=66.8
Q ss_pred CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823 224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 303 (365)
Q Consensus 224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n 303 (365)
|.+........ +..|+.+.|.|.+.|.|.|. +.|++++..... . ..+...+ ..|.|.+++.+|+|.|+|.|.|
T Consensus 2 p~i~~~~~~~~-~~~G~~v~l~C~~~G~P~P~-v~W~k~~~~~~~-~--~~~~~~~--~~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 2 ADINVKFKDTY-ALKGQNVTLECFALGNPVPV-IRWRKILEPMPA-T--AEISMSG--AVLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred CceEEccccEE-EeCCCcEEEEEEecccCCCE-EEEEECCcCCCC-C--CEEecCC--CEEEECcCChhhCEEEEEEEEc
Confidence 44444443333 88999999999999999998 999998764322 1 1222222 3599999999999999999999
Q ss_pred CCccceecEEEEEE
Q psy3823 304 EQGSQRTPCTFHVV 317 (365)
Q Consensus 304 ~~g~~~~~~~l~v~ 317 (365)
..|..+..+.|.|+
T Consensus 75 ~~G~~~~~~~l~V~ 88 (88)
T cd05851 75 IKGKDKHQARVYVQ 88 (88)
T ss_pred CCCceEEEEEEEEC
Confidence 99999998888774
No 27
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.48 E-value=2.7e-13 Score=92.65 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=59.6
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeC-CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+.|.|.+.|.|.|. +.|++++........+..+..+ .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~-i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPK-IFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCe-EEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999998 9999998755433344444332 33457999999999999999999999999998888765
No 28
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.47 E-value=3.5e-13 Score=92.24 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=59.6
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCC-CEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDG-STSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+.|.|.+.|.|.|. +.|++++........+.....++ ....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQ-IFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCE-EEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 47999999999998 99999987654433444443332 3446999999999999999999999999998888865
No 29
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.47 E-value=7.9e-13 Score=93.79 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=64.5
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEee----CCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQ----DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~----~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
|+.+.|.|.+.|.|++. +.|++++........++.+.. +...+.|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~-i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPII-VRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCE-EEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 78999999999999998 999998864433223333221 2234679999999999999999999999999999999
Q ss_pred EEEcCc
Q psy3823 315 HVVKAG 320 (365)
Q Consensus 315 ~v~~~~ 320 (365)
.|..++
T Consensus 80 ~V~~~P 85 (88)
T cd05735 80 TVQEPP 85 (88)
T ss_pred EEeCCC
Confidence 987543
No 30
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.47 E-value=8.6e-13 Score=94.70 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=70.2
Q ss_pred CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823 222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301 (365)
Q Consensus 222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a 301 (365)
.+|.+...+.. ..+..|+.+.|.|.+.|.|.|. +.|+++|.... ...+..+......+.|.|.+++.+|+|.|.|.|
T Consensus 2 ~~~~~~~~p~~-~~~~~G~~~~L~C~~~g~P~p~-v~W~k~g~~l~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRS-LTVSEGESARFSCDVDGEPAPT-VTWMREGQIIV-SSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCcc-EEEeCCCcEEEEEEEeecCCCE-EEEEECCEECC-CCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 35555544433 3389999999999999999998 99999876432 233444444555678999999999999999999
Q ss_pred EcCCccceecEEE
Q psy3823 302 RNEQGSQRTPCTF 314 (365)
Q Consensus 302 ~n~~g~~~~~~~l 314 (365)
.|..|..+..+.|
T Consensus 79 ~N~~G~~~~~~~l 91 (92)
T cd05747 79 ENSEGKQEAQFTL 91 (92)
T ss_pred EcCCCCEeEEEEe
Confidence 9999998877665
No 31
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.47 E-value=8.2e-13 Score=95.53 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=65.5
Q ss_pred eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
.+..|+.+.|.|.+.|.|.|. +.|+++|.............. ..+.|.|.+++.+|.|.|+|.|.|..|..+.++.|
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p~-v~W~k~g~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 14 TANLGQSVTLACDADGFPEPT-MTWTKDGEPIESGEEKYSFNE--DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEeCCCCEEEEEeccEeCCCE-EEEEECCEECcCCCCEEEEeC--CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 378999999999999999998 999998875433322222222 23469999999999999999999999999999999
Q ss_pred EEEc
Q psy3823 315 HVVK 318 (365)
Q Consensus 315 ~v~~ 318 (365)
.|..
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 8864
No 32
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.46 E-value=1.4e-12 Score=94.57 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=67.3
Q ss_pred CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----CceeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823 223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----LTSYSIQDGSTSVARYTPTSELEYGTLL 298 (365)
Q Consensus 223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~s~l~i~~v~~~d~G~Y~ 298 (365)
.|.|...+.... +..|+.+.|.|.+.|.|.|. +.|++++....... .+.....+...+.|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~~~~~~~-~~~g~~v~l~C~~~G~P~P~-v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQTA-MELEEQITLTCEASGDPIPS-ITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCceE-EEcCCCEEEEEEeeEeCCCE-EEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence 355544332322 55689999999999999998 99999875332111 1122233444578999999999999999
Q ss_pred EEEEcCCccceecEEEEE
Q psy3823 299 CWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 299 C~a~n~~g~~~~~~~l~v 316 (365)
|.|.|..|..+.++.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999998888765
No 33
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.45 E-value=2.7e-12 Score=99.74 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=83.2
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CC
Q psy3823 71 VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PP 149 (365)
Q Consensus 71 ~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~ 149 (365)
+|.|.+++..|+|.|+|.+.+..+.....++|.| ..+|.+.+.+.. ....+|+.+.|.|.+.|. |+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v---------~~~P~v~~~~~~----~~~~~~~~~~L~C~a~g~~P~ 68 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSV---------SEPPRVRLSLEK----LVSMIEEPQTLICHIAGYYPL 68 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEE---------ecCCceEEeCCC----ceeecCCcEEEEEEECCCCCC
Confidence 6899999999999999999987777778889999 668887765532 233478999999999985 44
Q ss_pred CCeeEEEeCCeEEee-----CC---------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823 150 YKKLIWTHNGITISN-----NA---------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200 (365)
Q Consensus 150 ~~~i~W~~~~~~l~~-----~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 200 (365)
...|.|+++|..... .. ..+.......|.+.....++.+.|+|.+.+....
T Consensus 69 ~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 69 DVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred CeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence 346999998754211 00 0111112345666655556778999999887543
No 34
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.45 E-value=8.2e-13 Score=94.60 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=72.0
Q ss_pred ceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823 225 VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE 304 (365)
Q Consensus 225 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~ 304 (365)
.+...+.. ..+..|+.+.|.|.+.+.|.+. +.|+++|.... ...+......+..+.|.|.++..+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~-~~v~~G~~~~l~c~~~~~p~~~-v~W~~~~~~l~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 2 VFTKKPKD-VTVKEGESVTLECEVSGNPPPT-VTWYKNGRPLT-SSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEESSE-EEEETTSEEEEEEEEEESSSSE-EEEEETTEEEE-SSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred EEEEecCC-EEEeCCCEEEEEEEEEeCCCCc-cccccccccee-eeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 34433433 3389999999999999999998 99999976443 344555555667889999999999999999999999
Q ss_pred CccceecEEEEE
Q psy3823 305 QGSQRTPCTFHV 316 (365)
Q Consensus 305 ~g~~~~~~~l~v 316 (365)
.|..+..+.|.|
T Consensus 79 ~g~~~~~~~l~V 90 (90)
T PF07679_consen 79 SGEATASVNLTV 90 (90)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEC
Confidence 999998888876
No 35
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.45 E-value=8.6e-13 Score=94.28 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=66.6
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC 100 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~ 100 (365)
...+.+|+.+.|.|.+.++|.| .+.|++++.. +................|.|.++..+|.|.|+|.|.|..|.....+
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLI-VIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEE-ccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 3448899999999998899999 9999999987 6543332222334456899999999999999999999999988877
Q ss_pred EEEE
Q psy3823 101 TFHV 104 (365)
Q Consensus 101 ~l~V 104 (365)
.|+|
T Consensus 87 ~L~v 90 (90)
T cd04972 87 QVTV 90 (90)
T ss_pred EEeC
Confidence 7764
No 36
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=4.4e-13 Score=91.99 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=59.7
Q ss_pred cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+|+.+.|.|.+.|.|.|. +.|++++..... ........+ ..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~-i~W~k~g~~~~~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPV-IAWTKGGSQLSV-DRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCE-EEEEECCEECCC-CCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 589999999999999998 999998864432 222222222 25999999999999999999999999998888765
No 37
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.44 E-value=6e-13 Score=94.87 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=64.2
Q ss_pred ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
+..+.+|++++|.|.+.|. .|. +.|++++..+... .........+|.|.+++++|+|.|+|.|.|..|...+..+.|
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~-i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATY-IWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCE-EEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 3478899999999999998 666 9999999887532 111122356899999999999999999999999887778877
Q ss_pred EE
Q psy3823 209 NI 210 (365)
Q Consensus 209 ~v 210 (365)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 76
No 38
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.44 E-value=1.3e-12 Score=93.04 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=67.5
Q ss_pred eeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 15 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 15 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
....+....+.+|+.+.|.|.+.++|.+ .++|++++.. +..... ....++ .|.|.+++.+|+|.|+|.|.|..|
T Consensus 4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~-~~~~~~-~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 4 IVVFPKDTYALKGQNVTLECFALGNPVP-QIKWRKVDGS-MPSSAE-ISMSGA---VLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred EEECCCceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCc-CCCccE-EEEeCC---EEEECCCCcccCEEEEEEEEECCC
Confidence 3445566778899999999999899999 9999998876 433322 112333 899999999999999999999999
Q ss_pred CCcccEEEEE
Q psy3823 95 NQRTPCTFHV 104 (365)
Q Consensus 95 ~~~~~~~l~V 104 (365)
.......|.|
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd04968 78 KDTHQGRIYV 87 (88)
T ss_pred cEEEEEEEEE
Confidence 9888888776
No 39
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.44 E-value=1.1e-12 Score=93.85 Aligned_cols=86 Identities=15% Similarity=0.231 Sum_probs=69.1
Q ss_pred CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCcee-EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
..+..+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +....... ....+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQD-IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG 83 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEE-CCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc
Confidence 45667889999999999998889999 9999999987 65443322 222333457999999999999999999999999
Q ss_pred CcccEEEEE
Q psy3823 96 QRTPCTFHV 104 (365)
Q Consensus 96 ~~~~~~l~V 104 (365)
...++.|.|
T Consensus 84 ~~~~~~v~~ 92 (92)
T cd05891 84 ETVDVTVSV 92 (92)
T ss_pred eeeEEEEEC
Confidence 887777764
No 40
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.43 E-value=1.4e-12 Score=89.91 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=59.8
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
|+.+.|.|.+.|.|.|. +.|+++|..........+.... ...|.|.+++.+|+|.|.|.|.|..|.....+.|.|.
T Consensus 1 G~~v~l~C~~~G~P~p~-i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 1 GETARLDCQVEGIPTPN-ITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CCeEEEEEEeeEeCCCe-EEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 68899999999999998 9999998754332222122111 1259999999999999999999999999988888773
No 41
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.43 E-value=7.5e-13 Score=90.12 Aligned_cols=73 Identities=21% Similarity=0.432 Sum_probs=59.4
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
|+.+.|.|.+.|.|.|. +.|++++... ....+..+..++ .|.|.+++.+|+|.|.|.|.|..|+...+..|.|
T Consensus 1 G~~~~l~C~~~g~P~p~-v~W~k~~~~l-~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPK-FSWSKGTELL-VNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCE-EEEEeCCEec-ccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 67899999999999998 9999987643 233333333333 4999999999999999999999999998888864
No 42
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.43 E-value=1.2e-12 Score=95.17 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=64.8
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe-----eCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI-----QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT 310 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~-----~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 310 (365)
+..|+.+.|.|.+.|+|+|. +.|+++|.+........... .....+.|.|..++.+|+|.|+|.|.|..|..+.
T Consensus 15 ~~~~~~~~l~~~v~g~P~P~-v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 15 ANLHEVKEFVVEVEAYPPPQ-IRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred EecCCcEEEEEEEEEeCCCc-eEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 77899999999999999998 99999997654322211111 1123467999999999999999999999999998
Q ss_pred cEEEEEE
Q psy3823 311 PCTFHVV 317 (365)
Q Consensus 311 ~~~l~v~ 317 (365)
++.|.|.
T Consensus 94 t~~l~V~ 100 (101)
T cd05859 94 TFALQIQ 100 (101)
T ss_pred EEEEEEE
Confidence 8888875
No 43
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.43 E-value=3.2e-12 Score=94.51 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=71.5
Q ss_pred cccCCeEeeCCceEEEEe---cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeE----ecCCeEEEEEEccCC-
Q psy3823 8 STDEPVCKQSQQRIYGAL---RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYS----IQDGSTSVARYTPTS- 78 (365)
Q Consensus 8 ~~~~p~~~~~~~~~~~v~---~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~----~~~~~~~~l~i~~~~- 78 (365)
|.|+|.+....+-...+. .|..++|.|.+.+.|.+ .++|++++.. +... ..... ......+.|.|.++.
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p-~i~W~k~g~~-l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~ 78 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV-QFRWAKNGVP-LDLGNPRYEETTEHTGTVHTSILTIINVSA 78 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCC-EEEEEECCEE-CCCCCCeEEEEeeccCccceeEEEECcCCc
Confidence 568888876544222222 56899999999899999 9999999987 6532 22111 112234689999997
Q ss_pred CCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 79 ELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 79 ~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
.+|.|.|+|.|.|..|.....+.|.|
T Consensus 79 ~~D~G~Y~C~A~N~~G~~~~~i~L~~ 104 (109)
T cd05773 79 ALDYALFTCTAHNSLGEDSLDIQLVS 104 (109)
T ss_pred cCCCEEEEEEEEeCCccCcEEEEEEe
Confidence 58999999999999999999999998
No 44
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.42 E-value=8.7e-13 Score=94.46 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=71.3
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT 98 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~ 98 (365)
+....+.+|+++.|.|.+.+.|.+ .+.|++++.. +................|.|.+++.+|.|.|+|.|.+..|....
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~ 84 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRP-LTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATA 84 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSS-EEEEEETTEE-EESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCC-cccccccccc-eeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEE
Confidence 467778999999999998788999 9999999988 77655555444457779999999999999999999999888877
Q ss_pred cEEEEE
Q psy3823 99 PCTFHV 104 (365)
Q Consensus 99 ~~~l~V 104 (365)
.+.|.|
T Consensus 85 ~~~l~V 90 (90)
T PF07679_consen 85 SVNLTV 90 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 777765
No 45
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.42 E-value=8.7e-13 Score=87.61 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=55.2
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
+.|.|.+.|.|+|. +.|+++|..... ....+.|.|.++..+|+|.|+|.|.|..|..++++.|+|.
T Consensus 1 ~~l~c~v~g~P~P~-v~W~kdg~~l~~---------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPE-FQWYKDGKLISG---------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCE-EEEEECCEECcc---------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47899999999998 999999875431 1233469999999999999999999999988888888764
No 46
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.42 E-value=8.2e-13 Score=90.38 Aligned_cols=73 Identities=18% Similarity=0.339 Sum_probs=61.2
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
|+.+.|.|.+.+.|.+ .++|++++.. +..........++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~-~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTEL-LTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEE-cccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7899999998899999 9999999988 6554443333344 7999999999999999999999999888777764
No 47
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.42 E-value=1.9e-12 Score=88.86 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=60.9
Q ss_pred eEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 241 QVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 241 ~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
.+.|.|.+.|.|.|. +.|+++|... ....+..+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~-v~W~k~g~~l-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPT-VTWSKDGKPL-KLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCe-EEEEECCEEc-CCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 368999999999998 9999998754 2233444445556778999999999999999999999999988887764
No 48
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.42 E-value=3.4e-12 Score=92.54 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=63.3
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP 311 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 311 (365)
+.+|+.+.|.|.+.|.|.|. +.|++++....... .+.........+.|.|.+++.+|+|.|.|.|.|..|..+.+
T Consensus 13 ~~~g~~v~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 91 (96)
T cd05732 13 AVELEQITLTCEAEGDPIPE-ITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS 91 (96)
T ss_pred EecCCcEEEEEEEeEcCCCc-EEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEE
Confidence 78899999999999999998 99999874332111 11222334456789999999999999999999999999888
Q ss_pred EEEEE
Q psy3823 312 CTFHV 316 (365)
Q Consensus 312 ~~l~v 316 (365)
+.|.|
T Consensus 92 ~~l~v 96 (96)
T cd05732 92 MYLEV 96 (96)
T ss_pred EEEeC
Confidence 77764
No 49
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.42 E-value=1.8e-12 Score=88.94 Aligned_cols=74 Identities=23% Similarity=0.192 Sum_probs=59.1
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeC-CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+.|.|.+.|.|.|. +.|++++........+.....+ .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~-v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQ-IFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCe-EEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999998 9999998755433334443333 34456999999999999999999999999988888764
No 50
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.42 E-value=2.3e-12 Score=91.40 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=62.9
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeE----ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCT 101 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~ 101 (365)
|+.++|.|.+.+.|.+ .++|++++.. +.... +... ......+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~~-i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDRI-INPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCEE-CCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 7899999998899999 9999999987 64332 2211 12344568999999999999999999999999999999
Q ss_pred EEE
Q psy3823 102 FHV 104 (365)
Q Consensus 102 l~V 104 (365)
|.|
T Consensus 79 L~V 81 (88)
T cd05735 79 LTV 81 (88)
T ss_pred EEE
Confidence 999
No 51
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.42 E-value=1.4e-12 Score=92.20 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=65.0
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP 99 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~ 99 (365)
...+.+|+.+.|.|.+.+.|.+ .++|+|++.. +...... ..........|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~-l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTP-TMRWLKNGKE-FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCC-EEEEEECCEE-CCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence 3567899999999998899999 9999999988 6543321 11112233479999999999999999999999988888
Q ss_pred EEEEE
Q psy3823 100 CTFHV 104 (365)
Q Consensus 100 ~~l~V 104 (365)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 87764
No 52
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.42 E-value=2.7e-12 Score=91.34 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=62.4
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eecEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTPCTF 314 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l 314 (365)
+..|+.+.|.|.+.|.|. . +.|+++++.......+..+..++..+.|.|.++..+|+|.|+|.|.|..|.. .+++.|
T Consensus 12 v~~G~~v~l~C~~~G~P~-~-v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l 89 (92)
T cd05866 12 LSVGESKFFTCTAIGEPE-S-IDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 89 (92)
T ss_pred EcCCCeEEEEEEEEEeCC-e-EEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence 789999999999999987 6 9999864433333344555556666789999999999999999999999985 566665
Q ss_pred EE
Q psy3823 315 HV 316 (365)
Q Consensus 315 ~v 316 (365)
.+
T Consensus 90 ~~ 91 (92)
T cd05866 90 EI 91 (92)
T ss_pred EE
Confidence 54
No 53
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.42 E-value=2.5e-12 Score=93.44 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=65.7
Q ss_pred CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC------CCceeEeeCCCEEEEEEcCCCcccCeE
Q psy3823 223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR------PLTSYSIQDGSTSVARYTPTSELEYGT 296 (365)
Q Consensus 223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~s~l~i~~v~~~d~G~ 296 (365)
+|.+.... . ..+.+|+.+.|.|.+.|.|.|. +.|++........ ..+.........+.|.|.+++.+|+|.
T Consensus 2 ~p~i~~~~-~-~~~~~G~~v~l~C~~~G~P~p~-i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~ 78 (98)
T cd05870 2 QPHIIQLK-N-ETTVENGAATLSCKAEGEPIPE-ITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGR 78 (98)
T ss_pred CCEEEeec-c-EEEcCCCcEEEEEecccCCCCe-EEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEE
Confidence 35554322 2 3388999999999999999998 9999953221111 112222333344679999999999999
Q ss_pred EEEEEEcCCccceecEEEEE
Q psy3823 297 LLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 297 Y~C~a~n~~g~~~~~~~l~v 316 (365)
|+|.|.|..|....++.|.|
T Consensus 79 Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 79 YDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEeccCCcceeEEEEeC
Confidence 99999999999988877754
No 54
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.42 E-value=2.7e-12 Score=91.88 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=63.8
Q ss_pred eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 313 (365)
.+.+|+.+.|.|.+.+.|.|. +.|++++..... ...+.. ...+..+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 12 ~v~eG~~v~L~C~v~g~P~p~-i~W~k~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 12 TIMEGKTLNLTCTVFGNPDPE-VIWFKNDQDIEL-SEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred EEcCCCEEEEEEEEEEeCCCe-EEEEECCEECCC-CCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 388999999999999999998 999998864432 222222 22333457999999999999999999999999988877
Q ss_pred EEE
Q psy3823 314 FHV 316 (365)
Q Consensus 314 l~v 316 (365)
|+|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 764
No 55
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.41 E-value=1.5e-12 Score=89.36 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=61.2
Q ss_pred cEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 29 QVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 29 ~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
.+.|.|.+.+.|.| .+.|+|++.. +..............+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKP-LKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEE-cCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999 9999999988 75444434334445678999999999999999999999998887777764
No 56
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.41 E-value=3.3e-12 Score=91.25 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=63.7
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+..|+.+.|.|.+.|.|.|. +.|+++|...... ...........+.|.|.++..+|.|.|+|.|.|..|....++.|.
T Consensus 12 v~~G~~v~l~C~~~G~P~p~-v~W~~~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 12 VYEGGTATIRCTAEGSPLPK-VEWIIAGLIVIQT-RTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EcCCCcEEEEEEEEEcCCCe-EEEEECCEEccCC-ccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 78999999999999999998 9999998743221 111222334456799999999999999999999999998888776
Q ss_pred E
Q psy3823 316 V 316 (365)
Q Consensus 316 v 316 (365)
|
T Consensus 90 v 90 (90)
T cd04972 90 V 90 (90)
T ss_pred C
Confidence 4
No 57
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.41 E-value=2.2e-12 Score=88.84 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=59.6
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
|+.+.|.|.+.|.|.|. +.|+++|..............++. .|.|.+++.+|+|.|.|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~-i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPS-ISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCe-EEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 67899999999999998 999999875432221111122332 5889999999999999999999999999998877
No 58
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.41 E-value=2.2e-12 Score=92.73 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=64.1
Q ss_pred ceEEEEecCCcEEEEEEeCCCCC-cceEEEEe-CCCcCCCC-CCcee-EecCCeEEEEEEccCCCCCCeEEEEEEEeCC-
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQ-AQYFTWAF-NNSGTAPR-PLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQ- 93 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~-~~~v~W~~-~~~~~l~~-~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~- 93 (365)
+....+.+|+.++|.|.+.+.|. + .++|++ ++.. +.. ..... ...+...++|.|.+++.+|+|.|+|.|.|..
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p-~i~W~~~~g~~-l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDK-DISWFSPNGEK-LTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCC-EEEEECCCCcC-ccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 34446889999999999889984 7 999998 6655 443 22222 2233345689999999999999999999986
Q ss_pred CCCcccEEEEE
Q psy3823 94 GNQRTPCTFHV 104 (365)
Q Consensus 94 ~~~~~~~~l~V 104 (365)
+....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 66668888776
No 59
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=2e-12 Score=89.21 Aligned_cols=74 Identities=23% Similarity=0.493 Sum_probs=60.3
Q ss_pred CCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC-CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNAS-AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210 (365)
Q Consensus 135 g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v 210 (365)
|+.+.|.|.+.|.|.|. +.|+++|.++..... ......++.|.|.+++..|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~-i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPN-ITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLL-ANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCe-EEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEE-EEEEEEE
Confidence 68899999999999887 999999998865332 23444567899999999999999999999999765 4555554
No 60
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.40 E-value=2e-12 Score=93.52 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=67.2
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT 98 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~ 98 (365)
.....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +........ .....+.|.|.+++.+|.|.|+|.|.|..|....
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~-~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEP-TMTWTKDGEP-IESGEEKYS-FNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEA 86 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCC-EEEEEECCEE-CcCCCCEEE-EeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence 345678899999999999899999 9999999987 654422121 1122237999999999999999999999999888
Q ss_pred cEEEEE
Q psy3823 99 PCTFHV 104 (365)
Q Consensus 99 ~~~l~V 104 (365)
.+.|.|
T Consensus 87 ~~~L~V 92 (95)
T cd05730 87 EIHLKV 92 (95)
T ss_pred EEEEEE
Confidence 888888
No 61
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.40 E-value=1.9e-12 Score=91.53 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=62.2
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+..|+.+.|.|.+.|.|.|. +.|+++|...........+........|.|.++..+|+|.|+|.|.|..|+...++.|.
T Consensus 6 v~~G~~~~L~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 6 VPAANTVKFRCPAAGNPTPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred cCCCCEEEEEEEcCCCCCCE-EEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 77899999999999999998 99999987543322111111112234589999999999999999999999999888876
Q ss_pred E
Q psy3823 316 V 316 (365)
Q Consensus 316 v 316 (365)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 5
No 62
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.40 E-value=1.1e-12 Score=89.62 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=57.8
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.+.|.| .+.|+|++.. +... .+... ..+....+|.|.+++.+|+|.|+|.|.|..|.......|.|
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~-i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEM-VQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEE-CcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5799999999999 9999999988 6533 22222 22233347999999999999999999999998887777764
No 63
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.39 E-value=5.4e-12 Score=91.67 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCC--CcCCCCC-----CceeEecCCeEEEEEEccCCCCCCe
Q psy3823 11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNN--SGTAPRP-----LTSYSIQDGSTSVARYTPTSELEYG 83 (365)
Q Consensus 11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~--~~~l~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G 83 (365)
+|.+.. .+...+.+|+.++|.|.+.+.|.+ .+.|+++. .. +... .............|.|.+++.+|+|
T Consensus 2 ~p~i~~--~~~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~-~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ--LKNETTVENGAATLSCKAEGEPIP-EITWKRASDGHT-FSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe--eccEEEcCCCcEEEEEecccCCCC-eEEEEECCCCce-eccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 355533 456778999999999999899999 99999953 32 2211 1111222233458999999999999
Q ss_pred EEEEEEEeCCCCCcccEEEEE
Q psy3823 84 TLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 84 ~Y~C~a~~~~~~~~~~~~l~V 104 (365)
.|+|.|.|..|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999998887777764
No 64
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.39 E-value=3.6e-12 Score=86.58 Aligned_cols=71 Identities=17% Similarity=0.335 Sum_probs=56.6
Q ss_pred eEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 241 QVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 241 ~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
++.|.|.+.|.|.|. +.|+++|..... ........++. |.|.+++.+|+|.|+|.|.|..|+.+.++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~-v~W~k~g~~~~~-~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPT-VKWVKNGDMVIP-SDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCE-EEEEECCeECCC-CCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 378999999999998 999999875432 23333333443 778899999999999999999999998888764
No 65
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.39 E-value=5.5e-12 Score=93.27 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCceecCccceeee---ecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe--eC--CCEEEEEEcCCC-ccc
Q psy3823 222 DEPVCKQSQQRIYGA---LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI--QD--GSTSVARYTPTS-ELE 293 (365)
Q Consensus 222 ~~p~~~~~~~~~~~~---~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~--~~--~~~s~l~i~~v~-~~d 293 (365)
++|.+...+.....+ ..|..+.|.|.+.|.|++. +.|+++|........++... .. ...+.|.|.++. .+|
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~-i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQ-FRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCE-EEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 566665544321212 2467899999999999998 99999987543322233211 11 224679999987 589
Q ss_pred CeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823 294 YGTLLCWARNEQGSQRTPCTFHVVKAG 320 (365)
Q Consensus 294 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 320 (365)
.|.|+|.|.|..|.....+.|.|...+
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 999999999999999999999887553
No 66
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.39 E-value=5.2e-12 Score=90.81 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=61.5
Q ss_pred eecCceEEEEEEEeeeCC-CceeEEEe-CCCCCCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCC-ccceec
Q psy3823 236 ALRNEQVLVSCTVDANPQ-AQYFTWAF-NNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQ-GSQRTP 311 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~-~~~~~W~~-~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~-g~~~~~ 311 (365)
+..|+.+.|.|.+.|.|. |. +.|++ ++........+... ..+...+.|.|.+++.+|+|.|+|.|.|.+ |....+
T Consensus 12 v~~G~~v~l~C~v~G~P~~p~-i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 12 ISVGESKFFLCQVAGEAKDKD-ISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred ECCCCeEEEEEEEeCCCCCCE-EEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 788999999999999985 67 99998 55433222223222 223345789999999999999999999997 888888
Q ss_pred EEEEE
Q psy3823 312 CTFHV 316 (365)
Q Consensus 312 ~~l~v 316 (365)
+.|.|
T Consensus 91 ~~l~v 95 (96)
T cd05865 91 VNVKI 95 (96)
T ss_pred EEEEE
Confidence 87765
No 67
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.38 E-value=3.8e-12 Score=90.72 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=63.3
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR- 97 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~- 97 (365)
.....+.+|++++|.|.+.+. .+ .+.|++++.. +..... ....+ ...|.|.+++.+|.|.|+|.|.|..|...
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~-l~~~~~-~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSL-LVPPRL-QLSND--NRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CC-EEEEEECCEE-CCCCCE-EEeCC--CCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 345678899999999998888 88 9999999987 654332 22222 12799999999999999999999999765
Q ss_pred ccEEEEE
Q psy3823 98 TPCTFHV 104 (365)
Q Consensus 98 ~~~~l~V 104 (365)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 6777776
No 68
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.38 E-value=5.6e-12 Score=90.67 Aligned_cols=75 Identities=25% Similarity=0.431 Sum_probs=60.3
Q ss_pred cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDLN 209 (365)
Q Consensus 134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l~ 209 (365)
.|+++.|.|.+.|+|.+. ++|+++|..+...........++.|.|.+.. ..|+|.|+|.|.|..|...++.+.|.
T Consensus 18 ~g~~v~l~C~a~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 18 PEEKVTLGCRARASPPAT-YRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CCCeEEEEeEceeCCCCE-EEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 357899999999999887 9999999998644334445556789998865 59999999999999998776665553
No 69
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.38 E-value=3.3e-12 Score=92.75 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=66.9
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe-c-----CCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-Q-----DGSTSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~-----~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
...+..|+.+.|.|.+.+.|.| .+.|+|++.. +......... . ....++|.|.+++.+|+|.|+|.|.|..|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~-l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP-QIRWLKDNRT-LIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC-ceEEEECCEE-CcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 5667889999999999999999 9999999998 6654432211 1 12235899999999999999999999999
Q ss_pred CCcccEEEEE
Q psy3823 95 NQRTPCTFHV 104 (365)
Q Consensus 95 ~~~~~~~l~V 104 (365)
..+.++.|.|
T Consensus 90 ~~~~t~~l~V 99 (101)
T cd05859 90 VKSYTFALQI 99 (101)
T ss_pred eEEEEEEEEE
Confidence 8888888876
No 70
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.38 E-value=2.2e-12 Score=87.66 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=57.2
Q ss_pred cEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 29 QVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 29 ~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
++.|.|.+.|.|.| .++|+|++.. +..........++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~-~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDM-VIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeE-CCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999 9999999987 5544433333334 5778899999999999999999999887777764
No 71
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.38 E-value=6.7e-12 Score=88.31 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=61.8
Q ss_pred ceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCC--Cce-eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 240 EQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRP--LTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 240 ~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~--~~~-~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+++.|.|.+.|.|.|. .+.|+++|....... ... ........+.|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 4689999999999874 489999986543221 121 122223345799999999999999999999999999999999
Q ss_pred EEcC
Q psy3823 316 VVKA 319 (365)
Q Consensus 316 v~~~ 319 (365)
|..+
T Consensus 81 V~~~ 84 (85)
T cd05854 81 VRGP 84 (85)
T ss_pred EECC
Confidence 8754
No 72
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.37 E-value=1.3e-12 Score=86.86 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.+.|.| .++|+|++.. +... ...+.|.|.++..+|+|.|+|.|.|..|....++.+++
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~-l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKL-ISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEE-Cccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 4799999999999 9999999988 6521 12348999999999999999999999998777766665
No 73
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.37 E-value=4.4e-12 Score=87.58 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=60.1
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
|+.+.|.|.+.|.|.|. +.|+++|.............. ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~-i~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPT-ITWRLNGVPIEELPPDPRRRV--DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCE-EEEEECCEECCCCCCcceEEc--cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 68899999999999998 999998875433222211111 22459999999999999999999999999998888773
No 74
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.37 E-value=4e-12 Score=90.48 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=65.2
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeC-CCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN-NSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
++....+.+|+++.|.|.+.+.|. .++|+++ +.. +....+.....++....|.|.++..+|+|.|+|.|.|..|..
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~-~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEK-IVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeE-ecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 345567889999999999888885 7999985 444 544444444455556789999999999999999999998876
Q ss_pred c-ccEEEEE
Q psy3823 97 R-TPCTFHV 104 (365)
Q Consensus 97 ~-~~~~l~V 104 (365)
. .++.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 4 7777765
No 75
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.37 E-value=8.9e-12 Score=90.34 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=62.7
Q ss_pred EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-----eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-----SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT 98 (365)
Q Consensus 24 v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~ 98 (365)
+..|+.++|.|.+.+.|.| .++|++++.. +..... .....+...+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus 14 ~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~-~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 14 MELEEQITLTCEASGDPIP-SITWRTSTRN-ISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred EEcCCCEEEEEEeeEeCCC-EEEEEECCcc-ccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 4558999999998899999 9999998876 543211 11223344568999999999999999999999999888
Q ss_pred cEEEEE
Q psy3823 99 PCTFHV 104 (365)
Q Consensus 99 ~~~l~V 104 (365)
++.|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 877764
No 76
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.37 E-value=5.8e-12 Score=89.64 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=61.1
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+.+|+.+.|.|.+.|.|.|. +.|++++...... .... . ....|.|.+++.+|+|.|.|.|.|..|..+.+..|.
T Consensus 13 ~~~g~~v~l~C~~~g~P~p~-v~W~k~~~~~~~~-~~~~-~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 86 (88)
T cd04968 13 ALKGQNVTLECFALGNPVPQ-IKWRKVDGSMPSS-AEIS-M---SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY 86 (88)
T ss_pred EeCCCcEEEEEEeeEeCCCE-EEEEECCCcCCCc-cEEE-E---eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence 78999999999999999998 9999987643221 1111 1 223599999999999999999999999998888887
Q ss_pred E
Q psy3823 316 V 316 (365)
Q Consensus 316 v 316 (365)
|
T Consensus 87 V 87 (88)
T cd04968 87 V 87 (88)
T ss_pred E
Confidence 6
No 77
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.37 E-value=3.6e-12 Score=88.38 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=56.8
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
|+++.|.|.+.+.|.| .++|++++.. +....+...........|.|.+++.+|.|.|+|.|.|..|...
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 69 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGH-VPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVF 69 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeE-CCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence 7899999998899999 9999999887 6554433333344456899999999999999999999998765
No 78
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.37 E-value=1.5e-11 Score=95.57 Aligned_cols=119 Identities=20% Similarity=0.336 Sum_probs=83.8
Q ss_pred eEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCC
Q psy3823 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQA 254 (365)
Q Consensus 176 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~ 254 (365)
+|.|.+++..|+|.|.|.+.+..+... ..+.|.|. .+|.+........ ...|+.+.|.|.+.+. |.+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~----------~~P~v~~~~~~~~-~~~~~~~~L~C~a~g~~P~~ 69 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQ-QIIQLSVS----------EPPRVRLSLEKLV-SMIEEPQTLICHIAGYYPLD 69 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCccee-eEEEEEEe----------cCCceEEeCCCce-eecCCcEEEEEEECCCCCCC
Confidence 688999999999999999998777654 67889998 8887764443322 3478889999999986 443
Q ss_pred ceeEEEeCCCCCCCC---CCc-----eeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823 255 QYFTWAFNNSDTAPR---PLT-----SYSIQDGST---SVARYTPTSELEYGTLLCWARNEQG 306 (365)
Q Consensus 255 ~~~~W~~~~~~~~~~---~~~-----~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g 306 (365)
..+.|+++|...... ... .....+++. +.|.+.....++.+.|+|.+.+..-
T Consensus 70 ~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 70 VQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred eEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 249999987542210 011 122344543 5677776666667899999988644
No 79
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.37 E-value=2.6e-12 Score=88.44 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=55.8
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+.|.|.+.|.|.|. +.|++++..........++........|.|.+++.+|+|.|.|.|.|..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~-v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQ-IAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCE-EEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 46899999999998 999998763222211112211112235899999999999999999999999999888877
No 80
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.37 E-value=7e-12 Score=90.89 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=66.4
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-----eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-----SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 93 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~ 93 (365)
.....+.+|+++.|.|.+.+.|.+ .+.|++++.. +..... .........+.|.|.+++.+|+|.|+|.|.|..
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 85 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIP-EITWRRATRN-FSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRI 85 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCC-cEEEEECCcc-cCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCC
Confidence 345678899999999998899999 9999999866 543211 122233445689999999999999999999999
Q ss_pred CCCcccEEEEE
Q psy3823 94 GNQRTPCTFHV 104 (365)
Q Consensus 94 ~~~~~~~~l~V 104 (365)
|....++.|.|
T Consensus 86 G~~~~s~~l~v 96 (96)
T cd05732 86 GGDQQSMYLEV 96 (96)
T ss_pred CCcEEEEEEeC
Confidence 99887777764
No 81
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.37 E-value=6.7e-12 Score=87.17 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=61.3
Q ss_pred eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823 20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP 99 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~ 99 (365)
....+.+|+.+.|.|.+.+. .+ .+.|+|++.. +........ ... .|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~-l~~~~~~~~-~~~---~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQ-LGENNRTRI-TGE---EVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-Cc-eEEEeeCCcC-CCCCceEEE-eCC---EEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 34678899999999997775 56 8999999988 765443332 222 79999999999999999999988877666
Q ss_pred EEEEE
Q psy3823 100 CTFHV 104 (365)
Q Consensus 100 ~~l~V 104 (365)
+.|+|
T Consensus 75 ~~v~V 79 (79)
T cd04973 75 FSVNV 79 (79)
T ss_pred EEEeC
Confidence 66653
No 82
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.37 E-value=8.3e-12 Score=86.52 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=59.4
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
|+.+.|.|.+.|.|.|. +.|++++.... ...+......+....|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~-v~W~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPI-INWRLNWGHVP-DSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCE-EEEEECCeECC-CCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 68899999999999998 99999876432 22333444455567899999999999999999999999876555443
No 83
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.36 E-value=4.1e-12 Score=90.10 Aligned_cols=79 Identities=22% Similarity=0.442 Sum_probs=63.4
Q ss_pred cceecCCcEEEEEEE-EecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 130 SVLNEGVDIYFDCHI-QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~-~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
..+.+|+++.|.|.+ .+.|.+. +.|++++..+...........++.|.|.++..+|+|.|+|.+.|..|...+..+.|
T Consensus 6 ~~~~~G~~v~l~C~~~~g~p~p~-i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l 84 (86)
T cd05724 6 TQVAVGEMAVLECSPPRGHPEPT-VSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARL 84 (86)
T ss_pred EEEeCCCCEEEEEECCCCCCCCE-EEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence 467799999999998 5777776 99999999887543333333467899999999999999999999999876666655
Q ss_pred E
Q psy3823 209 N 209 (365)
Q Consensus 209 ~ 209 (365)
.
T Consensus 85 ~ 85 (86)
T cd05724 85 S 85 (86)
T ss_pred E
Confidence 4
No 84
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.36 E-value=4.2e-12 Score=86.83 Aligned_cols=73 Identities=18% Similarity=0.348 Sum_probs=59.0
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
|+.+.|.|.+.|.|.|. +.|++++.... ...+..+..++ .|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~-v~W~k~~~~~~-~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPT-ISWSKGTELLT-NSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCE-EEEEECCEEcc-cCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999999999998 99999886432 22333333333 4999999999999999999999999998888765
No 85
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.36 E-value=2.9e-12 Score=87.64 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=57.8
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.|.|.| .++|+|++.. +.... ..... .+.....|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~-l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENES-LTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEE-CCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999999999 9999999988 65432 22222 2223347999999999999999999999999887777764
No 86
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.36 E-value=7.5e-12 Score=91.48 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=60.1
Q ss_pred ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeC----CCCceEEeeceEEEee-----ecCCCCeEEEEEEEcCCC
Q psy3823 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNN----ASAGRIITNQTLVLQS-----VTRHSGGLYACSAINSQG 199 (365)
Q Consensus 129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~----~~~~~~~~~~~l~i~~-----~~~~d~G~Y~C~~~~~~~ 199 (365)
+..+.+|+.+.|.|.+.|.|.|. +.|+++|..+... ........++.+.+.. +..+|+|.|+|.+.|..|
T Consensus 10 ~~~v~~G~~~~l~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G 88 (100)
T cd07693 10 DLIVSKGDPATLNCKAEGRPTPT-IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLG 88 (100)
T ss_pred eeEEcCCCeEEEEeeCCcCCCCE-EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccc
Confidence 34688999999999999999887 9999999988652 1112223333333322 368999999999999999
Q ss_pred CCCcccEEEEE
Q psy3823 200 EGGSTPFDLNI 210 (365)
Q Consensus 200 ~~~s~~~~l~v 210 (365)
...+..+.|.|
T Consensus 89 ~~~s~~~~l~v 99 (100)
T cd07693 89 EAVSRNASLEV 99 (100)
T ss_pred ceecceEEEEe
Confidence 86667777765
No 87
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.36 E-value=7.9e-12 Score=89.84 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=59.8
Q ss_pred cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
+|+.+.|.|.+.|.|.|. +.|+++|..+...........++.|.|.++. ..|+|.|+|.|.|..|...++.+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P~-i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVPT-YRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCCE-EEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 578999999999999987 9999999988643333344456789998875 6999999999999999776555544
No 88
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.35 E-value=4.4e-12 Score=87.31 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=60.1
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
|+.+.|.|.+.++|.| .|+|++++.. +..... .....++ ..|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~-i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVP-IEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEE-ccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7899999999999999 9999999988 643222 1111222 26889999999999999999999999988888877
No 89
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=4e-12 Score=86.31 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=56.9
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.+.|.| .+.|+|++.. +..........+ ..|.|.+++.+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~-~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGP-LSPNRTKKLNNN---KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcC-CCCCceeEEcCC---CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999 9999999887 544322222222 38999999999999999999999999888888876
No 90
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=3.1e-12 Score=88.36 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
|+.+.|.|.+.++|.| .+.|++++.. +........ .......|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~-~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVP-IEELPPDPR-RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEE-CCCCCCcce-EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999899999 9999999987 544332111 1112237999999999999999999999999888888876
No 91
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.35 E-value=4.2e-12 Score=89.60 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=66.0
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +....... ..++ .|.|.+++.+|.|.|+|.|.|..|...
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~-~~~~~~~~-~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRP-AYRWLKNGQP-LASENRIE-VEAG---DLRITKLSLSDSGMYQCVAENKHGTIY 78 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEE-CCCCCeEE-EeCC---EEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence 3455678899999999999999999 9999999988 65443322 2333 799999999999999999999999877
Q ss_pred ccEEEEE
Q psy3823 98 TPCTFHV 104 (365)
Q Consensus 98 ~~~~l~V 104 (365)
.++.|+|
T Consensus 79 ~~~~l~V 85 (85)
T cd05728 79 ASAELAV 85 (85)
T ss_pred EEEEEEC
Confidence 7777654
No 92
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.34 E-value=1.6e-11 Score=87.07 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=62.4
Q ss_pred CceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCC-CceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 18 QQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
++....+.+|+++.|.|.+ .+.|.+ .+.|++++.. +... .......++ .|.|.+++.+|.|.|+|.|.|..|.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~-~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQP-LNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEE-CCCCCCCEEEccCC---EEEEeECCcccCEEEEEEEEeccCc
Confidence 3456778899999999996 788999 9999999987 5542 222222233 7999999999999999999999887
Q ss_pred Cc-ccEEEE
Q psy3823 96 QR-TPCTFH 103 (365)
Q Consensus 96 ~~-~~~~l~ 103 (365)
.. ..+.|.
T Consensus 77 ~~s~~~~l~ 85 (86)
T cd05724 77 RESAAARLS 85 (86)
T ss_pred eeeeeEEEE
Confidence 64 455554
No 93
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.34 E-value=5.4e-12 Score=90.43 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=61.7
Q ss_pred EEEEecCCcEEEEEEeCC-----CCCcceEEEEeCCCcCCCCCC--ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823 21 IYGALRNEQVLVSCTVDA-----NPQAQYFTWAFNNSGTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 93 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~-----~p~~~~v~W~~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~ 93 (365)
...+.+|+.+.|.|.+.+ .|.+ .++|||++.. +.... ..+.... ...|.|.+++.+|+|.|+|.+.|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~-~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGK-TPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCC-Ccccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCC
Confidence 455779999999999777 6888 9999999876 43221 1222221 2379999999999999999999999
Q ss_pred CCCcccEEEEE
Q psy3823 94 GNQRTPCTFHV 104 (365)
Q Consensus 94 ~~~~~~~~l~V 104 (365)
+..+..+.|+|
T Consensus 84 g~~~~~~~L~v 94 (94)
T cd05756 84 YCMKVSISLTV 94 (94)
T ss_pred ccEEEEEEEEC
Confidence 88877777764
No 94
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.33 E-value=7.4e-12 Score=85.89 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=57.6
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
++|.|.+.+.|.| .+.|+|++.. +... ...... ......+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~-i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEM-LTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEE-CCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 4799999999999 9999999988 6543 222222 2233447999999999999999999999998887777754
No 95
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=7.8e-12 Score=85.82 Aligned_cols=74 Identities=15% Similarity=0.368 Sum_probs=58.0
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
|+.+.|.|.+.+.|.+ .+.|++++...+..........++ +|.|.+++.+|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999998899999 999998544325444333333444 7999999999999999999999998877777664
No 96
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.33 E-value=8.1e-12 Score=84.80 Aligned_cols=70 Identities=20% Similarity=0.422 Sum_probs=55.5
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+.|.|.+.|.|.|. +.|++++...... ..... .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~-v~W~k~~~~~~~~--~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPE-VHWDRIDGPLSPN--RTKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCe-EEEEECCcCCCCC--ceeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46899999999998 9999988644321 11111 12236999999999999999999999999998888876
No 97
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.33 E-value=9e-12 Score=85.35 Aligned_cols=72 Identities=21% Similarity=0.433 Sum_probs=58.3
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc-eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNNASAG-RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v 210 (365)
++|.|.+.|.|.|. +.|++++.++......+ ....++.|.|.++...|+|.|+|.|.|..|...+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPE-ITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCE-EEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999988 99999998886432222 23346689999999999999999999999987667777765
No 98
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.33 E-value=1.8e-11 Score=89.46 Aligned_cols=91 Identities=15% Similarity=0.288 Sum_probs=62.7
Q ss_pred CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC----CCceeEeeCCCEEEEEEc--CCCcccCeEE
Q psy3823 224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR----PLTSYSIQDGSTSVARYT--PTSELEYGTL 297 (365)
Q Consensus 224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~s~l~i~--~v~~~d~G~Y 297 (365)
|.+...+.. ..+.+|+.+.|.|.+.|.|.|. +.|+++|...... ........++....+.+. .+..+|+|.|
T Consensus 2 P~i~~~p~~-~~v~~G~~~~l~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 2 PRIVEHPSD-LIVSKGDPATLNCKAEGRPTPT-IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CeEEecCce-eEEcCCCeEEEEeeCCcCCCCE-EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 444443333 3388999999999999999998 9999998754331 111222334443334333 3468999999
Q ss_pred EEEEEcCCcc-ceecEEEEE
Q psy3823 298 LCWARNEQGS-QRTPCTFHV 316 (365)
Q Consensus 298 ~C~a~n~~g~-~~~~~~l~v 316 (365)
+|.|.|..|. .+..+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 667777765
No 99
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.32 E-value=1.2e-11 Score=87.09 Aligned_cols=75 Identities=19% Similarity=0.397 Sum_probs=59.4
Q ss_pred CcEEEEEEEEecCCCC-eeEEEeCCeEEeeCCC--Cc-eE---EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 136 VDIYFDCHIQANPPYK-KLIWTHNGITISNNAS--AG-RI---ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 136 ~~v~l~C~~~~~p~~~-~i~W~~~~~~l~~~~~--~~-~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
+.++|.|.+.|.|.|. .+.|++||..+..... .. .. ...++|.|.+++..|+|.|+|.|.|..|... ..+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~-~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS-ASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE-EEEEE
Confidence 4689999999998774 4899999998864321 11 11 1346899999999999999999999998766 67888
Q ss_pred EEe
Q psy3823 209 NIN 211 (365)
Q Consensus 209 ~v~ 211 (365)
.|.
T Consensus 80 ~V~ 82 (85)
T cd05854 80 VVR 82 (85)
T ss_pred EEE
Confidence 887
No 100
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.32 E-value=4.8e-12 Score=85.44 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=55.4
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTF 102 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l 102 (365)
+.|.|.+.+.|.+ .++|+|++.. +..........++ .|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~~-~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGVQ-VTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCEE-CCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999899999 9999999987 6544433333333 79999999999999999999999988766665
No 101
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.32 E-value=1.6e-11 Score=84.72 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=53.8
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
++|.|.+.|.|.|. +.|+++|...........+... ...|.|.+++.+|+|.|.|.|.|..|....+..++|
T Consensus 1 v~L~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPT-YQWFRDGTPLSDGQGNYSVSSK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCc-EEEEECCEECCCCCccEEEeCC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 47999999999998 9999998754332222233222 236999999999999999999999998754444444
No 102
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.32 E-value=1.7e-11 Score=87.73 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=61.5
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeC-CCcCCCC-CCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN-NSGTAPR-PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
++....+.+|+++.|.|.+.+.| + .++|+++ +.. +.. ............+.|+|.+++.+|.|.|+|.|.|..|.
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-K-DISWFSPNGEK-LVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-C-eEEEECCCCCE-eccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 44556789999999999987876 5 8999984 444 433 22222234445678999999999999999999998654
Q ss_pred -CcccEEEEE
Q psy3823 96 -QRTPCTFHV 104 (365)
Q Consensus 96 -~~~~~~l~V 104 (365)
...++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 446666653
No 103
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.32 E-value=1e-11 Score=85.53 Aligned_cols=69 Identities=22% Similarity=0.478 Sum_probs=54.6
Q ss_pred cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN 209 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~ 209 (365)
..+.+|++|+|.|.+.+.|.+..+.|++||..+.. ....|.|.++ .+|+|.|+|++.+. ..+..+.|+
T Consensus 10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~ 77 (78)
T cd05752 10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLE 77 (78)
T ss_pred eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEe
Confidence 46789999999999998876655999999998742 3468899999 99999999999875 333455554
Q ss_pred E
Q psy3823 210 I 210 (365)
Q Consensus 210 v 210 (365)
|
T Consensus 78 V 78 (78)
T cd05752 78 V 78 (78)
T ss_pred C
Confidence 3
No 104
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.31 E-value=8.9e-12 Score=85.53 Aligned_cols=74 Identities=15% Similarity=0.381 Sum_probs=57.0
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
|+.+.|.|.+.|.|.|. +.|++++..............++ .|.|..+..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~-v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPA-IHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCE-EEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 68899999999999998 99997544333322323322332 4889999999999999999999999988877764
No 105
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.31 E-value=2.5e-11 Score=88.17 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=61.3
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC-CceeEee----CCCEEEEEEcCCCccc-CeEEEEEEEcCCccce
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-LTSYSIQ----DGSTSVARYTPTSELE-YGTLLCWARNEQGSQR 309 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~-~~~~~~~----~~~~s~l~i~~v~~~d-~G~Y~C~a~n~~g~~~ 309 (365)
+..|+.+.|.|.+.|.|.|..+.|++++....... .++.+.. .+..+.|.|.++..+| .|.|.|.|.|..|..+
T Consensus 13 ~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~ 92 (98)
T cd05758 13 AILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGT 92 (98)
T ss_pred EeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCccc
Confidence 78999999999999999983399999886443322 2333322 2345689999999855 8999999999999988
Q ss_pred ecEEE
Q psy3823 310 TPCTF 314 (365)
Q Consensus 310 ~~~~l 314 (365)
..+.|
T Consensus 93 ~~~~L 97 (98)
T cd05758 93 AIISL 97 (98)
T ss_pred EEEEe
Confidence 87665
No 106
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.31 E-value=9.3e-12 Score=85.63 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=55.2
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.+.|.| .++|+|++....................|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999 9999999864132222111111111237999999999999999999999998888888876
No 107
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.31 E-value=1.4e-11 Score=86.92 Aligned_cols=77 Identities=19% Similarity=0.403 Sum_probs=63.2
Q ss_pred ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
+..+..|+.+.|.|.+.|.|.|. +.|++++..+... ......++.|.|.++..+|+|.|+|.|.|..|... ..+.|
T Consensus 8 ~~~~~~G~~~~l~C~~~g~p~p~-v~W~k~g~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l 83 (85)
T cd05728 8 DTEADIGSSLRWECKASGNPRPA-YRWLKNGQPLASE--NRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY-ASAEL 83 (85)
T ss_pred ccEEcCCCcEEEEEEeeEeCCCE-EEEEECCEECCCC--CeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE-EEEEE
Confidence 34678999999999999999887 9999999987542 23445678999999999999999999999999654 44554
Q ss_pred E
Q psy3823 209 N 209 (365)
Q Consensus 209 ~ 209 (365)
.
T Consensus 84 ~ 84 (85)
T cd05728 84 A 84 (85)
T ss_pred E
Confidence 4
No 108
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.30 E-value=9.6e-12 Score=87.29 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=62.8
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC 100 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~ 100 (365)
.+.+..|+++.|.|.+.+.|.+ .+.|++++.. +....... .......|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~-~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRP-DITWLKDNKP-LTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCC-cEEEEECCcC-CcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence 3456789999999998889999 9999999987 54332211 122335899999999999999999999998877766
Q ss_pred EEEE
Q psy3823 101 TFHV 104 (365)
Q Consensus 101 ~l~V 104 (365)
.|.|
T Consensus 79 ~v~v 82 (82)
T cd05856 79 KVDV 82 (82)
T ss_pred EEeC
Confidence 6653
No 109
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.30 E-value=2.8e-11 Score=84.86 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=60.8
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
...|+.+.|.|.+.+.|.|. +.|++++........ . ........|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~-i~W~k~~~~~~~~~~-~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPD-ITWLKDNKPLTPTEI-G--ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCc-EEEEECCcCCcCCcc-c--eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 66799999999999999998 999998875432211 1 1222345799999999999999999999999988777765
Q ss_pred E
Q psy3823 316 V 316 (365)
Q Consensus 316 v 316 (365)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 4
No 110
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.30 E-value=1.5e-11 Score=83.38 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=56.0
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
+.|.|.+.|.|+|. +.|+++|...... . +.... ...|.|.+++.+|+|.|+|.|.|..|..+.++.++|.
T Consensus 1 ~~l~c~v~g~P~p~-v~W~k~g~~l~~~-~--~~~~~--~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPE-IQWYKNGKLISEK-N--RTKKS--GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCE-EEEEECCEECCCC-C--EEEcC--CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 46899999999998 9999998754332 1 22222 2459999999999999999999999998888888764
No 111
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.29 E-value=1.6e-11 Score=82.59 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=54.8
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
+.|.|.+.|.|.|. +.|+++|...... .... .+ ..|.|.++..+|+|.|+|.|.|..|..+...+++++
T Consensus 1 ~~~~c~v~G~P~P~-v~W~k~g~~l~~~---~~~~-~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPE-VKWYKNGQLIVLN---HTFK-RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCE-EEEEECCEECCCC---CEEc-cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 36899999999998 9999998754322 1111 12 359999999999999999999999988777777664
No 112
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.29 E-value=2.4e-11 Score=85.83 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=60.4
Q ss_pred ceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCC--ce-eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 240 EQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPL--TS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 240 ~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~--~~-~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+.+.|.|.+.+.|.|. .+.|+++|........ .. ........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 4689999999998874 3799998875432211 11 111122344699999999999999999999999999999998
Q ss_pred EEcC
Q psy3823 316 VVKA 319 (365)
Q Consensus 316 v~~~ 319 (365)
|..+
T Consensus 81 V~~p 84 (85)
T cd04970 81 VRGP 84 (85)
T ss_pred EECC
Confidence 8764
No 113
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.29 E-value=2.4e-11 Score=86.78 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=60.3
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCC-------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP 311 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 311 (365)
|+.+.|.|.+.+.|.|. +.|+++|..... ...++....+ ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 1 G~~v~L~C~~~g~P~p~-v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPA-IFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCE-EEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence 68899999999999998 999998763211 1112222222 259999999999999999999999999999
Q ss_pred EEEEEEcC
Q psy3823 312 CTFHVVKA 319 (365)
Q Consensus 312 ~~l~v~~~ 319 (365)
+.|.|...
T Consensus 77 ~~l~V~~~ 84 (90)
T cd05726 77 AYLEVTDV 84 (90)
T ss_pred EEEEEeec
Confidence 99988743
No 114
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.29 E-value=6.4e-11 Score=84.78 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=63.2
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-CCceeE----eeCCCEEEEEEcCCCccc-CeEEEEEEEcCCccce
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-PLTSYS----IQDGSTSVARYTPTSELE-YGTLLCWARNEQGSQR 309 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-~~~~~~----~~~~~~s~l~i~~v~~~d-~G~Y~C~a~n~~g~~~ 309 (365)
+..|+.+.|.|.+.+.|+|..+.|.+++...... ..++.+ ...+..+.|.|.++...| .|.|.|.|.|.+|+.+
T Consensus 13 ~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~ 92 (98)
T cd05898 13 AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT 92 (98)
T ss_pred EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence 8899999999999999988778998887643332 234433 234678999999998777 7999999999999998
Q ss_pred ecEEE
Q psy3823 310 TPCTF 314 (365)
Q Consensus 310 ~~~~l 314 (365)
..++|
T Consensus 93 ~~i~L 97 (98)
T cd05898 93 AIIQL 97 (98)
T ss_pred EEEEe
Confidence 87766
No 115
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.29 E-value=1.6e-11 Score=82.90 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=55.4
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
++|.|.+.+.|.+ .+.|+|++.. +..... ...... .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~-~~~~~~-~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGE-LPKGRA-EILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCcc-CCCCcE-EEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4799999999999 9999999877 644332 222333 7999999999999999999999998877777654
No 116
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.29 E-value=1.2e-11 Score=83.93 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=55.9
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.+.|.+ .+.|+|++.. +..... ..... ..|.|.+++.+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~-l~~~~~-~~~~~---~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKL-ISEKNR-TKKSG---HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEE-CCCCCE-EEcCC---CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4699999999999 9999999988 665432 22222 37999999999999999999999988776666665
No 117
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.28 E-value=1.2e-11 Score=83.53 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=53.8
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
+.|.|.+.|.|.|. +.|+++|.... ......+..+ ..|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~-i~W~k~g~~~~-~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPT-ITWNKDGVQVT-ESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCE-EEEEECCEECC-CCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999998 99999876432 2223333222 359999999999999999999999999887765
No 118
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.28 E-value=2.5e-11 Score=83.28 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=55.4
Q ss_pred EEEEeCCCCCcceEEEEeCCCcCCCCCCceeE----e-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823 32 VSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS----I-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH 103 (365)
Q Consensus 32 l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~----~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~ 103 (365)
|.|.+.|+|.| .++|+|++.. +........ . .......|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus 3 i~~~v~G~P~P-ti~W~kng~~-l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKP-TLQWFHEGAI-LNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCC-ceEEEECCEE-CCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 67899999999 9999999998 765443211 1 112345899999999999999999999999888777664
No 119
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.28 E-value=3.1e-11 Score=86.22 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCC-------CCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAP-------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP 99 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~ 99 (365)
|+.+.|.|.+.+.|.+ .+.|++++...+. .........++ .|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence 7899999999899999 9999998865111 11111111233 79999999999999999999999998888
Q ss_pred EEEEEE
Q psy3823 100 CTFHVV 105 (365)
Q Consensus 100 ~~l~V~ 105 (365)
+.|.|.
T Consensus 77 ~~l~V~ 82 (90)
T cd05726 77 AYLEVT 82 (90)
T ss_pred EEEEEe
Confidence 999984
No 120
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.27 E-value=3.3e-11 Score=83.20 Aligned_cols=73 Identities=30% Similarity=0.533 Sum_probs=56.4
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE-EeeceEEEeeecCCCCeEEEEEEEcCCCCCC-cccEEEEEe
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNIN 211 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~~~l~v~ 211 (365)
|+|.|.+.|.|.|. +.|+++|.++......... .....|.|.++..+|+|.|.|.+.|..|... +..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPT-YQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCc-EEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 57999999999888 9999999988653322112 2246899999999999999999999999653 355666654
No 121
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.27 E-value=2.1e-11 Score=82.97 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=55.2
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+.|.|.+.|.|.|. +.|++++..... ..... ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~-v~W~k~~~~~~~--~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPE-ISWIKIGGELPA--DRTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCe-EEEEECCeECCC--CceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47899999999998 999998764322 11111 122346999999999999999999999999988888876
No 122
>KOG3515|consensus
Probab=99.27 E-value=1.7e-10 Score=109.03 Aligned_cols=273 Identities=17% Similarity=0.161 Sum_probs=177.4
Q ss_pred EeecccCCeEeeCCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeE----ecCCeEEEEEEccCCC
Q psy3823 5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYS----IQDGSTSVARYTPTSE 79 (365)
Q Consensus 5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~----~~~~~~~~l~i~~~~~ 79 (365)
++.+++.|.+..+......+..|+...+.|. ..++|.. .+.|+++... ......... ........+.......
T Consensus 293 ~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~-~i~w~~~~~~-~~~~~~~~~~t~~~~~v~~~~~~~q~~~~ 370 (741)
T KOG3515|consen 293 ITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPA-HIAWYKDTKM-PKGSQKASSKTSNMGGVAVISHYAQPSSQ 370 (741)
T ss_pred eeecccccccccccCcccccccccccccceeccCCCCcc-ceeeeccCcc-cccccCcccCCCcccceeeEEeeecccch
Confidence 5667888888888777777899999999999 7788888 9999997665 433222111 1222333566677788
Q ss_pred CCCeEEEEEEEeCCCCCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe
Q psy3823 80 LEYGTLLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH 157 (365)
Q Consensus 80 ~d~G~Y~C~a~~~~~~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~ 157 (365)
.|.|.|+|.+.+...... ..+.+.+ .++|.+-..-. ......+++.....-.+.++|....+.|.+
T Consensus 371 ~~~g~v~c~a~~~~~~~~sss~~~l~~---------l~~p~~L~~~~---~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~ 438 (741)
T KOG3515|consen 371 QDGGQVTCPADNLELAHSSSSSFLLPV---------LPSPAFLVRHK---TAVVAMEQDHQAAPLPVRGAPAERTFYWTF 438 (741)
T ss_pred hcCceEEccccccccccccccceeccc---------cCCchhhhhcc---cceeeccCccccccCcccCCCcccchhhee
Confidence 999999999988775444 4455555 44443222111 223344555555554444777776699999
Q ss_pred CCeEEeeCCCCceE--EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceee
Q psy3823 158 NGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235 (365)
Q Consensus 158 ~~~~l~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~ 235 (365)
++..+......... .....+.+.++.+.|.|.|.|.+.|..|... ..+.+.+. +.|.+........
T Consensus 439 ~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~-~~~~~~~~----------~sp~~~~~~~~~~- 506 (741)
T KOG3515|consen 439 RLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQ-AYLLLGVH----------TSPHNHHLQDQVE- 506 (741)
T ss_pred cceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCcee-eEEeeccc----------cCCcccccccccc-
Confidence 88777654432222 2233444777999999999999999998766 44555666 7777765554433
Q ss_pred eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCce-eEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823 236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARN 303 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~-~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n 303 (365)
...+.++.+.|..+..+... .+.|.+.+.......+.. ..........+.+.....--++.|.|.+.+
T Consensus 507 ~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~ 576 (741)
T KOG3515|consen 507 GATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG 576 (741)
T ss_pred cCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecC
Confidence 55667799999998776544 699998775432222111 111122233466666655567899999999
No 123
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.27 E-value=3.4e-11 Score=86.20 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=58.8
Q ss_pred CCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDLN 209 (365)
Q Consensus 135 g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l~ 209 (365)
|..+.|.|.+.|.|.|. ++|++++..+.... .+....++.|.|.++. ..|+|.|.|.|.|..|...++.+.|.
T Consensus 19 ~~~v~l~C~a~G~P~P~-i~W~k~~~~i~~~~-~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 19 EGKVSVNCRARANPFPI-YKWRKNNLDIDLTN-DRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CCeEEEeCcCccCCCCE-EEEEECCEEccCCC-CeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 45799999999999987 99999998885422 2344557899999885 58999999999999998776665553
No 124
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.27 E-value=1.5e-11 Score=83.68 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=55.7
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.+.|.| .+.|++++.. +........ .....|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~-~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGE-LPADRTKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeE-CCCCceeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999899999 9999999877 543322111 12237999999999999999999999998877777776
No 125
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.27 E-value=4.2e-11 Score=82.15 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=54.5
Q ss_pred EEEEEEeeeCCCceeEEEeCCCCCCCCCCc-eeEe---eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLT-SYSI---QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 243 ~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~-~~~~---~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
.|.|.+.|.|.|. +.|+++|......... ..+. .....+.|.|.++..+|+|.|+|.|.|..|+++.++.+.
T Consensus 2 ~i~~~v~G~P~Pt-i~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPT-LQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCc-eEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3679999999999 9999999755332211 1111 112345799999999999999999999999998877664
No 126
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.26 E-value=2.5e-11 Score=84.58 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=57.5
Q ss_pred CcEEEEEEeCC--CCCcceEEEEeCCCcCCCCC--CceeEecC--CeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEE
Q psy3823 28 EQVLVSCTVDA--NPQAQYFTWAFNNSGTAPRP--LTSYSIQD--GSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCT 101 (365)
Q Consensus 28 ~~~~l~C~~~~--~p~~~~v~W~~~~~~~l~~~--~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~ 101 (365)
+++.|.|.+.. .++. .+.|++|+.. +... ...+.... ...+.|.|.+++..|+|+|+|.|.+..+....+..
T Consensus 1 ~~~~l~C~v~~d~~l~~-~~~W~~dg~~-i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDI-VFTWSFNGHL-IDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCc-EEEEEECCEE-CcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 57899999655 4466 9999999998 7521 11122211 12348999999999999999999999999999999
Q ss_pred EEE
Q psy3823 102 FHV 104 (365)
Q Consensus 102 l~V 104 (365)
|.|
T Consensus 79 L~V 81 (85)
T cd05853 79 LIV 81 (85)
T ss_pred EEE
Confidence 998
No 127
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.26 E-value=8.1e-11 Score=84.55 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=53.5
Q ss_pred cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeCCCEEEEEEcCCC-cccCeEEEEEEEcCCccce-ecEEE
Q psy3823 238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQDGSTSVARYTPTS-ELEYGTLLCWARNEQGSQR-TPCTF 314 (365)
Q Consensus 238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~-~~d~G~Y~C~a~n~~g~~~-~~~~l 314 (365)
.|+.+.|.|.+.|.|.|. +.|+++|....... ..++ ..++ .|.|.++. .+|+|.|.|.|.|..|... ..+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P~-i~W~k~g~~l~~~~-~~~~~~~~g---~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVPT-YRWLRNGTEIDTES-DYRYSLIDG---NLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCCE-EEEEECCeECccCC-CceEEeeCC---eEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 478999999999999998 99999987543222 2222 2233 47888874 6999999999999999873 34443
No 128
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.26 E-value=4e-11 Score=85.55 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCC----CcCCC-CCCce-eEe-------cCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNN----SGTAP-RPLTS-YSI-------QDGSTSVARYTPTSELEYGTLLCWARNEQ 93 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~----~~~l~-~~~~~-~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~ 93 (365)
|+.++|.|.+.+.|.| .++|+|++ .. +. ..... ... ..+....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSK-YGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCce-eCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 7899999999999999 99999964 22 21 11110 000 11233489999999999999999999999
Q ss_pred CCCcccEEEEE
Q psy3823 94 GNQRTPCTFHV 104 (365)
Q Consensus 94 ~~~~~~~~l~V 104 (365)
|....++.|+|
T Consensus 79 G~~~~sa~L~V 89 (90)
T cd04974 79 GPSHHSAWLTV 89 (90)
T ss_pred CcccCCEEEEe
Confidence 99989999887
No 129
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.26 E-value=2.1e-11 Score=82.01 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=54.1
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.++|.| .++|+|++.. +..... ...+ ..|.|.++..+|+|.|+|.|.|..|..+...++++
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~-l~~~~~--~~~~---~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQL-IVLNHT--FKRG---VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEE-CCCCCE--EccC---CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4689999999999 9999999998 654322 1122 37999999999999999999999997775555544
No 130
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.26 E-value=7.8e-11 Score=84.33 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=56.9
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-ceecEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGS-QRTPCT 313 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~ 313 (365)
+..|+.+.|.|.+.|.|+ . +.|++.+............ ......+.|.|.+++.+|+|.|+|.|.|..|. ...++.
T Consensus 12 v~~G~~~~l~C~~~G~p~-~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~ 89 (92)
T cd04977 12 ISVGESKFFLCQVIGEPK-D-ISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVN 89 (92)
T ss_pred ECCCCeEEEEEEeEeeCC-e-EEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEE
Confidence 889999999999999864 6 9999743322222222222 33345678999999999999999999999754 556655
Q ss_pred EE
Q psy3823 314 FH 315 (365)
Q Consensus 314 l~ 315 (365)
|.
T Consensus 90 l~ 91 (92)
T cd04977 90 LK 91 (92)
T ss_pred EE
Confidence 54
No 131
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.26 E-value=3e-11 Score=83.92 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=55.2
Q ss_pred EEEEeCCCCCcceEEEEeCCCcCCCCCCcee--Ee-----cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823 32 VSCTVDANPQAQYFTWAFNNSGTAPRPLTSY--SI-----QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH 103 (365)
Q Consensus 32 l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~--~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~ 103 (365)
|.|.+.++|.| .++|+|++.. +....... .. .....+.|.|.+++.+|+|.|+|.|.|..|..+..+.++
T Consensus 3 i~~~v~G~P~P-~v~W~k~g~~-i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKP-TLTWYHNGAV-LNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCC-cEEEEECCEE-CcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 68999999999 9999999988 65443221 11 123355799999999999999999999999988777665
No 132
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.26 E-value=3e-11 Score=81.57 Aligned_cols=69 Identities=17% Similarity=0.317 Sum_probs=54.5
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+.|.|.+.|.|+|. +.|++++.... ......... ..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~-v~W~k~~~~~~--~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPT-VLWRKEDGELP--KGRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCE-EEEEECCccCC--CCcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47899999999998 99999865332 222333222 25999999999999999999999999988877764
No 133
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.26 E-value=3.4e-11 Score=82.46 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=55.0
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCC--CceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC-cccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRP--LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ-RTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~-~~~~~l~V 104 (365)
++|.|.+.++|.| .++|+|++.. +... .......++ .|.|.+++.+|+|.|+|.|.|..|.. .....|.|
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~-~~~~~~~~~~~~~~g---~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLP-VDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEE-CccCCCCCEEEcCCc---EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999 9999999887 6532 222222333 69999999999999999999999875 36677765
No 134
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.26 E-value=5.8e-11 Score=82.49 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=54.9
Q ss_pred EEEEEEeeeCCCceeEEEeCCCCCCCCCCce-eEe-----eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSI-----QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 243 ~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~-~~~-----~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
.|.|.+.|.|.|. +.|+++|.......... ... .....+.|.|.+++.+|+|.|+|.|.|..|..+.++.+.
T Consensus 2 ~i~~~v~G~P~P~-v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPT-LTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCc-EEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 3689999999999 99999987554322111 111 123356799999999999999999999999998877664
No 135
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.26 E-value=4.6e-11 Score=85.25 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCC----CcCCCCCCc--eeEe-------cCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNN----SGTAPRPLT--SYSI-------QDGSTSVARYTPTSELEYGTLLCWARNEQ 93 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~----~~~l~~~~~--~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~ 93 (365)
|+.+.|.|.+.+.|.| .+.|++++ .. +..... .... .....++|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSK-YGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcE-eCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 7899999999999999 99999853 32 221111 0111 11123589999999999999999999999
Q ss_pred CCCcccEEEEE
Q psy3823 94 GNQRTPCTFHV 104 (365)
Q Consensus 94 ~~~~~~~~l~V 104 (365)
|....+..|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99888888887
No 136
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.25 E-value=5.6e-11 Score=84.82 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=57.6
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCC----CCCCCC-CCceeEe-------eCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNN----SDTAPR-PLTSYSI-------QDGSTSVARYTPTSELEYGTLLCWARNEQG 306 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~----~~~~~~-~~~~~~~-------~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g 306 (365)
|+.+.|.|.+.|.|.|. +.|++++ ...... ....... .+...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~-i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPH-IQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCE-EEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 67899999999999998 9999853 211111 1111111 112236799999999999999999999999
Q ss_pred cceecEEEEE
Q psy3823 307 SQRTPCTFHV 316 (365)
Q Consensus 307 ~~~~~~~l~v 316 (365)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9999888877
No 137
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.25 E-value=8.8e-11 Score=85.28 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=63.2
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC--ceeEe----cCCeEEEEEEccCCC-CCCeEEEEEEEe
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL--TSYSI----QDGSTSVARYTPTSE-LEYGTLLCWARN 91 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~--~~~~~----~~~~~~~l~i~~~~~-~d~G~Y~C~a~~ 91 (365)
.....+.+|+.+.|.|.+.+.|.+..+.|++++.. +.... ..... ..+..+.|.|.++.. +|.|.|+|.|.|
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~-i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N 86 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENE-LESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWN 86 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEE-ccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEc
Confidence 34556799999999999989999835999999987 65432 22211 123456899999998 558999999999
Q ss_pred CCCCCcccEEE
Q psy3823 92 EQGNQRTPCTF 102 (365)
Q Consensus 92 ~~~~~~~~~~l 102 (365)
..|.....+.|
T Consensus 87 ~~G~~~~~~~L 97 (98)
T cd05758 87 SFGSGTAIISL 97 (98)
T ss_pred CCCcccEEEEe
Confidence 99988776665
No 138
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.25 E-value=3.1e-11 Score=85.24 Aligned_cols=75 Identities=23% Similarity=0.478 Sum_probs=58.9
Q ss_pred CcEEEEEEEEecCCCC-eeEEEeCCeEEeeCCCCc------eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 136 VDIYFDCHIQANPPYK-KLIWTHNGITISNNASAG------RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 136 ~~v~l~C~~~~~p~~~-~i~W~~~~~~l~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
+++.|.|.+.+.|.+. .+.|+++|..+....... .....+.|.|.+++..|+|.|+|.|.|..|... ..+.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS-ASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE-EEEEE
Confidence 4689999999988764 378999999886432211 112357899999999999999999999998765 67888
Q ss_pred EEe
Q psy3823 209 NIN 211 (365)
Q Consensus 209 ~v~ 211 (365)
.|.
T Consensus 80 ~V~ 82 (85)
T cd04970 80 IVR 82 (85)
T ss_pred EEE
Confidence 887
No 139
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.25 E-value=3.4e-11 Score=81.01 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=53.0
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTF 102 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l 102 (365)
|+.++|.|.+.+.|.| .|+|+|++.. +..... ..... ..|.|.+++ |.|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~-l~~~~~-~~~~~---~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEE-LTKEDE-MPVGR---NVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEE-CCCccc-eecCc---cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 7899999999999999 9999999987 654332 11122 268888874 7999999999999977665554
No 140
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.25 E-value=2.5e-11 Score=84.11 Aligned_cols=73 Identities=14% Similarity=0.311 Sum_probs=57.1
Q ss_pred cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
..+.+|+++.|.|.+.|.|.|..|.|++||.++... .....+.|.|..+ .|+|.|.|.|.|..|...++.+.|
T Consensus 8 ~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 8 LSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred eEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 467899999999999999999349999999988531 1123457888776 478999999999999776555544
No 141
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.24 E-value=4.5e-11 Score=83.29 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=59.7
Q ss_pred ceEEEEEEEeeeC--CCceeEEEeCCCCCCCCCCceeEee-C--CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 240 EQVLVSCTVDANP--QAQYFTWAFNNSDTAPRPLTSYSIQ-D--GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 240 ~~~~l~C~~~~~p--~~~~~~W~~~~~~~~~~~~~~~~~~-~--~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
+.+.|.|.+.+.| ++. +.|+++|..........++.. . ...+.|.|.+++.+|+|.|+|.|.|..+..+.+..|
T Consensus 1 ~~~~l~C~v~~d~~l~~~-~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIV-FTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcE-EEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 4689999997744 665 999999976542211112211 1 122359999999999999999999999999999999
Q ss_pred EEEcCc
Q psy3823 315 HVVKAG 320 (365)
Q Consensus 315 ~v~~~~ 320 (365)
.|..++
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 998653
No 142
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.24 E-value=5.2e-11 Score=85.99 Aligned_cols=80 Identities=25% Similarity=0.500 Sum_probs=62.3
Q ss_pred cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCC-ceEEeeceEEEeee-----cCCCCeEEEEEEEcC-CCCCC
Q psy3823 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSV-----TRHSGGLYACSAINS-QGEGG 202 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~-~~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~~-~~~~~ 202 (365)
..+.+|+++.|.|.+.|.|.+. +.|++||..+...... .....++++.|.++ .+.|.|.|+|.+.|. .|...
T Consensus 9 ~~~~~g~~v~l~C~v~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 9 IVAVRGGPVVLNCSAEGEPPPK-IEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred eEEcCCCCEEEeeecccCCCCE-EEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 3567899999999999998777 9999999988653321 23334567777776 578999999999999 99876
Q ss_pred cccEEEEE
Q psy3823 203 STPFDLNI 210 (365)
Q Consensus 203 s~~~~l~v 210 (365)
++.+.|.|
T Consensus 88 s~~~~l~v 95 (95)
T cd05722 88 SRTARLTV 95 (95)
T ss_pred EeeeEEeC
Confidence 67666653
No 143
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.24 E-value=4.1e-11 Score=82.66 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=57.8
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
+.|.|.+.+.|.+ .+.|+|++.. +................|.|.+++.+|.|.|+|.+.|..|..+..+.|.|
T Consensus 1 ~~L~C~v~g~P~p-~v~W~k~~~~-l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLP-RLTWLKNGMD-ITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCC-EEEEEECCEE-CCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 4689998899999 9999999988 65433222111122237999999999999999999999999998888887
No 144
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.24 E-value=7e-11 Score=84.25 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=57.3
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCC----CCCCC-CCceeEe-------eCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNS----DTAPR-PLTSYSI-------QDGSTSVARYTPTSELEYGTLLCWARNEQG 306 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~----~~~~~-~~~~~~~-------~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g 306 (365)
|+.+.|.|.+.|.|.|. +.|++++. ..... ....... ..+....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~-i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCe-EEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 67899999999999998 99999642 11111 1111111 112234699999999999999999999999
Q ss_pred cceecEEEEE
Q psy3823 307 SQRTPCTFHV 316 (365)
Q Consensus 307 ~~~~~~~l~v 316 (365)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9999999887
No 145
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.24 E-value=6e-11 Score=81.81 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=58.4
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK 318 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 318 (365)
+.|.|.+.|.|+|. +.|++++....... ..++...+..+.|.|.++..+|.|.|+|.|.|..|..+..+.|.|..
T Consensus 1 ~~L~C~v~g~P~p~-v~W~k~~~~l~~~~-~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPR-LTWLKNGMDITPKL-SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCE-EEEEECCEECCCCC-CccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 36899999999998 99999887543322 22222223334699999999999999999999999999999998863
No 146
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.23 E-value=9.2e-11 Score=83.96 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=53.9
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCC-CCCCeEEEEEEEeCCCCCc-ccEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS-ELEYGTLLCWARNEQGNQR-TPCTF 102 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~~~~~~~~-~~~~l 102 (365)
|+.+.|.|.+.++|.+ .++|++++.. +..........++ .|.|.++. .+|+|.|+|.|.|..|... ..+.|
T Consensus 19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~-i~~~~~~~~~~~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFP-IYKWRKNNLD-IDLTNDRYSMVGG---NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCC-EEEEEECCEE-ccCCCCeEEEECC---EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 4589999999999999 9999999987 6432222222334 78998875 6899999999999998764 34444
No 147
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.23 E-value=7.4e-11 Score=85.18 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=59.6
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc--eeEecCCeEEEEEEccC-----CCCCCeEEEEEEE
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT--SYSIQDGSTSVARYTPT-----SELEYGTLLCWAR 90 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~ 90 (365)
++....+.+|+++.|.|.+.+.|.+ .+.|+|++.. +..... .....++ .|.|.++ +..|.|.|+|.|.
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~-l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVL-LNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCC-EEEEEECCeE-CccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEE
Confidence 3445667899999999999999999 9999999987 654332 1222334 3455544 5889999999999
Q ss_pred eC-CCCCc-ccEEEEE
Q psy3823 91 NE-QGNQR-TPCTFHV 104 (365)
Q Consensus 91 ~~-~~~~~-~~~~l~V 104 (365)
|. .|... ..+.|+|
T Consensus 80 N~~~G~~~s~~~~l~v 95 (95)
T cd05722 80 NDSLGSIVSRTARLTV 95 (95)
T ss_pred CCccCcEEEeeeEEeC
Confidence 99 87653 5555543
No 148
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.23 E-value=4.6e-11 Score=83.56 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=56.5
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCC---CCCCce--eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTA---PRPLTS--YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~---~~~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 313 (365)
|+.+.|.|.+.|.|.|. +.|++++.... ...... .+.. .....|.|.+++.+|+|.|.|.|.|..|..+..+.
T Consensus 1 G~~v~l~C~~~g~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPPE-ITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeeccccCCCc-EEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 68899999999999998 99999743111 000000 0111 12246999999999999999999999999998888
Q ss_pred EEE
Q psy3823 314 FHV 316 (365)
Q Consensus 314 l~v 316 (365)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 865
No 149
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.22 E-value=6.3e-11 Score=81.62 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=55.6
Q ss_pred CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
..+....+.+|++++|.|.+.+.|.+..+.|+||+.. +.. .. ..|.|.++ .+|+|.|+|.|.+. ..
T Consensus 5 ~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~-l~~-------~~---~~l~i~~~-~~dsG~Y~C~a~~~--~~ 70 (78)
T cd05752 5 LDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKL-LET-------TT---NSYRIRAA-NNDSGEYRCQTQGS--SL 70 (78)
T ss_pred eCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEE-eec-------cC---CeEEEeec-ccCCEEeEEECCCC--cC
Confidence 3455677889999999999878776437999999987 521 12 37889999 99999999999864 33
Q ss_pred cccEEEEE
Q psy3823 97 RTPCTFHV 104 (365)
Q Consensus 97 ~~~~~l~V 104 (365)
...++|+|
T Consensus 71 S~~v~l~V 78 (78)
T cd05752 71 SDPVHLEV 78 (78)
T ss_pred CCCEEEeC
Confidence 35555543
No 150
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.22 E-value=1.2e-10 Score=83.35 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=58.5
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-------c-eeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-------T-SYSIQDGSTSVARYTPTSELEYGTLLCWAR 90 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-------~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 90 (365)
.....+.+|+++.|.|.+.+.|.+ .+.|++++...+..+. + ...........|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 356778999999999998889999 9999998764111111 1 111222345689999999999999999998
Q ss_pred eCCCCCcccEEEE
Q psy3823 91 NEQGNQRTPCTFH 103 (365)
Q Consensus 91 ~~~~~~~~~~~l~ 103 (365)
.. .......+|+
T Consensus 83 t~-~~~~~~~~~~ 94 (95)
T cd05882 83 TM-PVRTAKATVT 94 (95)
T ss_pred ee-ccccEEEEEE
Confidence 72 2333445444
No 151
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.22 E-value=5.1e-11 Score=80.30 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=51.9
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH 103 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~ 103 (365)
+.|.|.+.|.|.| .+.|+|++.. +............ +|.|.+++.+|+|.|+|.|.+..........++
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~-l~~~~~~~~~~~~---~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGLP-AAEKCSRYHVDGY---SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCEE-CCCCCcEEEeCCC---EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 4689999999999 9999999988 6544322222222 799999999999999999999755544444333
No 152
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.22 E-value=1.4e-10 Score=83.42 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=55.0
Q ss_pred CceEEEEecC---CcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCC-CCCCeEEEEEEEeC
Q psy3823 18 QQRIYGALRN---EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTS-ELEYGTLLCWARNE 92 (365)
Q Consensus 18 ~~~~~~v~~G---~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~~~ 92 (365)
++....+.+| +.++|.|.+.++|.+ .++|++++.. +...... ....++ .|.|.++. ..|+|.|+|.|.|.
T Consensus 7 ~P~~~~~~~~~~g~~v~l~C~a~g~P~p-~i~W~~~g~~-l~~~~~~~~~~~~g---~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 7 QPSSLLFPEGSPEEKVTLGCRARASPPA-TYRWKMNGTE-IKFAPESRYTLVAG---NLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred CCCCEEecCCCCCCeEEEEeEceeCCCC-EEEEEECCEE-CccCCCceEEEECC---eEEEccCCccCcCEEEEEEEEcC
Confidence 3444444444 689999999999999 9999999988 6533221 222333 68887754 58999999999999
Q ss_pred CCCCc
Q psy3823 93 QGNQR 97 (365)
Q Consensus 93 ~~~~~ 97 (365)
.|...
T Consensus 82 ~G~~~ 86 (94)
T cd05850 82 CGTVV 86 (94)
T ss_pred cCcEE
Confidence 98764
No 153
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.21 E-value=7e-11 Score=81.29 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=53.8
Q ss_pred EEEEEEeCC-CCCcceEEEEeCCCcCCCCCCcee---EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823 30 VLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSY---SIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC 100 (365)
Q Consensus 30 ~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~ 100 (365)
+.|.|.+.+ .|.+ .+.|+|++.. +....... .........|.|.+++.+|.|.|+|.|.|..|....++
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~-l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKE-LNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCee-ccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 479999878 8999 9999999987 65443321 22334456899999999999999999999998866444
No 154
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.21 E-value=5.8e-11 Score=82.31 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=55.7
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
++....+.+|+.+.|.|.+.|+|.|..++|++++.. +... .....+.|.|..+. |.|.|.|.|.|..|...
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~-l~~~------~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSP-LGDP------PAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEE-CCCC------CCCCCCEEEEcccc--CCeEEEEEEEeccCcEE
Confidence 455678899999999999999998834999999988 6531 11222378888774 78999999999998654
No 155
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.21 E-value=8.7e-11 Score=80.82 Aligned_cols=71 Identities=13% Similarity=0.274 Sum_probs=54.3
Q ss_pred EEEEEEEee-eCCCceeEEEeCCCCCCCCCCce--eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823 242 VLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTS--YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313 (365)
Q Consensus 242 ~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 313 (365)
+.|.|.+.| .|.|. +.|+++|.......... .+......+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~-~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLR-FKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCce-EEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 89998 99999887543322211 1333445678999999999999999999999999876554
No 156
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.20 E-value=1.7e-10 Score=80.09 Aligned_cols=74 Identities=14% Similarity=0.251 Sum_probs=57.5
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+.+|+.+.|.|.+.+. .+. +.|+++|..... ..+..+ .+ ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 6 ~~~G~~v~l~C~~~~~-~~~-v~W~k~g~~l~~-~~~~~~--~~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 6 AHPGDLLQLRCRLRDD-VQS-INWTKDGVQLGE-NNRTRI--TG--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred ecCCCCEEEEEEecCC-Cce-EEEeeCCcCCCC-CceEEE--eC--CEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 7899999999999886 566 999999875432 223332 22 2599999999999999999999999987766654
Q ss_pred E
Q psy3823 316 V 316 (365)
Q Consensus 316 v 316 (365)
|
T Consensus 79 V 79 (79)
T cd04973 79 V 79 (79)
T ss_pred C
Confidence 3
No 157
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.20 E-value=6.1e-11 Score=82.95 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=56.1
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCc---CCCCCCcee-EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSG---TAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTF 102 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~---~l~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l 102 (365)
|+.+.|.|.+.+.|.+ .++|++++.. .+....... .........|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 7899999999899999 9999997432 011111100 0000112479999999999999999999999988888877
Q ss_pred EE
Q psy3823 103 HV 104 (365)
Q Consensus 103 ~V 104 (365)
+|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 64
No 158
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.20 E-value=7.5e-11 Score=81.40 Aligned_cols=70 Identities=29% Similarity=0.518 Sum_probs=53.9
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE--eeceEEEeeecC----CCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRII--TNQTLVLQSVTR----HSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~--~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
+.|.|.+.|.|.|. ++|++|+..+......+... .++.|.|.++.. +|+|.|+|.|.|..|...++.+.|
T Consensus 1 i~l~C~~~G~P~P~-v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPT-FSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCe-EEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 47999999999988 99999999885433223322 367899988754 789999999999999876655544
No 159
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.19 E-value=1.1e-10 Score=78.52 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=52.1
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
|+.+.|.|.+.|.|.|. +.|++++..... ..... .+ ...|.|.++ .|+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~a~G~P~P~-v~W~k~g~~l~~-~~~~~---~~-~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPY-VKWMKGGEELTK-EDEMP---VG-RNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCE-EEEEECCEECCC-cccee---cC-ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999998 999998864322 11111 11 235888887 47999999999999998877665
No 160
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.19 E-value=2e-10 Score=80.60 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=57.0
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce--e--EecCCeEEEEEEccCCCCCCeEEEEEEEeCCC--CCcccE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--Y--SIQDGSTSVARYTPTSELEYGTLLCWARNEQG--NQRTPC 100 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~--~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~--~~~~~~ 100 (365)
|++++|.|.+.+.|.+ .+.|+++++. ....... . .......+.|.|.+++.+|+|.|+|.|.+... ....++
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKD-IGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCcc-CCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 7999999998788888 9999998765 3322211 1 11223456899999999999999999998766 344777
Q ss_pred EEEE
Q psy3823 101 TFHV 104 (365)
Q Consensus 101 ~l~V 104 (365)
.|+|
T Consensus 79 ~i~V 82 (84)
T cd05861 79 NITV 82 (84)
T ss_pred EEEE
Confidence 7777
No 161
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.19 E-value=2.1e-10 Score=80.52 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=57.8
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc---eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc--cceecEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG--SQRTPCT 313 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~~ 313 (365)
|+.+.|.|.+.+.|.+. +.|++++......... .........+.|.|.+++.+|+|.|.|.|.|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVD-FSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccE-EEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 78999999999998887 9999877533221111 1112223357899999999999999999999877 5667777
Q ss_pred EEEE
Q psy3823 314 FHVV 317 (365)
Q Consensus 314 l~v~ 317 (365)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7663
No 162
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.18 E-value=1.4e-10 Score=81.66 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=58.0
Q ss_pred CceEEEEEEEeee--CCCceeEEEeCCCCCCCCCCce--e--EeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823 239 NEQVLVSCTVDAN--PQAQYFTWAFNNSDTAPRPLTS--Y--SIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC 312 (365)
Q Consensus 239 g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~~~~~~--~--~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 312 (365)
|+.+.|.|.+.+. |++. +.|.+++.......... . .......+.|.|.+++.+|+|.|+|.|.|..|..+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVD-FQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEE-EEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 7889999999998 7777 99998775332211110 0 11123456899999999999999999999999988887
Q ss_pred EEEE
Q psy3823 313 TFHV 316 (365)
Q Consensus 313 ~l~v 316 (365)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 7765
No 163
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.18 E-value=2.4e-10 Score=80.73 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=63.6
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP 99 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~ 99 (365)
.+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +...... ..........|.|.++..+|.|.|+|.+.+..|..+.+
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~ 80 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRP-TITWLKDGKP-FKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT 80 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCC-eEEEEECCEE-CcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence 4567789999999998888999 9999999887 5533221 12223344579999999999999999999998887677
Q ss_pred EEEEE
Q psy3823 100 CTFHV 104 (365)
Q Consensus 100 ~~l~V 104 (365)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05729 81 YKVDV 85 (85)
T ss_pred EEEeC
Confidence 76653
No 164
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.18 E-value=1.3e-10 Score=81.83 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=58.6
Q ss_pred CCcEEEEEEeCCC--CCcceEEEEeCCCcCCCCCCce-----eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823 27 NEQVLVSCTVDAN--PQAQYFTWAFNNSGTAPRPLTS-----YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP 99 (365)
Q Consensus 27 G~~~~l~C~~~~~--p~~~~v~W~~~~~~~l~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~ 99 (365)
|+.+.|.|.+.+. |.+ .++|++++.. +...... ........+.|.|.+++.+|+|.|+|.|.|..+....+
T Consensus 1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGV-DFQWTYPGKK-RGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccE-EEEEecCCcc-cCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 7899999998888 777 9999998876 4322111 11122345689999999999999999999999888877
Q ss_pred EEEEE
Q psy3823 100 CTFHV 104 (365)
Q Consensus 100 ~~l~V 104 (365)
..|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 77765
No 165
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.17 E-value=1.3e-10 Score=83.31 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=60.5
Q ss_pred eecCceEEEEEEEee-----eCCCceeEEEeCCCCCCCCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823 236 ALRNEQVLVSCTVDA-----NPQAQYFTWAFNNSDTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~-----~p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 309 (365)
+.+|+.+.|.|.+.+ .|.+. +.|++++....... ...++...+ ..|.|.++..+|+|.|.|.+.|..|..+
T Consensus 11 v~~G~~~~L~C~~~g~~~~~~p~~~-v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 11 VLEGEPVVIKCPLFYSYIAQSPGLN-LTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EecCCCeEEECCCCCcccccCCCce-EEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 778999999999998 67887 99999986433221 112222222 3599999999999999999999999998
Q ss_pred ecEEEEE
Q psy3823 310 TPCTFHV 316 (365)
Q Consensus 310 ~~~~l~v 316 (365)
..+.|.|
T Consensus 88 ~~~~L~v 94 (94)
T cd05756 88 VSISLTV 94 (94)
T ss_pred EEEEEEC
Confidence 8887764
No 166
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.17 E-value=3.9e-10 Score=80.32 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=60.4
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC---ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL---TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
+..+.+.+|+.+.|.|...+ |.+ .+.|++++.. +.... ........ .|.|.+++.+|+|.|+|.|.+..+.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~-~~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~~~~~~ 76 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGP-LQRKEEPEERLLVTED---GLLIRSVSPADAGVYTCQSVEHGFK 76 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCc-eEEEEECCcc-cccccCcCceEEEcCC---CEEEccCCHHHCEEEEEEEecCccc
Confidence 45677899999999999866 888 9999999987 54432 11111222 4889999999999999999876654
Q ss_pred Cc-ccEEEEE
Q psy3823 96 QR-TPCTFHV 104 (365)
Q Consensus 96 ~~-~~~~l~V 104 (365)
.. .+++|.|
T Consensus 77 ~~~~~~~l~V 86 (89)
T cd04979 77 QTLATYSLNV 86 (89)
T ss_pred eeEeEEEEEE
Confidence 43 7777777
No 167
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.17 E-value=7e-10 Score=79.40 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC--ceeE----ecCCeEEEEEEccCCCCC-CeEEEEEE
Q psy3823 17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL--TSYS----IQDGSTSVARYTPTSELE-YGTLLCWA 89 (365)
Q Consensus 17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~--~~~~----~~~~~~~~l~i~~~~~~d-~G~Y~C~a 89 (365)
...+...+.+|+.+.|.|.+.+.|.|..+.|..++.. +.... .... ...+..+.|.|.++...| .|.|.|.|
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~-i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a 84 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENV-LESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA 84 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEcccc-ccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence 3455666789999999999888999878899988876 65432 2221 244678899999998766 79999999
Q ss_pred EeCCCCCcccEEE
Q psy3823 90 RNEQGNQRTPCTF 102 (365)
Q Consensus 90 ~~~~~~~~~~~~l 102 (365)
.|..|.+...++|
T Consensus 85 ~N~~G~d~~~i~L 97 (98)
T cd05898 85 WNSFGSGTAIIQL 97 (98)
T ss_pred EeCCccceEEEEe
Confidence 9999998877765
No 168
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.16 E-value=4.3e-10 Score=80.83 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=58.6
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCC--------cCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS--------GTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 89 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~--------~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 89 (365)
+.....+.+|++++|.|...+.|.+ .+.|++.+. ..+..+............+|.|.+++.+|+|.|+|.+
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence 3456789999999999998888999 999986432 1011222111122234568999999999999999999
Q ss_pred EeCCCCCcccEEEEE
Q psy3823 90 RNEQGNQRTPCTFHV 104 (365)
Q Consensus 90 ~~~~~~~~~~~~l~V 104 (365)
.+... ......|+|
T Consensus 82 ~t~~~-~~~~~~l~v 95 (95)
T cd07701 82 FTMPV-KTSKAYLTV 95 (95)
T ss_pred EeecC-ccEEEEEEC
Confidence 87432 345555543
No 169
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.16 E-value=2.8e-10 Score=79.64 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=54.3
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 93 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~ 93 (365)
+....+.+|+++.|.|.+.+ |.+ .+.|++++.. +..........++ .|.|.+++.+|+|.|+|.+....
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~-i~~~~~r~~~~~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLA-RVVWKFDGKV-LTPESAKYLLYRD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCC-eEEEEECCEE-CCCCCceEEEECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 55677899999999999754 667 9999999998 6554222223334 69999999999999999998653
No 170
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.16 E-value=1.4e-10 Score=80.05 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=47.7
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCC----CCCeEEEEEEEeCCCCCc
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSE----LEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~~~~~~~~ 97 (365)
++|.|.+.++|.| .|+|+|++.. +................|.|.++.. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~-l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTH-FDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeE-CCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 4799999999999 9999999987 6433221111111123788887753 689999999999998754
No 171
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.15 E-value=1.6e-10 Score=79.67 Aligned_cols=70 Identities=26% Similarity=0.516 Sum_probs=52.6
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE--eeceEEEeeecC----CCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRII--TNQTLVLQSVTR----HSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~--~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
+.|.|.+.|.|.|. ++|++++.++.......... .+++|.|..+.. .|.|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~a~G~P~P~-i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPS-FSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCe-EEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 47999999999988 99999999875333322222 367888877764 378999999999999776555443
No 172
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.15 E-value=2.9e-10 Score=78.98 Aligned_cols=70 Identities=16% Similarity=0.324 Sum_probs=50.3
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCC-------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eecEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAP-------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTPCT 313 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~ 313 (365)
++|.|.+.|.|.|. +.|++++..... ...+.....+ ..|.|.+++.+|+|.|.|.|.|..|.. +..+.
T Consensus 1 v~l~C~~~G~P~P~-v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPT-IVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCE-EEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence 47999999999998 999997542211 1111222222 359999999999999999999999986 45555
Q ss_pred EE
Q psy3823 314 FH 315 (365)
Q Consensus 314 l~ 315 (365)
|+
T Consensus 77 l~ 78 (79)
T cd05734 77 LT 78 (79)
T ss_pred Ee
Confidence 44
No 173
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.14 E-value=1.9e-10 Score=79.92 Aligned_cols=72 Identities=21% Similarity=0.508 Sum_probs=54.2
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeC------CCCce-EEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNN------ASAGR-IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~------~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v 210 (365)
|+|.|.+.|+|.|. +.|++++...... ...+. ...+++|.|.++..+|+|.|.|.|.|..|...++.+.|+|
T Consensus 1 v~l~C~~~G~P~P~-v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPT-IVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCE-EEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 57999999999998 9999964322110 11122 2346789999999999999999999999987767776654
No 174
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.14 E-value=2.2e-10 Score=78.91 Aligned_cols=70 Identities=27% Similarity=0.374 Sum_probs=52.5
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE--EeeceEEEeeec----CCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVT----RHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~--~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
+.|.|.+.|+|.|. ++|++++..+......+.. ..+++|.|..+. .+|+|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPT-FQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCE-EEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 47899999999998 9999999877432222222 246789998764 3579999999999999776555443
No 175
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.14 E-value=2.5e-10 Score=76.97 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=52.7
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
+.|.|.+.|.|+|. +.|+++|.+...... .+..++. .|.|.+++.+|+|.|+|.|.|..........+.+
T Consensus 1 ~~l~c~v~g~P~P~-v~W~kdg~~l~~~~~--~~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPE-VIWLKDGLPAAEKCS--RYHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCe-EEEEECCEECCCCCc--EEEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 36899999999998 999999865433222 2223332 5999999999999999999998776665555543
No 176
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.14 E-value=3.4e-10 Score=79.18 Aligned_cols=74 Identities=26% Similarity=0.418 Sum_probs=58.9
Q ss_pred ceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v 210 (365)
.+.+|++++|.|.+.+..+..++.|+++|..+... ..+..|.|.+++..|+|.|+|.+.+..+...|+.+.|+|
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 57899999999998654444459999999876421 124689999999999999999999999877777776654
No 177
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.13 E-value=2.3e-10 Score=81.21 Aligned_cols=74 Identities=12% Similarity=0.246 Sum_probs=56.9
Q ss_pred ceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCC-CCCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 19 QRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTA-PRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l-~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
.....+.+|+.+.|.|. ..+.|.+ .|.|++++.... ........ ..+| .|.|.+++.+|.|.|+|.|.+....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p-~~~W~k~~~~~~~~~d~r~~~~~~~G---~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDL-SYRWLLNEFPNFIPEDGRRFVSQTNG---NLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCC-EEEEEECCcccccccCCCeEEeCCCC---cEEEeecCHhhCceeEEEEEecccC
Confidence 45577899999999998 8889999 999999987511 22222122 2345 8999999999999999999987654
Q ss_pred C
Q psy3823 96 Q 96 (365)
Q Consensus 96 ~ 96 (365)
.
T Consensus 86 ~ 86 (96)
T cd05727 86 K 86 (96)
T ss_pred C
Confidence 4
No 178
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.12 E-value=2.5e-10 Score=78.60 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=46.1
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCc--eeEe-cCCeEEEEEEccCCC----CCCeEEEEEEEeCCCCCc
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLT--SYSI-QDGSTSVARYTPTSE----LEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~--~~~~-~~~~~~~l~i~~~~~----~d~G~Y~C~a~~~~~~~~ 97 (365)
+.|.|.+.|+|.| .++|+|++.. +..... .... .++ +|.|..+.. .|.|.|+|.|.|..|...
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~-l~~~~~~~~~~~~~~g---~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTH-FDIDKDPKVTMKPNTG---TLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeE-CCCcCCCCEEEeCCCc---eEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 4799999999999 9999999987 532222 1222 233 677776653 378999999999988654
No 179
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.12 E-value=4.8e-10 Score=80.18 Aligned_cols=70 Identities=23% Similarity=0.458 Sum_probs=55.8
Q ss_pred cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecC-CCCeEEEEEEEcCCCCCCcc
Q psy3823 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR-HSGGLYACSAINSQGEGGST 204 (365)
Q Consensus 134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~s~ 204 (365)
.|+.+.|.|.+.|.|.+. ++|++++..+...........++.|.|.++.. .|+|.|+|.|.|..|...++
T Consensus 18 ~~~~~~l~C~~~g~p~p~-i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 18 DEGKVSLNCRARGSPPPT-YRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCCEEEEEEeeeEcCCCE-EEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 456899999999988887 99999999885433334455567899988875 89999999999999965543
No 180
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.12 E-value=2.8e-10 Score=78.42 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=46.2
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCC--CceeEecCCeEEEEEEccCC----CCCCeEEEEEEEeCCCCCc
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRP--LTSYSIQDGSTSVARYTPTS----ELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~~~~~~~~ 97 (365)
+.|.|.+.|+|.| .++|+|++.. +... ....... ..++|.|.++. .+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~-~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKF-FNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEE-ccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4799999999999 9999999986 5322 2222211 12378887764 2469999999999998654
No 181
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.12 E-value=6.2e-10 Score=78.55 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=60.6
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+..|+.+.|.|.+.+.|.+. +.|++++....................|.|.+++.+|.|.|.|.+.|..|..+.++.|.
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPT-ITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCe-EEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 66899999999999999998 99999876433211111111223345699999999999999999999999988777765
Q ss_pred E
Q psy3823 316 V 316 (365)
Q Consensus 316 v 316 (365)
|
T Consensus 85 v 85 (85)
T cd05729 85 V 85 (85)
T ss_pred C
Confidence 3
No 182
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.08 E-value=3.1e-09 Score=75.51 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=66.6
Q ss_pred eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCce-eE---eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823 234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YS---IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309 (365)
Q Consensus 234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~-~~---~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 309 (365)
..+..|+.+.|.|.+.++|+|..+.|.+++.......... .. ......+.|.+..++.+|+|.|+|.|.|..++.+
T Consensus 13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS 92 (101)
T ss_pred EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence 3489999999999999999997799999876433222211 11 1123568999999999999999999999999999
Q ss_pred ecEEEEEE
Q psy3823 310 TPCTFHVV 317 (365)
Q Consensus 310 ~~~~l~v~ 317 (365)
.++.|+|+
T Consensus 93 ~tF~l~v~ 100 (101)
T cd05860 93 VTFNVYVN 100 (101)
T ss_pred EEEEEEEe
Confidence 98888875
No 183
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.08 E-value=9.3e-10 Score=75.80 Aligned_cols=71 Identities=14% Similarity=0.301 Sum_probs=52.4
Q ss_pred EEEEEEEee-eCCCceeEEEeCCCCCCCCC-Cc--eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823 242 VLVSCTVDA-NPQAQYFTWAFNNSDTAPRP-LT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313 (365)
Q Consensus 242 ~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~-~~--~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 313 (365)
+.|.|.+.+ .|.+. +.|+++|....... .. .........+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~-~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLR-FKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCc-eEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999875 57777 99999887543221 11 22233345577999999999999999999999998877654
No 184
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.08 E-value=6.8e-10 Score=78.65 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=61.9
Q ss_pred CeEeeCCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe-EEEEEE
Q psy3823 12 PVCKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG-TLLCWA 89 (365)
Q Consensus 12 p~~~~~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a 89 (365)
|.+.........+.+|+.+.|.|. ..+.|.+ .|.|++++...+....+.....++ .|.|.+++..|.| .|.|.|
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a 78 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHA 78 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEE
Confidence 444455567788999999999998 7899999 999998876534443333333445 8999999999999 899999
Q ss_pred EeCCCC
Q psy3823 90 RNEQGN 95 (365)
Q Consensus 90 ~~~~~~ 95 (365)
.+....
T Consensus 79 ~~~~~~ 84 (95)
T cd05845 79 HFPGLR 84 (95)
T ss_pred Eccccc
Confidence 987543
No 185
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.07 E-value=1.1e-09 Score=75.42 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=51.4
Q ss_pred EEEEEEeC-CCCCcceEEEEeCCCcCCCCCCc----eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823 30 VLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLT----SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC 100 (365)
Q Consensus 30 ~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~ 100 (365)
+.|.|.+. +.|.+ .++|++++.. +..... .........+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 ~~L~C~a~~~~p~~-~~~W~~~g~~-i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSL-RFKWFKNGKE-IGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCC-ceEEEECCcc-cccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 47999954 46777 9999999987 653221 1222334556899999999999999999999998766544
No 186
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.06 E-value=6.8e-10 Score=79.06 Aligned_cols=79 Identities=18% Similarity=0.476 Sum_probs=60.8
Q ss_pred ceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCC--CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA--SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL 208 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l 208 (365)
.+.+|+++.|.|.+.+ |.+. +.|++++..+.... ..+.......|.|.++..+|+|.|.|.+.+..+.....++.|
T Consensus 7 ~v~~g~~v~L~C~~~~-p~~~-i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l 84 (89)
T cd04979 7 TVVEGNSVFLECSPKS-NLAS-VVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL 84 (89)
T ss_pred EEECCCcEEEEEeCCC-CCce-EEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence 5678999999999876 6665 99999988775432 122333456799999999999999999998877665566777
Q ss_pred EEe
Q psy3823 209 NIN 211 (365)
Q Consensus 209 ~v~ 211 (365)
.|.
T Consensus 85 ~V~ 87 (89)
T cd04979 85 NVL 87 (89)
T ss_pred EEe
Confidence 765
No 187
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.04 E-value=9.3e-10 Score=76.94 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=55.9
Q ss_pred EEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-c
Q psy3823 21 IYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-T 98 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~ 98 (365)
...+.+|+.++|.|... +.+.. .+.|+|++.. +... .....|.|.+++.+|+|.|+|.+.+..+... .
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~-~~~w~k~g~~-~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~ 77 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVY-KVTYYRDGKA-KKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSE 77 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcce-EEEEEECCeE-cccc--------CCCceEEECccCHHHCEEEEEEEEeCCceecCC
Confidence 34588999999999964 34556 8999999876 5321 1123799999999999999999999887544 5
Q ss_pred cEEEEE
Q psy3823 99 PCTFHV 104 (365)
Q Consensus 99 ~~~l~V 104 (365)
.+.|+|
T Consensus 78 ~~~i~~ 83 (83)
T cd05753 78 PVSITV 83 (83)
T ss_pred CEEEEC
Confidence 555553
No 188
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.03 E-value=1.7e-09 Score=76.32 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=59.4
Q ss_pred CceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 18 QQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
.++...+.+|++++|.|.+. +.|.+ .+.|++++.. +.... ...+ ..|.|.+++.+|+|.|+|.|.|..|..
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~-~~~~~---~~~~---~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAY-TLVWTRVGGG-LPSRA---MDFN---GILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCc-CCCcc---cccC---CEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 35567789999999999964 46777 9999999876 53321 1122 379999999999999999999988877
Q ss_pred cccEEE
Q psy3823 97 RTPCTF 102 (365)
Q Consensus 97 ~~~~~l 102 (365)
...+.|
T Consensus 79 ~~~~~l 84 (85)
T cd05754 79 EATATL 84 (85)
T ss_pred eEEEEE
Confidence 655544
No 189
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.03 E-value=1.3e-09 Score=77.58 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=58.0
Q ss_pred EEEEecCCcEEEEEEeC-C----CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 21 IYGALRNEQVLVSCTVD-A----NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~-~----~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
...+.+|+.+.|.|... . +|.+ .+.|+|++.. +........ .+ ..|.|.+++.+|+|.|+|.+.+..+.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~~-i~~~~~~~~-~~---~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCKL-LEGDRKRFV-KG---SKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCC-cEEEeECCEE-CCCCccEEe-cC---CEEEEeeCChhhCEEEEEEEEecCCC
Confidence 34578899999999832 2 3577 9999999988 765443222 33 38999999999999999999998877
Q ss_pred CcccEEEE
Q psy3823 96 QRTPCTFH 103 (365)
Q Consensus 96 ~~~~~~l~ 103 (365)
....++.+
T Consensus 78 ~~~~~t~t 85 (92)
T cd05757 78 KQYNVTRT 85 (92)
T ss_pred EEEEEEEE
Confidence 66444443
No 190
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.99 E-value=4.5e-09 Score=75.12 Aligned_cols=68 Identities=22% Similarity=0.453 Sum_probs=49.9
Q ss_pred cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCC-cccCeEEEEEEEcCCccce
Q psy3823 238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTS-ELEYGTLLCWARNEQGSQR 309 (365)
Q Consensus 238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~-~~d~G~Y~C~a~n~~g~~~ 309 (365)
.|..+.|.|.+.|.|.|. +.|++++..............++ .|.|.++. .+|+|.|+|.|.|..|...
T Consensus 18 ~~~~~~l~C~~~g~p~p~-i~W~k~~~~l~~~~~~~~~~~~~---~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPPT-YRWLMNGTEIDDEPDSRYSLVGG---NLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCCE-EEEEECCEECCCCCCCCEEEECC---EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 456799999999999998 99999887542221111112222 47788776 4899999999999999764
No 191
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.99 E-value=4.5e-09 Score=74.02 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=57.6
Q ss_pred CceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCC--Cc---eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823 239 NEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRP--LT---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC 312 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~--~~---~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 312 (365)
|+.+.|.|.+.+.+.+. .+.|..++....... .. .........+.|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78899999998766443 489988775321111 10 0011123467899999999999999999999999888888
Q ss_pred EEEEE
Q psy3823 313 TFHVV 317 (365)
Q Consensus 313 ~l~v~ 317 (365)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88775
No 192
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.98 E-value=3.7e-09 Score=69.52 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=49.3
Q ss_pred cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 26 ~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
+|+.++|.|.+.+.|.+ .+.|++++.. +. ...... .....|.|.+++.+|.|.|+|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~-~~-~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKP-LP-ESNRLS---ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEE-CC-CCCEEe---cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 58999999997778888 9999999887 65 221111 2223899999999999999999987653
No 193
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.98 E-value=2.7e-09 Score=73.00 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=50.9
Q ss_pred cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecC---CeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQD---GSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
.++|.|. .+++|.+ .|+||+++.. +...... ...+ ...++|.|.....+|++.|+|+|.|..+..
T Consensus 1 ~~~L~C~s~~skP~a-~i~W~k~~~~-l~~~~~~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAA-TLRWYRDRKE-LKGVISQ-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCC-eEEEEECCEE-CCCCccc-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 3789999 8899999 9999999998 7543221 1111 234579999999999999999999988764
No 194
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.97 E-value=1.9e-09 Score=75.37 Aligned_cols=66 Identities=12% Similarity=0.421 Sum_probs=53.7
Q ss_pred cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ 198 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 198 (365)
..+..|+++.|.|.+.+ +.+. +.|++||.++..... +....++.|.|.+++..|+|.|+|.+.+..
T Consensus 6 ~~v~~G~~v~L~C~~~~-~~~~-i~W~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 6 RTFKLGNNAELKCSPKS-NLAR-VVWKFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEEECCCCEEEEEECCC-CCCe-EEEEECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 46789999999999754 4554 999999999875432 345567789999999999999999998764
No 195
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.97 E-value=3.5e-09 Score=73.66 Aligned_cols=72 Identities=28% Similarity=0.617 Sum_probs=56.1
Q ss_pred cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN 209 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~ 209 (365)
..+.+|+.++|.|.+.+.|... +.|++++..+.... ..+.+..+..+|+|.|+|.+.+..+...+..+.|+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~--------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQ-VQWYKNGSPINSSQ--------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSE-EEEEETTEEEEEES--------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEccccee-eeeeeeeeeeeeee--------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 3578999999999999877755 99999988876322 12777889999999999999987665554555555
Q ss_pred E
Q psy3823 210 I 210 (365)
Q Consensus 210 v 210 (365)
|
T Consensus 80 V 80 (80)
T PF13895_consen 80 V 80 (80)
T ss_dssp E
T ss_pred C
Confidence 4
No 196
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.96 E-value=4.4e-09 Score=74.12 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=55.9
Q ss_pred eecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 236 ALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
+..|+.++|.|.+.+ .|.+. +.|++++..... .... ....|.|.+++.+|+|.|.|.|.|..|....++.|
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~-i~W~~~~~~~~~----~~~~---~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 13 VRPGADVSFICRAKSKSPAYT-LVWTRVGGGLPS----RAMD---FNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EcCCCCEEEEEEcCCCCCCcE-EEEEECCCcCCC----cccc---cCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 789999999999975 67776 999998764211 1111 12359999999999999999999999998887665
No 197
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.96 E-value=8.9e-09 Score=73.98 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=55.8
Q ss_pred eeecCceEEEEEEEeeeCCCceeEEEeCCCC-------CCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSD-------TAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQG 306 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~-------~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g 306 (365)
.+.+|+++.|.|.+.+.|.+. +.|++.+.. ......+... ........|.|.+++.+|+|.|+|.+.+..+
T Consensus 8 ~v~eG~~v~L~C~~~~~p~~~-v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~ 86 (95)
T cd07701 8 TVVEGGTANLTCRVDQNDNTS-LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV 86 (95)
T ss_pred EEecCCcEEEEEEEecCCceE-EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC
Confidence 388999999999999999998 999853211 1111223322 2223456799999999999999999998544
Q ss_pred cceecEEEEE
Q psy3823 307 SQRTPCTFHV 316 (365)
Q Consensus 307 ~~~~~~~l~v 316 (365)
. +....|.|
T Consensus 87 ~-~~~~~l~v 95 (95)
T cd07701 87 K-TSKAYLTV 95 (95)
T ss_pred c-cEEEEEEC
Confidence 3 45555543
No 198
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.96 E-value=8.5e-09 Score=74.36 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=55.7
Q ss_pred eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCC-------CCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP-------RPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~-------~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
+...+.+|++++|.|...+.+.+ .+.|++.+...+. ...+... ........|.|.+++.+|+|.|+|.+..
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 45678999999999998777888 9999864332010 1111111 1223345799999999999999999987
Q ss_pred CCCCCcccEEEEE
Q psy3823 92 EQGNQRTPCTFHV 104 (365)
Q Consensus 92 ~~~~~~~~~~l~V 104 (365)
... ......|+|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 543 345555543
No 199
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.95 E-value=6.2e-09 Score=74.19 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=58.0
Q ss_pred eEEEEecCCcEEEEEEe-C----------CCCCcceEEEEeCCCcCCCCCCc-----eeEecCCeEEEEEEccCCCCCCe
Q psy3823 20 RIYGALRNEQVLVSCTV-D----------ANPQAQYFTWAFNNSGTAPRPLT-----SYSIQDGSTSVARYTPTSELEYG 83 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~-~----------~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G 83 (365)
..+.+.+|+.+.|.|.. . ..+.. .++|+|++.. +..+.. .+... ....|.|.++..+|+|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~-~v~WyK~~~~-~~~~~~~~~~~~Ri~~--~~~~Lwf~Pa~~eDSG 83 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGL-SLMWYKSSGD-GEEPIEIIFDGVRMSK--EEDSIWFRPAELQDSG 83 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCc-eEEEEECCCC-CCCCCcccccceeEEE--eCCEEEEEeCChhhCe
Confidence 45788999999999984 2 11233 7999999765 443331 12221 2237999999999999
Q ss_pred EEEEEEEeCCCCCcccEEEEE
Q psy3823 84 TLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 84 ~Y~C~a~~~~~~~~~~~~l~V 104 (365)
.|+|.++|.....+..+.|+|
T Consensus 84 ~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 84 LYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEEEECCCCcceEEEEEEEC
Confidence 999999998877766666654
No 200
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.94 E-value=6e-09 Score=74.13 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=55.0
Q ss_pred eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CCC----CCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe-CC
Q psy3823 20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-APR----PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN-EQ 93 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~-~~ 93 (365)
..+.+.+|+++.|.|.. +.|.+ .+.||+.+... ... ... ....+ ..|.|.+++.+|+|.|+|.+.+ ..
T Consensus 4 ~~~~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r-~~~~~---~~L~I~~~~~~DsG~Y~C~a~~~~~ 77 (91)
T cd05871 4 KVVYGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEER-LIHTE---RGLLLRSLQRSDAGVYTCTAVEHSF 77 (91)
T ss_pred eEEEEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCcccccccccc-EEEec---CeEEEeeCChhHCEEEEEEEEccCC
Confidence 45667899999999996 47888 99999854320 111 111 11122 3699999999999999999985 44
Q ss_pred CCCcccEEEEE
Q psy3823 94 GNQRTPCTFHV 104 (365)
Q Consensus 94 ~~~~~~~~l~V 104 (365)
+.....++|+|
T Consensus 78 ~~~~~~~~l~v 88 (91)
T cd05871 78 SQTLAKYTLHV 88 (91)
T ss_pred eEEEEEEEEEE
Confidence 43447777777
No 201
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.93 E-value=4.4e-09 Score=69.72 Aligned_cols=61 Identities=25% Similarity=0.378 Sum_probs=45.8
Q ss_pred CCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCceeEe-cCC-eEEEEEEccCCCCCCeEEEEEE
Q psy3823 27 NEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSI-QDG-STSVARYTPTSELEYGTLLCWA 89 (365)
Q Consensus 27 G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~-~~~~l~i~~~~~~d~G~Y~C~a 89 (365)
|+.++|.|.+ ...+.. .+.|++++.. +......... ... ...+|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~-~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPT-TVTWSKNGQS-LPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTS-EEEEEETTTT-TSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCc-EEEEEECCcc-ccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999997 666666 9999999987 5444332222 222 2224999999999999999986
No 202
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.92 E-value=6.2e-09 Score=68.44 Aligned_cols=63 Identities=29% Similarity=0.559 Sum_probs=50.2
Q ss_pred cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199 (365)
Q Consensus 134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 199 (365)
+|++++|.|.+.+.+.+. +.|++++..+. ...........|.|.+++..|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPN-ITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCe-EEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 578999999987777766 99999988776 2222333466899999999999999999988654
No 203
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.92 E-value=2.1e-09 Score=76.34 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=54.6
Q ss_pred cceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEee-CCCCceEEe-eceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823 130 SVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISN-NASAGRIIT-NQTLVLQSVTRHSGGLYACSAINSQGEG 201 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~-~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 201 (365)
..+.+|+.+.|.|... |.|.+. +.|++++.++.. ....+.... ++.|.|.+++..|+|.|+|.|.|.....
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~-~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLS-YRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCE-EEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 4578999999999877 567666 999999876422 122233333 7899999999999999999999987543
No 204
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.92 E-value=1e-08 Score=73.49 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=54.6
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------CCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------RPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~ 307 (365)
+..|+++.|.|.+.+.|.+. +.|++++..... ...+..+ ........|.|.+++.+|+|.|+|.+... -.
T Consensus 9 v~~G~tv~L~C~v~g~~~~~-v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~ 86 (95)
T cd05882 9 VAVGGTVTLKCGVKEHDNSS-LQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PV 86 (95)
T ss_pred EecCCcEEEEEEEeCCCCCe-EEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-cc
Confidence 88999999999999999998 999987652111 0112221 22233567999999999999999999872 23
Q ss_pred ceecEEEE
Q psy3823 308 QRTPCTFH 315 (365)
Q Consensus 308 ~~~~~~l~ 315 (365)
.++..+|.
T Consensus 87 ~~~~~~~~ 94 (95)
T cd05882 87 RTAKATVT 94 (95)
T ss_pred ccEEEEEE
Confidence 33444443
No 205
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.90 E-value=1.2e-08 Score=71.89 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=55.4
Q ss_pred CCcEEEEEEeCCCC--CcceEEEEeCCCcCCCCCC--c----eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823 27 NEQVLVSCTVDANP--QAQYFTWAFNNSGTAPRPL--T----SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT 98 (365)
Q Consensus 27 G~~~~l~C~~~~~p--~~~~v~W~~~~~~~l~~~~--~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~ 98 (365)
|+++.|.|.+.+.+ .. .+.|.+++.. ..... . .........+.|.|.+++..|+|.|+|.|.|..+....
T Consensus 1 Ge~~~L~C~~~~~~~~~~-~~~W~~p~~~-~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGI-DFQWDYPGKK-EQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcE-EEEEEcCCcc-cccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 78999999965444 45 8999998865 32111 0 01112334568999999999999999999998887777
Q ss_pred cEEEEE
Q psy3823 99 PCTFHV 104 (365)
Q Consensus 99 ~~~l~V 104 (365)
...|.|
T Consensus 79 ~t~~~V 84 (86)
T cd05862 79 STIVIV 84 (86)
T ss_pred cEEEEE
Confidence 777776
No 206
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.89 E-value=3.1e-08 Score=69.43 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=60.7
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEeC-CCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAFN-NSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP 99 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~ 99 (365)
...+.+|+++.|.|...+.+.+ .+.|+++ +.. +................|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~-v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKL-LAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC-eEEEEECCCEE-cCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 3556899999999997776777 9999998 665 542333232233335689999999999999999999777666555
Q ss_pred EEEEE
Q psy3823 100 CTFHV 104 (365)
Q Consensus 100 ~~l~V 104 (365)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66655
No 207
>smart00409 IG Immunoglobulin.
Probab=98.89 E-value=3.1e-08 Score=69.43 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=60.7
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEeC-CCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAFN-NSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP 99 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~ 99 (365)
...+.+|+++.|.|...+.+.+ .+.|+++ +.. +................|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~-v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKL-LAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC-eEEEEECCCEE-cCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 3556899999999997776777 9999998 665 542333232233335689999999999999999999777666555
Q ss_pred EEEEE
Q psy3823 100 CTFHV 104 (365)
Q Consensus 100 ~~l~V 104 (365)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66655
No 208
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.88 E-value=4.8e-09 Score=74.64 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=54.1
Q ss_pred cceecCCcEEEEEEEEec-----CCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823 130 SVLNEGVDIYFDCHIQAN-----PPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~-----p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 201 (365)
..+.+|+++.|.|...+. |.+. +.|++|+.++..... ....++.|.|.++..+|+|.|+|.+.+..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~-i~Wyk~~~~i~~~~~--~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPP-VQWYKDCKLLEGDRK--RFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCc-EEEeECCEECCCCcc--EEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 356789999999976532 3455 999999998875332 22267899999999999999999999987653
No 209
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.87 E-value=1.2e-08 Score=72.63 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=51.0
Q ss_pred EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC-CCc------------eeEec---CCeEEEEEEccCCCCCCeEE
Q psy3823 22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR-PLT------------SYSIQ---DGSTSVARYTPTSELEYGTL 85 (365)
Q Consensus 22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~-~~~------------~~~~~---~~~~~~l~i~~~~~~d~G~Y 85 (365)
+.+.+|++++|.|...+.+.+ .+.|++++...... ... ..... ......|+|.+++.+|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 457899999999997778888 99999776430111 000 00001 22345799999999999999
Q ss_pred EEEEEeCCCC
Q psy3823 86 LCWARNEQGN 95 (365)
Q Consensus 86 ~C~a~~~~~~ 95 (365)
.|.+.+...+
T Consensus 81 ~C~v~~~~~~ 90 (94)
T cd07690 81 ICEVEDKKEE 90 (94)
T ss_pred EEEECCccce
Confidence 9999876543
No 210
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.85 E-value=1e-08 Score=72.69 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=56.6
Q ss_pred eecCccceeeeecCceEEEEEE-EeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCe-EEEEEEEc
Q psy3823 226 CKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG-TLLCWARN 303 (365)
Q Consensus 226 ~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G-~Y~C~a~n 303 (365)
+.........+.+|+.+.|.|. ..|.|.|. +.|+.++........+.....+| .|.|.+++.+|+| .|.|.|.|
T Consensus 5 ~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~-i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 5 WPKEKIRPVEVEEGDSVVLPCNPPKSAVPLR-IYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred CCccccceeEEecCCCEEEEecCCCCCCCCE-EEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEc
Confidence 3333334445899999999997 58999998 99997664322222222333344 4999999999999 79999999
Q ss_pred CCccc
Q psy3823 304 EQGSQ 308 (365)
Q Consensus 304 ~~g~~ 308 (365)
.....
T Consensus 81 ~~~~~ 85 (95)
T cd05845 81 PGLRT 85 (95)
T ss_pred ccccc
Confidence 86543
No 211
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.85 E-value=3.4e-08 Score=67.56 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=48.9
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeCCC---Cc-eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNNAS---AG-RIITNQTLVLQSVTRHSGGLYACSAINSQGEGG 202 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~---~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 202 (365)
++|.|...+..|+..|+||+|+.++..... .+ .....++|.+.....+|++.|+|+|.|+.+...
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~ 70 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ 70 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence 789999986444445999999999964321 11 122356799999999999999999999987643
No 212
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.84 E-value=1.5e-08 Score=67.08 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=42.8
Q ss_pred CceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeEeeCCCE--EEEEEcCCCcccCeEEEEEE
Q psy3823 239 NEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST--SVARYTPTSELEYGTLLCWA 301 (365)
Q Consensus 239 g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--s~l~i~~v~~~d~G~Y~C~a 301 (365)
|+.++|.|.+ .+.+... +.|++++........ ......... ..|.|.+++.+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~-~~W~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTT-VTWSKNGQSLPEGST-TNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSE-EEEEETTTTTSEEEE-EEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcE-EEEEECCccccCcce-eEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 5555665 999998874432211 111222221 23999999999999999987
No 213
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.83 E-value=4.9e-08 Score=69.49 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=52.2
Q ss_pred eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCC-------CCCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTA-------PRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l-------~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
..+.+.+|++++|.|.+.+.... .+.|++.+...+ ....+... ...+...+|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 34678999999999998777666 788887764411 22222222 2245677899999999999999999875
No 214
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.82 E-value=1.3e-08 Score=72.39 Aligned_cols=73 Identities=8% Similarity=0.119 Sum_probs=52.8
Q ss_pred EEEecCCcEEEEEE-eC----CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 22 YGALRNEQVLVSCT-VD----ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 22 ~~v~~G~~~~l~C~-~~----~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
..+.+|.+..|.|. .. .++.+ .++|||++.. +...........+ .+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~~-l~~~~~~~~~~~~-~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSVL-LDKDNEKFYSLKG-STYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCC-cEEEccCCEE-CcCCCcceEecCC-CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 34678999999997 22 34667 9999999988 6543322222111 2369999999999999999999986654
Q ss_pred c
Q psy3823 97 R 97 (365)
Q Consensus 97 ~ 97 (365)
.
T Consensus 82 ~ 82 (95)
T cd05897 82 K 82 (95)
T ss_pred E
Confidence 3
No 215
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.81 E-value=1.1e-08 Score=71.09 Aligned_cols=69 Identities=25% Similarity=0.387 Sum_probs=52.0
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc-cceecEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-SQRTPCTF 314 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l 314 (365)
+..|+.++|.|.+.+.|.+. +.|++++.... ..... +.+..+..+|.|.|+|.|.+..+ ..+.++.|
T Consensus 11 v~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~---------~~~~~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 11 VEEGDSVTLTCSVSGNPPPQ-VQWYKNGSPIN---------SSQNG--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp EETTSEEEEEEEEESSSSSE-EEEEETTEEEE---------EESSE--EEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEEccccee-eeeeeeeeeee---------eeeee--eeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 78999999999999888887 99999754221 11111 66788999999999999999665 44555555
Q ss_pred EE
Q psy3823 315 HV 316 (365)
Q Consensus 315 ~v 316 (365)
.|
T Consensus 79 ~V 80 (80)
T PF13895_consen 79 TV 80 (80)
T ss_dssp EE
T ss_pred eC
Confidence 54
No 216
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.81 E-value=1e-07 Score=67.79 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=67.5
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-eeEec----CCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQ----DGSTSVARYTPTSELEYGTLLCWARNE 92 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~a~~~ 92 (365)
+.....|.+|+.+.|.|..++.|.+..+.|.+++.. +..... ..... ..-.+.|.+..+..+|.|.|+|.|.|.
T Consensus 9 ~~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~-l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~ 87 (101)
T cd05860 9 INTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT-LTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNS 87 (101)
T ss_pred CCceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc-cCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECC
Confidence 345677999999999999999999934999999876 433332 11111 124468999999999999999999999
Q ss_pred CCCCcccEEEEE
Q psy3823 93 QGNQRTPCTFHV 104 (365)
Q Consensus 93 ~~~~~~~~~l~V 104 (365)
......++.|.|
T Consensus 88 ~~~~s~tF~l~v 99 (101)
T cd05860 88 DASASVTFNVYV 99 (101)
T ss_pred CCeEEEEEEEEE
Confidence 988888888876
No 217
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.78 E-value=5.7e-08 Score=67.47 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=55.8
Q ss_pred eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-c
Q psy3823 20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-T 98 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~ 98 (365)
....+.+|+++.|.|...+ +.+ .+.|++++.. +...........+ |.|.+++.+|+|.|.|.+.-...... .
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A-~v~W~~ng~~-l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E~gf~~~~~ 76 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLA-SPVWLFNGTP-LNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEEEGFQQLVA 76 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCc-cEEEEECCcc-cCCCcceEEeCCC----CEEEECCHhhCEEEEEEEecCCCeEEEE
Confidence 4567899999999999766 466 9999999998 6543332323333 77899999999999999874332222 4
Q ss_pred cEEEEE
Q psy3823 99 PCTFHV 104 (365)
Q Consensus 99 ~~~l~V 104 (365)
.+.|.|
T Consensus 77 ~y~l~v 82 (85)
T cd05872 77 SYSLNV 82 (85)
T ss_pred EEEEEE
Confidence 455554
No 218
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.77 E-value=8.1e-08 Score=68.29 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=55.7
Q ss_pred eeecCceEEEEEEEeeeCCCceeEEEeCCCCCC--CCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEEEE-cCCcccee
Q psy3823 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA--PRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWAR-NEQGSQRT 310 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~--~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~-n~~g~~~~ 310 (365)
.+.+|+.+.|.|.. +.|.|. +.|++.+.... ... ...+..... ..|.|.+++.+|+|.|+|.|. |..+....
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p~-v~Wykq~~g~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~ 82 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQAS-VKWLFQRGGDQRKEEVKTEERLIHTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQTLA 82 (91)
T ss_pred EEecCCcEEEEEEC-CCCCce-EEEEEECCCCCccccccccccEEEec--CeEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence 37889999999996 478887 99998432111 111 011111111 239999999999999999998 57776777
Q ss_pred cEEEEEEc
Q psy3823 311 PCTFHVVK 318 (365)
Q Consensus 311 ~~~l~v~~ 318 (365)
.++|+|..
T Consensus 83 ~~~l~v~~ 90 (91)
T cd05871 83 KYTLHVIE 90 (91)
T ss_pred EEEEEEec
Confidence 88887764
No 219
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.76 E-value=3.7e-08 Score=70.12 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=51.5
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-CC------------ceeE---eeCCCEEEEEEcCCCcccCeEEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-PL------------TSYS---IQDGSTSVARYTPTSELEYGTLLC 299 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-~~------------~~~~---~~~~~~s~l~i~~v~~~d~G~Y~C 299 (365)
+..|+.++|.|.+.+.+.+. +.|++++...... .+ +... ........|.|.+++.+|+|.|.|
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~-i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcE-EEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 67899999999999888887 9999665321110 00 0101 112345679999999999999999
Q ss_pred EEEcCCccc
Q psy3823 300 WARNEQGSQ 308 (365)
Q Consensus 300 ~a~n~~g~~ 308 (365)
.|.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 999876654
No 220
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.74 E-value=2.1e-07 Score=65.06 Aligned_cols=79 Identities=27% Similarity=0.353 Sum_probs=59.8
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeC-CCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFN-NSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
+..|+.+.|.|.+.+.+.+. +.|+++ +.... ...............|.|.+++.+|+|.|.|.+.+..+.....+.|
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 6 VKEGESVTLSCEVSGSPPPE-VTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EeCCCeEEEEEEEccCCCCe-EEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 77899999999998887776 999998 44322 2233333333335679999999999999999999988887766666
Q ss_pred EE
Q psy3823 315 HV 316 (365)
Q Consensus 315 ~v 316 (365)
.|
T Consensus 84 ~V 85 (86)
T smart00410 84 TV 85 (86)
T ss_pred EE
Confidence 55
No 221
>smart00409 IG Immunoglobulin.
Probab=98.74 E-value=2.1e-07 Score=65.06 Aligned_cols=79 Identities=27% Similarity=0.353 Sum_probs=59.8
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeC-CCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFN-NSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
+..|+.+.|.|.+.+.+.+. +.|+++ +.... ...............|.|.+++.+|+|.|.|.+.+..+.....+.|
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 6 VKEGESVTLSCEVSGSPPPE-VTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EeCCCeEEEEEEEccCCCCe-EEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 77899999999998887776 999998 44322 2233333333335679999999999999999999988887766666
Q ss_pred EE
Q psy3823 315 HV 316 (365)
Q Consensus 315 ~v 316 (365)
.|
T Consensus 84 ~V 85 (86)
T smart00409 84 TV 85 (86)
T ss_pred EE
Confidence 55
No 222
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.72 E-value=1.9e-07 Score=67.30 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=54.0
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCC-------CCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDT-------APRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~-------~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~ 307 (365)
+.+|+.++|.|.+.+.+.+. +.|++.+... .....++.. ........|.|.+++.+|+|.|+|.+.+...
T Consensus 9 v~~G~~v~L~C~~~~~~~~~-v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~- 86 (95)
T cd05717 9 VVEGGTATLKCRVKNNDNSS-LQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV- 86 (95)
T ss_pred EcCCCCEEEEEEECCCCCce-EEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-
Confidence 78999999999998877777 9998533211 011122222 2223445799999999999999999997653
Q ss_pred ceecEEEEE
Q psy3823 308 QRTPCTFHV 316 (365)
Q Consensus 308 ~~~~~~l~v 316 (365)
.+..+.|.|
T Consensus 87 ~~~~~~~~v 95 (95)
T cd05717 87 QTAKATVTV 95 (95)
T ss_pred ceEEEEEEC
Confidence 355555543
No 223
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.70 E-value=9.1e-08 Score=68.22 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=57.6
Q ss_pred CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEE
Q psy3823 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI 195 (365)
Q Consensus 116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 195 (365)
+|.+.+.+. ..+.+|++|+|.|... .+... +.|+++|...... ..........+.|.+++.+|+|.|+|.+.
T Consensus 2 kP~L~a~p~-----~vV~~G~~VtL~C~~~-~~~~~-f~l~k~g~~~~~~-~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEPS-----SVVPLGKPVTLRCQGP-YGAVE-YRLYREGSTFAVK-KPPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecCC-----CccCCCCcEEEEEecC-CCCCE-EEEEECCCCcccc-ccCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 456555542 3678999999999875 33334 8999988754321 11111224679999999999999999998
Q ss_pred cCC-C-CCCcccEEEEE
Q psy3823 196 NSQ-G-EGGSTPFDLNI 210 (365)
Q Consensus 196 ~~~-~-~~~s~~~~l~v 210 (365)
+.. + ...+..+.|.|
T Consensus 74 ~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 74 SGVALWSEPSDPLELVV 90 (91)
T ss_pred CCCCccCCCCCcEEEEe
Confidence 763 2 23444455544
No 224
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.67 E-value=1.6e-07 Score=65.62 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=48.6
Q ss_pred cEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCcee-EecCC----eEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 29 QVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSY-SIQDG----STSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 29 ~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~-~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.+.|.|.+. ++|.+ .++|++++.. +....... ...++ ..+.|.+.+...+|.|.|+|.|.|......
T Consensus 1 ~~~L~C~v~g~~P~~-~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~ 73 (82)
T cd05759 1 PYNLTCRARGAKPAA-EIIWFRDGEV-LDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG 73 (82)
T ss_pred CEEEEEEEeCccCCC-EEEEEECCEE-ccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence 368999964 47988 9999999987 65433211 11222 345788988888899999999998776554
No 225
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.67 E-value=8.2e-08 Score=68.50 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=51.5
Q ss_pred ceecCCcEEEEEEEE----------ecCCCCeeEEEeCCeEEeeCCC-----CceEEeeceEEEeeecCCCCeEEEEEEE
Q psy3823 131 VLNEGVDIYFDCHIQ----------ANPPYKKLIWTHNGITISNNAS-----AGRIITNQTLVLQSVTRHSGGLYACSAI 195 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~----------~~p~~~~i~W~~~~~~l~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 195 (365)
.+.+|+.+.|.|..- +.....++.|+|++..+..... .++......|.|.++..+|+|.|+|.+.
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r 90 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR 90 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence 577999999999851 1122334999999755543221 2455567899999999999999999999
Q ss_pred cCCCC
Q psy3823 196 NSQGE 200 (365)
Q Consensus 196 ~~~~~ 200 (365)
|....
T Consensus 91 N~t~C 95 (104)
T cd05896 91 NSTYC 95 (104)
T ss_pred CCCcc
Confidence 87643
No 226
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.67 E-value=1.6e-07 Score=64.52 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=55.6
Q ss_pred cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee-E--ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-ccEEEE
Q psy3823 29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY-S--IQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TPCTFH 103 (365)
Q Consensus 29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~-~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~~~l~ 103 (365)
.+.|.|. .+++|.+ .++||+++.. +....... . ......++|.|.+...+|+..|+|.|.|..-... ....|.
T Consensus 1 ~~~L~C~s~gSkP~A-~I~W~k~~~~-l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~ 78 (82)
T cd05883 1 EIELNCTAMASKPAA-TIRWFKGNKE-LTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE 78 (82)
T ss_pred CEEEEEEecCCCCCC-EEEEEECCEE-CcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence 3689999 8889999 9999999998 76543311 1 1234677899999999999999999998664322 556666
Q ss_pred E
Q psy3823 104 V 104 (365)
Q Consensus 104 V 104 (365)
|
T Consensus 79 V 79 (82)
T cd05883 79 V 79 (82)
T ss_pred E
Confidence 5
No 227
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.65 E-value=1.7e-07 Score=68.20 Aligned_cols=81 Identities=9% Similarity=0.046 Sum_probs=53.4
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC--------C-----------CceeEecCCeEEEEEEccCC
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR--------P-----------LTSYSIQDGSTSVARYTPTS 78 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~--------~-----------~~~~~~~~~~~~~l~i~~~~ 78 (365)
++....+.+|+++.|.|.....+.. .++|+|+... ... . .+.....++ +|.|.+++
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~-~~~W~kg~~~-~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~ 78 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLL-AYAWYKGKTV-SPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVT 78 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCce-EEEEEcCCCC-CCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCC
Confidence 4455667899999999974333334 9999997432 100 0 001122334 89999999
Q ss_pred CCCCeEEEEEEEeCCCC-CcccEEEE
Q psy3823 79 ELEYGTLLCWARNEQGN-QRTPCTFH 103 (365)
Q Consensus 79 ~~d~G~Y~C~a~~~~~~-~~~~~~l~ 103 (365)
..|+|.|+|.+.+.... ....+.|.
T Consensus 79 ~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 79 QKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred cccCEEEEEEEEeCCccEEEEEEEEE
Confidence 99999999999887643 23555544
No 228
>PHA03376 BARF1; Provisional
Probab=98.64 E-value=4.7e-07 Score=70.65 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=74.9
Q ss_pred EEEEecCCcEEEEEEeC--CCCCcceEEEEeCCC----cCCCC----------CCcee--EecCCeEEEEEEccCCCCCC
Q psy3823 21 IYGALRNEQVLVSCTVD--ANPQAQYFTWAFNNS----GTAPR----------PLTSY--SIQDGSTSVARYTPTSELEY 82 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~--~~p~~~~v~W~~~~~----~~l~~----------~~~~~--~~~~~~~~~l~i~~~~~~d~ 82 (365)
.+.+..|+.+.|+|... .......+.|+|.+. ..+.. ..+.+ ...+...-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 56678899999999833 222223999999532 10100 00001 11122445799999999999
Q ss_pred eEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCe
Q psy3823 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGI 160 (365)
Q Consensus 83 G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~ 160 (365)
|+|+|............-.|++ ..|-.+.++... .....-+..++.|..-|+|.|. +.|..+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~---------V~~~~Lsv~a~~----~dFp~~~~~~i~C~sggfP~P~-~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSV---------VKPLTLSVHSER----SQFPDFSVLTVTCTVNAFPHPH-VQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeee---------eecceEEEEecc----ccCCCCCeeEEEEecCCcCCch-heeccccC
Confidence 9999998754432223333443 223333443321 0122246678999976888888 99997543
No 229
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.63 E-value=2.9e-07 Score=65.61 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=48.3
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE 304 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~ 304 (365)
+..|++++|.|... .+... +.|+++|....... ....+....|.|.+++.+|+|.|+|.+.+.
T Consensus 13 V~~G~~VtL~C~~~-~~~~~-f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 13 VPLGKPVTLRCQGP-YGAVE-YRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred cCCCCcEEEEEecC-CCCCE-EEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 78999999999885 55565 99999887432211 112344567999999999999999999987
No 230
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.60 E-value=4.7e-07 Score=67.15 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=51.2
Q ss_pred CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC--------------C--CCceeE-ecCCeEEEEEEccCCC
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP--------------R--PLTSYS-IQDGSTSVARYTPTSE 79 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~--------------~--~~~~~~-~~~~~~~~l~i~~~~~ 79 (365)
.++...+.+|++++|.|...+ +.. .+.|||..... .. . ..+... ........|.|.+++.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 456788999999999999765 666 89999964310 00 0 011111 1222456899999999
Q ss_pred CCCeEEEEEEEeCC
Q psy3823 80 LEYGTLLCWARNEQ 93 (365)
Q Consensus 80 ~d~G~Y~C~a~~~~ 93 (365)
+|+|.|.|.+....
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999987643
No 231
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.59 E-value=5.4e-07 Score=61.90 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=54.3
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeCCCC-----ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNNASA-----GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~ 211 (365)
+.|.|.+.|..|+..|+||+++.++...... ......++|.+..-..+|+..|+|+|.|+.-........|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 6899999986666669999999988653211 1122356788888888899999999999865444456677766
No 232
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.58 E-value=7.8e-07 Score=65.88 Aligned_cols=74 Identities=11% Similarity=0.182 Sum_probs=51.8
Q ss_pred ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEe--cCCeEEEEEEccCCCCCCe
Q psy3823 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSI--QDGSTSVARYTPTSELEYG 83 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~G 83 (365)
+..+.+.+|++++|.|...+.+.. .+.||+..... . ....+.... .......|.|.+++.+|+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 456778999999999997666666 99999864210 0 001111111 2235668999999999999
Q ss_pred EEEEEEEeCC
Q psy3823 84 TLLCWARNEQ 93 (365)
Q Consensus 84 ~Y~C~a~~~~ 93 (365)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998654
No 233
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.57 E-value=5e-07 Score=63.07 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=48.5
Q ss_pred EEEEEEEee-eCCCceeEEEeCCCCCCCCCCceeEeeCC----CEEEEEEcCCCcccCeEEEEEEEcCCccc--eecEEE
Q psy3823 242 VLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQDG----STSVARYTPTSELEYGTLLCWARNEQGSQ--RTPCTF 314 (365)
Q Consensus 242 ~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l 314 (365)
+.|.|.+.| .|.+. +.|+++|..............++ ..+.|.+.....+|.|.|+|.|.|..... +.+++|
T Consensus 2 ~~L~C~v~g~~P~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAE-IIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCE-EEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999987 58787 99999886543221111112232 24578888888888999999999977543 344443
No 234
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.57 E-value=2e-07 Score=63.64 Aligned_cols=74 Identities=28% Similarity=0.536 Sum_probs=48.6
Q ss_pred CeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEc
Q psy3823 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN 196 (365)
Q Consensus 117 p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 196 (365)
|.+.+.+.. .+..+..++|.|.+.+.+++..+.|+ +..................|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~-----~~~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPP-----VVTSGGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTS-----EEETTEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCC-----cEeeceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 555555432 23344449999999987755559999 222221111122333467899999999999999999986
No 235
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.56 E-value=2.2e-07 Score=64.50 Aligned_cols=77 Identities=17% Similarity=0.400 Sum_probs=55.9
Q ss_pred cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN 209 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~ 209 (365)
..+.+|+++.|.|...+.. .. +.|+++|..+... .+.......|.|..++..|+|.|.|.+.-......-..+.|.
T Consensus 6 ~tv~~g~~v~L~C~~~s~~-A~-v~W~~ng~~l~~~--~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~ 81 (85)
T cd05872 6 RTVAPGADVVLPCQLRSNL-AS-PVWLFNGTPLNAQ--FSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLN 81 (85)
T ss_pred EEEecCCCEEEECCCCCCC-cc-EEEEECCcccCCC--cceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEE
Confidence 4678999999999987753 34 9999999988642 334555667889999999999999998744332222334444
Q ss_pred E
Q psy3823 210 I 210 (365)
Q Consensus 210 v 210 (365)
|
T Consensus 82 v 82 (85)
T cd05872 82 V 82 (85)
T ss_pred E
Confidence 4
No 236
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.55 E-value=2.2e-07 Score=66.09 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=49.6
Q ss_pred eecCceEEEEEEE-eee----CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823 236 ALRNEQVLVSCTV-DAN----PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309 (365)
Q Consensus 236 ~~~g~~~~l~C~~-~~~----p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 309 (365)
+..|....|.|.- .++ +.+. +.|++++.+............+ .+.|.|.++..+|+|.|+|.|.+..|...
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~-v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVE-LQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCc-EEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 6678899999963 333 5556 9999998753322211111112 23599999999999999999999987653
No 237
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.54 E-value=3.9e-07 Score=65.23 Aligned_cols=75 Identities=9% Similarity=0.007 Sum_probs=54.0
Q ss_pred EEEEecCCcEEEEEE-eCCCCCcc-eEEEEeCCCcCCCCCCcee--EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 21 IYGALRNEQVLVSCT-VDANPQAQ-YFTWAFNNSGTAPRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~-~~~~p~~~-~v~W~~~~~~~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
...+.+|+.++|.|. .++.|.+. .++||+++.. +....... ........+|.+.....+|...|+|.|.+.....
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~-l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNET-LSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEE-cccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 344689999999999 66788882 3799999998 65533211 1123345578888777878889999999877654
No 238
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.54 E-value=1.3e-06 Score=62.19 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=49.4
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------CCCCceeEee-CCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------PRPLTSYSIQ-DGSTSVARYTPTSELEYGTLLCWARN 303 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------~~~~~~~~~~-~~~~s~l~i~~v~~~d~G~Y~C~a~n 303 (365)
+.+|++++|.|.+.+..... +.|++.+.... ....++.... ++....|.|++++.+|+|.|.|.+..
T Consensus 9 v~~G~ta~L~C~v~~~~~~~-v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 9 VVEGEVAIISCRVKNNDDSV-IQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EcCCCcEEEEEEEccCCccE-EEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 88999999999998876665 88886653211 1222333222 46677899999999999999999975
No 239
>PHA03376 BARF1; Provisional
Probab=98.52 E-value=8.3e-06 Score=63.83 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=72.3
Q ss_pred ceecCCcEEEEEEEE--ecCCCCeeEEEeCC----eEEe----------eCCCCceE-----EeeceEEEeeecCCCCeE
Q psy3823 131 VLNEGVDIYFDCHIQ--ANPPYKKLIWTHNG----ITIS----------NNASAGRI-----ITNQTLVLQSVTRHSGGL 189 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~--~~p~~~~i~W~~~~----~~l~----------~~~~~~~~-----~~~~~l~i~~~~~~d~G~ 189 (365)
....|+++.|.|... ......+|.|++.+ ..+- .....+.. ..+.+|.|.+++..|.|.
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt 101 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 101 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence 566899999999765 22344558999942 2111 11111111 125579999999999999
Q ss_pred EEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceec-CccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCC
Q psy3823 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQ-SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP 268 (365)
Q Consensus 190 Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~ 268 (365)
|+|.+........ ..-.|++. -+-..+. ..... ...-....+.|...|+|.|. +.|..+.+.+..
T Consensus 102 Y~C~fQkge~~~~-k~ehLt~V----------~~~~Lsv~a~~~d--Fp~~~~~~i~C~sggfP~P~-~~Wle~~~~~~~ 167 (221)
T PHA03376 102 YLCRMKLGETEVT-KQEHLSVV----------KPLTLSVHSERSQ--FPDFSVLTVTCTVNAFPHPH-VQWLMPEGVEPA 167 (221)
T ss_pred EEEEEEcCCCcee-eeeeeeee----------ecceEEEEecccc--CCCCCeeEEEEecCCcCCch-heeccccCCCCC
Confidence 9999986543222 11122222 0000110 00111 11246678899988899998 999987654433
No 240
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.47 E-value=1.1e-06 Score=64.74 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=51.8
Q ss_pred cCCcEEEEEEeCCCC-----CcceEEEEeCCCc-------CCCCCC----------ceeE-ecCCeEEEEEEccCCCCCC
Q psy3823 26 RNEQVLVSCTVDANP-----QAQYFTWAFNNSG-------TAPRPL----------TSYS-IQDGSTSVARYTPTSELEY 82 (365)
Q Consensus 26 ~G~~~~l~C~~~~~p-----~~~~v~W~~~~~~-------~l~~~~----------~~~~-~~~~~~~~l~i~~~~~~d~ 82 (365)
.|++++|.|.....| ....+.|+|.... .+.... +... .......+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999854442 2227999996421 000000 0011 1112345899999999999
Q ss_pred eEEEEEEEeCCCCCcccEEEEE
Q psy3823 83 GTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 83 G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
|.|.|.+.+..+.....+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v 102 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRL 102 (106)
T ss_pred EEEEEEEEecccceEEEEEEEE
Confidence 9999999887776667777777
No 241
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.46 E-value=1.8e-06 Score=61.85 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=47.5
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
...|.+|++|+|.|.... +.. .+.|+|++.. .................|.|.+++.+|+|.|+|....
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~-~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFD-RFILYKEGRS-KPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCC-EEEEEECCCC-CCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 345789999999998543 445 8999999876 3221100111233445789999999999999999753
No 242
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.45 E-value=1.2e-06 Score=62.71 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=48.2
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC--------Cc--------eeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP--------LT--------SYSIQDGSTSVARYTPTSELEYGTLLCWAR 90 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~--------~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 90 (365)
|++|+|.|.....+.. .+.|+++... .... .. .+...... .+|.|.+++.+|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~-~i~W~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQ-EITWYKGKDK-SVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCE-EEEEECCCCC-CcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEE
Confidence 8999999985544555 9999998754 2110 00 01111112 589999999999999999998
Q ss_pred eCCCCCc-ccEEE
Q psy3823 91 NEQGNQR-TPCTF 102 (365)
Q Consensus 91 ~~~~~~~-~~~~l 102 (365)
...+... ..+.|
T Consensus 78 ~~~~~~~~~~~~l 90 (92)
T cd05741 78 STNGVTENAKFFL 90 (92)
T ss_pred cCCCcEEEEEEEE
Confidence 7664332 44444
No 243
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.44 E-value=2.1e-06 Score=63.18 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=54.2
Q ss_pred cCceEEEEEEEeeeC-----CCceeEEEeCCCCCCCC-----------------CCceeEee-CCCEEEEEEcCCCcccC
Q psy3823 238 RNEQVLVSCTVDANP-----QAQYFTWAFNNSDTAPR-----------------PLTSYSIQ-DGSTSVARYTPTSELEY 294 (365)
Q Consensus 238 ~g~~~~l~C~~~~~p-----~~~~~~W~~~~~~~~~~-----------------~~~~~~~~-~~~~s~l~i~~v~~~d~ 294 (365)
.|++++|.|.....| ....+.|++........ ..+..+.. ......|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 11159999864211100 01111111 12245699999999999
Q ss_pred eEEEEEEEcCCccceecEEEEEE
Q psy3823 295 GTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 295 G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
|.|.|.+.+..+..+..+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999999988888877775
No 244
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.42 E-value=2.2e-06 Score=63.06 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=54.8
Q ss_pred cCceEEEEEEEeeeC------CCceeEEEeCCCCCCCC-------CCc--------eeE---eeCCCEEEEEEcCCCccc
Q psy3823 238 RNEQVLVSCTVDANP------QAQYFTWAFNNSDTAPR-------PLT--------SYS---IQDGSTSVARYTPTSELE 293 (365)
Q Consensus 238 ~g~~~~l~C~~~~~p------~~~~~~W~~~~~~~~~~-------~~~--------~~~---~~~~~~s~l~i~~v~~~d 293 (365)
.|++++|.|.....+ .. .+.|++........ ... .+. ........|.|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGP-RIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCc-EEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHH
Confidence 489999999997653 23 59999863100000 000 011 112345679999999999
Q ss_pred CeEEEEEEEcCCccceecEEEEEEc
Q psy3823 294 YGTLLCWARNEQGSQRTPCTFHVVK 318 (365)
Q Consensus 294 ~G~Y~C~a~n~~g~~~~~~~l~v~~ 318 (365)
+|.|.|.+.+..+..+..+.|.|..
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999999888888888887763
No 245
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.42 E-value=1.5e-06 Score=63.89 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=52.0
Q ss_pred cCCcEEEEEEeCCCC-----CcceEEEEeCC--C-c----CCCCCCc--------eeE---ecCCeEEEEEEccCCCCCC
Q psy3823 26 RNEQVLVSCTVDANP-----QAQYFTWAFNN--S-G----TAPRPLT--------SYS---IQDGSTSVARYTPTSELEY 82 (365)
Q Consensus 26 ~G~~~~l~C~~~~~p-----~~~~v~W~~~~--~-~----~l~~~~~--------~~~---~~~~~~~~l~i~~~~~~d~ 82 (365)
.|++++|.|.....+ ....+.|++.. . . .+..... .+. .......+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999954432 22399999973 1 1 0000000 011 1123456899999999999
Q ss_pred eEEEEEEEeCCCCCcccEEEEE
Q psy3823 83 GTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 83 G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
|.|.|.+.+..+.....+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEE
Confidence 9999999987665567777777
No 246
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.42 E-value=3.3e-06 Score=62.12 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=49.0
Q ss_pred ceEEEEecCCcEEEEEEeCCCC-CcceEEEEeCCCc----CCC-------C--CCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823 19 QRIYGALRNEQVLVSCTVDANP-QAQYFTWAFNNSG----TAP-------R--PLTSYSIQDGSTSVARYTPTSELEYGT 84 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p-~~~~v~W~~~~~~----~l~-------~--~~~~~~~~~~~~~~l~i~~~~~~d~G~ 84 (365)
+....+.+|++++|.|...+.. .. .+.|||.... .+. . ..+...........|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSN-YLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCC-cEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 4567789999999999975554 45 8999985421 000 0 011111223345579999999999999
Q ss_pred EEEEEEe
Q psy3823 85 LLCWARN 91 (365)
Q Consensus 85 Y~C~a~~ 91 (365)
|.|.+.+
T Consensus 86 Y~Ca~~~ 92 (106)
T cd04980 86 YYCQQYG 92 (106)
T ss_pred EEEEEeC
Confidence 9999864
No 247
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.41 E-value=1.7e-06 Score=63.55 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=48.4
Q ss_pred EEecCCcEEEEEEeCCC-CCcceEEEEeCCCcC-CC---------------CCCceeEe--cCCeEEEEEEccCCCCCCe
Q psy3823 23 GALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGT-AP---------------RPLTSYSI--QDGSTSVARYTPTSELEYG 83 (365)
Q Consensus 23 ~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~-l~---------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G 83 (365)
.+.+|++++|.|..... +.. .+.|++..... .. ...+.... ......+|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSY-YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcc-eEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 47899999999996554 455 99999964310 00 00111111 1125568999999999999
Q ss_pred EEEEEEEeCCC
Q psy3823 84 TLLCWARNEQG 94 (365)
Q Consensus 84 ~Y~C~a~~~~~ 94 (365)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 248
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.40 E-value=0.00021 Score=63.25 Aligned_cols=206 Identities=13% Similarity=0.131 Sum_probs=114.2
Q ss_pred EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc--ccEE
Q psy3823 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR--TPCT 101 (365)
Q Consensus 24 v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~--~~~~ 101 (365)
+.+|+.+.+.-..+. -.. .+.|--+... -.........+..-...|.|..++...+|.|+=...+..+... ..++
T Consensus 139 a~~~g~l~y~sa~~~-~~~-~~~~a~ga~P-g~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~Vt 215 (466)
T PHA03270 139 APPGGELVYDSAPNR-TDP-RVRWAEGAGP-GARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTR 215 (466)
T ss_pred cCCCceEEeccCccc-cCc-ccccccCCCC-CCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEEE
Confidence 345666655443321 233 6777643322 1111111112233334799999999999999998777665433 4456
Q ss_pred EEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-C-CCCeeEEEeCCeEEeeCCCCceEE---eece
Q psy3823 102 FHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-P-PYKKLIWTHNGITISNNASAGRII---TNQT 176 (365)
Q Consensus 102 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~i~W~~~~~~l~~~~~~~~~~---~~~~ 176 (365)
+.. +.+|.+.+.+. .+.+|+...-.|.+..+ | ...++.||.|+.++.......... .++.
T Consensus 216 V~~---------yr~Psvsv~~~------PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGf 280 (466)
T PHA03270 216 VRM---------FRRPSLSIRPH------AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGF 280 (466)
T ss_pred EEE---------ecCCcccccCC------ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCe
Confidence 665 77888777554 36699999999999854 3 334588999999885322111111 1222
Q ss_pred EEEeeecCCCC------eEEEEEEEcC-CCCCC---cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEE
Q psy3823 177 LVLQSVTRHSG------GLYACSAINS-QGEGG---STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC 246 (365)
Q Consensus 177 l~i~~~~~~d~------G~Y~C~~~~~-~~~~~---s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C 246 (365)
..++-++..+. -+.+|++.-. ..... +....-.|. .+|.+.. ....|+- .|
T Consensus 281 s~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY----------~~P~Isv------~F~dG~A---VC 341 (466)
T PHA03270 281 SATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVL----------PRPTIEM------EFGGDEA---VC 341 (466)
T ss_pred eEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccc----------cCCeEEE------EEeCCEE---EE
Confidence 22333333222 3679998633 22222 222233333 4444332 1333333 38
Q ss_pred EEeeeCCCceeEEEeCCCCC
Q psy3823 247 TVDANPQAQYFTWAFNNSDT 266 (365)
Q Consensus 247 ~~~~~p~~~~~~W~~~~~~~ 266 (365)
++.--|....+.|+.++...
T Consensus 342 tA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 342 TAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred eccccCCCCEEEEEecCCCC
Confidence 88766655579999877544
No 249
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.39 E-value=2.4e-06 Score=59.53 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=47.0
Q ss_pred cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEe-cCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDG---STSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.+.|.|. .+++|.+ .++|++++.. +......... .++ ..+.|.+.....++.+.|+|.|.+......
T Consensus 1 ~~~L~C~~~~~~P~~-~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~~ 72 (82)
T cd05761 1 EVELTCTSSGSKPAA-TIRWFKGDKE-LKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKST 72 (82)
T ss_pred CEEEEEEecCcCcCC-eEEEEECCEE-ccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCCC
Confidence 3689999 5667998 9999999988 6543311111 222 334577777777788999999998776653
No 250
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.39 E-value=2e-06 Score=62.09 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCc---CC-----CCCCc---------eeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSG---TA-----PRPLT---------SYSIQDGSTSVARYTPTSELEYGTLLCWA 89 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~---~l-----~~~~~---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 89 (365)
|++++|.|..........+.|+|.... .+ ..... ..........+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998544433337999985321 00 00000 01112234568999999999999999997
Q ss_pred E-eCCCCCcccEEEEE
Q psy3823 90 R-NEQGNQRTPCTFHV 104 (365)
Q Consensus 90 ~-~~~~~~~~~~~l~V 104 (365)
. .+.|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 46666667788877
No 251
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.39 E-value=3.6e-06 Score=58.66 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=48.0
Q ss_pred cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeE-ecCC-e---EEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDG-S---TSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~-~---~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
.++|.|. .+++|.+ .|+|++++.. +........ ..++ + .+.|.+.....+|...|+|.|.+.....
T Consensus 1 ~~~LtC~a~g~~P~~-~ItW~k~g~~-l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 1 KAKLRCTSSGSKPAA-NIKWRKGDQE-LEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred CEEEEEEecCccCCC-EeEEEECCEE-CCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 3689999 6667998 9999999988 665433222 2232 2 2567777778889999999999887654
No 252
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.38 E-value=9.9e-07 Score=63.63 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=52.2
Q ss_pred ecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCC------Cc--------eeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823 25 LRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRP------LT--------SYSIQDGSTSVARYTPTSELEYGTLLCWA 89 (365)
Q Consensus 25 ~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~------~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 89 (365)
..|++|+|.|.... .... .+.|++.....+... .. .+..-+.....|.|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~-~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIE-SITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEE-EEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 46999999998533 3344 999998753211110 00 01112233458999999999999999999
Q ss_pred EeCCCCCc-ccEEEEE
Q psy3823 90 RNEQGNQR-TPCTFHV 104 (365)
Q Consensus 90 ~~~~~~~~-~~~~l~V 104 (365)
....+... ..+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 88775543 6666665
No 253
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.38 E-value=3.6e-06 Score=62.77 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=51.1
Q ss_pred ceEEEEecCCcEEEEEEeCCCC-C--cceEEEEeCC---Cc--CC---CCC-----C-c--eeE--e--cCCeEEEEEEc
Q psy3823 19 QRIYGALRNEQVLVSCTVDANP-Q--AQYFTWAFNN---SG--TA---PRP-----L-T--SYS--I--QDGSTSVARYT 75 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~p-~--~~~v~W~~~~---~~--~l---~~~-----~-~--~~~--~--~~~~~~~l~i~ 75 (365)
+..+.+.+|+.++|.|.....+ . ...+.|++.. .. .+ ... . . .+. . ......+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4567789999999999943222 1 1279997521 11 00 000 0 0 011 0 11234579999
Q ss_pred cCCCCCCeEEEEEEEeCCCCCc--ccEEEE
Q psy3823 76 PTSELEYGTLLCWARNEQGNQR--TPCTFH 103 (365)
Q Consensus 76 ~~~~~d~G~Y~C~a~~~~~~~~--~~~~l~ 103 (365)
+++.+|+|.|+|.+.+...... ..+.|+
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 9999999999999998665422 444444
No 254
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.38 E-value=1.2e-06 Score=63.72 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=50.5
Q ss_pred ceecCCcEEEEEEEEecCCCCeeEEEeCCe-----EEee-------------CCCCceEEeeceEEEeeecCCCCeEEEE
Q psy3823 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGI-----TISN-------------NASAGRIITNQTLVLQSVTRHSGGLYAC 192 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~-----~l~~-------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 192 (365)
.+.+|++|.|.|.....+. ..+.|+++.. .+-. ...+.....+++|.|++++..|+|.|+|
T Consensus 9 ~~~~G~~V~L~v~~~p~~~-~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~ 87 (105)
T cd05774 9 QVAEGENVLLLVHNLPENL-LAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL 87 (105)
T ss_pred cccCCCCEEEEecCCCCCc-eEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence 4679999999996532222 2499999521 2210 1112234447899999999999999999
Q ss_pred EEEcCCCCCCcccEEE
Q psy3823 193 SAINSQGEGGSTPFDL 208 (365)
Q Consensus 193 ~~~~~~~~~~s~~~~l 208 (365)
.+.+.........+.|
T Consensus 88 ~v~~~~~~~~~~~v~l 103 (105)
T cd05774 88 QTITTNFQVEQATVHL 103 (105)
T ss_pred EEEeCCccEEEEEEEE
Confidence 9998775433233333
No 255
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.38 E-value=5.7e-06 Score=61.91 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=48.2
Q ss_pred ceEEEEecCCcEEEEEEeCC-CC--CcceEEEEeCCCc-----C-C--------C-CCCce--e--Ee--cCCeEEEEEE
Q psy3823 19 QRIYGALRNEQVLVSCTVDA-NP--QAQYFTWAFNNSG-----T-A--------P-RPLTS--Y--SI--QDGSTSVARY 74 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~-~p--~~~~v~W~~~~~~-----~-l--------~-~~~~~--~--~~--~~~~~~~l~i 74 (365)
+..+.+.+|++++|.|.... .+ ....+.|++.... . + . ..... + .. ......+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 55677889999999998432 22 1127999874321 0 0 0 00000 0 01 1123357999
Q ss_pred ccCCCCCCeEEEEEEEeCCCC
Q psy3823 75 TPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 75 ~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
.+++.+|+|.|.|.+.+....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999976554
No 256
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.37 E-value=4e-06 Score=60.97 Aligned_cols=78 Identities=12% Similarity=0.165 Sum_probs=49.8
Q ss_pred CceEEEEEEEeeeCCC--ceeEEEeCCCCCC----------C--C----CCceeEe---eCCCEEEEEEcCCCcccCeEE
Q psy3823 239 NEQVLVSCTVDANPQA--QYFTWAFNNSDTA----------P--R----PLTSYSI---QDGSTSVARYTPTSELEYGTL 297 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~--~~~~W~~~~~~~~----------~--~----~~~~~~~---~~~~~s~l~i~~v~~~d~G~Y 297 (365)
|++++|.|........ ..+.|++...... . . ..+..+. .......|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 6789999998532221 1588877542110 0 0 0111111 112345799999999999999
Q ss_pred EEEEEcCCccceecEEEEE
Q psy3823 298 LCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 298 ~C~a~n~~g~~~~~~~l~v 316 (365)
+|.+.|..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888777777665
No 257
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.36 E-value=3.8e-06 Score=60.12 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=45.2
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR 302 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~ 302 (365)
+..|++++|.|.... +... +.|+++|.......... ....+....+.|.+++.+|+|.|+|...
T Consensus 12 V~~G~~VTL~C~~~~-~~~~-f~l~k~g~~~~~~~~~~-~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 12 VPSGENVTLQCHSDI-RFDR-FILYKEGRSKPVLHLYE-KHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred cCCCCeEEEEEecCC-CCCE-EEEEECCCCCCceeccc-ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 789999999998754 4444 99999887432211000 0113345578999999999999999985
No 258
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.36 E-value=2.9e-06 Score=61.72 Aligned_cols=78 Identities=9% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCcEEEEEEeCCC--CCcceEEEEeCCCcC----------CCCCC----ceeEe-----cCCeEEEEEEccCCCCCCeEE
Q psy3823 27 NEQVLVSCTVDAN--PQAQYFTWAFNNSGT----------APRPL----TSYSI-----QDGSTSVARYTPTSELEYGTL 85 (365)
Q Consensus 27 G~~~~l~C~~~~~--p~~~~v~W~~~~~~~----------l~~~~----~~~~~-----~~~~~~~l~i~~~~~~d~G~Y 85 (365)
|++++|.|..... .....+.|++..... ..... ..+.. ......+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999985322 222378898865320 00000 00110 112345899999999999999
Q ss_pred EEEEEeCCCCCcccEEEEE
Q psy3823 86 LCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 86 ~C~a~~~~~~~~~~~~l~V 104 (365)
+|.+.+..+..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776667777776
No 259
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.35 E-value=7.7e-07 Score=60.69 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=40.6
Q ss_pred EEEEEEeCCCC-CcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 30 VLVSCTVDANP-QAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 30 ~~l~C~~~~~p-~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
++|.|.+.+.+ .+ .++|+ +... .............+.|.|.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~-~~~W~-~~~~---~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPP-SISWY-DSNP---SFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSE-EEEEE-TEEE---EEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCe-EEEEE-ecCC---ceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999987777 66 99999 1111 11111122334556899999999999999999986
No 260
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.35 E-value=5e-06 Score=61.78 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=48.4
Q ss_pred eEEEEecCCcEEEEEEeCCCC-C--cceEEEEe---------------CCCcCCCCC-C----ceeEe--cCCeEEEEEE
Q psy3823 20 RIYGALRNEQVLVSCTVDANP-Q--AQYFTWAF---------------NNSGTAPRP-L----TSYSI--QDGSTSVARY 74 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~~~~p-~--~~~v~W~~---------------~~~~~l~~~-~----~~~~~--~~~~~~~l~i 74 (365)
..+.+..|+.++|.|...+.. . ...++|.+ ++.. .... . +.... ......+|.|
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~-~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQP-YIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCce-ecccccCccCceEEeCCCCcCeeEEEE
Confidence 345678999999999944322 1 23999933 2222 1100 0 10111 1234458999
Q ss_pred ccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 75 TPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 75 ~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.+++.+|.|.|+|.+.|......
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcCC
Confidence 99999999999999998766433
No 261
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.35 E-value=4.3e-06 Score=60.52 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=49.0
Q ss_pred CcEEEEEEeCCCC--CcceEEEEeCCCcC--------------CCCCCceeEe---cCCeEEEEEEccCCCCCCeEEEEE
Q psy3823 28 EQVLVSCTVDANP--QAQYFTWAFNNSGT--------------APRPLTSYSI---QDGSTSVARYTPTSELEYGTLLCW 88 (365)
Q Consensus 28 ~~~~l~C~~~~~p--~~~~v~W~~~~~~~--------------l~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~ 88 (365)
++++|.|.....+ ....+.|+|..... .......+.. .......|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999954433 22289999965320 0000011111 111345899999999999999999
Q ss_pred EEe-CCCCCcccEEEEE
Q psy3823 89 ARN-EQGNQRTPCTFHV 104 (365)
Q Consensus 89 a~~-~~~~~~~~~~l~V 104 (365)
+.. ..|.....+.|+|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5566667777776
No 262
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.34 E-value=5.4e-06 Score=59.97 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=50.8
Q ss_pred ceEEEEEEEeeeC--CCceeEEEeCCCCCC--------------CCCCceeEeeCC---CEEEEEEcCCCcccCeEEEEE
Q psy3823 240 EQVLVSCTVDANP--QAQYFTWAFNNSDTA--------------PRPLTSYSIQDG---STSVARYTPTSELEYGTLLCW 300 (365)
Q Consensus 240 ~~~~l~C~~~~~p--~~~~~~W~~~~~~~~--------------~~~~~~~~~~~~---~~s~l~i~~v~~~d~G~Y~C~ 300 (365)
++++|.|.....+ ....+.|++...... ......+....+ ....|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987654 222599998653200 000011111111 345799999999999999999
Q ss_pred EEc-CCccceecEEEEE
Q psy3823 301 ARN-EQGSQRTPCTFHV 316 (365)
Q Consensus 301 a~n-~~g~~~~~~~l~v 316 (365)
+.+ +.|..+..+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 874 7788888888776
No 263
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.33 E-value=5.7e-06 Score=61.19 Aligned_cols=71 Identities=10% Similarity=0.134 Sum_probs=50.5
Q ss_pred eeecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------------CCCCceeEee--CCCEEEEEEcCCCcccCeEEEE
Q psy3823 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------------PRPLTSYSIQ--DGSTSVARYTPTSELEYGTLLC 299 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------------~~~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C 299 (365)
.+.+|++++|.|.+.+.+... +.|++...... ....+..+.. ......|.|.+++.+|+|.|.|
T Consensus 9 ~~~~G~~v~L~C~~~~~~~~~-v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C 87 (109)
T cd04983 9 SVQEGENVTLNCNYSTSTFYY-LFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC 87 (109)
T ss_pred EEcCCCCEEEEEEECCCCccE-EEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence 388999999999998776666 99998532111 0112222222 2356789999999999999999
Q ss_pred EEEcCCc
Q psy3823 300 WARNEQG 306 (365)
Q Consensus 300 ~a~n~~g 306 (365)
.+.+..+
T Consensus 88 ~~~~~~~ 94 (109)
T cd04983 88 ALSESGG 94 (109)
T ss_pred EEecCCC
Confidence 9997653
No 264
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.32 E-value=1e-06 Score=63.04 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=48.4
Q ss_pred CCcEEEEEEEEecCCCCeeEEEeCCeEEee--------C-------C-CCc-eEEeeceEEEeeecCCCCeEEEEEEEcC
Q psy3823 135 GVDIYFDCHIQANPPYKKLIWTHNGITISN--------N-------A-SAG-RIITNQTLVLQSVTRHSGGLYACSAINS 197 (365)
Q Consensus 135 g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~--------~-------~-~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 197 (365)
|++|+|.|...... ...+.|+++...... . . ..+ ....+.+|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~-~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPEN-LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCC-CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 78999999877633 344999985432110 0 0 011 1223578999999999999999999987
Q ss_pred CCCCCcccEEE
Q psy3823 198 QGEGGSTPFDL 208 (365)
Q Consensus 198 ~~~~~s~~~~l 208 (365)
.+......+.|
T Consensus 80 ~~~~~~~~~~l 90 (92)
T cd05741 80 NGVTENAKFFL 90 (92)
T ss_pred CCcEEEEEEEE
Confidence 76554444444
No 265
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.31 E-value=5.6e-06 Score=61.15 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=51.9
Q ss_pred cCCcEEEEEEeCCCCC---------cceEEEEeCCCc-CCC----CCCc--------eeEe-----cCCeEEEEEEccCC
Q psy3823 26 RNEQVLVSCTVDANPQ---------AQYFTWAFNNSG-TAP----RPLT--------SYSI-----QDGSTSVARYTPTS 78 (365)
Q Consensus 26 ~G~~~~l~C~~~~~p~---------~~~v~W~~~~~~-~l~----~~~~--------~~~~-----~~~~~~~l~i~~~~ 78 (365)
.|++++|+|.....+. ...+.|+|.... ... .... .+.. .......|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3899999999443331 238999996321 000 0000 0111 12344579999999
Q ss_pred CCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 79 ELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 79 ~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
.+|+|.|.|.+.......+..++|.|
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 99999999999987666668888887
No 266
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.31 E-value=7.6e-06 Score=64.42 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=61.1
Q ss_pred CCceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCC----CC--------Cce-eEecCCeEEEEEEccCCCCCC
Q psy3823 17 SQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAP----RP--------LTS-YSIQDGSTSVARYTPTSELEY 82 (365)
Q Consensus 17 ~~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~----~~--------~~~-~~~~~~~~~~l~i~~~~~~d~ 82 (365)
.+...+.|.+|++++|.|.. .+.... .+.|+|.... +. .+ .+. ....+...+.|.|.+++.+|+
T Consensus 20 s~~~~v~V~ege~VtLsCs~t~s~~~~-qVtWkK~~~~-IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDe 97 (189)
T PHA02987 20 SCFVKITVSEHVNVKISCNKTSSFNSI-LITWKKNNKT-IAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDN 97 (189)
T ss_pred ceeEEEEEcCCCCEEEEEecCCCCccc-eEEEEEcCCC-EEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhC
Confidence 34567889999999999995 344556 9999997443 21 00 011 122333556899999999999
Q ss_pred eEEEEEEEe-CCC-CCcccEEEEEE
Q psy3823 83 GTLLCWARN-EQG-NQRTPCTFHVV 105 (365)
Q Consensus 83 G~Y~C~a~~-~~~-~~~~~~~l~V~ 105 (365)
|.|+|.... +.| ..+.+..|+|.
T Consensus 98 GcY~C~F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 98 GCYTCIFNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred eEEEEEEEecCCCCCceeEEEEEEE
Confidence 999999864 555 56688888884
No 267
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.29 E-value=7.7e-06 Score=59.19 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=46.4
Q ss_pred EEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-CC-----------C-CCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823 23 GALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-AP-----------R-PLTSYSIQDGSTSVARYTPTSELEYGTLLC 87 (365)
Q Consensus 23 ~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l~-----------~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 87 (365)
.+.+|++++|.|...+. ... .+.||+..... .. . ..+.....+.....|+|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 47899999999996543 345 79999864320 10 0 011122233355689999999999999999
Q ss_pred EEEe
Q psy3823 88 WARN 91 (365)
Q Consensus 88 ~a~~ 91 (365)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9874
No 268
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.29 E-value=9e-06 Score=59.97 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=51.5
Q ss_pred cCceEEEEEEEeeeC------------CCceeEEEeCCCCCCC---------------CCCceeEee---CCCEEEEEEc
Q psy3823 238 RNEQVLVSCTVDANP------------QAQYFTWAFNNSDTAP---------------RPLTSYSIQ---DGSTSVARYT 287 (365)
Q Consensus 238 ~g~~~~l~C~~~~~p------------~~~~~~W~~~~~~~~~---------------~~~~~~~~~---~~~~s~l~i~ 287 (365)
.|++++|.|...... .+ .+.|++-...... ...+..+.. ......|.|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~-~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSP-RIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCC-EEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEe
Confidence 388999999997532 23 4999984211000 001111211 2245679999
Q ss_pred CCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 288 PTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 288 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
+++.+|+|.|+|.+.+.....+..+.|.|.
T Consensus 80 nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 80 ELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred ecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 999999999999999777766666666654
No 269
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.28 E-value=8.2e-06 Score=60.19 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=30.0
Q ss_pred eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 68 STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
....|+|.+++.+|+|.|.|.+.+........+.|.|
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence 4458999999999999999999966555556677766
No 270
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.27 E-value=6.9e-06 Score=61.49 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=50.1
Q ss_pred CceEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcC-C------CC-----------CCceeEecCC--eEEEEEEc
Q psy3823 18 QQRIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGT-A------PR-----------PLTSYSIQDG--STSVARYT 75 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~-l------~~-----------~~~~~~~~~~--~~~~l~i~ 75 (365)
.++.+.+.+|++++|.|...+ .+.. .+.||+..... . .. ..+.....+. ....|.|.
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 356778899999999999655 5666 89999953210 0 00 0111111222 45689999
Q ss_pred cCCCCCCeEEEEEEEe
Q psy3823 76 PTSELEYGTLLCWARN 91 (365)
Q Consensus 76 ~~~~~d~G~Y~C~a~~ 91 (365)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 271
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.23 E-value=8.9e-06 Score=60.26 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=48.0
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC---------------C--CCceeEeeC-CCEEEEEEcCCCcccCeEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP---------------R--PLTSYSIQD-GSTSVARYTPTSELEYGTL 297 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~---------------~--~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y 297 (365)
+.+|+.++|.|.+.+ +.+. +.|++......+ . ..+.....+ ...+.|.|.+++.+|+|.|
T Consensus 10 v~~G~~v~l~C~~~~-~~~~-v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y 87 (110)
T cd05899 10 KGRGQSVTLRCSQTS-GHDN-MYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVY 87 (110)
T ss_pred EcCCCcEEEEEEECC-CCCE-EEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEE
Confidence 889999999999987 5566 999986421111 0 111211222 2456799999999999999
Q ss_pred EEEEEcCC
Q psy3823 298 LCWARNEQ 305 (365)
Q Consensus 298 ~C~a~n~~ 305 (365)
.|.+.+..
T Consensus 88 ~Ca~~~~~ 95 (110)
T cd05899 88 LCASSLGG 95 (110)
T ss_pred EEEeeCCC
Confidence 99998754
No 272
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.22 E-value=1.1e-05 Score=58.15 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=31.3
Q ss_pred EEEEEcCCCcccCeEEEEEEEc-CCccceecEEEEE
Q psy3823 282 SVARYTPTSELEYGTLLCWARN-EQGSQRTPCTFHV 316 (365)
Q Consensus 282 s~l~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 316 (365)
..|.|.+++.+|.|.|+|.+.+ +.|+.+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 5699999999999999999999 7888888888876
No 273
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.22 E-value=1.3e-05 Score=57.77 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=31.9
Q ss_pred eEEEEEEccCCCCCCeEEEEEEEe-CCCCCcccEEEEE
Q psy3823 68 STSVARYTPTSELEYGTLLCWARN-EQGNQRTPCTFHV 104 (365)
Q Consensus 68 ~~~~l~i~~~~~~d~G~Y~C~a~~-~~~~~~~~~~l~V 104 (365)
...+|.|.+++.+|+|.|+|.+.+ +.|..+..+.|+|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 445899999999999999999998 6777668888887
No 274
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.21 E-value=7.2e-06 Score=59.17 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=51.1
Q ss_pred CceEEEEEEEeeeCCCceeEEEeCCCCCCCC----------------CCceeE-eeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPR----------------PLTSYS-IQDGSTSVARYTPTSELEYGTLLCWA 301 (365)
Q Consensus 239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~----------------~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a 301 (365)
|++++|.|..........+.|++........ ..+... ..+...+.|.|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7889999997644333359999853211000 000011 11224567999999999999999987
Q ss_pred E-cCCccceecEEEEE
Q psy3823 302 R-NEQGSQRTPCTFHV 316 (365)
Q Consensus 302 ~-n~~g~~~~~~~l~v 316 (365)
. .+.|..+..+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 67788777777776
No 275
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.21 E-value=1.9e-05 Score=58.34 Aligned_cols=80 Identities=10% Similarity=0.159 Sum_probs=53.5
Q ss_pred cCceEEEEEEEeeeCC---------CceeEEEeCCCCCCCC---------------CCceeEe---eCCCEEEEEEcCCC
Q psy3823 238 RNEQVLVSCTVDANPQ---------AQYFTWAFNNSDTAPR---------------PLTSYSI---QDGSTSVARYTPTS 290 (365)
Q Consensus 238 ~g~~~~l~C~~~~~p~---------~~~~~W~~~~~~~~~~---------------~~~~~~~---~~~~~s~l~i~~v~ 290 (365)
.|++++|.|.....+. ...+.|++........ ..+..+. .......|.|++++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3889999999976442 1259999852111000 0111111 12344679999999
Q ss_pred cccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 291 ELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 291 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
.+|+|.|.|.+.......+..+.|+|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999877777777777775
No 276
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.21 E-value=2e-05 Score=58.53 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=50.6
Q ss_pred eecCceEEEEEEEeeeCCC--c-eeEEEeCC---------------CCCCCCCC----ceeE--eeCCCEEEEEEcCCCc
Q psy3823 236 ALRNEQVLVSCTVDANPQA--Q-YFTWAFNN---------------SDTAPRPL----TSYS--IQDGSTSVARYTPTSE 291 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~--~-~~~W~~~~---------------~~~~~~~~----~~~~--~~~~~~s~l~i~~v~~ 291 (365)
+..|+.+.|.|........ . .+.|.+.. ........ +..+ ........|.|.+++.
T Consensus 10 a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~ 89 (116)
T cd05879 10 GTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDY 89 (116)
T ss_pred EEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCc
Confidence 8899999999999654311 1 69995421 11100001 1111 1112345699999999
Q ss_pred ccCeEEEEEEEcCCccceecEEEE
Q psy3823 292 LEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 292 ~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+|.|.|+|.+.|+.+.......+.
T Consensus 90 sD~G~Y~C~v~n~p~~~~~~~~~~ 113 (116)
T cd05879 90 TDNGTFTCDVKNPPDIVGKSSQVT 113 (116)
T ss_pred ccCEEEEEEEEcCCCcCCceeEEE
Confidence 999999999999887554444443
No 277
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.19 E-value=1.3e-05 Score=58.72 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=49.0
Q ss_pred eecCceEEEEEEEeee-CCCceeEEEeCCCCCCC----------------CCCceeEeeCC--CEEEEEEcCCCcccCeE
Q psy3823 236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAP----------------RPLTSYSIQDG--STSVARYTPTSELEYGT 296 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~----------------~~~~~~~~~~~--~~s~l~i~~v~~~d~G~ 296 (365)
+..|+.++|.|.+... +... +.|++....... ...+.....+. ....|.|.+++.+|+|.
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~-v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYY-IFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcce-EEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 6789999999999875 4554 999985431100 01111222222 46679999999999999
Q ss_pred EEEEEEcCCc
Q psy3823 297 LLCWARNEQG 306 (365)
Q Consensus 297 Y~C~a~n~~g 306 (365)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 278
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.17 E-value=2e-05 Score=56.48 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=49.3
Q ss_pred ceecCCcEEEEEEEEecCCCCe--eEEEeCCeEEeeCCCCc----eEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823 131 VLNEGVDIYFDCHIQANPPYKK--LIWTHNGITISNNASAG----RIITNQTLVLQSVTRHSGGLYACSAINSQGE 200 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~~~p~~~~--i~W~~~~~~l~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 200 (365)
.+.+|+.++|.|.+.+..+... |.||+++..+....... ......++.+.....+|...|+|+|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 4689999999999997554444 69999999886422111 1222456777766667777999999977653
No 279
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.17 E-value=1.5e-05 Score=58.65 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=46.9
Q ss_pred eecCceEEEEEEEeeeC-CCceeEEEeCCCCCCC-----------C--CCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823 236 ALRNEQVLVSCTVDANP-QAQYFTWAFNNSDTAP-----------R--PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p-~~~~~~W~~~~~~~~~-----------~--~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a 301 (365)
+.+|++++|.|.+.+.. ... +.|++....... . ..+.....+.....|.|++++.+|+|.|.|.+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~-~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~ 90 (106)
T cd04980 12 VSPGESATISCKASQSVSSNY-LAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQ 90 (106)
T ss_pred ECCCCCEEEEEEECCCCCCCc-EEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEE
Confidence 88999999999997654 455 999975321100 0 01122223345567999999999999999999
Q ss_pred EcC
Q psy3823 302 RNE 304 (365)
Q Consensus 302 ~n~ 304 (365)
.+.
T Consensus 91 ~~~ 93 (106)
T cd04980 91 YGT 93 (106)
T ss_pred eCC
Confidence 764
No 280
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.17 E-value=2e-05 Score=54.85 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=46.9
Q ss_pred EEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEe--cCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 30 VLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDG---STSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 30 ~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~--~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
++|.|. .+++|.. .++|+|++.. +......... .++ ..+.|.+.....++...|+|.|.+.....
T Consensus 2 ~~LtC~a~gf~P~~-~itW~kng~~-l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAA-DIRWFKNDKE-IKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCC-EEEEEECCEE-CcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 689999 5568886 9999999998 6554322211 222 34567777777888999999999876654
No 281
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.17 E-value=1.6e-05 Score=56.76 Aligned_cols=75 Identities=17% Similarity=0.350 Sum_probs=48.3
Q ss_pred CcEEEEEEEEecCCCCeeEEEeCC----eEEeeCC-----------CCceEEe-----eceEEEeeecCCCCeEEEEEEE
Q psy3823 136 VDIYFDCHIQANPPYKKLIWTHNG----ITISNNA-----------SAGRIIT-----NQTLVLQSVTRHSGGLYACSAI 195 (365)
Q Consensus 136 ~~v~l~C~~~~~p~~~~i~W~~~~----~~l~~~~-----------~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~ 195 (365)
++|+|.|.....+....++|.+.. ..+.... ..+.... +.+|.|.+++.+|+|.|.|++.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 368999998754555568998731 1221100 1122221 5689999999999999999987
Q ss_pred cCCCCCCcccEEEEE
Q psy3823 196 NSQGEGGSTPFDLNI 210 (365)
Q Consensus 196 ~~~~~~~s~~~~l~v 210 (365)
.......+.++.|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 654334436777766
No 282
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.16 E-value=0.00041 Score=62.29 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=93.9
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCC-CC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe
Q psy3823 70 SVARYTPTSELEYGTLLCWARNEQG-NQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146 (365)
Q Consensus 70 ~~l~i~~~~~~d~G~Y~C~a~~~~~-~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~ 146 (365)
-.|.|.+++..++|.|+=.+.+... .. ...++|.+ +.+|.+.+.+. .+.+|+.-.-.|.+..
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~---------yr~PsVsV~p~------PVL~Ge~YkAtC~vA~ 353 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS---------YKRPNITVIGD------PVLLGNPYAAYCKVNK 353 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE---------ecCCCccccCC------ccccCCCceEEEEeee
Confidence 3599999999999999855443222 21 25566666 67887777543 4669999999999985
Q ss_pred c-C-CCCeeEEEeCCeEEeeCCC--------CceEEeeceEEEeeecCCC--CeEEEEEEEcC-CCCCC---cccEEEEE
Q psy3823 147 N-P-PYKKLIWTHNGITISNNAS--------AGRIITNQTLVLQSVTRHS--GGLYACSAINS-QGEGG---STPFDLNI 210 (365)
Q Consensus 147 ~-p-~~~~i~W~~~~~~l~~~~~--------~~~~~~~~~l~i~~~~~~d--~G~Y~C~~~~~-~~~~~---s~~~~l~v 210 (365)
+ | ...+++|+.||.++..... .+.....++|.+......| .-..+|.+.-. .+... +....-.|
T Consensus 354 YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~V 433 (566)
T PHA03269 354 YYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDV 433 (566)
T ss_pred ecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCcc
Confidence 4 3 3445889999988863111 1111222334442211111 34569998633 22222 12222333
Q ss_pred eeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCC
Q psy3823 211 NKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSD 265 (365)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~ 265 (365)
. ..|.+. .....|+- .|.+.--|... .+.|+.++..
T Consensus 434 Y----------~~PtIS------m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 434 Y----------PFPNVS------IEIIDGHI---VCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred c----------cCCeEE------EEEeCCEE---EEecccccCCCceEEEEecCCC
Confidence 3 444433 21334443 38887776643 6999987764
No 283
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.15 E-value=1.1e-05 Score=59.91 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=49.9
Q ss_pred ceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCc----CCC--CCC------------ce--eEecCCeEEEEEEccC
Q psy3823 19 QRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSG----TAP--RPL------------TS--YSIQDGSTSVARYTPT 77 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~----~l~--~~~------------~~--~~~~~~~~~~l~i~~~ 77 (365)
+..+.+.+|+++.|.|... ..... .+.|++.... .+. ... .. .........+|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQS-SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGS-EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcc-eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 5678899999999999955 23444 9999995441 011 000 00 1112234568999999
Q ss_pred CCCCCeEEEEEEEeC
Q psy3823 78 SELEYGTLLCWARNE 92 (365)
Q Consensus 78 ~~~d~G~Y~C~a~~~ 92 (365)
+.+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999876
No 284
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.15 E-value=1.7e-05 Score=57.50 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=30.8
Q ss_pred eEEEEEEccCCCCCCeEEEEEEEe-CCCCCcccEEEEE
Q psy3823 68 STSVARYTPTSELEYGTLLCWARN-EQGNQRTPCTFHV 104 (365)
Q Consensus 68 ~~~~l~i~~~~~~d~G~Y~C~a~~-~~~~~~~~~~l~V 104 (365)
....|.|.+++.+|+|.|.|.+.+ +.|..+..+.|+|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 455799999999999999999986 6666667777776
No 285
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.14 E-value=9.2e-06 Score=58.56 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=50.6
Q ss_pred ecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCC------------Cc--eeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823 237 LRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRP------------LT--SYSIQDGSTSVARYTPTSELEYGTLLCWA 301 (365)
Q Consensus 237 ~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~------------~~--~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a 301 (365)
..|++++|.|.... .... .+.|++......... .. .++..+.....|.|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~-~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIE-SITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEE-EEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 36999999998754 2233 599997532111000 01 12223344466999999999999999999
Q ss_pred EcCCccc-eecEEEEE
Q psy3823 302 RNEQGSQ-RTPCTFHV 316 (365)
Q Consensus 302 ~n~~g~~-~~~~~l~v 316 (365)
.+..|.. +..+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9887654 44444443
No 286
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.13 E-value=2e-05 Score=54.09 Aligned_cols=74 Identities=9% Similarity=0.108 Sum_probs=52.0
Q ss_pred EEecCCcEEEEEEeCC--CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823 23 GALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC 100 (365)
Q Consensus 23 ~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~ 100 (365)
.+..|++++|.|...+ .|.+ .++|...+.. ..+. ......+|.+.+++..|+|.++|.+.......+..+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~-~i~w~~P~n~-~~~~------~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAF-KVEWRGPGNK-SKQI------LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCc-cEEEeCCCCc-ccee------ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 5788999999999543 5566 9999987765 2211 112223799999999999999999986643333445
Q ss_pred EEEE
Q psy3823 101 TFHV 104 (365)
Q Consensus 101 ~l~V 104 (365)
.+.|
T Consensus 82 ~V~V 85 (88)
T cd07694 82 DIKV 85 (88)
T ss_pred eEEE
Confidence 5554
No 287
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.13 E-value=1.6e-05 Score=56.78 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=50.4
Q ss_pred ceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----------------CceeE-eeCCCEEEEEEcCCCcccCeEEEEEE-
Q psy3823 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----------------LTSYS-IQDGSTSVARYTPTSELEYGTLLCWA- 301 (365)
Q Consensus 240 ~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----------------~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a- 301 (365)
++++|.|.....+....+.|.+......... .+..+ ........|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 3689999987543333699987532110000 01111 11223456999999999999999996
Q ss_pred EcCCccceecEEEEE
Q psy3823 302 RNEQGSQRTPCTFHV 316 (365)
Q Consensus 302 ~n~~g~~~~~~~l~v 316 (365)
..+.|+.+.+..|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 578899988888876
No 288
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.12 E-value=1.2e-05 Score=57.82 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=48.6
Q ss_pred cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823 238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGS 307 (365)
Q Consensus 238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~ 307 (365)
.|+.+.|.|.+.|+ |.+..+.|+++|........ ......++. .+.|.+......+.+.|+|.|.+....
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 57899999999997 54335999999875543332 122233444 345667666667999999999987654
No 289
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.12 E-value=2.3e-05 Score=58.61 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=48.5
Q ss_pred eeecCceEEEEEEEee--eCCCceeEEEeCCCCCCC------------------CCCceeEeeCC--CEEEEEEcCCCcc
Q psy3823 235 GALRNEQVLVSCTVDA--NPQAQYFTWAFNNSDTAP------------------RPLTSYSIQDG--STSVARYTPTSEL 292 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~--~p~~~~~~W~~~~~~~~~------------------~~~~~~~~~~~--~~s~l~i~~v~~~ 292 (365)
.+.+|+.++|.|.+.+ .+.+. +.|++....... ...+.....+. ....|.|.+++.+
T Consensus 9 ~~~~G~~v~l~C~~~~~~~~~~~-v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 87 (116)
T cd04982 9 TREESKSVTISCKVSGIDFSTTY-IHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE 87 (116)
T ss_pred EeCCCCCEEEEEEEeCCCccccE-EEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence 3788999999999977 56666 999985321110 01222223333 5678999999999
Q ss_pred cCeEEEEEEEcC
Q psy3823 293 EYGTLLCWARNE 304 (365)
Q Consensus 293 d~G~Y~C~a~n~ 304 (365)
|+|.|.|.+...
T Consensus 88 Dsg~Y~C~~~~~ 99 (116)
T cd04982 88 DSATYYCAYWES 99 (116)
T ss_pred HCEEEEEEEecC
Confidence 999999999753
No 290
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.11 E-value=1e-05 Score=58.17 Aligned_cols=70 Identities=21% Similarity=0.250 Sum_probs=49.7
Q ss_pred ecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCCCc---eeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 25 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLT---SYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 25 ~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~~~---~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
..|+.++|.|.+.+. |....++|++++.. +..... .....++ ..+.|.+.....+|.|.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~-~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKE-LTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEE-CCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 368999999996665 65448999999988 655442 1122333 2345777777777999999999987654
No 291
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.11 E-value=2.4e-05 Score=56.52 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=47.3
Q ss_pred eecCceEEEEEEEeee--CCCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823 236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCW 300 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~ 300 (365)
+.+|++++|.|...+. .... +.|++........ ..+.....++....|.|.+++.+|+|.|.|.
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~-i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNY-VNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCC-EEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 6789999999998764 3455 9998754321110 1122223344567799999999999999999
Q ss_pred EEcC
Q psy3823 301 ARNE 304 (365)
Q Consensus 301 a~n~ 304 (365)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 9754
No 292
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.10 E-value=3.4e-05 Score=56.80 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=47.2
Q ss_pred EEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeE-ecCC----eEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 23 GALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDG----STSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 23 ~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~----~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
.+..|+.++|.|. .+.+|....++|+||+.. +........ ..++ ..+.|.+.....++...|+|.+.+.....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~-~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNE-LSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQA 95 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEE-CcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCCC
Confidence 3456889999999 555676459999999998 654333222 1222 23446666544443446999999876544
No 293
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.10 E-value=3.1e-05 Score=55.98 Aligned_cols=70 Identities=11% Similarity=0.038 Sum_probs=47.6
Q ss_pred EEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCC-------------CCCceeE--ecCCeEEEEEEccCCCCCCeEE
Q psy3823 22 YGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAP-------------RPLTSYS--IQDGSTSVARYTPTSELEYGTL 85 (365)
Q Consensus 22 ~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~-------------~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y 85 (365)
+.+.+|++++|.|.... .+.. .+.|+|.... .. ....... ........|.|.+++.+|+|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~-~~~W~r~~~~-~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSY-EKYWCKWGSA-GCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCc-EeEeECCCCC-CCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEE
Confidence 46789999999998543 3455 8999997643 10 0011111 1223456899999999999999
Q ss_pred EEEEEeCC
Q psy3823 86 LCWARNEQ 93 (365)
Q Consensus 86 ~C~a~~~~ 93 (365)
.|.+....
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99887543
No 294
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.08 E-value=5.5e-05 Score=52.60 Aligned_cols=63 Identities=11% Similarity=0.236 Sum_probs=42.7
Q ss_pred EEEEEEEEec-CCCCeeEEEeCCeEEeeCCC------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823 138 IYFDCHIQAN-PPYKKLIWTHNGITISNNAS------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201 (365)
Q Consensus 138 v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 201 (365)
+.|.|.+.+. |.+ +|+|++++..+..... .+.....+.|.+.....++.+.|+|++.|.....
T Consensus 2 ~~L~C~~~~~~P~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAA-TIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCC-eEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 6899999865 665 5999999988753210 0111123345666666677889999999887653
No 295
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.06 E-value=6e-05 Score=52.41 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=44.0
Q ss_pred EEEEEEEEecCCCCeeEEEeCCeEEeeCCC-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823 138 IYFDCHIQANPPYKKLIWTHNGITISNNAS-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200 (365)
Q Consensus 138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 200 (365)
++|.|.+.|..|+..|+|++||..+..... .+.......|.+.....++...|+|++.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999997544466999999998753221 111222446777766677888999999987654
No 296
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.06 E-value=4.4e-05 Score=56.15 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=44.5
Q ss_pred EEecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCC---------------------CCcee--EecCCeEEEEEEccCC
Q psy3823 23 GALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPR---------------------PLTSY--SIQDGSTSVARYTPTS 78 (365)
Q Consensus 23 ~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~---------------------~~~~~--~~~~~~~~~l~i~~~~ 78 (365)
.+.+|++++|.|..... ... .+.|||-.....+. ..... .........|+|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~-~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENT-RIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCC-eEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 57899999999996443 334 89999864320000 00111 1122344579999999
Q ss_pred CCCCeEEEEEEE
Q psy3823 79 ELEYGTLLCWAR 90 (365)
Q Consensus 79 ~~d~G~Y~C~a~ 90 (365)
.+|+|.|.|...
T Consensus 81 ~~Dsg~YyCa~~ 92 (107)
T cd07700 81 PEDSGTYFCMTV 92 (107)
T ss_pred HHHCEEEEEeEc
Confidence 999999999975
No 297
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.05 E-value=3.7e-05 Score=55.72 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=48.9
Q ss_pred eEEEEEEEeeeCC--CceeEEEeCCCCCCC---------------C--CCceeEee--CCCEEEEEEcCCCcccCeEEEE
Q psy3823 241 QVLVSCTVDANPQ--AQYFTWAFNNSDTAP---------------R--PLTSYSIQ--DGSTSVARYTPTSELEYGTLLC 299 (365)
Q Consensus 241 ~~~l~C~~~~~p~--~~~~~W~~~~~~~~~---------------~--~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C 299 (365)
+++|.|.....+. ...+.|++....... . ..+..+.. ......|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 5889998864431 115999984321100 0 01122221 2234569999999999999999
Q ss_pred EEEc-CCccceecEEEEE
Q psy3823 300 WARN-EQGSQRTPCTFHV 316 (365)
Q Consensus 300 ~a~n-~~g~~~~~~~l~v 316 (365)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 7777777777766
No 298
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.04 E-value=8e-05 Score=51.86 Aligned_cols=63 Identities=11% Similarity=0.278 Sum_probs=43.3
Q ss_pred EEEEEEEEec-CCCCeeEEEeCCeEEeeCCC------C-ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823 138 IYFDCHIQAN-PPYKKLIWTHNGITISNNAS------A-GRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201 (365)
Q Consensus 138 v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~------~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 201 (365)
++|.|.+.+. |.+ .|+|++||..+..... . +.......|.+.....++...|+|++.+.....
T Consensus 2 ~~LtC~a~g~~P~~-~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAA-NIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCC-EeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 6899999975 655 6999999988754221 1 111123456666666788899999999987543
No 299
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.03 E-value=2.9e-05 Score=57.00 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=31.1
Q ss_pred eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 68 STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
...+|.|.+++.+|+|.|.|.+.......+..+.|.|
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence 4568999999999999999999986655557888887
No 300
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.03 E-value=6.7e-05 Score=55.93 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=46.5
Q ss_pred eeecCceEEEEEEEeeeCC-C--ceeEEEeC---CCCC---------C--CCCCce--eE----eeCCCEEEEEEcCCCc
Q psy3823 235 GALRNEQVLVSCTVDANPQ-A--QYFTWAFN---NSDT---------A--PRPLTS--YS----IQDGSTSVARYTPTSE 291 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~-~--~~~~W~~~---~~~~---------~--~~~~~~--~~----~~~~~~s~l~i~~v~~ 291 (365)
.+..|+.++|.|.....++ . ..+.|++. +... . .....+ +. ........|.|.+++.
T Consensus 9 ~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~ 88 (115)
T cd05880 9 EAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQP 88 (115)
T ss_pred EEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCCh
Confidence 3889999999999865432 1 14999752 1110 0 000010 11 1112345699999999
Q ss_pred ccCeEEEEEEEcCCcc
Q psy3823 292 LEYGTLLCWARNEQGS 307 (365)
Q Consensus 292 ~d~G~Y~C~a~n~~g~ 307 (365)
+|+|.|.|.+.|..+.
T Consensus 89 ~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 89 TDNGTYTCQVKNPPDV 104 (115)
T ss_pred hhCEEEEEEEEeCCCC
Confidence 9999999999987764
No 301
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.99 E-value=5.5e-05 Score=54.75 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=45.5
Q ss_pred eecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC--------CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823 132 LNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS--------AGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199 (365)
Q Consensus 132 ~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 199 (365)
...++.++|.|.+.| +|....++|++||..+..... .+.......|.+.....++...|+|.+.+...
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 446788999999997 566777999999998742211 11111123455555555567899999998754
No 302
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.98 E-value=6.6e-05 Score=53.62 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=47.4
Q ss_pred ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCc---eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLT---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
..|+.++|.|. .+..|....++|++++.. +..... .....+++.+......+..++...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~-~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQE-ETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCee-cCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 36899999999 555787779999999988 655421 12223444443333444556778999999987654
No 303
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.97 E-value=7.2e-05 Score=59.01 Aligned_cols=81 Identities=17% Similarity=0.309 Sum_probs=56.3
Q ss_pred cceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEee----------CCCCceEE-----eeceEEEeeecCCCCeEEEEE
Q psy3823 130 SVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISN----------NASAGRII-----TNQTLVLQSVTRHSGGLYACS 193 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~----------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~ 193 (365)
..+.+|++|+|.|... +...+. +.|.+....+.. .-..+... ...+|.|.+++.+|+|.|.|.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~q-VtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSIL-ITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccce-EEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 4678999999999985 433444 999985332211 00112222 356899999999999999999
Q ss_pred EEc-CCCCCCcccEEEEEe
Q psy3823 194 AIN-SQGEGGSTPFDLNIN 211 (365)
Q Consensus 194 ~~~-~~~~~~s~~~~l~v~ 211 (365)
+.- +.|...+....|+|.
T Consensus 104 F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEecCCCCCceeEEEEEEE
Confidence 864 455355577888887
No 304
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.96 E-value=0.0001 Score=55.05 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=46.0
Q ss_pred eecCceEEEEEEEeeeCC--C-ceeEEEeCCCCCCC---------------CCCce----eEe--eCCCEEEEEEcCCCc
Q psy3823 236 ALRNEQVLVSCTVDANPQ--A-QYFTWAFNNSDTAP---------------RPLTS----YSI--QDGSTSVARYTPTSE 291 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~--~-~~~~W~~~~~~~~~---------------~~~~~----~~~--~~~~~s~l~i~~v~~ 291 (365)
+..|+.++|.|....... . ..+.|++....... ....+ .+. .......|.|.+++.
T Consensus 10 v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 89 (116)
T cd05715 10 AVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQF 89 (116)
T ss_pred EEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCc
Confidence 789999999999864321 1 14999864221000 00011 111 112235699999999
Q ss_pred ccCeEEEEEEEcCCcc
Q psy3823 292 LEYGTLLCWARNEQGS 307 (365)
Q Consensus 292 ~d~G~Y~C~a~n~~g~ 307 (365)
+|+|.|.|.+.|..+.
T Consensus 90 ~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 90 TDNGTYTCDVKNPPDI 105 (116)
T ss_pred ccCEEEEEEEEeCCCC
Confidence 9999999999987664
No 305
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.96 E-value=8.7e-05 Score=54.65 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=44.1
Q ss_pred eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCC-C---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823 236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDG-S---TSVARYTPTSELEYGTLLCWARNEQGS 307 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~-~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~ 307 (365)
...|+.++|.|.+.++ |....+.|++||..............++ + .+.|.+.....+....|+|.+.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCC
Confidence 4568889999999885 5444599999987644322222222232 2 344656543332234599999986533
No 306
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.94 E-value=7.1e-05 Score=55.21 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=31.7
Q ss_pred EEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 69 TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 69 ~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
..+|.|.+++.+|+|.|+|.+..........+.|.|
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V 113 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV 113 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence 458999999999999999999988777778888887
No 307
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.93 E-value=0.0034 Score=55.47 Aligned_cols=165 Identities=13% Similarity=0.155 Sum_probs=93.9
Q ss_pred eEEEEEEccCCCCCCeEEEEEEEeCCCCCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE
Q psy3823 68 STSVARYTPTSELEYGTLLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145 (365)
Q Consensus 68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~ 145 (365)
....|.|.++...|+|.|+-...+.....- ..+.+.+. +.+|.+.+.+. .+.+|+.-.-.|.+.
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~--------~RPPsVsV~a~------PVL~Ge~YkAtC~vA 270 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC--------QRPASVDVLAP------PVLSGENYKASCIVR 270 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE--------ecCCCccccCC------ccccCCCceEEEEee
Confidence 344688999999999977554443322221 55556663 55777777553 466999999999998
Q ss_pred ec-C-CCCeeEEEeCCeEEeeCCCCceEE----------eeceEEEeeecCCCCeEEEEEEEcCCC-CCC--cccEEEEE
Q psy3823 146 AN-P-PYKKLIWTHNGITISNNASAGRII----------TNQTLVLQSVTRHSGGLYACSAINSQG-EGG--STPFDLNI 210 (365)
Q Consensus 146 ~~-p-~~~~i~W~~~~~~l~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~--s~~~~l~v 210 (365)
.+ | ...+++|+.||.++.......... .-++|.+.+...+..-..+|.+.-..+ ... ++...-.|
T Consensus 271 nYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~V 350 (490)
T PHA03271 271 HFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTV 350 (490)
T ss_pred eecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCcc
Confidence 54 3 344588999998875433221111 122343433322333478999864333 111 12222223
Q ss_pred eeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCC
Q psy3823 211 NKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265 (365)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~ 265 (365)
. .+|.+. .....|+-+ |.+.--|....+.|+.++..
T Consensus 351 Y----------~~P~IS------v~FedG~AV---CtA~CVP~gV~lrWlVgD~p 386 (490)
T PHA03271 351 Y----------HHPRIS------LAFKDGYAI---CTIECVPSGITVRWLVHDEP 386 (490)
T ss_pred c----------cCCeEE------EEEeCCEEE---EeccccCCCcEEEEEecCCC
Confidence 2 333332 223344433 88876665447999987653
No 308
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.93 E-value=7.7e-05 Score=55.77 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=48.7
Q ss_pred ceEEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCcC-C----------CCC--CceeEe--cCCeEEEEEEccCCCCCC
Q psy3823 19 QRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGT-A----------PRP--LTSYSI--QDGSTSVARYTPTSELEY 82 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~-l----------~~~--~~~~~~--~~~~~~~l~i~~~~~~d~ 82 (365)
+..+.+.+|++++|.|..... ... .+.|||..... + ... .+.... .......|.|.+++.+|+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~-~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNY-YIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCce-EEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 456778999999999995432 344 89999853210 0 000 111111 223456899999999999
Q ss_pred eEEEEEEEeC
Q psy3823 83 GTLLCWARNE 92 (365)
Q Consensus 83 G~Y~C~a~~~ 92 (365)
|.|.|.+...
T Consensus 85 g~Y~C~~~~~ 94 (116)
T cd07706 85 AKYFCALSTL 94 (116)
T ss_pred EEEEEEEECC
Confidence 9999998853
No 309
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.92 E-value=0.00011 Score=52.46 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=43.3
Q ss_pred CceEEEEEEEeee-CCCceeEEEeCCCCCCCCC--CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823 239 NEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP--LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 306 (365)
Q Consensus 239 g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g 306 (365)
++.++|.|.+.|+ |++..+.|.++|....... .......++..+......+...+...|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999996 5543699999985221111 122223445544434444555688999999987654
No 310
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.91 E-value=0.0022 Score=57.57 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=93.3
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-C
Q psy3823 70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-P 148 (365)
Q Consensus 70 ~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p 148 (365)
-.|.|..++..++|.|+=...+..+.......++|.- +.+|.+.+.+. .+.+|+...-.|.+..+ |
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~-------yr~Psvsv~~~------PvL~Ge~y~A~C~aa~YYP 264 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST-------YNAPLVDLSVH------PSLKGENYRAVCVVASYFP 264 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE-------ecCCcccccCC------ccccCCCceEEEEeeeecC
Confidence 3599999999999999855445444333333444321 66888777553 46699999999999854 3
Q ss_pred -CCCeeEEEeCCeEEeeCCCCc--eE-------EeeceEEEeeec-CCCCeEEEEEEEcC-CCCCCc---ccEEEEEeee
Q psy3823 149 -PYKKLIWTHNGITISNNASAG--RI-------ITNQTLVLQSVT-RHSGGLYACSAINS-QGEGGS---TPFDLNINKM 213 (365)
Q Consensus 149 -~~~~i~W~~~~~~l~~~~~~~--~~-------~~~~~l~i~~~~-~~d~G~Y~C~~~~~-~~~~~s---~~~~l~v~~~ 213 (365)
...++.|+.||.++....... .. ...++|.+.... ....-..+|.+.-. .....+ +...-.|.
T Consensus 265 p~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy-- 342 (486)
T PHA03273 265 HSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVF-- 342 (486)
T ss_pred CCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccc--
Confidence 344588999999887212111 11 112334333321 23335789998533 222221 22223333
Q ss_pred eecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC-CceeEEEeCCC
Q psy3823 214 VNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ-AQYFTWAFNNS 264 (365)
Q Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~W~~~~~ 264 (365)
.+|.+. .....|+- .|.+.--|. ...+.|+.++.
T Consensus 343 --------~~P~Is------~~F~~G~A---VCtA~CVP~egV~l~W~v~D~ 377 (486)
T PHA03273 343 --------VAPTVS------VTVEDGDA---VCTAKCVPSTGVFVSWSVNDH 377 (486)
T ss_pred --------cCCeEE------EEEeCCEE---EEecccccCCCeeEEEEccCC
Confidence 444433 21333433 388877776 23599998763
No 311
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.89 E-value=0.00026 Score=53.18 Aligned_cols=74 Identities=7% Similarity=-0.012 Sum_probs=47.2
Q ss_pred ceEEEEecCCcEEEEEEeCCC-----CCcceEEEEeCCCcC----C---CC-CC--------ceeE--ecCCeEEEEEEc
Q psy3823 19 QRIYGALRNEQVLVSCTVDAN-----PQAQYFTWAFNNSGT----A---PR-PL--------TSYS--IQDGSTSVARYT 75 (365)
Q Consensus 19 ~~~~~v~~G~~~~l~C~~~~~-----p~~~~v~W~~~~~~~----l---~~-~~--------~~~~--~~~~~~~~l~i~ 75 (365)
+..+.+.+|+.++|.|..... +....+.||+..... + .. .. +... ........|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 455788999999999974311 112279999865320 0 00 00 0011 112344579999
Q ss_pred cCCCCCCeEEEEEEEeC
Q psy3823 76 PTSELEYGTLLCWARNE 92 (365)
Q Consensus 76 ~~~~~d~G~Y~C~a~~~ 92 (365)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999988653
No 312
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.88 E-value=0.00014 Score=49.52 Aligned_cols=63 Identities=22% Similarity=0.444 Sum_probs=41.2
Q ss_pred cEEEEEEEEec-CCCCeeEEEeCCeEEeeCC--------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823 137 DIYFDCHIQAN-PPYKKLIWTHNGITISNNA--------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199 (365)
Q Consensus 137 ~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 199 (365)
.++|.|.+.|. |+..+++|++||.++.... ..+.......|.+.....++...|+|++.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 36899999984 6656799999998743211 111111234455655566788899999987653
No 313
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.87 E-value=0.00017 Score=52.12 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=47.1
Q ss_pred eecCceEEEEEEEeee-CCCceeEEEeCCCCCC------------CCCCceeE--eeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823 236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTA------------PRPLTSYS--IQDGSTSVARYTPTSELEYGTLLCW 300 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C~ 300 (365)
+.+|++++|.|..... .... +.|++...... ....+..+ ........|.|.+++.+|+|.|.|.
T Consensus 4 ~~~G~~vtl~C~~~~~~~~~~-~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRSYE-KYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEeCCeEEEEeeCCCCCCCcE-eEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 7889999999998653 3444 99998643210 01112222 2224567899999999999999999
Q ss_pred EEcCC
Q psy3823 301 ARNEQ 305 (365)
Q Consensus 301 a~n~~ 305 (365)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 98754
No 314
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.85 E-value=0.00014 Score=53.45 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=45.4
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC---------------------CCceeE--eeCCCEEEEEEcCCCcc
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR---------------------PLTSYS--IQDGSTSVARYTPTSEL 292 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~---------------------~~~~~~--~~~~~~s~l~i~~v~~~ 292 (365)
+.+|+.++|.|...+......+.|++........ ..+... ..+.....|.|.+++.+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 82 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE 82 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH
Confidence 7789999999998754322249999854321000 011211 22344567999999999
Q ss_pred cCeEEEEEEEc
Q psy3823 293 EYGTLLCWARN 303 (365)
Q Consensus 293 d~G~Y~C~a~n 303 (365)
|+|.|.|...+
T Consensus 83 Dsg~YyCa~~~ 93 (107)
T cd07700 83 DSGTYFCMTVG 93 (107)
T ss_pred HCEEEEEeEcC
Confidence 99999999864
No 315
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.84 E-value=0.00031 Score=52.46 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=46.2
Q ss_pred eecCceEEEEEEEeee-CCCceeEEEeCCCCCC-----------C-C-CCceeEe--eCCCEEEEEEcCCCcccCeEEEE
Q psy3823 236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTA-----------P-R-PLTSYSI--QDGSTSVARYTPTSELEYGTLLC 299 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~-----------~-~-~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C 299 (365)
+..|+.++|.|..... ... .+.|++...... . . ..+.... .......|.|.+++.+|+|.|.|
T Consensus 11 ~~~G~~v~L~C~~~~~~~~~-~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C 89 (116)
T cd07706 11 VQVGEEVTLNCRYETSWTNY-YIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFC 89 (116)
T ss_pred EcCCCCEEEEEEEeCCCCce-EEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEE
Confidence 8899999999998753 334 499998432110 0 0 1122222 23446779999999999999999
Q ss_pred EEEcC
Q psy3823 300 WARNE 304 (365)
Q Consensus 300 ~a~n~ 304 (365)
.+...
T Consensus 90 ~~~~~ 94 (116)
T cd07706 90 ALSTL 94 (116)
T ss_pred EEECC
Confidence 99853
No 316
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.83 E-value=0.0002 Score=52.62 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 280 STSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 280 ~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
....|.|.+++.+|+|.|.|.+.......+..+.|+|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 35679999999999999999999977667777777765
No 317
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.82 E-value=8.1e-05 Score=55.20 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=51.0
Q ss_pred eeeecCceEEEEEEEe-eeCCCceeEEEeCCCCCCCC------------------CCceeEe--eCCCEEEEEEcCCCcc
Q psy3823 234 YGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPR------------------PLTSYSI--QDGSTSVARYTPTSEL 292 (365)
Q Consensus 234 ~~~~~g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~------------------~~~~~~~--~~~~~s~l~i~~v~~~ 292 (365)
..+..|+.+.|.|... ..... .+.|++........ ..+..+. .......|.|.+++.+
T Consensus 11 v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 11 VTVQEGESVTLPCSYSSSSNQS-SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEETTSEEEEEEEEESSSSGS-EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred EEEecCCCEEEEEEEeCCCCcc-eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 3388999999999998 33334 59999844311000 0000111 1223567999999999
Q ss_pred cCeEEEEEEEcC-CccceecEEEE
Q psy3823 293 EYGTLLCWARNE-QGSQRTPCTFH 315 (365)
Q Consensus 293 d~G~Y~C~a~n~-~g~~~~~~~l~ 315 (365)
|+|.|.|.+... .........|.
T Consensus 90 DsG~Y~C~v~~~~~~~~~~~~~L~ 113 (114)
T PF07686_consen 90 DSGTYFCQVSTSNEQSFGNGTKLT 113 (114)
T ss_dssp GEEEEEEEEEESSEEEEEEEEEEE
T ss_pred cCEEEEEEEEECCCCEECCcEEEE
Confidence 999999999987 22333444443
No 318
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.82 E-value=0.00018 Score=49.42 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=51.2
Q ss_pred eecCceEEEEEEEeeeCCC--ceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823 236 ALRNEQVLVSCTVDANPQA--QYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 313 (365)
+..|++++|+|.....+.| . +.|...++.... ........|.+..+...|+|..+|.+.-..-.....+.
T Consensus 11 lL~G~sLtLtl~~~s~s~p~~~-i~w~~P~n~~~~-------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 11 VLSGTNLTLTLHGSSNSLPAFK-VEWRGPGNKSKQ-------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred eecCCcEEEEEecCCCCCCCcc-EEEeCCCCccce-------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 7889999999999654444 6 999876653211 11122335899999999999999999765444445555
Q ss_pred EEEE
Q psy3823 314 FHVV 317 (365)
Q Consensus 314 l~v~ 317 (365)
+.|.
T Consensus 83 V~Vl 86 (88)
T cd07694 83 IKVL 86 (88)
T ss_pred EEEE
Confidence 5443
No 319
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.80 E-value=0.00021 Score=51.81 Aligned_cols=68 Identities=15% Similarity=0.296 Sum_probs=44.2
Q ss_pred eecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC-----------CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823 132 LNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS-----------AGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199 (365)
Q Consensus 132 ~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 199 (365)
+..|..++|.|.+.| +|....+.|++||.++..... .+.......|.+..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 345788999999998 566666899999988753210 01111133455544444566789999998754
No 320
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.79 E-value=0.00056 Score=50.48 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=32.5
Q ss_pred EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823 281 TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317 (365)
Q Consensus 281 ~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 317 (365)
...|.|.+++.+|+|.|+|.+.+.....+..+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 4679999999999999999999988888888888775
No 321
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.78 E-value=0.00017 Score=51.48 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=44.7
Q ss_pred ceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----------------CceeEe-eCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----------------LTSYSI-QDGSTSVARYTPTSELEYGTLLCWAR 302 (365)
Q Consensus 240 ~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----------------~~~~~~-~~~~~s~l~i~~v~~~d~G~Y~C~a~ 302 (365)
+.++|.|..........+.|.+......... .+..+. .......|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4688999885422222588988542110000 011111 11123569999999999999999886
Q ss_pred c-CCccceecEEE
Q psy3823 303 N-EQGSQRTPCTF 314 (365)
Q Consensus 303 n-~~g~~~~~~~l 314 (365)
. +.|..++.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 57777665443
No 322
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.77 E-value=0.00024 Score=50.69 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=46.4
Q ss_pred ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCC--CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823 237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP--LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307 (365)
Q Consensus 237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~ 307 (365)
..|+..+|.|.+.|+ |....+.|+++|....... .......+++.+......+..++...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 457889999999985 5554799999987543321 1222244455544444445556777999999887543
No 323
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.74 E-value=0.00023 Score=50.77 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCC---ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 27 NEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPL---TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 27 G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
|+.++|.|.+.+ .|....++|++++.. +.... ......++.........+...+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~-~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGED-SVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEE-CcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 788999999655 576669999999853 32221 112223444333334444455889999999886543
No 324
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.74 E-value=0.00023 Score=51.94 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=45.4
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCC--CCC----------C---------CCceeEeeCCCEEEEEEcCCCcccC
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSD--TAP----------R---------PLTSYSIQDGSTSVARYTPTSELEY 294 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~--~~~----------~---------~~~~~~~~~~~~s~l~i~~v~~~d~ 294 (365)
+..|+.++|.|......... +.|++.... ... . ..+.....+.....|.|++++.+|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~-v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTG-CSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCCc-EEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 67899999999986543444 999986432 110 0 0011112334567799999999999
Q ss_pred eEEEEEEEc
Q psy3823 295 GTLLCWARN 303 (365)
Q Consensus 295 G~Y~C~a~n 303 (365)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999864
No 325
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.72 E-value=0.0003 Score=52.01 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=50.3
Q ss_pred CCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCC---------ceEEeeceEEEeeecCC
Q psy3823 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASA---------GRIITNQTLVLQSVTRH 185 (365)
Q Consensus 116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~---------~~~~~~~~l~i~~~~~~ 185 (365)
+|.+.+-+.+ ...+.+++.++|.|.+.+ +|....++|++||..+...... +.....+.|.+......
T Consensus 2 ~P~V~v~~ps---~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~ 78 (115)
T cd05769 2 PPTVAIFPPS---EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWF 78 (115)
T ss_pred CCEEEEECcC---hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhc
Confidence 4555554432 123446678999999998 5665679999999887532110 11112344555554443
Q ss_pred C-CeEEEEEEEcCCCC
Q psy3823 186 S-GGLYACSAINSQGE 200 (365)
Q Consensus 186 d-~G~Y~C~~~~~~~~ 200 (365)
+ ...|+|.+.+....
T Consensus 79 ~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 79 NPRNTFTCIVQFYGGT 94 (115)
T ss_pred cCCCeEEEEEEEeCCc
Confidence 3 67899999987553
No 326
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.72 E-value=0.00022 Score=52.14 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=44.1
Q ss_pred EEecCCcEEEEEEeCCCCCcceEEEEeCCCc---CC------CCC-C---------ceeE--ecCCeEEEEEEccCCCCC
Q psy3823 23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSG---TA------PRP-L---------TSYS--IQDGSTSVARYTPTSELE 81 (365)
Q Consensus 23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~---~l------~~~-~---------~~~~--~~~~~~~~l~i~~~~~~d 81 (365)
.+.+|++++|.|........ .+.||+.... .. ... . ..+. ........|.|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 36789999999996443344 7999986431 01 000 0 0011 122355679999999999
Q ss_pred CeEEEEEEE
Q psy3823 82 YGTLLCWAR 90 (365)
Q Consensus 82 ~G~Y~C~a~ 90 (365)
+|.|.|.+.
T Consensus 81 sgtY~Ca~~ 89 (104)
T cd05720 81 EGYYFCSVA 89 (104)
T ss_pred CEEEEEEEc
Confidence 999999876
No 327
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.71 E-value=0.00028 Score=50.21 Aligned_cols=68 Identities=22% Similarity=0.168 Sum_probs=41.8
Q ss_pred cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823 238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 305 (365)
Q Consensus 238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~ 305 (365)
.++..+|.|.+.|+ |....+.|.++|........ ......+++........+...+...|+|.+....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 45668999999985 65557999999875432211 1122344544332223334456678999998753
No 328
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.71 E-value=0.00017 Score=47.67 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=44.3
Q ss_pred EEEEEEeCCCCCcceEEEEeCCCcCCCCCCce----eEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823 30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS----YSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 93 (365)
Q Consensus 30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~ 93 (365)
+.|.|...+.+.. .+.|++++.. ....... ..........|.+.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~-~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPP-TITWLKNGKP-LPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCC-cEEEEECCEE-CCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4789997666666 9999998876 4333211 11123455579999999999999999998765
No 329
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.69 E-value=0.00045 Score=49.13 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=53.1
Q ss_pred eEEEEecCCcEEE-EEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 20 RIYGALRNEQVLV-SCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 20 ~~~~v~~G~~~~l-~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
....+.+|+.+.+ .|. .++.|.+ .++|+.+... ... .......++ -.+.+.+.+...+|...++|.+.+...
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa-~IsW~~~~~G-~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAA-DVTWETNVYG-TSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCC-EeEEeCCCCC-ccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 3456789999999 999 8899999 9999987544 321 111222333 234677777788899999999998765
Q ss_pred CCc
Q psy3823 95 NQR 97 (365)
Q Consensus 95 ~~~ 97 (365)
...
T Consensus 86 ~~~ 88 (97)
T cd07704 86 QQD 88 (97)
T ss_pred CCC
Confidence 443
No 330
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.69 E-value=0.00047 Score=49.10 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=52.3
Q ss_pred ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCe---EEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823 25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGNQRTPC 100 (365)
Q Consensus 25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~ 100 (365)
.....+.+.|. .+++|.+ .++|+++... ... .......+++ .+.|.+.+...+|...|+|.+.+........+
T Consensus 13 ~~~~~~va~C~s~~gkPaa-~IsW~~~~~g-~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 13 GTIPVPVAKCVSANGRPPA-RISWSSTLGG-NAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred CCCccEEEEEEcCCCCCCc-EEEEEcCCCC-Cee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 44567889998 7799999 9999998433 111 1111223333 45788888888899999999999876655444
Q ss_pred EEE
Q psy3823 101 TFH 103 (365)
Q Consensus 101 ~l~ 103 (365)
.++
T Consensus 90 ~~~ 92 (95)
T cd07703 90 PVT 92 (95)
T ss_pred EEE
Confidence 444
No 331
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.68 E-value=0.00036 Score=49.86 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=40.0
Q ss_pred CcEEEEEEEEecCCCCeeEEEeCCe----EEee-----------CCCCceEE-----eeceEEEeeecCCCCeEEEEEEE
Q psy3823 136 VDIYFDCHIQANPPYKKLIWTHNGI----TISN-----------NASAGRII-----TNQTLVLQSVTRHSGGLYACSAI 195 (365)
Q Consensus 136 ~~v~l~C~~~~~p~~~~i~W~~~~~----~l~~-----------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~ 195 (365)
+.++|.|..........+.|.+... .+.. .-..+... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4678888876433344477887321 1211 00011221 24789999999999999999997
Q ss_pred cC-CCC
Q psy3823 196 NS-QGE 200 (365)
Q Consensus 196 ~~-~~~ 200 (365)
.. .|.
T Consensus 81 t~P~g~ 86 (96)
T cd05889 81 TYPQGS 86 (96)
T ss_pred eCCCCC
Confidence 54 443
No 332
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.67 E-value=0.00031 Score=49.83 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=46.0
Q ss_pred ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823 237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 305 (365)
Q Consensus 237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~ 305 (365)
..|+..+|.|.+.|+ |....+.|.+||.... .... .....+++........+..++...|+|.+....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 346667999999985 5555799999997544 3221 223456665555555566677888999998853
No 333
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.67 E-value=0.0004 Score=49.28 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=46.9
Q ss_pred ecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 25 LRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 25 ~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
..|+..+|.|.+ +.+|....++|++||.. +. +... ....+++........+...+...|.|.+.+....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~-~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l~ 85 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVK-IP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSMS 85 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEE-CC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCCC
Confidence 346678999994 44777779999999988 66 3221 2234554444444455667888999999986533
No 334
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.66 E-value=0.00015 Score=52.43 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=44.7
Q ss_pred eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCEE---EEEEcCCCcccCeEEEEEEEcCCc
Q psy3823 236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQG 306 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~s---~l~i~~v~~~d~G~Y~C~a~n~~g 306 (365)
...++.++|.|.+.|+ |....+.|+++|........ ......+++.+ .|.+..-...+...|+|.|.+..-
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 4456789999999885 54447999999875432211 11223355543 344544444457799999988654
No 335
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.62 E-value=0.00051 Score=46.77 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=42.4
Q ss_pred cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDG---STSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
.++|.|. .+..|....++|++++.. +..+... ....++ ..+.|.+.....++...|+|.+.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~-~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQE-VTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEE-CCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 3689999 445577559999999986 4433221 112333 233566666677788999999987653
No 336
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.58 E-value=0.00029 Score=46.54 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=43.8
Q ss_pred EEEEEEEeeeCCCceeEEEeCCCCCCCCCCc---eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLT---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 305 (365)
Q Consensus 242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~ 305 (365)
+.|.|.+.+.+... +.|++++......... ...........|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPT-ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCc-EEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899998855665 9999977543332211 111223345679999999999999999998876
No 337
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.58 E-value=0.00052 Score=49.00 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=48.2
Q ss_pred ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823 25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGNQR 97 (365)
Q Consensus 25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~ 97 (365)
.......+.|. .+++|.+ .|+|+++... ... .......++ ..+.|.+.....+|...|+|.+.+......
T Consensus 13 ~~~~~~va~C~s~~gkP~a-~ItW~~~~~~-~~~-~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~ 86 (95)
T cd05719 13 GGEPVTVATCVSANGKPPA-TISWETTLGG-EAE-TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP 86 (95)
T ss_pred CCCccEEEEEECCCCcCCC-EEEEEeCCCC-cce-eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 34567788899 6899999 9999998322 111 111112233 345788888888899999999998776554
No 338
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.58 E-value=0.00043 Score=49.28 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=42.9
Q ss_pred cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
.|+..+|.|. .+.+|....++|.+||.. +..+... ....+++........+..++...|+|.+.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~-~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVP-VTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeE-ccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCCC
Confidence 3666899999 445787779999999988 6553221 122334332222223334566799999998653
No 339
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.54 E-value=0.00029 Score=49.11 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=47.0
Q ss_pred cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee--E-ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY--S-IQDGSTSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~--~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
.++.++|.|. .+..|....|+|++++.. +....... . ..+++.+......+.+.+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~-~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKE-VTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEE-ETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccce-eeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence 3899999999 555776669999999987 65543321 1 24554444333344467777999999987644
No 340
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.53 E-value=0.00046 Score=51.59 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=46.6
Q ss_pred CceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-C-------CC-C---------CceeEe--cCCeEEEEEEc
Q psy3823 18 QQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-A-------PR-P---------LTSYSI--QDGSTSVARYT 75 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l-------~~-~---------~~~~~~--~~~~~~~l~i~ 75 (365)
++....+.+|++++|.|.....- .. .+.|||-.... . .. . .+.... .......|.|.
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~-~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSY-GVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccc-eEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 45567889999999999843221 34 79999854310 0 00 0 000111 11233469999
Q ss_pred cCCCCCCeEEEEEEEe
Q psy3823 76 PTSELEYGTLLCWARN 91 (365)
Q Consensus 76 ~~~~~d~G~Y~C~a~~ 91 (365)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998764
No 341
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.52 E-value=0.00074 Score=48.12 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=43.4
Q ss_pred cCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCC-C-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823 134 EGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNA-S-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200 (365)
Q Consensus 134 ~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~-~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 200 (365)
.++.++|.|.+.| +|....++|++||..+.... . .........|.+......+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4566999999998 67667799999998863211 1 111111234545544445678999999987643
No 342
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.50 E-value=0.00034 Score=48.72 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=45.4
Q ss_pred ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeE--eeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823 237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYS--IQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307 (365)
Q Consensus 237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~ 307 (365)
..++.++|.|.+.++ |....+.|+++|............ ..++..+......+...+...|+|.+.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence 348899999999885 545479999988754332222111 34555444333344466677899999876543
No 343
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.50 E-value=0.00029 Score=49.81 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=47.3
Q ss_pred CCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee-E-ecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 27 NEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY-S-IQDG---STSVARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 27 G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~-~-~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
|+.+.|.|. .+++|.+ .++|+.++.. +....... . ..++ ..+.|.+.....++...++|.|.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~-~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPP-QITWYLDGGP-VVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-E-EEEEEETTCE-ECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCe-EEEEEECCCc-eeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 679999998 8889999 9999999987 51111111 1 1222 3457888877778889999999987643
No 344
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.48 E-value=0.00052 Score=49.10 Aligned_cols=70 Identities=23% Similarity=0.340 Sum_probs=43.7
Q ss_pred eecCceEEEEEEEeee--CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCc---ccCeEEEEEEEcCCc
Q psy3823 236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSE---LEYGTLLCWARNEQG 306 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~---~d~G~Y~C~a~n~~g 306 (365)
...+..++|.|.+.++ |.+..+.|.++|.... .........+++.+......+.. .....|+|.|.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 4467889999999984 4444799999987421 11111224456554444444444 334579999998754
No 345
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.47 E-value=0.0014 Score=49.21 Aligned_cols=70 Identities=9% Similarity=0.018 Sum_probs=45.2
Q ss_pred eeecCceEEEEEEEeeeC-----CCceeEEEeCCCCC---CC----C---------CCceeE--eeCCCEEEEEEcCCCc
Q psy3823 235 GALRNEQVLVSCTVDANP-----QAQYFTWAFNNSDT---AP----R---------PLTSYS--IQDGSTSVARYTPTSE 291 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p-----~~~~~~W~~~~~~~---~~----~---------~~~~~~--~~~~~~s~l~i~~v~~ 291 (365)
.+..|+.++|.|...... ....+.|++..... .. . ..+..+ ......+.|.|.+++.
T Consensus 10 ~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~ 89 (119)
T cd05712 10 SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQP 89 (119)
T ss_pred EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCCh
Confidence 388999999999875322 11248999864321 00 0 011111 1234456799999999
Q ss_pred ccCeEEEEEEEcC
Q psy3823 292 LEYGTLLCWARNE 304 (365)
Q Consensus 292 ~d~G~Y~C~a~n~ 304 (365)
+|+|.|.|.+...
T Consensus 90 ~Dsg~Y~C~~~~~ 102 (119)
T cd05712 90 EDSGKYFFRVELG 102 (119)
T ss_pred hhCeEEEEEEEcC
Confidence 9999999988664
No 346
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.45 E-value=0.00061 Score=48.76 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=44.9
Q ss_pred EecCCcEEEEEEeCCC--CCcceEEEEeCCCcCCCCC-CceeEecCCeEE---EEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 24 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGTAPRP-LTSYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 24 v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~l~~~-~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
+..|+.++|.|.+.+. |....++|+|++....... .......+++.. .|.+....+++...|+|.+.+.....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~ 89 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT 89 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence 4458999999995554 7777999999875412211 111222344333 44455444455678999999876443
No 347
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.44 E-value=0.0025 Score=45.47 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=40.4
Q ss_pred eecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCc-e------EEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823 132 LNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAG-R------IITNQTLVLQSVTRHSGGLYACSAINSQG 199 (365)
Q Consensus 132 ~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~-~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 199 (365)
+..++.++|.|.+.+ +|....++|.+||..+....... . ......|.+..-. ....|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g~ 86 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEGI 86 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECCC
Confidence 444678999999998 67777789999998864321100 1 1112233333221 23459999998543
No 348
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.42 E-value=0.00099 Score=47.39 Aligned_cols=70 Identities=13% Similarity=0.276 Sum_probs=45.6
Q ss_pred ceecCCcEEE-EEEEEecCCCCeeEEEeCCeEEe----eCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823 131 VLNEGVDIYF-DCHIQANPPYKKLIWTHNGITIS----NNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200 (365)
Q Consensus 131 ~~~~g~~v~l-~C~~~~~p~~~~i~W~~~~~~l~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 200 (365)
.+.+|+.+.+ .|.+.+..++..|.|+.+..-.. .....+...-.+.+.+.....+|.-.++|.+.+....
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 5678889999 99888544444599998522111 1111222222456777777778889999999988653
No 349
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.41 E-value=0.00055 Score=48.98 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=44.7
Q ss_pred eecCceEEEEEEEeee--CCCceeEEEeCCCCCCC-CCCceeEeeCCCEEEEEEcCCCcc---cCeEEEEEEEcCCcc
Q psy3823 236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAP-RPLTSYSIQDGSTSVARYTPTSEL---EYGTLLCWARNEQGS 307 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~s~l~i~~v~~~---d~G~Y~C~a~n~~g~ 307 (365)
+..|+.++|.|.+.|+ |+...+.|.++++.... .........+++.+......+..+ +.-.|+|.|.+..-.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 5568999999999988 55547999998742211 111112244555544444444443 455799999987543
No 350
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.39 E-value=0.0018 Score=45.66 Aligned_cols=64 Identities=20% Similarity=0.439 Sum_probs=42.6
Q ss_pred CCcEEEEEEEEe-cCCCCeeEEEeCCeEEee-------CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823 135 GVDIYFDCHIQA-NPPYKKLIWTHNGITISN-------NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199 (365)
Q Consensus 135 g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~-------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 199 (365)
|+.+.|.|.+.+ +|++. |.|+.++..+.. ....+.....+.|.+..-..++...++|.+.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQ-ITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EE-EEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeE-EEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 679999998875 56555 999998877711 01111222234666666556788899999998754
No 351
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.37 E-value=0.00066 Score=49.25 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=45.1
Q ss_pred ecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCc-e---eEec--CCe---EEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 25 LRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLT-S---YSIQ--DGS---TSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 25 ~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~-~---~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
..|+.++|.|.+ +..|....++|++++.. +..... . .... +++ .+.|.+..-.+.+...|+|.+.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~-~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQP-LSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEE-CCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 347889999994 44676668999999987 543321 1 1111 232 23455554445567789999998654
Q ss_pred CC
Q psy3823 95 NQ 96 (365)
Q Consensus 95 ~~ 96 (365)
..
T Consensus 93 ~~ 94 (102)
T cd05768 93 PL 94 (102)
T ss_pred Cc
Confidence 43
No 352
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.36 E-value=0.0011 Score=49.14 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=45.5
Q ss_pred eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeC-CCE---EEEEEcCCCccc-CeEEEEEEEcCCcc
Q psy3823 236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQD-GST---SVARYTPTSELE-YGTLLCWARNEQGS 307 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~-~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~g~ 307 (365)
+..++.++|.|.+.++ |....+.|++||......... .....+ ++. +.|.+......+ ...|+|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3456779999999885 554469999998643322111 111111 333 445555444333 56899999987665
Q ss_pred ceec
Q psy3823 308 QRTP 311 (365)
Q Consensus 308 ~~~~ 311 (365)
....
T Consensus 95 ~~~~ 98 (115)
T cd05769 95 DTDK 98 (115)
T ss_pred ccee
Confidence 5443
No 353
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.28 E-value=0.00056 Score=44.13 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=34.4
Q ss_pred ecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 25 LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 25 ~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
..|..|+|+|...+ . .+.|.+++.. +..... .+.+.+-. ++.|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~---~-~i~W~~n~~~-~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---D-DIKWKKNDQV-SQGSDE----------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---C-CceEEeCCcc-CCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence 35999999997542 2 5999999866 443111 33333444 789999999853
No 354
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.27 E-value=0.0018 Score=46.34 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=48.1
Q ss_pred CCeEEEEcCCccCccceecCCcEEEEEEEEe-c-CCCCeeEEEeCCeEEeeCCCCceE------EeeceEEEeeecCCCC
Q psy3823 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-N-PPYKKLIWTHNGITISNNASAGRI------ITNQTLVLQSVTRHSG 187 (365)
Q Consensus 116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~-p~~~~i~W~~~~~~l~~~~~~~~~------~~~~~l~i~~~~~~d~ 187 (365)
.|.+.+.+.+ ...+..+..++|.|.+.+ + |....+.|.++|.. ......... ...+.|.+..-.....
T Consensus 3 ~PsV~l~pPs---~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g 78 (99)
T cd04986 3 KPSLSLQRPA---LEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKG 78 (99)
T ss_pred CCEEEEECcC---hHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCC
Confidence 4555554332 123446788999999997 5 65677999998865 211111111 1133455554334455
Q ss_pred eEEEEEEEcCCCC
Q psy3823 188 GLYACSAINSQGE 200 (365)
Q Consensus 188 G~Y~C~~~~~~~~ 200 (365)
..|+|.+.+....
T Consensus 79 ~~ytC~V~H~~l~ 91 (99)
T cd04986 79 EPFACTVTHPEGD 91 (99)
T ss_pred CeEEEEEECCCcc
Confidence 6799999987653
No 355
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.27 E-value=0.0016 Score=46.37 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=43.7
Q ss_pred cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823 238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQ 308 (365)
Q Consensus 238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~ 308 (365)
.++.++|.|.+.|+ |....+.|.++|........ ......+++. +.|.+..-...+...|+|.|.+.....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 45669999999985 55457999999875322111 1112233433 345555444446679999998876543
No 356
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.21 E-value=0.0019 Score=44.39 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=37.3
Q ss_pred eEEEEEEEeeeCCC-ceeEEEeCCCCCCC-----------------CCCceeEeeC--CCEEEEEEcCCCcccCeEEEEE
Q psy3823 241 QVLVSCTVDANPQA-QYFTWAFNNSDTAP-----------------RPLTSYSIQD--GSTSVARYTPTSELEYGTLLCW 300 (365)
Q Consensus 241 ~~~l~C~~~~~p~~-~~~~W~~~~~~~~~-----------------~~~~~~~~~~--~~~s~l~i~~v~~~d~G~Y~C~ 300 (365)
+++|.|.+.....+ ..+.|++....... ...+...... .....|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36788988754433 13889875421100 0111112222 4567799999999999999996
Q ss_pred E
Q psy3823 301 A 301 (365)
Q Consensus 301 a 301 (365)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 357
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.16 E-value=0.0019 Score=46.16 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=39.2
Q ss_pred eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEe-eCCCEEEEEEcCCCcc-cCeEEEEEEEcCC
Q psy3823 236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSI-QDGSTSVARYTPTSEL-EYGTLLCWARNEQ 305 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~s~l~i~~v~~~-d~G~Y~C~a~n~~ 305 (365)
...+..++|.|.+.++ |....+.|.++|............. .+++.....-..+..+ ....|+|.|....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 3345779999999984 6555799999987543221111111 1223222222233333 3445999998843
No 358
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.16 E-value=0.0056 Score=43.68 Aligned_cols=64 Identities=8% Similarity=0.241 Sum_probs=40.3
Q ss_pred cCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC--CceE------EeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823 134 EGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS--AGRI------ITNQTLVLQSVTRHSGGLYACSAINSQ 198 (365)
Q Consensus 134 ~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~--~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 198 (365)
.++.++|.|.+.+ +|....++|.+||.. ..... .... .....|.+..........|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4667999999998 677777899999997 32110 0111 112234444433334667999999865
No 359
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.14 E-value=0.0037 Score=44.60 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=44.1
Q ss_pred CceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823 239 NEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ 308 (365)
Q Consensus 239 g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~ 308 (365)
.....+.|.+ .|.|.+. |.|+++..... ........++. .+.|.+.....+++..|+|.+.|..-..
T Consensus 15 ~~~~va~C~s~~gkP~a~-ItW~~~~~~~~--~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 15 EPVTVATCVSANGKPPAT-ISWETTLGGEA--ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred CccEEEEEECCCCcCCCE-EEEEeCCCCcc--eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 4568889999 5688888 99999621111 11111223343 5678887776677779999999987543
No 360
>KOG1480|consensus
Probab=97.14 E-value=0.0003 Score=66.63 Aligned_cols=162 Identities=14% Similarity=0.214 Sum_probs=90.5
Q ss_pred ceecCCcEEEEEEEEecCCCC---eeEEEeCCeEEee---CCCCceEEeeceEEEeeecCCCC---eEE--EEEEEcCCC
Q psy3823 131 VLNEGVDIYFDCHIQANPPYK---KLIWTHNGITISN---NASAGRIITNQTLVLQSVTRHSG---GLY--ACSAINSQG 199 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~~~p~~~---~i~W~~~~~~l~~---~~~~~~~~~~~~l~i~~~~~~d~---G~Y--~C~~~~~~~ 199 (365)
-+..|.++.|.|.+...+... +-.|.+...-... ....+.....-.+.|.....++. -.| +|.++...|
T Consensus 35 yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~cQc~a~~~~g 114 (909)
T KOG1480|consen 35 YIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYWCQCVAWSDDG 114 (909)
T ss_pred ceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccceeeeeeeecCCC
Confidence 366789999999875332211 1236654332221 11112222223344443333332 235 456777777
Q ss_pred CCCcccEEEEEeeeeecccccCCCCcee-cCccceeeeecCceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeEee
Q psy3823 200 EGGSTPFDLNINKMVNLIFNSIDEPVCK-QSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQ 277 (365)
Q Consensus 200 ~~~s~~~~l~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~~~ 277 (365)
...++...+.+. +.-... ..+.. ..|..+....|.|.. .+.|... +.|++++..... ........
T Consensus 115 ~~~s~~a~vr~a----------y~rk~f~~~p~~-q~V~~~s~~~l~cr~pe~~paae-~~w~k~e~~~~p-d~n~~~~~ 181 (909)
T KOG1480|consen 115 TVKSRKATVRIA----------YLRKHFEQSPVG-QEVQEETTLQLPCRPPEGDPKAE-VEWLKNEVVIDP-DANVIRAS 181 (909)
T ss_pred cchhhhHHHHHH----------HHHHhhccChhh-heecccccccccccCcccchhhh-hhccccCCCCCc-cccchhhh
Confidence 544443333332 111111 11111 126677888888877 4667776 999998875444 33333333
Q ss_pred CCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823 278 DGSTSVARYTPTSELEYGTLLCWARNEQGSQ 308 (365)
Q Consensus 278 ~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~ 308 (365)
+.. +.+..+...|.|.|+|+|.|-.+..
T Consensus 182 d~~---li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 182 DHN---LIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred cCC---ccccchhhhhcccceeeeehhhccc
Confidence 443 8889999999999999999988864
No 361
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.12 E-value=0.004 Score=46.51 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=44.0
Q ss_pred eecCceEEEEEEEeeeC--CCceeEEEeCCCCCCCC------------------CCceeEeeC--CCEEEEEEcCCCccc
Q psy3823 236 ALRNEQVLVSCTVDANP--QAQYFTWAFNNSDTAPR------------------PLTSYSIQD--GSTSVARYTPTSELE 293 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p--~~~~~~W~~~~~~~~~~------------------~~~~~~~~~--~~~s~l~i~~v~~~d 293 (365)
+.+|+.++|.|...+.. ... +.|++-.....+. ..++....+ .....|.|.+++.+|
T Consensus 9 v~~G~~vtL~C~~~~~~~~~~~-~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D 87 (117)
T cd04981 9 VKPGQSLKLSCKASGFTFTSYG-VNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPED 87 (117)
T ss_pred EcCCCCEEEEEEEeCCCcccce-EEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHH
Confidence 78999999999876433 344 9998743211110 011111111 234579999999999
Q ss_pred CeEEEEEEEc
Q psy3823 294 YGTLLCWARN 303 (365)
Q Consensus 294 ~G~Y~C~a~n 303 (365)
+|.|.|.+..
T Consensus 88 sa~YyCa~~~ 97 (117)
T cd04981 88 TAVYYCARGL 97 (117)
T ss_pred CEEEEEEEEc
Confidence 9999998865
No 362
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.12 E-value=0.0022 Score=44.05 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.0
Q ss_pred CeEEEEEEccCCCCCCeEEEEEE
Q psy3823 67 GSTSVARYTPTSELEYGTLLCWA 89 (365)
Q Consensus 67 ~~~~~l~i~~~~~~d~G~Y~C~a 89 (365)
.....|.|.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 45568999999999999999963
No 363
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.02 E-value=0.85 Score=50.95 Aligned_cols=194 Identities=13% Similarity=0.154 Sum_probs=105.7
Q ss_pred EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE--EEeCCCCCcccEE
Q psy3823 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW--ARNEQGNQRTPCT 101 (365)
Q Consensus 24 v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~~~~~~~~~~~~ 101 (365)
+..|+.++|.-........ .++|..++.. -........ +- +....|.|.-. |.|..+....++.
T Consensus 1709 aavn~~V~fs~~lt~GS~v-ty~W~~gdG~-s~~~s~p~~-------tH-----tf~~~G~y~VtVta~N~vss~~~s~~ 1774 (2740)
T TIGR00864 1709 AAVNALINLSAELAEGSGL-QYRWFLEEGD-DLETSEPFM-------SH-----SFPSAGLHLVTMKAFNELGSANASEE 1774 (2740)
T ss_pred ccCCCeEEEEEEecCCCCc-EEEEEECCCC-CcccCCCce-------EE-----EccCCceEEEEEEEEccccccceeEE
Confidence 3468999988875554555 9999987753 111111000 11 12256788765 4577776667777
Q ss_pred EEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEee
Q psy3823 102 FHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQS 181 (365)
Q Consensus 102 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~ 181 (365)
+.|.. |.....+. .........+..|..+.|.-.+.-..... ..|..++..-.. . ... .
T Consensus 1775 V~Vqe------pV~GL~i~--~~~~~~~~~~~ag~~v~F~a~vstGsnVs-w~W~f~~g~s~~--g-------k~v---~ 1833 (2740)
T TIGR00864 1775 VDVQE------PISGLKIR--AADAGEQNFFAADSSVCFQGELATGTNVS-WCWAIDGGSSKM--G-------KHA---C 1833 (2740)
T ss_pred EEEEe------ccccceEe--cCCCCcccceecCcEEEEEEEccCCCeeE-EEEEeCCCCccc--c-------cee---E
Confidence 77721 12222222 11100001244567777776654222222 777776432110 0 111 1
Q ss_pred ecCCCCeEEEEE--EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEE
Q psy3823 182 VTRHSGGLYACS--AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW 259 (365)
Q Consensus 182 ~~~~d~G~Y~C~--~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W 259 (365)
.+..++|.|+-. |.|..+... .+..+.|+ .++.-.........+..|+.++|.+.+...+... +.|
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~~-~s~~~~VQ----------e~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vt-f~w 1901 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGKS-ASREFFAE----------EPIFGLELKASKKIAAIGEKVEFQILLAAGSAVN-FRL 1901 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcce-eeeeEEEE----------EecceEEEecccccccCCCEEEEEEEecCCCceE-EEE
Confidence 456788999766 467776544 45667776 3332111111212277899999999987767666 999
Q ss_pred EeCCC
Q psy3823 260 AFNNS 264 (365)
Q Consensus 260 ~~~~~ 264 (365)
.+.+.
T Consensus 1902 ~fGdg 1906 (2740)
T TIGR00864 1902 QIGGA 1906 (2740)
T ss_pred EeCCC
Confidence 88754
No 364
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.96 E-value=0.0062 Score=43.38 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=45.8
Q ss_pred CceEEEEEEEe-eeCCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823 239 NEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313 (365)
Q Consensus 239 g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 313 (365)
.....+.|.+. +.|.+. |.|+.+.... .........+++ .+.|.+.....+|+..|+|.|.|..-.....+.
T Consensus 15 ~~~~va~C~s~~gkPaa~-IsW~~~~~g~--~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~ 90 (95)
T cd07703 15 IPVPVAKCVSANGRPPAR-ISWSSTLGGN--ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP 90 (95)
T ss_pred CccEEEEEEcCCCCCCcE-EEEEcCCCCC--eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 34588999886 578887 9999863211 011111223444 467888777777778999999998754433333
No 365
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.92 E-value=0.0049 Score=43.62 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=44.6
Q ss_pred EecCCcEEEEEE-eCCCCCc-ceEEEEeCCCcCCCCCCceeE----ecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823 24 ALRNEQVLVSCT-VDANPQA-QYFTWAFNNSGTAPRPLTSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQG 94 (365)
Q Consensus 24 v~~G~~~~l~C~-~~~~p~~-~~v~W~~~~~~~l~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~ 94 (365)
+.+|..+++.|. .+..|.. +.+.|++++.. +.+...... ........+.|.....+|..+|.|.|.-...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~-l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETL-LPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcce-ecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 378999999999 5556652 38999998876 554432110 1111223566766666666699999875443
No 366
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.88 E-value=0.0047 Score=40.18 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
.++|.|.|..+ . +|+|++ |....... ..+|.+-....+..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----t-si~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----T-NITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----C-cEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence 46899999652 3 899999 44412211 22677777788899999998765
No 367
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.88 E-value=0.0043 Score=44.29 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=40.5
Q ss_pred cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeCCCEE---EEEEcCCCcccCeEEEEEEEcCC
Q psy3823 238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQ 305 (365)
Q Consensus 238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~s---~l~i~~v~~~d~G~Y~C~a~n~~ 305 (365)
.++.++|.|.+.++ |....+.|.++|.. ...... .....+++.. .|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45679999999885 55557999999875 222111 1112245433 34444332223667999998865
No 368
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.80 E-value=0.031 Score=50.72 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=72.1
Q ss_pred ceEEEeeecCCCCeEEEEEEEcCCCC--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC
Q psy3823 175 QTLVLQSVTRHSGGLYACSAINSQGE--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252 (365)
Q Consensus 175 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p 252 (365)
..|.|..++..++|.|.=.+.+.... .....+.+.+. ..|.+...... +..|+...-.|.+..+-
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y----------r~PsVsV~p~P---VL~Ge~YkAtC~vA~YY 355 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY----------KRPNITVIGDP---VLLGNPYAAYCKVNKYY 355 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe----------cCCCccccCCc---cccCCCceEEEEeeeec
Confidence 45999999999999998655433221 22244555555 66765544444 78999999999998754
Q ss_pred CCc--eeEEEeCCCCCCCCCCc--eeEeeCCCE---EEEEEcCCCccc--CeEEEEEEEc
Q psy3823 253 QAQ--YFTWAFNNSDTAPRPLT--SYSIQDGST---SVARYTPTSELE--YGTLLCWARN 303 (365)
Q Consensus 253 ~~~--~~~W~~~~~~~~~~~~~--~~~~~~~~~---s~l~i~~v~~~d--~G~Y~C~a~n 303 (365)
++. .+.|+.||..+....-. .....+|.. |.|.+......| .-..+|.+.=
T Consensus 356 Pp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W 415 (566)
T PHA03269 356 PPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLW 415 (566)
T ss_pred CCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEE
Confidence 433 89999997765432211 223455543 445442222222 4567998763
No 369
>PHA02633 hypothetical protein; Provisional
Probab=96.80 E-value=0.0027 Score=40.19 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=31.9
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEE
Q psy3823 70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVV 105 (365)
Q Consensus 70 ~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~ 105 (365)
..|.|-++..+|+|.|.|..++..-....++.|+|.
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 368899999999999999999887777789999984
No 370
>PHA02982 hypothetical protein; Provisional
Probab=96.78 E-value=0.14 Score=41.23 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=72.1
Q ss_pred EEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCc------------------eeEecCCeEEEEEEccCCCCC
Q psy3823 21 IYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLT------------------SYSIQDGSTSVARYTPTSELE 81 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~------------------~~~~~~~~~~~l~i~~~~~~d 81 (365)
.+....|+++.|.|. .++.--. ...|+.++...+.+... ....-.+..++|+|.++..+.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~-~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEIS-RAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhh-hheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 345677999999998 3332223 88999865432331110 012245677899999999999
Q ss_pred CeEEEEEEEeCCCCCcc-cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecC-CcEEEEEEEEecCCCCeeEEEeCC
Q psy3823 82 YGTLLCWARNEQGNQRT-PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG-VDIYFDCHIQANPPYKKLIWTHNG 159 (365)
Q Consensus 82 ~G~Y~C~a~~~~~~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g-~~v~l~C~~~~~p~~~~i~W~~~~ 159 (365)
.|.|+|.+....+..+. .--|.| . .-.+.. .+.++ ....+.|-+-+...+. ..|.-+|
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V---------~-~~~V~~---------~W~e~nNeT~V~CyVgS~~~dv-p~W~V~G 171 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEI---------Q-KEDILY---------VVEEHNNETIITCFVGSKHGDV-PRFIVAG 171 (251)
T ss_pred CCceEEEEecCCCchheeheeeeE---------e-cceEEE---------EEEecCCeEEEEEEEEeccCCC-ccEEEee
Confidence 99999999976654431 222333 0 111112 12344 4456789886654443 4788776
Q ss_pred eE
Q psy3823 160 IT 161 (365)
Q Consensus 160 ~~ 161 (365)
..
T Consensus 172 Vv 173 (251)
T PHA02982 172 IV 173 (251)
T ss_pred EE
Confidence 53
No 371
>PHA02982 hypothetical protein; Provisional
Probab=96.76 E-value=0.11 Score=41.73 Aligned_cols=119 Identities=13% Similarity=0.267 Sum_probs=73.1
Q ss_pred ccceecCCcEEEEEEEEecCCCCeeEEEeC-CeEEeeCC----------------C--CceE--EeeceEEEeeecCCCC
Q psy3823 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHN-GITISNNA----------------S--AGRI--ITNQTLVLQSVTRHSG 187 (365)
Q Consensus 129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~-~~~l~~~~----------------~--~~~~--~~~~~l~i~~~~~~d~ 187 (365)
++....++.|.|.|..+......+..|..+ +..+.... . .... ..+++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 345567899999999765444444789873 33332100 0 0011 1257899999999999
Q ss_pred eEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCC
Q psy3823 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS 264 (365)
Q Consensus 188 G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~ 264 (365)
|-|+|++....+....-.-.|.|+ ....+-. . ..-.....+.|-+-+...+. ..|..+|-
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~----------~~~V~~~---W---~e~nNeT~V~CyVgS~~~dv-p~W~V~GV 172 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQ----------KEDILYV---V---EEHNNETIITCFVGSKHGDV-PRFIVAGI 172 (251)
T ss_pred CceEEEEecCCCchheeheeeeEe----------cceEEEE---E---EecCCeEEEEEEEEeccCCC-ccEEEeeE
Confidence 999999998776655334566664 1111100 0 11234467889987766665 67887664
No 372
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.72 E-value=0.0031 Score=40.73 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=34.2
Q ss_pred ecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 303 (365)
Q Consensus 237 ~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n 303 (365)
..|..|+|+|...+ .. +.|.+++... . +....+.+.+-. +++|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~---~~-i~W~~n~~~~-~----------g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---DD-IKWKKNDQVS-Q----------GSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---CC-ceEEeCCccC-C----------CCCceEEeeccC-CCCceEEEEeCC
Confidence 46899999998652 22 9999987422 1 112234455555 889999999954
No 373
>KOG0613|consensus
Probab=96.68 E-value=0.009 Score=60.38 Aligned_cols=228 Identities=11% Similarity=0.009 Sum_probs=122.5
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEE-eccccCCC------CCCCeEEEEcCCccCccceecCCcEEEEEE
Q psy3823 71 VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVV-KAGECEHP------VDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143 (365)
Q Consensus 71 ~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~-~~~~~~~~------~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~ 143 (365)
...+.+....+.+.|+|......++....+...+. ........ ..+|...+.. .....+....+..+++.|.
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~-~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGL-VRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccc-cccceeccccCcceeeccc
Confidence 45566666777888999888777776633332221 11111100 1122211111 1113344566788999999
Q ss_pred EEecCCCCeeEEEeCCeEEeeCCCC----ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccc
Q psy3823 144 IQANPPYKKLIWTHNGITISNNASA----GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFN 219 (365)
Q Consensus 144 ~~~~p~~~~i~W~~~~~~l~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~ 219 (365)
..+...+..+.|++++......... ........+.+..+...+.+.|.|.+.|..|....... ..+..+. -
T Consensus 358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~-~~vs~~~----~ 432 (1205)
T KOG0613|consen 358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE-STVSEEM----P 432 (1205)
T ss_pred ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccch-hhccccc----C
Confidence 9998888889999976555432211 11222457888899999999999999999986542221 2222000 0
Q ss_pred cCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823 220 SIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 298 (365)
Q Consensus 220 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~ 298 (365)
...++.+............-+.+.+.|...+.+.+. .+.|++.+-...... .... .+....|.+.-....+++.|.
T Consensus 433 gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s--~~l~-r~~~tslLlk~~~~~~~A~~~ 509 (1205)
T KOG0613|consen 433 GTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRS--VTLT-RDVLTSLLLKVASLSDGAQYT 509 (1205)
T ss_pred CCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccccc--cccc-ccchhhheeeccCCCccchhh
Confidence 001122221111111122337788899888766332 377776544322111 1111 222333556666678888886
Q ss_pred EEEEcCCcc
Q psy3823 299 CWARNEQGS 307 (365)
Q Consensus 299 C~a~n~~g~ 307 (365)
-......|.
T Consensus 510 ~a~~~~~~k 518 (1205)
T KOG0613|consen 510 RALRTLQGK 518 (1205)
T ss_pred hhhhccCCC
Confidence 555444443
No 374
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.62 E-value=0.0067 Score=39.50 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=36.5
Q ss_pred CCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEc
Q psy3823 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN 196 (365)
Q Consensus 135 g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 196 (365)
.+.|.|.|... ..|.|++ |..+... .+.+|.+.....+..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~-----tsi~W~k-G~~~~~~-------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA-----TNITWKK-GKEILEV-------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC-----CcEEEec-Ccccccc-------cccEEeccCcccCCCcceEecCcc
Confidence 35799999651 3399999 6555421 156788888889999999998876
No 375
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.43 E-value=0.63 Score=41.49 Aligned_cols=84 Identities=10% Similarity=-0.031 Sum_probs=52.3
Q ss_pred eEEEEecCCcE-EEEEEeCCCCCcceEEEEeCCCcCCCCCCc-----eeEec-------CCeEEEEEEccCCCCCCeEEE
Q psy3823 20 RIYGALRNEQV-LVSCTVDANPQAQYFTWAFNNSGTAPRPLT-----SYSIQ-------DGSTSVARYTPTSELEYGTLL 86 (365)
Q Consensus 20 ~~~~v~~G~~~-~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~-------~~~~~~l~i~~~~~~d~G~Y~ 86 (365)
..+.++.|+.. .|+|...+.-.+..+.-.+++.. -..-.. ..... ......+.+.+++.+|.|.|+
T Consensus 19 ynIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~-~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYr 97 (500)
T PHA02914 19 YNIFLRNEDEELALTCILPAAKMADKVVLIKGNDM-NNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFK 97 (500)
T ss_pred ceEEEecCceEEeeEEEcCCCccccEEEEEeccCC-CCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEE
Confidence 34556777777 99999544444437777775432 111111 00001 134567889999999999999
Q ss_pred EEEEeCCCCCc-ccEEEEE
Q psy3823 87 CWARNEQGNQR-TPCTFHV 104 (365)
Q Consensus 87 C~a~~~~~~~~-~~~~l~V 104 (365)
|.......+.- +.+.+.|
T Consensus 98 CIFYLn~~EtyrH~I~vrV 116 (500)
T PHA02914 98 CIFYLGDNESHKHEILVRK 116 (500)
T ss_pred EEEEeCCceeEEEEEEEEE
Confidence 99876555443 7788887
No 376
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.39 E-value=0.071 Score=47.79 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=74.7
Q ss_pred eceEEEeeecCCCCeEEEEEEEcCCCCC-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC
Q psy3823 174 NQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p 252 (365)
.+.|.|..++...+|.|+=..-+..+.. ....+.+... .+|.+...... +..|+...-.|.+..+-
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y----------r~Psvsv~~~P---vL~Ge~Y~AtC~va~YY 247 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF----------RRPSLSIRPHA---VLEGEPFGATCVAANYY 247 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe----------cCCcccccCCc---cccCCCceEEEEeeeec
Confidence 4679999999999999999877665532 2233455555 56765554444 78899999999998754
Q ss_pred CCc--eeEEEeCCCCCCC-CCCcee-E-eeCC--CEEEEEEcCCCcc-cCeEEEEEEEcC
Q psy3823 253 QAQ--YFTWAFNNSDTAP-RPLTSY-S-IQDG--STSVARYTPTSEL-EYGTLLCWARNE 304 (365)
Q Consensus 253 ~~~--~~~W~~~~~~~~~-~~~~~~-~-~~~~--~~s~l~i~~v~~~-d~G~Y~C~a~n~ 304 (365)
++. .+.|+.||..... ...... . ..++ ..|.+.+.....+ ..-..+|.+.=.
T Consensus 248 Pp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~ 307 (466)
T PHA03270 248 PGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWH 307 (466)
T ss_pred CCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEc
Confidence 443 8999999986542 221111 1 2233 2344544443222 234799988633
No 377
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.38 E-value=2.4 Score=47.66 Aligned_cols=265 Identities=15% Similarity=0.187 Sum_probs=142.4
Q ss_pred EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEE--EEEeCCCCCcccE
Q psy3823 23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC--WARNEQGNQRTPC 100 (365)
Q Consensus 23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~~~~~~~~~~~ 100 (365)
.+..|+.++|.+.....+.. .+.|..++.. -.... .+. .-.-.+ ..-|.|.- .+.|..+.....+
T Consensus 1878 ~~~~n~~v~fsa~l~~GS~V-tf~w~fGdgs-~~~~t-----~~~-t~~HsY-----~~~G~Y~VtV~A~N~Vs~~~a~~ 1944 (2740)
T TIGR00864 1878 IAAIGEKVEFQILLAAGSAV-NFRLQIGGAA-PEVLQ-----PGP-RFSHSF-----PRVDDHMVNLRAKNEVSCAQANL 1944 (2740)
T ss_pred cccCCCEEEEEEEecCCCce-EEEEEeCCCC-ceeec-----CCC-eEEeec-----CCCCcEEEEEEEEeccceeeeeE
Confidence 35679999999996555666 9999887643 11100 011 001111 13355655 4456666666666
Q ss_pred EEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEe
Q psy3823 101 TFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQ 180 (365)
Q Consensus 101 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~ 180 (365)
.+.|+.+ -..+.+.... . ..+..|+..+|.-.+....+.. +.|+++-+.+..... .......++..
T Consensus 1945 ~V~Vle~--------V~gL~I~~~c--~-~~~~~g~~~tF~A~v~~g~~V~-f~W~f~~~~~~g~~~--~~~~G~~vty~ 2010 (2740)
T TIGR00864 1945 HIEVLEA--------VRGLQIPDCC--A-AGIATGEEKNFTANVQRGKPVA-FAWTFDLHHLHGDSL--VIHMGKDVSYT 2010 (2740)
T ss_pred EEEEEEe--------ccceEecCCc--c-cceecCceEEEEEEEecCCceE-EEEEeeecccCCCcc--eeecCCceEEc
Confidence 6666311 1112222111 1 1256789999999887555545 899976433322111 12222222222
Q ss_pred eecCCCCeEEEEE--EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeE
Q psy3823 181 SVTRHSGGLYACS--AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258 (365)
Q Consensus 181 ~~~~~d~G~Y~C~--~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~ 258 (365)
....|.|.-. |.|..+... ....+.|+ .+...............+..+.+.|.+...+....+.
T Consensus 2011 ---~~~~G~~~I~v~A~N~l~s~n-~t~~i~VQ----------~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~ 2076 (2740)
T TIGR00864 2011 ---AEAAGLLEIQLGAFNALGAEN-ITLQLEAQ----------DALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACH 2076 (2740)
T ss_pred ---cCCCcEEEEEEEEEcccCccc-ccEEEEEE----------eheeeEEEeecCcceecCceEEEEEEEccCCCcEEEE
Confidence 2468888765 457666533 55566666 2222111111111256688999999986544332499
Q ss_pred EEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEE--EEcCCccceecEEEEEEcCccccc------------
Q psy3823 259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW--ARNEQGSQRTPCTFHVVKAGECEH------------ 324 (365)
Q Consensus 259 W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~~~c~~------------ 324 (365)
|-+.++......... ..++. . ...|.|.-. |.|..........+.|.... |.-
T Consensus 2077 WDFGDGt~~~~T~~~------~~sHt-Y-----~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~-C~~P~V~i~~~~~~~ 2143 (2740)
T TIGR00864 2077 WDFGDGSAGQDTDEP------RAEHE-Y-----LHPGDYRVQVNASNLVSFFSAHAEINVQVLA-CEEPEVDVVLALQLA 2143 (2740)
T ss_pred EEecCCCCccccCCc------eeEEE-e-----cCCccEEEEEEEEcceeeeeeEEEEEEEEec-CCCCCcEeccCceeE
Confidence 988765332221111 11111 1 234777764 55777776666666554332 221
Q ss_pred -----------------cCccccEEEEEEEEEcC
Q psy3823 325 -----------------PVAVSHRYVAKLYATNA 341 (365)
Q Consensus 325 -----------------~l~~~~~~~~~~~~~n~ 341 (365)
-+.-+..|.|.++..++
T Consensus 2144 i~RSq~~~lEa~V~l~~ci~y~~~y~W~v~~~~~ 2177 (2740)
T TIGR00864 2144 IRRSQPNLLEAHVDLKDCLRYGAEYLWEILRAAS 2177 (2740)
T ss_pred EEecCcceEEEEEccccccccccEEEEEEEeccc
Confidence 25568999999988774
No 378
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.37 E-value=0.015 Score=41.16 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=41.2
Q ss_pred ceecCCcEEEEEEEEe-cCC-CCeeEEEeCCeEEeeCCCCce------EEeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823 131 VLNEGVDIYFDCHIQA-NPP-YKKLIWTHNGITISNNASAGR------IITNQTLVLQSVTRHSGGLYACSAINSQ 198 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~~-~p~-~~~i~W~~~~~~l~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 198 (365)
.+.+|..+++.|.+.+ +|. ...+.|+++...+....-... ......+++.....++...|+|+|.-..
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEee
Confidence 4578999999999985 343 234889987666543211100 0112345555545555569999987443
No 379
>PHA02633 hypothetical protein; Provisional
Probab=96.30 E-value=0.011 Score=37.43 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.2
Q ss_pred EEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCccc
Q psy3823 283 VARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGEC 322 (365)
Q Consensus 283 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~c 322 (365)
.|.|.++..+|+|.|.|...|..-....++.|+|-....|
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~~ 58 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIES 58 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecccc
Confidence 3788899999999999999998877888888888665433
No 380
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.27 E-value=0.047 Score=40.00 Aligned_cols=72 Identities=8% Similarity=-0.087 Sum_probs=46.3
Q ss_pred CceEEEEecCCcEEEEEEeC--CCCCcceEEEEeCCCcCC------------C--CCCce--eEecCCeEEEEEEccCCC
Q psy3823 18 QQRIYGALRNEQVLVSCTVD--ANPQAQYFTWAFNNSGTA------------P--RPLTS--YSIQDGSTSVARYTPTSE 79 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~--~~p~~~~v~W~~~~~~~l------------~--~~~~~--~~~~~~~~~~l~i~~~~~ 79 (365)
++....+..|+.++|.|+.. .......+.|+|.....+ . ..... ....+...-.|.+.+++.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 34556678899999999953 344412899998644311 0 00110 112334445799999999
Q ss_pred CCCeEEEEEE
Q psy3823 80 LEYGTLLCWA 89 (365)
Q Consensus 80 ~d~G~Y~C~a 89 (365)
+|++.|.|..
T Consensus 84 ~DTa~Y~Ca~ 93 (115)
T cd05721 84 NQTDIYFCKI 93 (115)
T ss_pred HHCeEEEEEe
Confidence 9999999963
No 381
>KOG1480|consensus
Probab=96.05 E-value=0.0038 Score=59.48 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=58.8
Q ss_pred EEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-cc
Q psy3823 22 YGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TP 99 (365)
Q Consensus 22 ~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~ 99 (365)
-.|..+..+.|.|. ..+.|.+ .+.|++++.. +..........+. .+++.++...|.|+|+|+|.|..+... ..
T Consensus 139 q~V~~~s~~~l~cr~pe~~paa-e~~w~k~e~~-~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~~~~ 213 (909)
T KOG1480|consen 139 QEVQEETTLQLPCRPPEGDPKA-EVEWLKNEVV-IDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRKSDP 213 (909)
T ss_pred heecccccccccccCcccchhh-hhhccccCCC-CCccccchhhhcC---Cccccchhhhhcccceeeeehhhccccccc
Confidence 34677899999999 8888999 9999999987 6553332222333 688999999999999999998777655 44
Q ss_pred EEEEE
Q psy3823 100 CTFHV 104 (365)
Q Consensus 100 ~~l~V 104 (365)
+.+.+
T Consensus 214 ~~v~v 218 (909)
T KOG1480|consen 214 ATVQV 218 (909)
T ss_pred eEEEE
Confidence 44444
No 382
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.95 E-value=0.011 Score=44.32 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=43.2
Q ss_pred EecCCcEEEEEEeCCCC----CcceEEEEeCCCcCCC---CCCcee----------EecCCeEEEEEEccCCCCCCeEEE
Q psy3823 24 ALRNEQVLVSCTVDANP----QAQYFTWAFNNSGTAP---RPLTSY----------SIQDGSTSVARYTPTSELEYGTLL 86 (365)
Q Consensus 24 v~~G~~~~l~C~~~~~p----~~~~v~W~~~~~~~l~---~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~ 86 (365)
..-+++|.|+|.+...+ ....+.|.+++.. +- ...... ........+|.+.....- .|+|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~-If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKD-IFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEE-EEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeE-EEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 46799999999965311 1227999998875 31 111100 000012225777765443 79999
Q ss_pred EEEEeCCCCCcccEEEEE
Q psy3823 87 CWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 87 C~a~~~~~~~~~~~~l~V 104 (365)
|++.......+..+.|..
T Consensus 102 CeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEE
Confidence 999987776667777765
No 383
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.89 E-value=0.25 Score=44.15 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=71.9
Q ss_pred eceEEEeeecCCCCeEEEEEEEcCCCCC-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC
Q psy3823 174 NQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p 252 (365)
+-.|.|.++...++|.|+-...+..... ..+.+.+.+.. -+|.+...... +..|+...-.|.+..+-
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---------RPPsVsV~a~P---VL~Ge~YkAtC~vAnYY 273 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---------RPASVDVLAPP---VLSGENYKASCIVRHFY 273 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe---------cCCCccccCCc---cccCCCceEEEEeeeec
Confidence 3468899999999997755555544332 11334445541 34445444444 78899999999998764
Q ss_pred CCc--eeEEEeCCCCCCCCCCcee-E---ee-CC--CEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823 253 QAQ--YFTWAFNNSDTAPRPLTSY-S---IQ-DG--STSVARYTPTSELEYGTLLCWARNEQG 306 (365)
Q Consensus 253 ~~~--~~~W~~~~~~~~~~~~~~~-~---~~-~~--~~s~l~i~~v~~~d~G~Y~C~a~n~~g 306 (365)
++. .+.|+.||........... . .. ++ ..+.|.+-+...+..-..+|.+.=..+
T Consensus 274 PP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 274 PPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred CCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 443 8999999886644332211 1 11 11 234454444333445589998874433
No 384
>PHA03273 envelope glycoprotein C; Provisional
Probab=95.87 E-value=0.18 Score=45.68 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=73.1
Q ss_pred ceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC
Q psy3823 175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA 254 (365)
Q Consensus 175 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 254 (365)
..|.|..++...+|.|+=...+..+... ...+++|... .+|.+...... +..|+...-.|.+..+-++
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~-~~~~VtV~~y--------r~Psvsv~~~P---vL~Ge~y~A~C~aa~YYPp 265 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLV-NSTSVTVSTY--------NAPLVDLSVHP---SLKGENYRAVCVVASYFPH 265 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCcee-eeeEEEEEEe--------cCCcccccCCc---cccCCCceEEEEeeeecCC
Confidence 4599999999999999855545444222 2344444310 56665544444 7899999999999875443
Q ss_pred c--eeEEEeCCCCCCC-CC-Cc-eeEeeCCC---EEEEEEcCCCc-ccCeEEEEEEEc
Q psy3823 255 Q--YFTWAFNNSDTAP-RP-LT-SYSIQDGS---TSVARYTPTSE-LEYGTLLCWARN 303 (365)
Q Consensus 255 ~--~~~W~~~~~~~~~-~~-~~-~~~~~~~~---~s~l~i~~v~~-~d~G~Y~C~a~n 303 (365)
. .+.|+.||..... .. .. .....++. .|.|.+..... +..-..+|.+.=
T Consensus 266 ~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W 323 (486)
T PHA03273 266 SSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEW 323 (486)
T ss_pred CceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEE
Confidence 3 8999999986652 21 11 12233343 35565555433 335689998863
No 385
>PHA03042 CD47-like protein; Provisional
Probab=95.62 E-value=0.068 Score=44.92 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=46.7
Q ss_pred ecCCcEEEEEEeCCCC-----CcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823 25 LRNEQVLVSCTVDANP-----QAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP 99 (365)
Q Consensus 25 ~~G~~~~l~C~~~~~p-----~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~ 99 (365)
.-++++.++|..+. + ....+.|..++.. +-.... . +..+|.+... .+-.|+|+|+|.+.....+..
T Consensus 29 ~CN~TV~IpC~v~n-~~~~ni~~~~V~Wkf~~~~-If~~n~-----t-n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 29 TCNKTIVIVCNLNL-LIYYNISNIHINWKFNNKV-IFKKNN-----T-NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred ecCceEEEEeecCC-hhhcCccceEEEEEeCCee-EEEecC-----C-cceEEEEecc-ccCCCceeEEEeecccCccEE
Confidence 56899999999653 3 2227999999887 322111 1 2245665433 335799999999877666666
Q ss_pred EEEEE
Q psy3823 100 CTFHV 104 (365)
Q Consensus 100 ~~l~V 104 (365)
++|.-
T Consensus 100 IeLk~ 104 (286)
T PHA03042 100 IELQY 104 (286)
T ss_pred EEEEE
Confidence 66664
No 386
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.46 E-value=0.016 Score=43.36 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=40.5
Q ss_pred cCCcEEEEEEEEe---cC-CCCeeEEEeCCeEEeeCCCCceEE---------------eeceEEEeeecCCCCeEEEEEE
Q psy3823 134 EGVDIYFDCHIQA---NP-PYKKLIWTHNGITISNNASAGRII---------------TNQTLVLQSVTRHSGGLYACSA 194 (365)
Q Consensus 134 ~g~~v~l~C~~~~---~p-~~~~i~W~~~~~~l~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~ 194 (365)
-+++|.|.|.+.. .+ ....++|.++|..+-......... .+.+|.+...+.- .|+|+|++
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 4789999998863 11 123389999998875322221111 1234666664433 79999999
Q ss_pred EcCCCCCCcccEEEEEe
Q psy3823 195 INSQGEGGSTPFDLNIN 211 (365)
Q Consensus 195 ~~~~~~~~s~~~~l~v~ 211 (365)
........ ..+.|...
T Consensus 105 t~~~~ege-~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGE-TTIELKYR 120 (130)
T ss_dssp EETTEEEE-EEEEEEE-
T ss_pred EecCCCce-EEEEEEEE
Confidence 86654333 34555543
No 387
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.24 E-value=0.26 Score=36.14 Aligned_cols=67 Identities=7% Similarity=-0.062 Sum_probs=43.3
Q ss_pred eecCceEEEEEEEeeeCCCc--eeEEEeCCCCC------------CC--CCCce--eEeeCCCEEEEEEcCCCcccCeEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQ--YFTWAFNNSDT------------AP--RPLTS--YSIQDGSTSVARYTPTSELEYGTL 297 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~--~~~W~~~~~~~------------~~--~~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y 297 (365)
+..|+.++|+|.+.+..... .+.|.+..... -. ...+. ....+...-.|.+.+++.+|.+.|
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y 89 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIY 89 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEE
Confidence 77888999999997654332 58888743221 00 00111 113334456799999999999999
Q ss_pred EEEEE
Q psy3823 298 LCWAR 302 (365)
Q Consensus 298 ~C~a~ 302 (365)
.|...
T Consensus 90 ~Ca~e 94 (115)
T cd05721 90 FCKIE 94 (115)
T ss_pred EEEee
Confidence 99764
No 388
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.04 E-value=0.059 Score=45.16 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=39.5
Q ss_pred CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823 39 NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 93 (365)
Q Consensus 39 ~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~ 93 (365)
..+| .+.|..++...++..........| .|.+.+...+++|.|+|......
T Consensus 10 ~iDP-~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 10 LIDP-TYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred cCCC-ceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 4577 999999877635554444444556 79999999999999999988755
No 389
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.98 E-value=0.16 Score=42.58 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=36.9
Q ss_pred CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823 252 PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ 305 (365)
Q Consensus 252 p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~ 305 (365)
..|. +.|..+++....+.....+...|. |.+.+..+.++|.|+|......
T Consensus 11 iDP~-y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPT-YLWTGPNGKPLSGNSYVNITETGK---LMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCc-eEEECCCCcccCCCCeEEEccCce---EEeeccccccCCceEEEEEEEe
Confidence 4576 999987765544444445555553 9999999999999999997644
No 390
>PHA03042 CD47-like protein; Provisional
Probab=94.16 E-value=0.27 Score=41.42 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=45.7
Q ss_pred eecCceEEEEEEEeeeC----CCceeEEEeCCCCCCCCCCceeEeeCC-CEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823 236 ALRNEQVLVSCTVDANP----QAQYFTWAFNNSDTAPRPLTSYSIQDG-STSVARYTPTSELEYGTLLCWARNEQGSQRT 310 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p----~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 310 (365)
..-++++.+.|.++..- ...++.|.+++..... .++ ..+.|.+. -...-.|+|+|+|.+.....+.
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~--------~n~tn~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK--------KNNTNTSSLKFN-FSKNLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEE--------ecCCcceEEEEe-ccccCCCceeEEEeecccCccE
Confidence 55679999999997531 1126999998763211 112 22345443 3344589999999987776666
Q ss_pred cEEEEE
Q psy3823 311 PCTFHV 316 (365)
Q Consensus 311 ~~~l~v 316 (365)
.+.++-
T Consensus 99 ~IeLk~ 104 (286)
T PHA03042 99 TIELQY 104 (286)
T ss_pred EEEEEE
Confidence 555543
No 391
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.11 E-value=4.2 Score=36.51 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=91.4
Q ss_pred eEEEEecCCcEEEEEE--eCCCCCcceEEEEeCCCcCCCC-----------------CCceeE------ecCCeEEEEEE
Q psy3823 20 RIYGALRNEQVLVSCT--VDANPQAQYFTWAFNNSGTAPR-----------------PLTSYS------IQDGSTSVARY 74 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~--~~~~p~~~~v~W~~~~~~~l~~-----------------~~~~~~------~~~~~~~~l~i 74 (365)
..+.+..|..+.|.|. .-++-.....+|+--+-+ +.. ...... ..+...++|+|
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~-~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI 350 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFE-IGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI 350 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCc-ccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence 4567778999999998 334443347899876544 221 011111 12335678999
Q ss_pred ccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecC-CcEEEEEEEEec-CCCCe
Q psy3823 75 TPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG-VDIYFDCHIQAN-PPYKK 152 (365)
Q Consensus 75 ~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g-~~v~l~C~~~~~-p~~~~ 152 (365)
.+++-...|.|+|.|.......+..--|.| .-.+... -..+| ......|-+-.. ..|..
T Consensus 351 kka~I~N~GCY~~~a~~g~~~~ec~~Cl~V-----------~d~V~f~--------W~~e~~n~T~V~Cyv~sy~~kp~s 411 (500)
T PHA02914 351 KKAHINNAGCYEAQAFMGKFKEECRHCFKV-----------ADHVFFK--------WNTEGDNETKVACYAAQYDMQPFS 411 (500)
T ss_pred eeEEEEcCCceEEEEecCcchhhhhhheEe-----------ccEEEEE--------EEeccCceEEEEEEEEecccCCce
Confidence 999999999999999865443333333444 1122221 12254 345567877655 44544
Q ss_pred eEEEeCCeEEeeCCCCce------EEe---eceEEEeeecCCC-CeEEEEEEEcCCCC
Q psy3823 153 LIWTHNGITISNNASAGR------IIT---NQTLVLQSVTRHS-GGLYACSAINSQGE 200 (365)
Q Consensus 153 i~W~~~~~~l~~~~~~~~------~~~---~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 200 (365)
+.|..+|.......-... ... ...+.|.+-...| --.-.|+..-..+.
T Consensus 412 i~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 412 ILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred eEEEEccEEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 899988866543211111 111 2356666655555 34566776654443
No 392
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=94.07 E-value=2.8 Score=34.40 Aligned_cols=133 Identities=13% Similarity=0.203 Sum_probs=63.0
Q ss_pred CeeEEEeCCeEEeeCCCC--------ceEEeeceEEE-eeecCCCCeEEEEEEEcCCCC-CC---cccEEEEEeeeeecc
Q psy3823 151 KKLIWTHNGITISNNASA--------GRIITNQTLVL-QSVTRHSGGLYACSAINSQGE-GG---STPFDLNINKMVNLI 217 (365)
Q Consensus 151 ~~i~W~~~~~~l~~~~~~--------~~~~~~~~l~i-~~~~~~d~G~Y~C~~~~~~~~-~~---s~~~~l~v~~~~~~~ 217 (365)
..+.|+.||.++...... +.....++|.+ .+......-..+|.+.-.... .. ++...-.|.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy------ 80 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVY------ 80 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccccccee------
Confidence 448899999877632111 11111234445 222333446789998633322 21 112222233
Q ss_pred cccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCceeE----eeCCCEEEEEEcCCCcc
Q psy3823 218 FNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTSYS----IQDGSTSVARYTPTSEL 292 (365)
Q Consensus 218 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~~~----~~~~~~s~l~i~~v~~~ 292 (365)
.+|.+. .....|. ..|.+.--|... .+.|..++............ ...+........+++..
T Consensus 81 ----~~P~vs------v~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~ 147 (211)
T PF02124_consen 81 ----PKPRVS------VRFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDE 147 (211)
T ss_pred ----cCCEEE------EEecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCcc
Confidence 344332 2133333 348887777552 69999877643111111111 12222233333445444
Q ss_pred cC-eEEEEEEE
Q psy3823 293 EY-GTLLCWAR 302 (365)
Q Consensus 293 d~-G~Y~C~a~ 302 (365)
|+ -+|+|.+.
T Consensus 148 ~~~~~YtC~l~ 158 (211)
T PF02124_consen 148 DGPVEYTCRLI 158 (211)
T ss_pred CCceeEEEEEe
Confidence 42 38999886
No 393
>KOG4597|consensus
Probab=93.50 E-value=0.12 Score=46.80 Aligned_cols=95 Identities=19% Similarity=0.102 Sum_probs=65.4
Q ss_pred cCCeEee-CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeC---CCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeE
Q psy3823 10 DEPVCKQ-SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN---NSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGT 84 (365)
Q Consensus 10 ~~p~~~~-~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~---~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~ 84 (365)
++|.+.. ..+....+..|++..++|.+.|.|.+ .|+|.+- ....+......... .-...-.|.|-+....|+|.
T Consensus 193 ~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w 271 (560)
T KOG4597|consen 193 FEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGW 271 (560)
T ss_pred CCCCcccccCcchhhcccchhhcccccccCCcCc-eeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCc
Confidence 3443333 23455667899999999998899999 9999652 22201111111111 11233479999999999999
Q ss_pred EEEEEEeCCCCCcccEEEEEE
Q psy3823 85 LLCWARNEQGNQRTPCTFHVV 105 (365)
Q Consensus 85 Y~C~a~~~~~~~~~~~~l~V~ 105 (365)
|+|.+++..|.....+.+.+.
T Consensus 272 ~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 272 YTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred eeeccccccceeeccceeeee
Confidence 999999999988888888773
No 394
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.54 E-value=0.64 Score=41.00 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=38.1
Q ss_pred eEEEEEEEeee-CCCceeEEEeC---------C---CCCCCCC----Cc------eeEeeCC-CEEEEEEcCCCcccCeE
Q psy3823 241 QVLVSCTVDAN-PQAQYFTWAFN---------N---SDTAPRP----LT------SYSIQDG-STSVARYTPTSELEYGT 296 (365)
Q Consensus 241 ~~~l~C~~~~~-p~~~~~~W~~~---------~---~~~~~~~----~~------~~~~~~~-~~s~l~i~~v~~~d~G~ 296 (365)
.++|+|.+.|+ |....+.|.++ | ....... .. ..-..+| +.....-..+..++...
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~~ 295 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSNQ 295 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCCC
Confidence 57999999985 55557999998 3 1001100 00 1112353 54443333555667778
Q ss_pred EEEEEEcCC
Q psy3823 297 LLCWARNEQ 305 (365)
Q Consensus 297 Y~C~a~n~~ 305 (365)
|+|++.+..
T Consensus 296 Y~C~V~Hsg 304 (338)
T PHA02865 296 IVCVVFHST 304 (338)
T ss_pred cEEEEEeCC
Confidence 999998753
No 395
>KOG4597|consensus
Probab=92.34 E-value=0.2 Score=45.52 Aligned_cols=81 Identities=19% Similarity=0.064 Sum_probs=60.5
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeC---CCCCCCCCCceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFN---NSDTAPRPLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT 310 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~---~~~~~~~~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 310 (365)
+..+++..++|.+.|.+.+. +.|.+- +..+... +...+. .-.++..|.|-+....|+|-|+|.+.|.+|...+
T Consensus 208 vg~wetcS~tCg~~G~q~r~-V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~r 285 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRV-VTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRR 285 (560)
T ss_pred cccchhhcccccccCCcCce-eeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeec
Confidence 78899999999999999998 999862 2222222 221111 1123456889999999999999999999999999
Q ss_pred cEEEEEEc
Q psy3823 311 PCTFHVVK 318 (365)
Q Consensus 311 ~~~l~v~~ 318 (365)
++.+.+..
T Consensus 286 dv~c~s~~ 293 (560)
T KOG4597|consen 286 DVPCSSVK 293 (560)
T ss_pred cceeeeec
Confidence 99987653
No 396
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=92.09 E-value=1.1 Score=31.50 Aligned_cols=71 Identities=18% Similarity=0.373 Sum_probs=44.3
Q ss_pred EEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823 30 VLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH 103 (365)
Q Consensus 30 ~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~ 103 (365)
+.-.|. ++|+|++ .++|.-+-.. .. ........++ -.+.+.+.+....|....+|.+.+..-.-...+.|.
T Consensus 23 ~VA~CiSa~GrPpa-~ItW~t~l~G-~~-etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPS-VVRWDTRLKG-EA-EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCc-EeEEEccCCC-ce-eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 445698 9999999 9999854222 11 0111112233 234567778888899999999998644444555554
No 397
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=90.77 E-value=1 Score=39.85 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=18.6
Q ss_pred cEEEEEE-eCCCCCcceEEEEeC
Q psy3823 29 QVLVSCT-VDANPQAQYFTWAFN 50 (365)
Q Consensus 29 ~~~l~C~-~~~~p~~~~v~W~~~ 50 (365)
.++|.|. .+..|....++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5899999 556687779999999
No 398
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=90.45 E-value=0.39 Score=34.44 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=25.9
Q ss_pred EEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823 282 SVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316 (365)
Q Consensus 282 s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 316 (365)
..|.|+.++.+|+|.|.-++++..|.. ....++|
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqV 104 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQV 104 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEE
T ss_pred ceEEEeecCcccCceEEEEEEcCCCcE-EEEEEEE
Confidence 359999999999999999999999987 3344444
No 399
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=90.42 E-value=0.9 Score=32.62 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=29.3
Q ss_pred eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823 173 TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210 (365)
Q Consensus 173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v 210 (365)
.+.+|.|+.++..|+|.|.-++.+..|......+.+.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 37899999999999999999999998876655555444
No 400
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=90.35 E-value=1.1 Score=31.48 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=43.1
Q ss_pred CceEEEEecCCcEEEEEEeC-CC----CCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823 18 QQRIYGALRNEQVLVSCTVD-AN----PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 89 (365)
Q Consensus 18 ~~~~~~v~~G~~~~l~C~~~-~~----p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 89 (365)
.+....+..|++++..|... +- ... .+.|..++.. ++..+.... +.+.+.+++.+......-.|-|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~-~I~Wkln~~~-iP~~qy~~i--n~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNAS-QIVWKLNGEK-IPGSQYRVI--NDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STT-CEEEECSSCE-STCGCEEEE--STTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccc-eEEEEECCEE-CChhHccee--CCeEEEEEEccCCCCCceEEEEEE
Confidence 34445578899999999933 22 334 8999999887 877665433 333367888877666656677763
No 401
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=90.11 E-value=0.2 Score=34.41 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.9
Q ss_pred cCccccEEEEEEEEEcCCCCCce
Q psy3823 325 PVAVSHRYVAKLYATNAKGAGPM 347 (365)
Q Consensus 325 ~l~~~~~~~~~~~~~n~~g~s~~ 347 (365)
+|.|+..|.|+|.|.|..|.|++
T Consensus 62 ~L~p~t~Y~~~v~a~~~~g~g~~ 84 (85)
T PF00041_consen 62 GLQPGTTYEFRVRAVNSDGEGPP 84 (85)
T ss_dssp SCCTTSEEEEEEEEEETTEEEEE
T ss_pred cCCCCCEEEEEEEEEeCCcCcCC
Confidence 78999999999999999997764
No 402
>KOG0613|consensus
Probab=88.60 E-value=1.3 Score=45.74 Aligned_cols=82 Identities=11% Similarity=-0.053 Sum_probs=57.3
Q ss_pred eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC-ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL-TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
...+..+++.|...+.+.+..+.|+.++........ ........+...+.|..+...+.+.|.|.|.|..|........
T Consensus 346 a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~ 425 (1205)
T KOG0613|consen 346 ARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAES 425 (1205)
T ss_pred cccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchh
Confidence 566788999999999877766999987653322221 1112233444568888999999999999999999976544444
Q ss_pred EEE
Q psy3823 315 HVV 317 (365)
Q Consensus 315 ~v~ 317 (365)
+|.
T Consensus 426 ~vs 428 (1205)
T KOG0613|consen 426 TVS 428 (1205)
T ss_pred hcc
Confidence 443
No 403
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=87.92 E-value=14 Score=30.47 Aligned_cols=131 Identities=18% Similarity=0.286 Sum_probs=64.6
Q ss_pred ceEEEEeCCCcCCCCCCce-e--EecCC---eEEEEEE-ccCCCCCCeEEEEEEEe-CCCCCc----ccEEEEEEecccc
Q psy3823 43 QYFTWAFNNSGTAPRPLTS-Y--SIQDG---STSVARY-TPTSELEYGTLLCWARN-EQGNQR----TPCTFHVVKAGEC 110 (365)
Q Consensus 43 ~~v~W~~~~~~~l~~~~~~-~--~~~~~---~~~~l~i-~~~~~~d~G~Y~C~a~~-~~~~~~----~~~~l~V~~~~~~ 110 (365)
..++|+.|+.. +...... . ...++ ..++|.+ .+...+..=..+|.+.= ...... ....-.|
T Consensus 7 ~~~~Wf~dg~~-v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~V------ 79 (211)
T PF02124_consen 7 VRFRWFEDGNP-VEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSV------ 79 (211)
T ss_pred EEEEEEECCEe-CCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccce------
Confidence 48999999987 6532211 1 11223 3345555 33333444678998753 222222 2333334
Q ss_pred CCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-CeeEEEeCCeEEeeCCCCceEEe-----eceEEEeeecC
Q psy3823 111 EHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-KKLIWTHNGITISNNASAGRIIT-----NQTLVLQSVTR 184 (365)
Q Consensus 111 ~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~i~W~~~~~~l~~~~~~~~~~~-----~~~l~i~~~~~ 184 (365)
+.+|.+.+... +| ...|.+.=-|.. ..+.|.-++.... ......... .+...|.....
T Consensus 80 ---y~~P~vsv~F~---------~g---~AVC~A~CVP~~~v~l~W~v~d~~~~-~~~~~~~~g~C~~~pglvnirs~~p 143 (211)
T PF02124_consen 80 ---YPKPRVSVRFE---------DG---YAVCTARCVPRGNVTLRWSVGDDPSP-APAATEITGVCAEHPGLVNIRSRRP 143 (211)
T ss_pred ---ecCCEEEEEec---------CC---EEEEEcceeeCCCeEEEEEECCccCC-CCCceeecCcccCCcceeEeecccC
Confidence 67888777532 22 334655433322 4599997665431 111111111 12333333322
Q ss_pred --CCCe--EEEEEEEc
Q psy3823 185 --HSGG--LYACSAIN 196 (365)
Q Consensus 185 --~d~G--~Y~C~~~~ 196 (365)
...| .|+|.+..
T Consensus 144 ls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 144 LSDEDGPVEYTCRLIG 159 (211)
T ss_pred CCccCCceeEEEEEee
Confidence 3335 89999874
No 404
>PHA03283 envelope glycoprotein E; Provisional
Probab=87.49 E-value=9.1 Score=35.83 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=53.1
Q ss_pred eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCC------------eEEEEcCCccCccceecC
Q psy3823 68 STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKP------------SVQIKLGRNLNASVLNEG 135 (365)
Q Consensus 68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p------------~~~~~~~~~~~~~~~~~g 135 (365)
..+.|.|.+++.+++|.|+-..++..+.....+.|+|.....-..+ .+| .+.+. +........|
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~-~Pp~~~pv~P~~h~a~f~v~---nYhS~vf~~G 207 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQT-PPAPLVPQVPARHHTDFHVR---GYHSRVYSPG 207 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCC-CCCCccccCCccCCceEEEe---cceeEEecCC
Confidence 3457999999999999999999987663346677777431110000 011 12221 1244567789
Q ss_pred CcEEEEEEEEecC----CCCeeEEEe
Q psy3823 136 VDIYFDCHIQANP----PYKKLIWTH 157 (365)
Q Consensus 136 ~~v~l~C~~~~~p----~~~~i~W~~ 157 (365)
+++.+.-...... -...|.|+.
T Consensus 208 Dtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 208 DSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred CceeEeEEEeeccCCCCceEEEEEEE
Confidence 9988877666432 223478986
No 405
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=85.12 E-value=1.3 Score=31.11 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=37.6
Q ss_pred cceecCCcEEEEEEEEec----CCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEE
Q psy3823 130 SVLNEGVDIYFDCHIQAN----PPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA 194 (365)
Q Consensus 130 ~~~~~g~~v~l~C~~~~~----p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 194 (365)
..+..|++++..|..... .....|.|..|+..++......+....+.+++.+.....+-.|-|..
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 357889999999988722 23444999998886654332211122356666666655555666653
No 406
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=84.25 E-value=8 Score=26.44 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=22.3
Q ss_pred EEEcCCCcccCeEEEEEE-EcCCccceecEEEEE
Q psy3823 284 ARYTPTSELEYGTLLCWA-RNEQGSQRTPCTFHV 316 (365)
Q Consensus 284 l~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~l~v 316 (365)
........+|+|.+.|.| .+..-.....+.|.|
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 445566679999999999 665555555555444
No 407
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=84.16 E-value=7.3 Score=26.64 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=22.8
Q ss_pred eEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823 44 YFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR 90 (365)
Q Consensus 44 ~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 90 (365)
.+.|+..+.. .. .... .+........|+|.++|.|.
T Consensus 28 ~~~l~~~~~k-~~-------~~~~---~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 28 SLFLENPGKK-SL-------ETKK---LVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEEECSSCE-EE-------EESS---EEEEESBTCGGSEEEEEEEE
T ss_pred hheeeccCcc-cc-------ccce---EEEEecCCCCCCEEEEEEEc
Confidence 6777666554 11 1222 44555666779999999995
No 408
>PHA03112 IL-18 binding protein; Provisional
Probab=84.05 E-value=7.8 Score=29.53 Aligned_cols=78 Identities=13% Similarity=0.263 Sum_probs=46.3
Q ss_pred eecCceEEEEEEEeee-CCCceeEEEeCCC-CCCCCCCc------------eeEeeCCCEEEEEEcCCCcc-cCeEEEEE
Q psy3823 236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNS-DTAPRPLT------------SYSIQDGSTSVARYTPTSEL-EYGTLLCW 300 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~-~~~~~~~~------------~~~~~~~~~s~l~i~~v~~~-d~G~Y~C~ 300 (365)
...++++.|+|.+-+. |.-..+.|..++. ........ .+...++....|.+.+++.+ +.-.++|.
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 4568999999999864 6544589996652 22111111 11122233455666666644 34489998
Q ss_pred EEcCCccceecEE
Q psy3823 301 ARNEQGSQRTPCT 313 (365)
Q Consensus 301 a~n~~g~~~~~~~ 313 (365)
.....|.....+.
T Consensus 115 L~D~~~~~k~~ii 127 (141)
T PHA03112 115 LMDLDGPIKKSII 127 (141)
T ss_pred EecCCchhhHHhH
Confidence 8888776655443
No 409
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=83.09 E-value=3.4 Score=38.52 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=15.2
Q ss_pred eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeec-ccc---cCCCCc-----eecCccceeeeecCceEEE
Q psy3823 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNL-IFN---SIDEPV-----CKQSQQRIYGALRNEQVLV 244 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~-~~~---~~~~p~-----~~~~~~~~~~~~~g~~~~l 244 (365)
.+.|.|.+++..|+|.|+-...+..+......+.|.|...... ... .+..|. +............|+++.|
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 4679999999999999999998777766555677777632110 000 001111 1111222233678999998
Q ss_pred EEEEeeeCCC--c---eeEEEeC
Q psy3823 245 SCTVDANPQA--Q---YFTWAFN 262 (365)
Q Consensus 245 ~C~~~~~p~~--~---~~~W~~~ 262 (365)
.-.+...... . .+.|++-
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEEe
Confidence 8888654332 1 6999864
No 410
>PHA03286 envelope glycoprotein E; Provisional
Probab=82.54 E-value=41 Score=31.10 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=54.1
Q ss_pred eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeee--e-ecccccCCCCc-----eecCccceeeeecCceEEEE
Q psy3823 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKM--V-NLIFNSIDEPV-----CKQSQQRIYGALRNEQVLVS 245 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~--~-~~~~~~~~~p~-----~~~~~~~~~~~~~g~~~~l~ 245 (365)
.+.|.|.+++.+++|.|+--..|..+......+.|.|... . ++..+.+..|. +............|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 3679999999999999999998877776656677777421 1 11111111221 11222223336789999877
Q ss_pred EEEeee--CCCc--eeEEEeC
Q psy3823 246 CTVDAN--PQAQ--YFTWAFN 262 (365)
Q Consensus 246 C~~~~~--p~~~--~~~W~~~ 262 (365)
-..... ..+- .+.|++-
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEeecccCCCceEEEEEEEe
Confidence 766522 1111 6999864
No 411
>PHA03283 envelope glycoprotein E; Provisional
Probab=81.02 E-value=50 Score=31.17 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=51.2
Q ss_pred eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeee-----cccccCCCC-----ceecCccceeeeecCceEE
Q psy3823 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVN-----LIFNSIDEP-----VCKQSQQRIYGALRNEQVL 243 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~-----~~~~~~~~p-----~~~~~~~~~~~~~~g~~~~ 243 (365)
.+.|.|.+++.+++|.|+--..+..+ .....+.|+|..+.. |.-..+..| .+....-.......|+++.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 46799999999999999998887655 443556677763111 000000011 1111121222267899998
Q ss_pred EEEEEeeeC-CCc---eeEEEeC
Q psy3823 244 VSCTVDANP-QAQ---YFTWAFN 262 (365)
Q Consensus 244 l~C~~~~~p-~~~---~~~W~~~ 262 (365)
+.-...... .+. .+.|++.
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEEe
Confidence 877665432 221 6999864
No 412
>PHA03282 envelope glycoprotein E; Provisional
Probab=80.56 E-value=49 Score=30.75 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=29.0
Q ss_pred eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCc-ccEEEEEe
Q psy3823 170 RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS-TPFDLNIN 211 (365)
Q Consensus 170 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s-~~~~l~v~ 211 (365)
....|.+|.|.+++..|+|.|+-.+.+....... ..+.|.|.
T Consensus 119 vs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 119 VAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred eeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 4455789999999999999999987654333222 33445553
No 413
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=79.05 E-value=10 Score=26.70 Aligned_cols=73 Identities=18% Similarity=0.316 Sum_probs=45.1
Q ss_pred ceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823 240 EQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315 (365)
Q Consensus 240 ~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 315 (365)
+.+.-.|.. .|.|++. |.|.-+-.... +.. .....+|+ .+.+.+-+....|.-..+|.+....-+...++.|.
T Consensus 21 ~v~VA~CiSa~GrPpa~-ItW~t~l~G~~-etq-~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 21 KMLVATCVSANGKPPSV-VRWDTRLKGEA-EFQ-EIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred eEEEEEEEcCCCcCCcE-eEEEccCCCce-eee-eeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 346678985 6788887 99985422111 000 01122333 35566667777788899999998766666666654
No 414
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=78.45 E-value=7.1 Score=36.44 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=14.1
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCC-----------eEEEEcCCccCccceecCCc
Q psy3823 70 SVARYTPTSELEYGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKP-----------SVQIKLGRNLNASVLNEGVD 137 (365)
Q Consensus 70 ~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p-----------~~~~~~~~~~~~~~~~~g~~ 137 (365)
+.|.|.+++.+|+|.|+-..++..+... ..+.|.|....... +...| .+.+.. ........|++
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~-~~p~p~~p~~p~~~~~~~~~~~---~~s~vf~~Gdt 164 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDP-RTPPPHHPIVPHRHGATFHLKN---YHSHVFSPGDT 164 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE-----SEEE--TT--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCC-CCCCCCCCCCCcccccEEEEec---cceEEecCCCc
Confidence 4699999999999999999987666554 66777775433320 01111 122221 23345678999
Q ss_pred EEEEEEEEe--cC-C--CCeeEEEe
Q psy3823 138 IYFDCHIQA--NP-P--YKKLIWTH 157 (365)
Q Consensus 138 v~l~C~~~~--~p-~--~~~i~W~~ 157 (365)
+.+.-.+.. .. . ...|.||.
T Consensus 165 f~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 165 FHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp EE---EEEEEESSS--EEEEEEEEE
T ss_pred EEEeEEEEeccCCCCCeeEEEEEEE
Confidence 888876663 22 2 23477986
No 415
>KOG1026|consensus
Probab=75.75 E-value=8.6 Score=38.14 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=82.4
Q ss_pred EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEE
Q psy3823 22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCT 101 (365)
Q Consensus 22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~ 101 (365)
..+..|..+++.|...+.|.+ ...|+.+... ..........-.. ....+. +++|.+.+..+.....+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp-~~~~~~~~~~-~~~~~~~~~~c~~--~~~~~~--------~~~c~~E~~~~~~~~~v~ 269 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVP-CHYWFPNCLA-SSNTNQTSSLCRS--ECEVLE--------NDLCIAENAVARSNPSIL 269 (774)
T ss_pred hhhcccchheeeeecccCCCc-ceeeeccccc-ccCCCcccccccc--cceeee--------chhhHHHHhhhhcCceee
Confidence 556789999999998899999 9999988766 4332221111110 011111 188999998888876666
Q ss_pred EEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE---ecCCCCeeEEEeCCeEEeeCCCCceEEee--ce
Q psy3823 102 FHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ---ANPPYKKLIWTHNGITISNNASAGRIITN--QT 176 (365)
Q Consensus 102 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~---~~p~~~~i~W~~~~~~l~~~~~~~~~~~~--~~ 176 (365)
+.+ ..++...... . ..++ .-.|... +.+.+. ..|..++.-+............ .-
T Consensus 270 ~~~---------~~p~~~~~~~-~-------~~~~--~~~C~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~t~s~~~~C 329 (774)
T KOG1026|consen 270 LVV---------DLPKAEVLLC-S-------PLSD--HHNCIPIGITANPGPA-LHWCYNGSGLNYRGTVCVTKSGKEQC 329 (774)
T ss_pred eEE---------ecccccccCC-C-------Cccc--cCceeeeeccCCCCCc-eeeeecCccceEecccccccccCcCC
Confidence 666 2232211111 0 0111 2233322 445555 7788877655432211111111 11
Q ss_pred EEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823 177 LVLQSVTRHSGGLYACSAINSQGEGG 202 (365)
Q Consensus 177 l~i~~~~~~d~G~Y~C~~~~~~~~~~ 202 (365)
+........+.|.|+|.+.+..|...
T Consensus 330 ~~~~~~~h~~~~~~~~~~e~~~g~~~ 355 (774)
T KOG1026|consen 330 LPWNDPPHSHNGNYTLFPELPGGKNY 355 (774)
T ss_pred cccCcCcccccCcceeeecccCcccc
Confidence 22222345678999999998877543
No 416
>PHA03189 UL14 tegument protein; Provisional
Probab=75.12 E-value=19 Score=31.21 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=15.8
Q ss_pred cCCCCCCeEEEEEEEeCCCCC
Q psy3823 76 PTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 76 ~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
++..+.+|.|.|...|.....
T Consensus 139 ~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEEecccceEEEEecccccee
Confidence 556678899999998865443
No 417
>KOG1026|consensus
Probab=74.07 E-value=9.1 Score=38.00 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=84.3
Q ss_pred ceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210 (365)
Q Consensus 131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v 210 (365)
.+..|..+++.|...+.+.+. +.|+.++............-......+. ++.|.+.+..+... ..+.+.+
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~-~~~~~~~~~~~~~~~~~~~c~~~~~~~~--------~~~c~~E~~~~~~~-~~v~~~~ 272 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPC-HYWFPNCLASSNTNQTSSLCRSECEVLE--------NDLCIAENAVARSN-PSILLVV 272 (774)
T ss_pred hhcccchheeeeecccCCCcc-eeeecccccccCCCcccccccccceeee--------chhhHHHHhhhhcC-ceeeeEE
Confidence 456688999999999988888 8899876554432211111111111111 18899988888766 4445555
Q ss_pred eeeeecccccCCCCceecCccceeeeecCceEEEEEEEe---eeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEc
Q psy3823 211 NKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD---ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT 287 (365)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~---~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~ 287 (365)
. .++........ . ++ .-.|... +.|.+. ..|..++........... ...+...-+...
T Consensus 273 ~----------~p~~~~~~~~~---~--~~--~~~C~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-t~s~~~~C~~~~ 333 (774)
T KOG1026|consen 273 D----------LPKAEVLLCSP---L--SD--HHNCIPIGITANPGPA-LHWCYNGSGLNYRGTVCV-TKSGKEQCLPWN 333 (774)
T ss_pred e----------cccccccCCCC---c--cc--cCceeeeeccCCCCCc-eeeeecCccceEeccccc-ccccCcCCcccC
Confidence 4 22221111111 0 01 1224433 345555 888877654221111110 011100112222
Q ss_pred CCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823 288 PTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG 320 (365)
Q Consensus 288 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 320 (365)
..+..+.|.|+|.+.+..|.........+...+
T Consensus 334 ~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 334 DPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cCcccccCcceeeecccCccccccCcCccccCC
Confidence 335567899999999998876655555554433
No 418
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=72.62 E-value=30 Score=24.30 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=46.1
Q ss_pred CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823 17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ 96 (365)
Q Consensus 17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~ 96 (365)
..+....|..|+++.+.|... -|.+..+-|.-. +.. ........=..+.+.+++. | ....|.+.=...+.
T Consensus 8 v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~----L~k---~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~ 77 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETS----LSK---TELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQS 77 (91)
T ss_dssp EESSEEEEETTEEEEEEEEES-SSS-SEEEEESS----SEE---EEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEE
T ss_pred EECCccEECCCCCEEEEEcCC-CCCCCcceEEEe----cCC---cccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEE
Confidence 446677789999999999963 344424444321 111 1111112233677888886 4 57789988544344
Q ss_pred cccEEEEE
Q psy3823 97 RTPCTFHV 104 (365)
Q Consensus 97 ~~~~~l~V 104 (365)
..+..|+|
T Consensus 78 ~~~~~ItV 85 (91)
T PF03921_consen 78 SASANITV 85 (91)
T ss_dssp EEEEEEEE
T ss_pred EeEEeeEE
Confidence 48888888
No 419
>PHA03112 IL-18 binding protein; Provisional
Probab=71.12 E-value=28 Score=26.62 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=38.6
Q ss_pred ecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCC-CCC------------ceeEecCCeEEEEEEccCCCC-CCeEEEEEE
Q psy3823 25 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAP-RPL------------TSYSIQDGSTSVARYTPTSEL-EYGTLLCWA 89 (365)
Q Consensus 25 ~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~-~~~------------~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a 89 (365)
.+|+++.|+|..-++ |...-+.|..++..... +.. ......+.....|++.+++.. ..-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 579999999995544 65448899977631021 110 001113344445666666533 333677776
Q ss_pred EeCCC
Q psy3823 90 RNEQG 94 (365)
Q Consensus 90 ~~~~~ 94 (365)
....+
T Consensus 116 ~D~~~ 120 (141)
T PHA03112 116 MDLDG 120 (141)
T ss_pred ecCCc
Confidence 54443
No 420
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=66.73 E-value=32 Score=22.27 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=32.6
Q ss_pred EEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823 139 YFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211 (365)
Q Consensus 139 ~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~ 211 (365)
+|.|.... ... +.||-||..+-. ....++.+..+ .++|+|.-. .....++.++-.
T Consensus 2 tltC~s~~--sLP-iswYcN~TRLlR-------lt~~Tlt~~~l----tcNFtCV~q----SGh~hSiWItW~ 56 (71)
T PF11049_consen 2 TLTCPSNA--SLP-ISWYCNGTRLLR-------LTQQTLTVVTL----TCNFTCVGQ----SGHRHSIWITWY 56 (71)
T ss_pred ceecCCCC--CCc-ccEEECCceeee-------ecCCeEeeeee----eEEeeecCC----CCCCceEEEEEc
Confidence 46776433 233 899999887742 22345555444 578888633 233356777766
No 421
>PHA03286 envelope glycoprotein E; Provisional
Probab=65.39 E-value=81 Score=29.24 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=52.3
Q ss_pred eEEEEEEccCCCCCCeEEEEEEEeCCCCCc-ccEEEEEEeccc--cCC---CCCCCe--EEEEcCCccCccceecCCcEE
Q psy3823 68 STSVARYTPTSELEYGTLLCWARNEQGNQR-TPCTFHVVKAGE--CEH---PVDKPS--VQIKLGRNLNASVLNEGVDIY 139 (365)
Q Consensus 68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~--~~~---~~~~p~--~~~~~~~~~~~~~~~~g~~v~ 139 (365)
..+.|.|.+++.+++|.|+-..++..+... ..+.|+|...+. +.. |..|+. +.+... +........|+++.
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~-ny~S~lF~~GDTF~ 203 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLK-NFKAFLYNVGDTVD 203 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEe-cccceEecCCCeEE
Confidence 445799999999999999999998766655 667777742211 110 111111 111111 12334567899888
Q ss_pred EEEEEEe----cCCCCeeEEEe
Q psy3823 140 FDCHIQA----NPPYKKLIWTH 157 (365)
Q Consensus 140 l~C~~~~----~p~~~~i~W~~ 157 (365)
+.-.... .+-...|.|+.
T Consensus 204 vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 204 ASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEEeecccCCCceEEEEEEE
Confidence 7766552 12223377876
No 422
>PHA03052 Hypothetical protein; Provisional
Probab=64.40 E-value=21 Score=23.34 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=24.9
Q ss_pred eEEEEecCCcEEEEEEeC-CCC--CcceEEEEeCCCc
Q psy3823 20 RIYGALRNEQVLVSCTVD-ANP--QAQYFTWAFNNSG 53 (365)
Q Consensus 20 ~~~~v~~G~~~~l~C~~~-~~p--~~~~v~W~~~~~~ 53 (365)
..+.+..|..++|.|++. +.| .+ .+.|.-|+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a-~V~W~~N~~~ 40 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDA-DVFWISNGMY 40 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcce-EEEEEeCCcE
Confidence 556788899999999932 333 34 8999988876
No 423
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=60.45 E-value=11 Score=24.31 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=17.3
Q ss_pred cCccccEEEEEEEEEcCCCC
Q psy3823 325 PVAVSHRYVAKLYATNAKGA 344 (365)
Q Consensus 325 ~l~~~~~~~~~~~~~n~~g~ 344 (365)
+|.|+..|.++|.+.+..|.
T Consensus 63 ~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 63 GLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred CcCCCCEEEEEEEEEcccCC
Confidence 67999999999999987664
No 424
>PHA03240 envelope glycoprotein M; Provisional
Probab=60.11 E-value=16 Score=29.85 Aligned_cols=83 Identities=8% Similarity=0.010 Sum_probs=45.8
Q ss_pred EEEEecCCcEEEEEEeCCCCCcceEEEEe-------CCCcCCC------C---CC-c--------eeEecCCeEEEEEEc
Q psy3823 21 IYGALRNEQVLVSCTVDANPQAQYFTWAF-------NNSGTAP------R---PL-T--------SYSIQDGSTSVARYT 75 (365)
Q Consensus 21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-------~~~~~l~------~---~~-~--------~~~~~~~~~~~l~i~ 75 (365)
...+.+|++|+|.-.-...|.- .+.||+ ++..... . +. . ....-.-..++|.|.
T Consensus 32 evt~r~G~nVTLga~~~lhpgq-~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQ-KAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCcccCCCCC-EEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 4567889999998764444666 999999 2221000 0 00 0 001111133478888
Q ss_pred cCCCCCCeEEEEEEEeCCCCCc----ccEEEEE
Q psy3823 76 PTSELEYGTLLCWARNEQGNQR----TPCTFHV 104 (365)
Q Consensus 76 ~~~~~d~G~Y~C~a~~~~~~~~----~~~~l~V 104 (365)
++..+|.|+|.-......+..+ .=++|.+
T Consensus 111 ~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~ 143 (258)
T PHA03240 111 HLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLIL 143 (258)
T ss_pred EEeecCcchhhhccCCCCCCcCCCcceeeeEee
Confidence 8888899988544333334332 2355555
No 425
>PHA03281 envelope glycoprotein E; Provisional
Probab=56.37 E-value=1.9e+02 Score=27.71 Aligned_cols=89 Identities=10% Similarity=0.112 Sum_probs=50.2
Q ss_pred eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeee---cccccCCC---CceecCccceeeeecCceEEEEEE
Q psy3823 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVN---LIFNSIDE---PVCKQSQQRIYGALRNEQVLVSCT 247 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~---~~~~~~~~---p~~~~~~~~~~~~~~g~~~~l~C~ 247 (365)
.+.|.|.+++..++|.|+--.....|......+.|+|..... +.-....+ ..+....-......+|+++.+.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 468999999999999999887755554442355666653210 00000000 011111111222668999888877
Q ss_pred Eeee--CCCc--eeEEEeC
Q psy3823 248 VDAN--PQAQ--YFTWAFN 262 (365)
Q Consensus 248 ~~~~--p~~~--~~~W~~~ 262 (365)
+... ..+- .+.|++-
T Consensus 377 L~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred EeeeccCCCceeEEEEEEe
Confidence 7543 2221 6999864
No 426
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=55.72 E-value=15 Score=24.57 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.0
Q ss_pred cCccccEEEEEEEEEcCCCCCceee
Q psy3823 325 PVAVSHRYVAKLYATNAKGAGPMVL 349 (365)
Q Consensus 325 ~l~~~~~~~~~~~~~n~~g~s~~~~ 349 (365)
+|.|+..|.+++.+.+..|.|.+..
T Consensus 63 ~l~p~~~Y~~~v~a~~~~~~~~~s~ 87 (93)
T cd00063 63 GLKPGTEYEFRVRAVNGGGESPPSE 87 (93)
T ss_pred cccCCCEEEEEEEEECCCccCCCcc
Confidence 5899999999999998888776543
No 427
>PHA03052 Hypothetical protein; Provisional
Probab=52.73 E-value=42 Score=21.95 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=22.5
Q ss_pred eeecCceEEEEEEEeeeCCC-c-eeEEEeCCCC
Q psy3823 235 GALRNEQVLVSCTVDANPQA-Q-YFTWAFNNSD 265 (365)
Q Consensus 235 ~~~~g~~~~l~C~~~~~p~~-~-~~~W~~~~~~ 265 (365)
.+..|..++|.|.+.-.++. . .+.|..|+..
T Consensus 8 ~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~ 40 (69)
T PHA03052 8 VTSLGSNLTITCKVSLRPPTTDADVFWISNGMY 40 (69)
T ss_pred EEEccCCceEeEEEEecCCCcceEEEEEeCCcE
Confidence 37889999999999643322 2 5888887753
No 428
>PHA03240 envelope glycoprotein M; Provisional
Probab=52.70 E-value=35 Score=27.99 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.2
Q ss_pred eceEEEeeecCCCCeEEEEE
Q psy3823 174 NQTLVLQSVTRHSGGLYACS 193 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~ 193 (365)
+++|.|..+...|.|+|.-.
T Consensus 104 NstL~i~~vn~sd~~nYcr~ 123 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCRK 123 (258)
T ss_pred cceEEEEEEeecCcchhhhc
Confidence 78999999999999998543
No 429
>PHA03189 UL14 tegument protein; Provisional
Probab=50.42 E-value=66 Score=28.10 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=14.3
Q ss_pred CCCcccCeEEEEEEEcCC
Q psy3823 288 PTSELEYGTLLCWARNEQ 305 (365)
Q Consensus 288 ~v~~~d~G~Y~C~a~n~~ 305 (365)
++..+.+|.|.|...|..
T Consensus 139 ~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 139 RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEecccceEEEEecccc
Confidence 355678999999998854
No 430
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=46.57 E-value=7.1 Score=36.58 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred eecCceEEEEEEEeeeC---CCceeEEEe-----CC-CCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEE--EEEcC
Q psy3823 236 ALRNEQVLVSCTVDANP---QAQYFTWAF-----NN-SDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC--WARNE 304 (365)
Q Consensus 236 ~~~g~~~~l~C~~~~~p---~~~~~~W~~-----~~-~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C--~a~n~ 304 (365)
+..++.+.|.....+.+ ....+.|.. .. ....................|.|..-..+..+.|.. .|.+.
T Consensus 205 vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~ 284 (440)
T PF02010_consen 205 VNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDS 284 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66777777666655432 222488987 10 000000000111111223346666554555556655 55555
Q ss_pred Cccc-eecEEEEEEcCcc---ccc
Q psy3823 305 QGSQ-RTPCTFHVVKAGE---CEH 324 (365)
Q Consensus 305 ~g~~-~~~~~l~v~~~~~---c~~ 324 (365)
.+.. ...+.+.+..++. |.+
T Consensus 285 ~~~~~~a~~~~~~n~pP~~g~c~v 308 (440)
T PF02010_consen 285 SGSSGSASISFTVNAPPSGGSCSV 308 (440)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 4443 4556666654443 555
No 431
>KOG0200|consensus
Probab=44.11 E-value=2.4e+02 Score=27.90 Aligned_cols=124 Identities=20% Similarity=0.276 Sum_probs=64.1
Q ss_pred eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC
Q psy3823 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253 (365)
Q Consensus 174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 253 (365)
...+.+..+...+.|.|+|.+.+ ....+.+. .. .. ..+.+............+....+ +...+.
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~-~~---~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 75 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN-----INLIISLD-DI---VI----HRPILLAGENANPNTVVTVGVPL---AFSIPQ 75 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec-----CceeeEee-cc---cC----cccccccCCCCCcceeeccccee---eeecCC
Confidence 45777888889999999999998 11111222 10 00 11111111111111334444544 333344
Q ss_pred CceeEEEeCCCCCC----CCCCce--e--------EeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823 254 AQYFTWAFNNSDTA----PRPLTS--Y--------SIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF 314 (365)
Q Consensus 254 ~~~~~W~~~~~~~~----~~~~~~--~--------~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 314 (365)
+. +.|........ ...... . ...+.....+.+.++...+.|.|.|...+..+.......+
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (609)
T KOG0200|consen 76 PF-IKWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFL 149 (609)
T ss_pred Cc-ceeeeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcccccccceEE
Confidence 44 77776442110 000000 0 0114456678899999999999999998744443333333
No 432
>PHA03281 envelope glycoprotein E; Provisional
Probab=41.62 E-value=1.8e+02 Score=27.80 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=51.1
Q ss_pred EEEEEEccCCCCCCeEEEEEEEeCCCCCc-ccEEEEEEeccccCCC--CCC-----CeEEEEcCCccCccceecCCcEEE
Q psy3823 69 TSVARYTPTSELEYGTLLCWARNEQGNQR-TPCTFHVVKAGECEHP--VDK-----PSVQIKLGRNLNASVLNEGVDIYF 140 (365)
Q Consensus 69 ~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~--~~~-----p~~~~~~~~~~~~~~~~~g~~v~l 140 (365)
.+.|.|.+++.+++|.|+-..+...|... ..+.|+|........| ... ..+.+. +........|+++.+
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vk---nYhShVF~pGDTFsl 373 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMW---HYHSHVFSVGDTFSL 373 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEe---ccceeEecCCCeeEE
Confidence 45789999999999999998886655544 4677777432211111 111 111221 123445678998888
Q ss_pred EEEEEec----CCCCeeEEEe
Q psy3823 141 DCHIQAN----PPYKKLIWTH 157 (365)
Q Consensus 141 ~C~~~~~----p~~~~i~W~~ 157 (365)
.-..... +-...+.|+.
T Consensus 374 ~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 374 AMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEEEeeeccCCCceeEEEEEE
Confidence 7766532 2233477886
No 433
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=37.52 E-value=1.2e+02 Score=19.81 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=28.5
Q ss_pred eeEEEeCCeEEeeCCCCceEEe-eceEEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823 152 KLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLYACSAINSQGEGG 202 (365)
Q Consensus 152 ~i~W~~~~~~l~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 202 (365)
...|++++..+....-. +... =.+..-........|.+...+....|...
T Consensus 8 ~H~W~~~g~~~~~i~l~-i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l 58 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLP-ISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVL 58 (66)
T ss_pred EEEEEECCEEEEEEEEe-ccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEE
Confidence 36799998876531100 0000 12233344455788999999988777543
No 434
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=36.91 E-value=1.3e+02 Score=20.91 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=12.4
Q ss_pred ecCCcEEEEEEEEecCCCCeeEEEeC
Q psy3823 133 NEGVDIYFDCHIQANPPYKKLIWTHN 158 (365)
Q Consensus 133 ~~g~~v~l~C~~~~~p~~~~i~W~~~ 158 (365)
.......|.|.+.+......+.--++
T Consensus 13 vs~~etSL~Ci~s~W~s~esitigrd 38 (96)
T PF10430_consen 13 VSNSETSLTCIASDWSSHESITIGRD 38 (96)
T ss_dssp E-SS-EEEEEEE-SS--SS--EEEE-
T ss_pred cccCceeEEEEecCCcCCCcEEeccc
Confidence 34445599999887655555666554
No 435
>KOG4802|consensus
Probab=34.84 E-value=32 Score=31.36 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=17.6
Q ss_pred cCccccEEEEEEEEEcCCC
Q psy3823 325 PVAVSHRYVAKLYATNAKG 343 (365)
Q Consensus 325 ~l~~~~~~~~~~~~~n~~g 343 (365)
++.||..|.||+.|+|..|
T Consensus 215 ~~rPgRwyefrvaavn~~G 233 (516)
T KOG4802|consen 215 DMRPGRWYEFRVAAVNAYG 233 (516)
T ss_pred ecCcceeEEEEEeeeeccc
Confidence 6799999999999999986
No 436
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=33.75 E-value=1.6e+02 Score=20.26 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=34.2
Q ss_pred cEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823 137 DIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG 202 (365)
Q Consensus 137 ~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 202 (365)
...|.+.+.+. ... +.||.||..+...... ..+.+ .....|.|+-.+.+..|...
T Consensus 31 ~~~l~l~a~~~-~~~-~~W~vdg~~~g~~~~~------~~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGP-VYWFVDGEPLGTTQPG------HQLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCc-EEEEECCEEcccCCCC------CeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 45555555554 334 9999999998432221 12222 23567999999988887554
No 437
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=33.70 E-value=1.3e+02 Score=19.32 Aligned_cols=28 Identities=11% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEecCCcEEEEEEeCCCCCcceEEEEeCC
Q psy3823 23 GALRNEQVLVSCTVDANPQAQYFTWAFNN 51 (365)
Q Consensus 23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~ 51 (365)
.+..|+.+.|.... .......+.|..++
T Consensus 7 ~~~~g~~v~f~~~~-~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASS-SDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETT-TTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEc-cCCCCeEEEEEECC
Confidence 35679999999987 33444499999988
No 438
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=32.71 E-value=1.7e+02 Score=20.16 Aligned_cols=56 Identities=7% Similarity=0.055 Sum_probs=34.0
Q ss_pred eEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823 241 QVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT 310 (365)
Q Consensus 241 ~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 310 (365)
...|...+.+. .+. +.|+.||...... .....+.+. ....|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~~~-~~W~vdg~~~g~~---------~~~~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGP-VYWFVDGEPLGTT---------QPGHQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCc-EEEEECCEEcccC---------CCCCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 45556666555 345 9999998744111 111123333 24679999999888887643
No 439
>PHA03282 envelope glycoprotein E; Provisional
Probab=31.19 E-value=73 Score=29.71 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.5
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823 71 VARYTPTSELEYGTLLCWARNEQGN 95 (365)
Q Consensus 71 ~l~i~~~~~~d~G~Y~C~a~~~~~~ 95 (365)
.|+|.|+..+++|.|.|++.....-
T Consensus 334 dL~F~nAp~saSGLYVfVl~yNGHV 358 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYVNGHV 358 (540)
T ss_pred ceEecCCCcccCceEEEEEEECCee
Confidence 7999999999999999999865443
No 440
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=29.82 E-value=1.6e+02 Score=19.08 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=11.2
Q ss_pred ecCCcEEEEEEEEecCCCCeeEEEe
Q psy3823 133 NEGVDIYFDCHIQANPPYKKLIWTH 157 (365)
Q Consensus 133 ~~g~~v~l~C~~~~~p~~~~i~W~~ 157 (365)
..|+.++|.= |+...+.|++
T Consensus 3 ~~G~N~TL~G-----p~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTLVG-----PPDGPVTWYK 22 (63)
T ss_pred eEcCcEEEeC-----CCCCceEEEE
Confidence 4566665543 3323399993
No 441
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=25.90 E-value=1.8e+02 Score=23.01 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=27.1
Q ss_pred EEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823 70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104 (365)
Q Consensus 70 ~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V 104 (365)
-.|.|.+.+.+|+|.|.-.++-.......-+.+.+
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 36999999999999999999877655545555544
No 442
>PHA02935 Hypothetical protein; Provisional
Probab=23.46 E-value=4.1e+02 Score=21.64 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=33.7
Q ss_pred eEEEeCCeEEeeCCCCc-----------eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823 153 LIWTHNGITISNNASAG-----------RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI 210 (365)
Q Consensus 153 i~W~~~~~~l~~~~~~~-----------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v 210 (365)
-.||.+.+.+......+ ...+-.-|.|+.++-+|+|.|.-..+-..|.....+.++.|
T Consensus 69 tswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisv 137 (349)
T PHA02935 69 TSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISV 137 (349)
T ss_pred ceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEE
Confidence 45999888775433221 11112346677888899999987666555543333333333
No 443
>COG5475 Uncharacterized small protein [Function unknown]
Probab=22.18 E-value=1.6e+02 Score=18.47 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=18.1
Q ss_pred EEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823 284 ARYTPTSELEYGTLLCWARNEQGSQRT 310 (365)
Q Consensus 284 l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 310 (365)
+++...+. .|.|.|.-.+..|..+.
T Consensus 20 Mtvs~~ss--~Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 20 MTVSGYSS--DGMYECRWFDGYGVKRE 44 (60)
T ss_pred EEEecccc--CCeEEEEEecCCCcccc
Confidence 55665532 39999999999986543
No 444
>KOG0200|consensus
Probab=20.09 E-value=8.6e+02 Score=24.08 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=18.4
Q ss_pred EEEEccCCCCCCeEEEEEEEe
Q psy3823 71 VARYTPTSELEYGTLLCWARN 91 (365)
Q Consensus 71 ~l~i~~~~~~d~G~Y~C~a~~ 91 (365)
.+.+..+...+.|.|+|.+.+
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred eEEEEEEEecCCccEEEEEec
Confidence 677778888899999999988
Done!