RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3823
(365 letters)
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 99.4 bits (247), Expect = 4e-23
Identities = 56/316 (17%), Positives = 92/316 (29%), Gaps = 53/316 (16%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY-----TPTS 78
E+ V+CT+ + Y TW N S G + R +
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKREN-SQTKLQEKYNSWHHGDFNYERQATLTISSAR 281
Query: 79 ELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI 138
+ G +C+A N G+ T VV DK + I N V N+G ++
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVV---------DKGFINIFPMINTTVFV-NDGENV 331
Query: 139 YFDCHIQANPPYKKLIWTHNGITISNNA-------SAGRIITNQTLVLQSVTRHSGGLYA 191
+A P + W + T ++ + I L L + GG Y
Sbjct: 332 DLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYT 391
Query: 192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN 251
NS N+ N+ +P I R ++ C
Sbjct: 392 FLVSNSDVN---------AAIAFNVYVNT--KP-------EILTYDRLVNGMLQCVAAGF 433
Query: 252 PQAQYFTWAFN-----NSDTAPRPLTSYSIQDGSTSVARYTPTSELE------YGTLLCW 300
P+ W F + P+ ++ + S ++ GT+ C
Sbjct: 434 PEPT-IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECK 492
Query: 301 ARNEQGSQRTPCTFHV 316
A N+ G F
Sbjct: 493 AYNDVGKTSAYFNFAF 508
Score = 62.8 bits (152), Expect = 5e-11
Identities = 45/304 (14%), Positives = 79/304 (25%), Gaps = 51/304 (16%)
Query: 26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTS-VARYTPTSELEYG 83
+++ + CT W F + + + + +YT
Sbjct: 50 VGDEIRLLCTDPGFV-----KWTFEILDETNENKQNEWITEKAEATNTGKYT-------- 96
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
C ++ N V + E D C
Sbjct: 97 ---CTNKHGLSNSIY------VFVRDPAKLFLVDRSL----------YGKEDNDTLVRCP 137
Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTR-HSGGLYACSAINSQGE 200
+ + G + + R I ++++SV R + CS
Sbjct: 138 LTDPEVTNYSLKGCQGKPLPKD---LRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194
Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
S F L + + + Y E+ V+CT+ + Y TW
Sbjct: 195 VLSEKFILKVRP-------AFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWK 247
Query: 261 FNNSDTAPRPLTSYSIQDGSTSVARYT----PTSELEYGTLLCWARNEQGSQRTPCTFHV 316
NS T + + + T + G +C+A N GS T V
Sbjct: 248 RENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 307
Query: 317 VKAG 320
V G
Sbjct: 308 VDKG 311
Score = 54.7 bits (131), Expect = 2e-08
Identities = 37/219 (16%), Positives = 58/219 (26%), Gaps = 51/219 (23%)
Query: 17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQDGSTSVARYT 75
E V + +A P+ ++ W + N R T + S + +
Sbjct: 318 MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN-----RTFTDKWEDYPKSENESNIR 372
Query: 76 PTSEL--------EYGTLLCWARNEQGNQRTPCTFHV-VKAGECEHPVDKPSVQIKLGRN 126
SEL E GT N N F+V V KP +
Sbjct: 373 YVSELHLTRLKGTEGGTYTFLVSNSDVNAAI--AFNVYVNT--------KPEI------- 415
Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT---------- 176
+ V+ C P + W T +++ + QT
Sbjct: 416 ---LTYDRLVNGMLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGK 471
Query: 177 ----LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
+ S G C A N G+ S F+
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGK-TSAYFNFAFK 509
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 98.3 bits (244), Expect = 1e-22
Identities = 50/339 (14%), Positives = 91/339 (26%), Gaps = 63/339 (18%)
Query: 24 ALRNEQVLVSCTVDANPQAQY-FTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE- 81
E+++++CT F W + +S + L + ++ S S S L
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM-KKFLSTLTI 294
Query: 82 -------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNE 134
G C A + ++ V +KP V G
Sbjct: 295 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVH---------EKPFVAFGSGMESLVEA-TV 344
Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA 194
G + PP + + W NGI + +N I L + V+ G Y
Sbjct: 345 GERVRIPAKYLGYPPPE-IKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYTVIL 400
Query: 195 INSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA 254
N + + +V+L+ + K + ++CTV A P
Sbjct: 401 TNPISK-------EKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453
Query: 255 QYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEY-------------------- 294
+ W + + + + + +
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513
Query: 295 ------------GTLLCWARNEQGSQRTPCTFHVVKAGE 321
C A N+ G +FHV + E
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPE 552
Score = 85.2 bits (210), Expect = 3e-18
Identities = 34/302 (11%), Positives = 76/302 (25%), Gaps = 33/302 (10%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT--PTSELEYGT 84
N + ++C + W + N+ + + T + G
Sbjct: 46 NTTLQITCRGQRDL-----DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGA 100
Query: 85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
C+ R ++ D+ V N+ + C
Sbjct: 101 YKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVY--------ITENKNKTVVIPCLG 152
Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
+ L + + + + + + S G+ C A + S
Sbjct: 153 SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSI 212
Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQY-FTWAFNN 263
+ ++ S E+++++CT F W + +
Sbjct: 213 MY--------IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 264
Query: 264 SDTAPRPLTSYSIQDGSTSVARYTPTSELE--------YGTLLCWARNEQGSQRTPCTFH 315
S + L + ++ S S S L G C A + +++
Sbjct: 265 SKHQHKKLVNRDLKTQSGSEM-KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 323
Query: 316 VV 317
V
Sbjct: 324 VH 325
Score = 79.0 bits (194), Expect = 3e-16
Identities = 47/321 (14%), Positives = 87/321 (27%), Gaps = 45/321 (14%)
Query: 11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS 70
V Q +N+ V++ C + + S
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPE-KRFVPDGNRISWDSKKG- 184
Query: 71 VARYTPTSELEY-GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
P+ + Y G + C A+ + ++ VV V PS I+L
Sbjct: 185 --FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL------ 236
Query: 130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----------TLV 178
+ G + +C + W + + R + Q TL
Sbjct: 237 ---SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 293
Query: 179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR 238
+ VTR GLY C+A + + + + + A
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMT---------KKNSTFVRVHEKPFVAFGSGMESLVEATV 344
Query: 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQDGST-SVARYTPTSELEYGT 296
E+V + P + W N PL S ++I+ G ++ + Y
Sbjct: 345 GERVRIPAKYLGYPPPE-IKWYKNG-----IPLESNHTIKAGHVLTIMEVSERDTGNY-- 396
Query: 297 LLCWARNEQGSQRTPCTFHVV 317
N ++ +V
Sbjct: 397 -TVILTNPISKEKQSHVVSLV 416
Score = 78.3 bits (192), Expect = 7e-16
Identities = 46/359 (12%), Positives = 86/359 (23%), Gaps = 87/359 (24%)
Query: 15 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY 74
K + ++CTV A P + W + + +
Sbjct: 426 KSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEW 485
Query: 75 TPTSELEY--------------------------------GTLLCWARNEQGNQRTPCTF 102
+ + C A N+ G +F
Sbjct: 486 RSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545
Query: 103 HVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITI 162
HV + E +P +Q E + C + L W G
Sbjct: 546 HVTRGPE---ITLQPDMQPT-----------EQESVSLWCTADRSTFE-NLTWYKLGPQP 590
Query: 163 SNNASAGRIIT----------------------NQTLVLQSVTRHSGGLYACSAINSQGE 200
+ L++ + G Y C A + + +
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK 650
Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
+ + + P + + E + VSCT NP Q W
Sbjct: 651 KRHC-VVRQLTVLERV------APTITGNLENQT-TSIGESIEVSCTASGNPPPQ-IMWF 701
Query: 261 FNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
+N L ++DG+ ++ + + G C A + G + F +
Sbjct: 702 KDN-----ETLVEDSGIVLKDGNRNL-TIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754
Score = 72.5 bits (177), Expect = 4e-14
Identities = 44/372 (11%), Positives = 84/372 (22%), Gaps = 87/372 (23%)
Query: 2 VNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS 61
+ + + + A E+V + P + W N PL S
Sbjct: 320 TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPE-IKWYKNG-----IPLES 373
Query: 62 -YSIQDGST-SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
++I+ G ++ + Y N ++ +V V P
Sbjct: 374 NHTIKAGHVLTIMEVSERDTGNY---TVILTNPISKEKQSHVVSLV--------VYVPPQ 422
Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ---- 175
+ G C + A PP + W N + +
Sbjct: 423 IGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPC 482
Query: 176 -------------------------------TLVLQSVTRHSGGLYACSAINSQGEGGST 204
L + LY C A+N G G
Sbjct: 483 EEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG-ER 541
Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS 264
++ + + +P E V + CT D + TW
Sbjct: 542 VISFHVTRGPEITLQPDMQPT------------EQESVSLWCTADRSTFEN-LTWYKLGP 588
Query: 265 DTAPRPLTSYSIQDGSTSVARYTPTSELEY-------------------GTLLCWARNEQ 305
P + + + + G +C A++ +
Sbjct: 589 QPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRK 648
Query: 306 GSQRTPCTFHVV 317
+R +
Sbjct: 649 TKKRHCVVRQLT 660
Score = 35.1 bits (80), Expect = 0.040
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 22/132 (16%)
Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
L+ C + G + S+D P + + N + ++C
Sbjct: 10 ALWLCVETRAASVGLPSV--------------SLDLPRLSIQKDILT-IKANTTLQITCR 54
Query: 248 VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT--PTSELEYGTLLCWARNEQ 305
+ W + N+ + + T + G C+ R
Sbjct: 55 GQRDL-----DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETD 109
Query: 306 GSQRTPCTFHVV 317
+
Sbjct: 110 LASVIYVYVQDY 121
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 97.3 bits (242), Expect = 3e-22
Identities = 46/307 (14%), Positives = 90/307 (29%), Gaps = 50/307 (16%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
V + C NP + +W + + + + + V +Y +
Sbjct: 441 MEPGPSVFLKCVAGGNPTPE-ISWELDG-----KKIAN----NDRYQVGQYVTVNGDVVS 490
Query: 84 TLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNAS 130
L C A+++ G +V P + R +
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY---------GLPYI-----RQMEKK 536
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS-GGL 189
+ G + C + P ++W + + N ++ N TL++++V R+S
Sbjct: 537 AIVAGETLIVTCPVAGYPIDS-IVWERDNRALPINRKQ-KVFPNGTLIIENVERNSDQAT 594
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
Y C A N +G ++ + + P A + + + C+V
Sbjct: 595 YTCVAKNQEGYSARGSLEVQV----------MVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644
Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
W + + + S SV G C ARN G Q+
Sbjct: 645 GGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ 704
Query: 310 TPCTFHV 316
+V
Sbjct: 705 FTTPLNV 711
Score = 86.9 bits (215), Expect = 8e-19
Identities = 44/320 (13%), Positives = 83/320 (25%), Gaps = 56/320 (17%)
Query: 11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-TAPRPLTSYSIQDGST 69
V ++ + + + + C P + W G T + + +
Sbjct: 247 PKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVF-RWYKFIEGTTRKQAVVLNDRVKQVS 305
Query: 70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
+ G LC N G + V S +I
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV---------TAPLSAKIDP-PTQTV 355
Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
G F C NP K + W +G I ++ L ++SV + G+
Sbjct: 356 D---FGRPAVFTCQYTGNPI-KTVSWMKDGKAIGHS--------ESVLRIESVKKEDKGM 403
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
Y C N + L +P + + V + C
Sbjct: 404 YQCFVRNDRES---------AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG 454
Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL----------- 298
NP + +W + + + + + V +Y + L
Sbjct: 455 GNPTPE-ISWELDG-----KKIAN----NDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504
Query: 299 --CWARNEQGSQRTPCTFHV 316
C A+++ G +V
Sbjct: 505 YKCIAKSKVGVAEHSAKLNV 524
Score = 80.0 bits (197), Expect = 2e-16
Identities = 58/313 (18%), Positives = 93/313 (29%), Gaps = 47/313 (15%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS----IQDGSTSVARYTPTSE 79
+ E ++V+C V P W +N R L +G+ + S+
Sbjct: 538 IVAGETLIVTCPVAGYPIDSI-VWERDN-----RALPINRKQKVFPNGTLIIENVERNSD 591
Query: 80 LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
T C A+N++G + V + P + G +
Sbjct: 592 Q--ATYTCVAKNQEGYSAR-GSLEVQV-------MVLPRIIPFAFEEG---PAQVGQYLT 638
Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGLYACSAIN 196
C + + WT +G IS + L +++V G + C A N
Sbjct: 639 LHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN 698
Query: 197 SQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQY 256
G T LN+ P + V C D P+ Q
Sbjct: 699 LAGHQQFT-TPLNVY----------VPPRWILEPTDKA-FAQGSDAKVECKADGFPKPQ- 745
Query: 257 FTWAFNNSDTAP--RPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP 311
TW DT + L +++G+ V + G LC A N GS +
Sbjct: 746 VTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDN---IQKTNEGYYLCEAINGIGSGLSA 802
Query: 312 CTFHVVKAGECEH 324
V+A H
Sbjct: 803 VIMISVQAHHHHH 815
Score = 76.1 bits (187), Expect = 3e-15
Identities = 41/315 (13%), Positives = 83/315 (26%), Gaps = 30/315 (9%)
Query: 15 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--YSIQDGS---T 69
K+ RI + + C NP + W ++ GTA + DG
Sbjct: 43 KEPTNRID-FSNSTGAEIECKASGNPMPEI-IWIRSD-GTAVGDVPGLRQISSDGKLVFP 99
Query: 70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
E+ C ARN+ G+ + V+A ++ + +
Sbjct: 100 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVH--VRAVVAQYYEADVNKE--------- 148
Query: 130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHNG--ITISNNASAGRIITNQ--TLVLQSVT 183
+ G C I + + + W + G+ + L ++ V
Sbjct: 149 -HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 207
Query: 184 R-HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
Y C + + I +++ V ++ + + +
Sbjct: 208 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAV-PKVVSLAKFDMKTYSGSSTM 266
Query: 243 LVSCTVDANPQAQYFTWAFNNSD-TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
+ C P + W T + + + + G LC
Sbjct: 267 ALLCPAQGYPVPVF-RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 325
Query: 302 RNEQGSQRTPCTFHV 316
N G + V
Sbjct: 326 NNSVGGESVETVLTV 340
Score = 73.8 bits (181), Expect = 2e-14
Identities = 51/295 (17%), Positives = 95/295 (32%), Gaps = 61/295 (20%)
Query: 26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
+ +C NP +W + + + + + + Y
Sbjct: 357 FGRPAVFTCQYTGNPIKTV-SWMKDG-----KAIGH---SESVLRIESVKKEDKGMYQ-- 405
Query: 86 LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
C+ RN++ + + D P ++ + G ++ C
Sbjct: 406 -CFVRNDRESAEASAELKL------GGRFDPPVIRQAF----QEETMEPGPSVFLKCVAG 454
Query: 146 ANPPYKKLIWTHNGITISNNASAGRIITNQ----------TLVLQSVTRHSGGLYACSAI 195
NP ++ W +G I+NN R Q L + SV + GGLY C A
Sbjct: 455 GNPT-PEISWELDGKKIANN---DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 196 NSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ 255
+ G LN+ + P +Q +++ + E ++V+C V P
Sbjct: 511 SKVGV-AEHSAKLNVYGL----------PYIRQMEKKA--IVAGETLIVTCPVAGYPIDS 557
Query: 256 YFTWAFNNSDTAPRPLTSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQG 306
W +N R L +G+ + S+ T C A+N++G
Sbjct: 558 I-VWERDN-----RALPINRKQKVFPNGTLIIENVERNSDQ--ATYTCVAKNQEG 604
Score = 71.5 bits (175), Expect = 1e-13
Identities = 34/303 (11%), Positives = 71/303 (23%), Gaps = 39/303 (12%)
Query: 24 ALRNEQVLVSCTV---DANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPT 77
+R ++ C + A+ +W + Y + R
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVV-SWHTDEEENYFPGAEYDGKYLVLPSGELHIREV-G 207
Query: 78 SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVD 137
E Y + C ++ + P V + +
Sbjct: 208 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSL--AKFDMKTYSGSST 265
Query: 138 IYFDCHIQANPPYKKLIWTHNGITISNNA----SAGRIITNQTLVLQSVTRHSGGLYACS 193
+ C Q P W + + + TL+++ G Y C
Sbjct: 266 MALLCPAQGYPVPV-FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 324
Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
NS G + L P+ + + +C NP
Sbjct: 325 VNNSVGG---------ESVETVLTVT---APLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 372
Query: 254 AQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313
+W + + + + + + Y C+ RN++ S
Sbjct: 373 KTV-SWMKDG-----KAIGH---SESVLRIESVKKEDKGMYQ---CFVRNDRESAEASAE 420
Query: 314 FHV 316
+
Sbjct: 421 LKL 423
Score = 52.6 bits (126), Expect = 1e-07
Identities = 36/248 (14%), Positives = 63/248 (25%), Gaps = 37/248 (14%)
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
A G+Q A K V +K N + +C
Sbjct: 12 MLFAAVALIACGSQTL--------AANPPDADQKGPVFLK--EPTNRIDFSNSTGAEIEC 61
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSG------GLYACSAI 195
NP + +IW + T + R I+ + LV +YAC A
Sbjct: 62 KASGNPMPE-IIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 196 NSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV---DANP 252
N G S + + V K+ +R ++ C + A+
Sbjct: 121 NQFGSIISRDVHVRAVVA-----QYYEADVNKEH------VIRGNSAVIKCLIPSFVADF 169
Query: 253 QAQYFTWAFNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
+W + + Y + R E Y + C ++ +
Sbjct: 170 VEVV-SWHTDEEENYFPGAEYDGKYLVLPSGELHIREV-GPEDGYKSYQCRTKHRLTGET 227
Query: 310 TPCTFHVV 317
Sbjct: 228 RLSATKGR 235
Score = 46.1 bits (109), Expect = 1e-05
Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 16/146 (10%)
Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPV-CKQSQQRIYG 235
+ + + L+A A+ + G N PV K+ RI
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLA---------ANPPDADQKGPVFLKEPTNRID- 50
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNN-SDTAPRPLTSYSIQDGS---TSVARYTPTSE 291
+ + C NP + W ++ + P DG E
Sbjct: 51 FSNSTGAEIECKASGNPMPEI-IWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 109
Query: 292 LEYGTLLCWARNEQGSQRTPCTFHVV 317
+ C ARN+ GS +
Sbjct: 110 VHAQVYACLARNQFGSIISRDVHVRA 135
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 96.2 bits (239), Expect = 6e-22
Identities = 53/290 (18%), Positives = 86/290 (29%), Gaps = 47/290 (16%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
+ +SC +NP AQY +W + ++ T + Y
Sbjct: 396 GVNLSLSCHAASNPPAQY-SWLIDG-----NIQQH----TQELFISNITEKNSGLYT--- 442
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C A N + + E P + N+ + + + F C +A
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSISSN---------NSKPVEDKDAVAFTCEPEA 493
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
+W NG ++ + N+TL L +VTR+ Y C NS S P
Sbjct: 494 QNT--TYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPV 551
Query: 207 DLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDT 266
L++ P L + +SC +NP QY +W N
Sbjct: 552 TLDVL----------YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQY-SWRING--- 597
Query: 267 APRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
P T V + GT C+ N + +
Sbjct: 598 --IPQQ-------HTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 88.5 bits (219), Expect = 3e-19
Identities = 54/293 (18%), Positives = 87/293 (29%), Gaps = 49/293 (16%)
Query: 26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS-VARYTPTSELEYGT 84
E + +SC +NP AQY +W N GT + I + + + YT
Sbjct: 217 SGENLNLSCHAASNPPAQY-SWFVN--GTFQQSTQELFIPNITVNNSGSYT--------- 264
Query: 85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
C A N + E P + N++ + + + C
Sbjct: 265 --CQAHNSDTGLNRTTVTTITVYAEPPKPFITSN---------NSNPVEDEDAVALTCEP 313
Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
+ +W N ++ + N+TL L SVTR+ G Y C N S
Sbjct: 314 EIQNT--TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD 371
Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS 264
P LN+ + S + +SC +NP AQY +W +
Sbjct: 372 PVILNVLYGPDDPTISPSYTY----------YRPGVNLSLSCHAASNPPAQY-SWLIDG- 419
Query: 265 DTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
++ T + Y C A N +
Sbjct: 420 ----NIQQH----TQELFISNITEKNSGLYT---CQANNSASGHSRTTVKTIT 461
Score = 80.4 bits (198), Expect = 1e-16
Identities = 49/321 (15%), Positives = 81/321 (25%), Gaps = 51/321 (15%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY- 82
++VL+ Y +W R + Y I + E+ Y
Sbjct: 11 VAEGKEVLLLVHNLPQHLFGY-SWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69
Query: 83 -GTLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLN 128
+LL V + + + +
Sbjct: 70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKP------- 122
Query: 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGG 188
+ + + F C + +W N ++ + N+TL L +VTR+
Sbjct: 123 ---VEDKDAVAFTCEPETQDA--TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTA 177
Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
Y C N S LN+ + S E + +SC
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTS----------YRSGENLNLSCHA 227
Query: 249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ 308
+NP AQY +W N S + T + Y C A N
Sbjct: 228 ASNPPAQY-SWFVNG-----TFQQS----TQELFIPNITVNNSGSY---TCQAHNSDTGL 274
Query: 309 RTPCTFHVVKAGECEHPVAVS 329
+ E P S
Sbjct: 275 NRTTVTTITVYAEPPKPFITS 295
Score = 78.5 bits (193), Expect = 4e-16
Identities = 50/314 (15%), Positives = 90/314 (28%), Gaps = 47/314 (14%)
Query: 11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS-- 68
P S + V +C + + W NN P S + +
Sbjct: 110 LPKPSISSNNSKPVEDKDAVAFTCEPETQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLT 167
Query: 69 -TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNL 127
+V R + + C +N +R+ + + + P P
Sbjct: 168 LFNVTRN------DTASYKCETQNPVSARRS-DSVILNVLYGPDAPTISPLNT------- 213
Query: 128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSG 187
G ++ CH +NPP + W NG + Q L + ++T ++
Sbjct: 214 ---SYRSGENLNLSCHAASNPPAQ-YSWFVNGTFQQ---------STQELFIPNITVNNS 260
Query: 188 GLYACSAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC 246
G Y C A NS +T + + F + + + V ++C
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSN---------PVEDEDAVALTC 311
Query: 247 TVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 306
+ W NN P S + + ++ T Y C +NE
Sbjct: 312 EPEIQNTTY--LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY---ECGIQNELS 366
Query: 307 SQRTPCTFHVVKAG 320
+ V G
Sbjct: 367 VDHSDPVILNVLYG 380
Score = 32.6 bits (74), Expect = 0.21
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 13/81 (16%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
L + +SC +NP QY +W N P T V + G
Sbjct: 571 YLSGANLNLSCHSASNPSPQY-SWRING-----IPQQ-------HTQVLFIAKITPNNNG 617
Query: 84 TLLCWARNEQGNQRTPCTFHV 104
T C+ N + +
Sbjct: 618 TYACFVSNLATGRNNSIVKSI 638
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 87.3 bits (216), Expect = 3e-19
Identities = 49/306 (16%), Positives = 95/306 (31%), Gaps = 36/306 (11%)
Query: 24 ALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTS-----YSIQ-DGSTSVARYTP 76
+ + C + +A P+ TW SG P + + DG+ T
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLI-TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK 170
Query: 77 TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
+ +C A+N ++ + +K ++ K + + G
Sbjct: 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ--YVSKDMMAKAGD 228
Query: 137 DIYFDCHIQANPPYKKLIWTHNGITISNNASA----GRIITNQTLVLQSVTRHSGGLYAC 192
C +NP + NG ++ N + + L+ ++ G+Y C
Sbjct: 229 VTMIYCMYGSNPM-GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287
Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
N G+ L + P +Q +++ + + V + C V P
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSA----------PKYEQKPEKVIVVKQGQDVTIPCKVTGLP 337
Query: 253 QAQYFTWAFNNSDTAPRPLTS--YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT 310
W+ N +PL+ ++ D + + YG C A NE G +
Sbjct: 338 APNV-VWSHNA-----KPLSGGRATVTDSGLVIKGVKNGDKGYYG---CRATNEHGDKYF 388
Query: 311 PCTFHV 316
V
Sbjct: 389 ETLVQV 394
Score = 72.6 bits (178), Expect = 2e-14
Identities = 46/305 (15%), Positives = 84/305 (27%), Gaps = 29/305 (9%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQDGSTSVARYTPTSELEY 82
N ++ C ++ N Q ++W + + + +GS R + E Y
Sbjct: 18 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHY 77
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
C+A G + + K + EG DC
Sbjct: 78 ---QCFAETPAGVASSRVI--SFRKTYLIASPAKTHEK----------TPIEGRPFQLDC 122
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGR------IITNQTLVLQSVTR---HSGGLYACS 193
+ P + W NA + L VT+ Y C+
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
A N+ + + I + EPV + + + A + ++ C +NP
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM-AKAGDVTMIYCMYGSNPM 241
Query: 254 AQYFTWAFNNSDTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC 312
+ N D P + S + T + G C N G +
Sbjct: 242 GY-PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK-H 299
Query: 313 TFHVV 317
+ +
Sbjct: 300 SLKLT 304
Score = 65.3 bits (159), Expect = 6e-12
Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 20/196 (10%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-TLVLQSVTRHSGGL 189
+ E +C I+ N K W +G + + + ++ +LV G
Sbjct: 17 LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGH 76
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV- 248
Y C A G S + I P + I G + C +
Sbjct: 77 YQCFAETPAGVASSRVISFRKTYL-------IASPAKTHEKTPIEG----RPFQLDCVLP 125
Query: 249 DANPQAQYFTWAFNNSDTAPRPLTS-----YSIQ-DGSTSVARYTPTSELEYGTLLCWAR 302
+A P+ TW S P + + DG+ T + +C A+
Sbjct: 126 NAYPKPLI-TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
Query: 303 NEQGSQRTPCTFHVVK 318
N + + +K
Sbjct: 185 NAAVDEEVVLVEYEIK 200
Score = 33.0 bits (75), Expect = 0.13
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--YSIQDGSTSVARYTP 76
+++ + + V + C V P W+ N +PL+ ++ D +
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNV-VWSHNA-----KPLSGGRATVTDSGLVIKGVKN 369
Query: 77 TSELEYGTLLCWARNEQGNQRTPCTFHV 104
+ YG C A NE G++ V
Sbjct: 370 GDKGYYG---CRATNEHGDKYFETLVQV 394
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 86.4 bits (214), Expect = 9e-19
Identities = 52/303 (17%), Positives = 88/303 (29%), Gaps = 42/303 (13%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
A E + + C VD P+ + W ++ P ++ S+ G
Sbjct: 17 AAIGEPITLQCKVDGTPEIRI-AWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDV-G 74
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
C A N G + + + K G + F+C
Sbjct: 75 EYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDV----------HETLGFPVAFECR 124
Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQ--TLVLQSVTRHSGGLYACSAINSQGEG 201
I + P + + W +G + ++A+ + TL + + G Y CSA N G
Sbjct: 125 INGSEPLQ-VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTA 183
Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
S+ L + + P + E C V + TWA
Sbjct: 184 SSS---------AKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAK 233
Query: 262 NNSDTAPRPLTSYSIQDGSTSVARYTPTSELE--------YGTLLCWARNEQGSQRTPCT 313
+N R + G+ + T+ L G C+A N G
Sbjct: 234 DN-----REIRP----GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 284
Query: 314 FHV 316
V
Sbjct: 285 LGV 287
Score = 85.2 bits (211), Expect = 3e-18
Identities = 53/307 (17%), Positives = 92/307 (29%), Gaps = 55/307 (17%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-- 81
E C V + TWA +N R + G+ + T+ L
Sbjct: 209 LALGESGTFKCHVTGTAPIK-ITWAKDN-----REIRP----GGNYKMTLVENTATLTVL 258
Query: 82 ------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG 135
G C+A N G V + P KL + +
Sbjct: 259 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP---------PRFIKKLEPSRIVK---QD 306
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACS 193
++C I +P K ++W + I ++ L + +++ G Y C
Sbjct: 307 EHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
A N+ G + +L + EP + + L+ V + C + P
Sbjct: 366 AHNAAGS---------ASSSTSL---KVKEPPVFRKKPHPVETLKGADVHLECELQGTPP 413
Query: 254 AQYFTWAFNNSDTAPRPLTS---YSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
Q +W + R L S Y I + + + G C A N+ GS
Sbjct: 414 FQ-VSWHKDK-----RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467
Query: 310 TPCTFHV 316
+ +
Sbjct: 468 CVGSITL 474
Score = 84.1 bits (208), Expect = 6e-18
Identities = 48/324 (14%), Positives = 96/324 (29%), Gaps = 36/324 (11%)
Query: 2 VNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPL 59
L+ P + + V C ++ + Q +W +
Sbjct: 91 AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQV-SWYKDGELLKDDANLQ 149
Query: 60 TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
TS+ + + + + +Y C A N G + + + P
Sbjct: 150 TSFIHNVATLQILQTDQSHVGQY---NCSASNPLGTASSSAKLTLSEHEV------PPFF 200
Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTL 177
+K + + G F CH+ P K + W + I + + TL
Sbjct: 201 DLKPV---SVDLA-LGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATL 255
Query: 178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL 237
+ VT+ G Y C A N G+ S L + + P + +
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEP----------PRFIKKLEPSRIVK 304
Query: 238 RNEQVLVSCTVDANPQAQYFTWAFNNS--DTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
++E C + +P+ + W + + + + S+ + + G
Sbjct: 305 QDEHTRYECKIGGSPEIKV-LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS---G 360
Query: 296 TLLCWARNEQGSQRTPCTFHVVKA 319
C A N GS + + V +
Sbjct: 361 DYTCEAHNAAGSASSSTSLKVKEP 384
Score = 75.6 bits (186), Expect = 3e-15
Identities = 41/298 (13%), Positives = 96/298 (32%), Gaps = 41/298 (13%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 84
+E C + +P+ + W + + + + S+ + + G
Sbjct: 306 DEHTRYECKIGGSPEIKV-LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS---GD 361
Query: 85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
C A N G+ + + V + P + K L +G D++ +C +
Sbjct: 362 YTCEAHNAAGSASSSTSLKVK---------EPPVFRKKP---HPVETL-KGADVHLECEL 408
Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSGGLYACSAINSQG 199
Q PP++ + W + + + + ++ + +V G Y C A N G
Sbjct: 409 QGTPPFQ-VSWHKDKRELRSG---KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464
Query: 200 EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW 259
+ ++ ++ P + + E+V + T++ W
Sbjct: 465 S---------DTCVGSI---TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPIS-VAW 511
Query: 260 AFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
+ + + + + +++ G C +NE G+Q T V+
Sbjct: 512 FKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 66.8 bits (163), Expect = 3e-12
Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 27/184 (14%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSI-QDGSTSVARYTPTSE 79
L+ V + C + P Q +W + R L S Y I + +
Sbjct: 396 TLKGADVHLECELQGTPPFQ-VSWHKDK-----RELRSGKKYKIMSENFLTSIHILNVDS 449
Query: 80 LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
+ G C A N+ G+ + + P KL + S + G ++
Sbjct: 450 ADIGEYQCKASNDVGSDTCVGSITLK---------APPRFVKKLS---DISTV-VGEEVQ 496
Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ---TLVLQSVTRHSGGLYACSAIN 196
I+ P + W + I + I ++ TL + G Y C N
Sbjct: 497 LQATIEGAEPIS-VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKN 555
Query: 197 SQGE 200
G
Sbjct: 556 EAGT 559
Score = 34.0 bits (78), Expect = 0.085
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
A E + + C VD P+ + W ++ P ++ S+ G
Sbjct: 17 AAIGEPITLQCKVDGTPEIRI-AWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDV-G 74
Query: 296 TLLCWARNEQGSQRTPCTFHVVKAGE 321
C A N G+ + + +
Sbjct: 75 EYTCKAENSVGAVASSAVLVIKERKL 100
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 84.5 bits (209), Expect = 1e-18
Identities = 52/301 (17%), Positives = 91/301 (30%), Gaps = 35/301 (11%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-Y 82
+ C +P+ + TW + + + + +V R P
Sbjct: 18 GVSGGVASFVCQATGDPKPR-VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDE 76
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
C A+N G V++ E + P P++ + V+ C
Sbjct: 77 NVYECVAQNSVGEITVHAKLTVLR--EDQLPSGFPNIDMGP----QLKVVERTRTATMLC 130
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQGE 200
NP ++ W + + + +AS GRI + + L ++S G Y C A NS G
Sbjct: 131 AASGNPD-PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
S+P +L + V + + V ++C +P W
Sbjct: 190 RYSSPANLYVR--VQNVAPRFSILPMSHE------IMPGGNVNITCVAVGSPMPY-VKWM 240
Query: 261 FNNSDTAPR---PLTSYSIQDGSTS-VARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
D P P+ ++ A YT C A + G V
Sbjct: 241 QGAEDLTPEDDMPVGRNVLELTDVKDSANYT-----------CVAMSSLGVIEAVAQITV 289
Query: 317 V 317
Sbjct: 290 K 290
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 84.5 bits (208), Expect = 2e-18
Identities = 45/319 (14%), Positives = 79/319 (24%), Gaps = 33/319 (10%)
Query: 12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-----APRPLTSYSIQD 66
P C A E C + + +N R + +++
Sbjct: 29 PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN 88
Query: 67 GSTSVARYTPT-SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGR 125
G +A YT S Y LC + G+ ++ P
Sbjct: 89 GDLWIANYTSNDSHRRY---LCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELG------ 139
Query: 126 NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRH 185
++ I C I Y + W N + + + Q L++ +
Sbjct: 140 ------THDKYGIDLYCGILYAKHYNNITWYKNNQELIID-GTKYSQSGQNLIIHNPELE 192
Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
G Y C D+ +++ L + K E ++
Sbjct: 193 DSGRYDCYVHYDD---VRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANIT 249
Query: 246 CTVDANPQAQY---FTWAFNNSDTAPRPLTSYSIQDGSTSVARYT----PTSELEYGTL- 297
CT + W + YSI S + T +E G
Sbjct: 250 CTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTY 309
Query: 298 LCWARNEQGSQRTPCTFHV 316
C N + T +
Sbjct: 310 TCRGHNYYFDKTLTTTVVL 328
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 82.6 bits (204), Expect = 1e-17
Identities = 44/298 (14%), Positives = 87/298 (29%), Gaps = 26/298 (8%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-DGSTSVARYTPTSELEY 82
+R VL++C+ +++ W + A +GS + + +
Sbjct: 33 TMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP 92
Query: 83 --GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
G C A T V+ AG + ++ A G +
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVMVAG-------PLRFLSQT-ESITAF---MGDTVLL 141
Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQ 198
C + +P + W N ++ R++ + L + + G+Y CSA N
Sbjct: 142 KCEVIGDPMP-TIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPA 200
Query: 199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258
++ I L + + + A+ + ++ C V P FT
Sbjct: 201 STRTGNEAEVRI-----LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPS-FT 254
Query: 259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
W R + + ++ T GT C + + V
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDS---GTYTCVVTYKNENISASAELTV 309
Score = 76.0 bits (187), Expect = 2e-15
Identities = 50/294 (17%), Positives = 85/294 (28%), Gaps = 46/294 (15%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQ-DGSTSVARYTPTSELE 81
A + VL+ C V +P W N P P S + G+ ++R P
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTI-HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDS-- 189
Query: 82 YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFD 141
G C ARN + + + + + + ++ N+ A EG D +
Sbjct: 190 -GVYRCSARNPASTRTGNEAEVRILS---DPGLHRQLYFLQRPSNVIAI---EGKDAVLE 242
Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
C + PP W I + ++ L++ +VT G Y C
Sbjct: 243 CCVSGYPPPS-FTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN- 300
Query: 202 GSTPFDLNINKMVNLIFNS----IDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
I+ L ++ P + + C V P
Sbjct: 301 --------ISASAELTVLVPPWFLNHP---SNLYAYES----MDIEFECAVSGKPVPTV- 344
Query: 258 TWAFNNSDTAPRPLTSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
W N + + + + + E G C A NE G+
Sbjct: 345 NWMKNG-----DVVIPSDYFQIVGGSNLRILGVVKSDE---GFYQCVAENEAGN 390
Score = 60.6 bits (147), Expect = 2e-10
Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 24/198 (12%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSVTRHS--- 186
V G ++ +C +++ + W +G+ ++ + + N +L++Q++
Sbjct: 32 VTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHK 91
Query: 187 --GGLYACSA-INSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVL 243
GLY C A + G S + + L F S E + A + VL
Sbjct: 92 PDEGLYQCEASLGDSGSIISRTAKVMVAGP--LRFLSQTESI---------TAFMGDTVL 140
Query: 244 VSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQ-DGSTSVARYTPTSELEYGTLLCWA 301
+ C V +P W N D P P S + G+ ++R P G C A
Sbjct: 141 LKCEVIGDPMPTI-HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDS---GVYRCSA 196
Query: 302 RNEQGSQRTPCTFHVVKA 319
RN ++ + +
Sbjct: 197 RNPASTRTGNEAEVRILS 214
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 82.2 bits (203), Expect = 2e-17
Identities = 48/309 (15%), Positives = 81/309 (26%), Gaps = 26/309 (8%)
Query: 9 TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS 68
EP S ++V +SC V NP+ W N + YS+ DGS
Sbjct: 9 VQEP----SHVMFPLDSEEKKVKLSCEVKGNPKPHI-RWKLNGTDVDIGMDFRYSVVDGS 63
Query: 69 TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLN 128
+ P + GT C A N G + + A S
Sbjct: 64 LLINN--PNKTQDAGTYQCIATNSFGTIVS-REAKLQFAYLENFKTRTRSTV-------- 112
Query: 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGG 188
+ G + C + W N + L + V + G
Sbjct: 113 --SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG 170
Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
Y C N+ + + + + + Q + + A + V + C
Sbjct: 171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP-AEKGTTVKLECFA 229
Query: 249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNEQGS 307
NP W + P + + + + G+ C A N +G
Sbjct: 230 LGNPVPTI-LWRRADGK--PIARKARRHKSNGILEIPNFQQEDA---GSYECVAENSRGK 283
Query: 308 QRTPCTFHV 316
Sbjct: 284 NVAKGQLTF 292
Score = 66.8 bits (163), Expect = 2e-12
Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 23/178 (12%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
A + V + C NP W + G +G + + G
Sbjct: 217 AEKGTTVKLECFALGNPVPTI-LWRRAD-GKPIARKARRHKSNGILEIPNFQQEDA---G 271
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
+ C A N +G +P+ + +++ + ++++C
Sbjct: 272 SYECVAENSRGKNVAKGQLTFY---------AQPNWVQII-NDIHVA---MEESVFWECK 318
Query: 144 IQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGLYACSAINSQGE 200
P W NG + RI I TL + V G+Y C A N G
Sbjct: 319 ANGRPK-PTYRWLKNGDPLLTR---DRIQIEQGTLNITIVNLSDAGMYQCVAENKHGV 372
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 81.8 bits (202), Expect = 2e-17
Identities = 55/312 (17%), Positives = 90/312 (28%), Gaps = 30/312 (9%)
Query: 9 TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS 68
++P + E+V ++C ANP A Y W N + P + Y + G
Sbjct: 8 EEQP----AHTLFPEGSAEEKVTLTCRARANPPATY-RWKMNGTELKMGPDSRYRLVAGD 62
Query: 69 TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLN 128
++ P + G+ C A N +G + + E ++
Sbjct: 63 LVISN--PVKAKDAGSYQCVATNARGTVVSR-EASLRFGFLQEFSAEERDPV-------- 111
Query: 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHS 186
+ EG + F C + P W N A R ++ L +
Sbjct: 112 --KITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASD 169
Query: 187 GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC 246
G Y+C A + + F + P K AL + V + C
Sbjct: 170 LGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLEC 229
Query: 247 TVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNEQ 305
NP Q W + TS + + E GT C A N +
Sbjct: 230 FAFGNPVPQI-KWRKLDG-----SQTSKWLSSEPLLHIQNVDFEDE---GTYECEAENIK 280
Query: 306 GSQRTPCTFHVV 317
G +
Sbjct: 281 GRDTYQGRIIIH 292
Score = 63.7 bits (155), Expect = 2e-11
Identities = 44/296 (14%), Positives = 87/296 (29%), Gaps = 49/296 (16%)
Query: 24 ALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS--VARYTPTSEL 80
V+ +C+ P Y W N + + + +A+ +
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSY-RWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG 171
Query: 81 EYGTLLCWARNEQG--NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI 138
Y C+A + + F + + PS++ K + G +
Sbjct: 172 NY---SCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT---YALTGQMV 225
Query: 139 YFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ 198
+C NP ++ W + ++ + + L +Q+V G Y C A N +
Sbjct: 226 TLECFAFGNPV-PQIKWRKLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIK 280
Query: 199 GEGGSTPFDLNINKMVNLIFNS----IDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA 254
G +I ++ +D + G + SC P+
Sbjct: 281 GR---------DTYQGRIIIHAQPDWLDVI---TDTEADIG----SDLRWSCVASGKPRP 324
Query: 255 QYFTWAFNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
W + +PL S + G ++ Y C A N+ G+
Sbjct: 325 AV-RWLRDG-----QPLASQNRIEVSGGELRFSKLVLEDSGMYQ---CVAENKHGT 371
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 79.0 bits (194), Expect = 1e-16
Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 31/220 (14%)
Query: 15 KQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTA-PRPLTSYSIQDGSTSVA 72
Q+ R ++ ++ +CT + P + +W G A + + + + S
Sbjct: 138 TQAVLRAKKGQDDKVLVATCTSANGKPPSV-VSWETRLKGEAEYQEIRNPNGTVTVISRY 196
Query: 73 RYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVL 132
R P+ E +L C + T +V ++ P V I + +
Sbjct: 197 RLVPSREAHQQSLACIVNYHMDRFKESLTLNV------QYE---PEVTI---EGFDGNWY 244
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQS-VTRHSGGLYA 191
+ +D+ C ANPP + WT ++ N+TL + + G Y
Sbjct: 245 LQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV----EAQNRTLFFKGPINYSLAGTYI 300
Query: 192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQ 231
C A N G S ++NI + +
Sbjct: 301 CEATNPIGT-RSGQVEVNIT----------EAAALEHHHH 329
Score = 67.9 bits (165), Expect = 7e-13
Identities = 46/318 (14%), Positives = 78/318 (24%), Gaps = 50/318 (15%)
Query: 24 ALRNEQVLVSCTVD---ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSEL 80
V++ C+ + + TW + +G+ + + Y+ G + +A Y E
Sbjct: 26 GFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGS-KQNVAIYNPSMGVSVLAPYRERVEF 84
Query: 81 EY------------------GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIK 122
G +C R V +
Sbjct: 85 LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV-------MAKPTNWIEG 137
Query: 123 LGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN----NASAGRIITNQTLV 178
L A + + C P + W + G +
Sbjct: 138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYR 197
Query: 179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR 238
L AC LN+ EP L+
Sbjct: 198 LVPSREAHQQSLACIVNYHMDRF-KESLTLNVQ----------YEPEVTIEGFDGNWYLQ 246
Query: 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 298
V ++C DANP A + W N L T + P + GT +
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLN-----GSLPKGVEAQNRTLFFK-GPINYSLAGTYI 300
Query: 299 CWARNEQGSQRTPCTFHV 316
C A N G++ ++
Sbjct: 301 CEATNPIGTRSGQVEVNI 318
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 79.3 bits (195), Expect = 2e-16
Identities = 49/299 (16%), Positives = 86/299 (28%), Gaps = 51/299 (17%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87
Q + C ++ P+ W +S S ++ V EL + C
Sbjct: 155 NQDALVCISESVPEPIV-EWVLCDSQGESCKEESPAVVKKEEKVLH-----ELFGTDIRC 208
Query: 88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN 147
ARNE G + T F + + P L G ++ C
Sbjct: 209 CARNELGRECT-RLFTIDLN---QTPQTTLPQL----------FLKVGEPLWIRCKAVHV 254
Query: 148 PPYKKLIWTHNG--------ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199
L W +S ++ +I + SV R+ G Y CS+
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314
Query: 200 EGGSTPFDLNINKMVNLIFNSIDEP--VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
+ +I E + + Y + E+ S A PQ +
Sbjct: 315 Q---------------SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR-C 358
Query: 258 TWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
TW F+ P + +G + + + G + A N+ T ++
Sbjct: 359 TWTFSR---KSFPCEQKGLDNGYSISKF--CNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 62.0 bits (150), Expect = 8e-11
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 21/179 (11%)
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-TLVLQSVTRHSGGLYA 191
+ I + A +W +++ ++V+ +T G Y
Sbjct: 61 DVSASITLQVLVDAPGN-ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYL 119
Query: 192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN 251
+ N + + + ++ R Q + C ++
Sbjct: 120 LFIQSEAT---------NYTILFTVSIRNTLLYTLRRPYFRKME----NQDALVCISESV 166
Query: 252 PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT 310
P+ W +S S ++ V EL + C ARNE G + T
Sbjct: 167 PEPIV-EWVLCDSQGESCKEESPAVVKKEEKVLH-----ELFGTDIRCCARNELGRECT 219
Score = 60.8 bits (147), Expect = 2e-10
Identities = 42/291 (14%), Positives = 81/291 (27%), Gaps = 42/291 (14%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGST-SVARYTPTSELEY 82
+ + + VDA W F +S +P + + + + T T EY
Sbjct: 60 VDVSASITLQVLVDAPGNISC-LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
L + ++E N F V + + +P + E D C
Sbjct: 119 ---LLFIQSEATNYT--ILFTVSIRNTLLYTLRRPYFRK-----------MENQDA-LVC 161
Query: 143 HIQANPPYKKLIWTHNG-ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
++ P + W S + ++ + VL + G C A N G
Sbjct: 162 ISESVPE-PIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL---FGTDIRCCARNELGRE 217
Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
+ F +++N+ + V E + + C TW
Sbjct: 218 CTRLFTIDLNQTPQTTLPQLFLKV-------------GEPLWIRCKAVHVNHGFGLTWEL 264
Query: 262 NNSDTAPRPLTSYSIQDGSTSVARY-----TPTSELEYGTLLCWARNEQGS 307
N S + ++ R + + + G C +
Sbjct: 265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Score = 32.3 bits (73), Expect = 0.22
Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 9/135 (6%)
Query: 187 GGLYAC----SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
+ C N G S+ + + +L + + + +
Sbjct: 7 LPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASI 66
Query: 243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWA 301
+ VDA W F +S +P + + + + T T EY L +
Sbjct: 67 TLQVLVDAPGNISC-LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY---LLFI 122
Query: 302 RNEQGSQRTPCTFHV 316
++E + T +
Sbjct: 123 QSEATNYTILFTVSI 137
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 77.3 bits (190), Expect = 3e-16
Identities = 47/301 (15%), Positives = 75/301 (24%), Gaps = 32/301 (10%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
V + C + + W S DGS+S+ + GT
Sbjct: 19 GATVTLRCVGNGS-----VEWDGPPSPHWTL------YSDGSSSILSTNNATFQNTGTYR 67
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C + +V D L + + V+ E D C +
Sbjct: 68 CTEPGDPLGGSAAIHLYVK---------DPARPWNVLAQEV---VVFEDQDALLPCLLTD 115
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
+ + + Y CSA+ + S
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISI 175
Query: 207 DLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD- 265
L + K++ P RI G E + C+ + NN+
Sbjct: 176 RLKVQKVIPGPPALTLVP---AELVRIRG----EAAQIVCSASSVDVNFDVFLQHNNTKL 228
Query: 266 TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV-KAGECEH 324
P+ ++ + G C A N QG T F VV AG H
Sbjct: 229 AIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHH 288
Query: 325 P 325
Sbjct: 289 H 289
Score = 34.6 bits (79), Expect = 0.042
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 2/92 (2%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSG-TAPRPLTSYSIQDGSTSVARYTPTSELEY 82
+R E + C+ + NN+ P+ ++ +
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHA 257
Query: 83 GTLLCWARNEQGNQRTPCTFHVV-KAGECEHP 113
G C A N QG T F VV AG H
Sbjct: 258 GNYSCVASNVQGKHSTSMFFRVVESAGNSHHH 289
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 78.6 bits (193), Expect = 4e-16
Identities = 45/298 (15%), Positives = 81/298 (27%), Gaps = 51/298 (17%)
Query: 29 QVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW 88
Q + C ++ P+ W +S S ++ V EL + C
Sbjct: 156 QDALVCISESVPEPI-VEWVLCDSQGESCKEESPAVVKKEEKV-----LHELFGTDIRCC 209
Query: 89 ARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP 148
ARNE G + T + + Q L + L G ++ C
Sbjct: 210 ARNELGRECTRLFTIDLN----------QTPQTTLPQL----FLKVGEPLWIRCKAVHVN 255
Query: 149 PYKKLIWTHNGITISNNASAGR--------IITNQTLVLQSVTRHSGGLYACSAINSQGE 200
L W + +I + SV R+ G Y CS+
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS- 314
Query: 201 GGSTPFDLNINKMVNLIFNSIDEP-VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW 259
+ I +++ + + Y + E+ S A PQ + TW
Sbjct: 315 ---QSALVTI----------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR-CTW 360
Query: 260 AFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
F+ + + + + G + A N+ F +
Sbjct: 361 TFSR-----KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT--KMFTLN 411
Score = 73.2 bits (179), Expect = 2e-14
Identities = 40/307 (13%), Positives = 80/307 (26%), Gaps = 55/307 (17%)
Query: 27 NEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY-----TPTSEL 80
E + + C N TW N S + ++ R + +
Sbjct: 242 GEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300
Query: 81 EYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
+ G C + + V+K I + +++ + F
Sbjct: 301 DTGYYTCSSSKHPS---QSALVTI---------VEKG--FINATNSSEDYEIDQYEEFCF 346
Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
+A P + WT + + + ++ +H G Y A N
Sbjct: 347 SVRFKAYPQI-RCTWTFSRKSFPCEQK--GLDNGYSISKFCNHKHQPGEYIFHAENDDA- 402
Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
KM L +P ++ SC D P +TW
Sbjct: 403 --------QFTKMFTLNIRR--KP-------QVL--AEASASQASCFSDGYPLPS-WTWK 442
Query: 261 FNN----SDTAPRPLTSYSIQDGSTSVARYTPTSEL------EYGTLLCWARNEQGSQRT 310
+ + T ++ + ++ +S L + + C A N G+
Sbjct: 443 KCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCE 502
Query: 311 PCTFHVV 317
+
Sbjct: 503 TILLNSP 509
Score = 60.5 bits (146), Expect = 3e-10
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 21/181 (11%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-TNQTLVLQSVTRHSGGL 189
++ I + A +W +++ ++V+ +T G
Sbjct: 59 EVDVSASITLQVLVDAPGNIS-CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGE 117
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
Y + N + + + ++ R Q + C +
Sbjct: 118 YLLFIQSEAT---------NYTILFTVSIRNTLLYTLRRPYFRKME----NQDALVCISE 164
Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
+ P+ W +S S ++ V EL + C ARNE G +
Sbjct: 165 SVPEPI-VEWVLCDSQGESCKEESPAVVKKEEKV-----LHELFGTDIRCCARNELGREC 218
Query: 310 T 310
T
Sbjct: 219 T 219
Score = 51.2 bits (122), Expect = 2e-07
Identities = 34/219 (15%), Positives = 56/219 (25%), Gaps = 46/219 (21%)
Query: 17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTP 76
+ Y + E+ S A PQ + TW F+ + +
Sbjct: 331 NSSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTFSR-----KSFPCEQKGLDNGYSISKFC 384
Query: 77 TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
+ + G + A N+ F + ++ K VL E
Sbjct: 385 NHKHQPGEYIFHAENDDAQFT--KMFTLN-------------IRRK------PQVLAEAS 423
Query: 137 DIYFDCHIQANPPYKKLIWTHNG---------------ITISNNASAGRIITNQTLVLQS 181
C P W +N G+ +++ TL +
Sbjct: 424 ASQASCFSDGYPLPS-WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE 482
Query: 182 VTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNS 220
+ G L C A NS G LN I +
Sbjct: 483 AIK--GFLVKCCAYNSLGT-SCETILLNSPGPFPFIQDG 518
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 76.7 bits (188), Expect = 5e-16
Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 20/179 (11%)
Query: 27 NEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEY 82
+ C P AQ TW ++ G P G TS+ P+S+++
Sbjct: 132 EPVPMARCVSTGGRPPAQ-ITW-HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDG 189
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
+ C +E + T ++ E + + C
Sbjct: 190 KNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNN----------WYLGQNEATLTC 239
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
++NP W+ + A + L+++ V + C+ N+ G
Sbjct: 240 DARSNPEPTGYNWSTTMGPLPPFA----VAQGAQLLIRPVDKPINTTLICNVTNALGAR 294
Score = 67.8 bits (165), Expect = 5e-13
Identities = 42/323 (13%), Positives = 86/323 (26%), Gaps = 62/323 (19%)
Query: 24 ALRNEQVLVSCTVDANPQAQYF----TWAFNNSGTAPRPLTSYSIQDGST-------SVA 72
+ V + C + TWA + + + G +
Sbjct: 12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGE---SGSMAVFHQTQGPSYSESKRLEFV 68
Query: 73 RYTPTSELEYGTLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
+EL +L C R+ + V A KP
Sbjct: 69 AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA--------KPQN 120
Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN-----NASAGRIITN 174
++ + L C P ++ W + + N +G +
Sbjct: 121 TAEVQK----VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVT 176
Query: 175 QTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNINKMVNLIFNSIDEPVCKQSQQRI 233
+L ++ G C + E +L + + +
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY-------YPPEVSISGYDNNWY 229
Query: 234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE 293
G + ++C +NP+ + W+ PL +++ G+ P +
Sbjct: 230 LG---QNEATLTCDARSNPEPTGYNWSTTM-----GPLPPFAVAQGAQ--LLIRPVDKPI 279
Query: 294 YGTLLCWARNEQGSQRTPCTFHV 316
TL+C N G+++ T V
Sbjct: 280 NTTLICNVTNALGARQAELTVQV 302
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 76.1 bits (187), Expect = 6e-16
Identities = 41/293 (13%), Positives = 77/293 (26%), Gaps = 31/293 (10%)
Query: 26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
E V + C + + W S P + + +++ T + GT
Sbjct: 18 PGETVTLRCVSNGSV-----EWDGPIS-----PYWTLDPESPGSTLTTRNATFKNT-GTY 66
Query: 86 LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
C + T +V D L + + + EG + C I
Sbjct: 67 RCTELEDPMAGSTTIHLYVK---------DPAHSWNLLAQEV---TVVEGQEAVLPCLIT 114
Query: 146 ANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTP 205
+ G + + +++ Y C + + E ST
Sbjct: 115 DPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTG 174
Query: 206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265
L +N++ EP RI G E + C+ ++
Sbjct: 175 IWLKVNRVHPEPPQIKLEP---SKLVRIRG----EAAQIVCSATNAEVGFNVILKRGDTK 227
Query: 266 TAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
+ + + G C A N+ G++ F VV
Sbjct: 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Score = 32.6 bits (74), Expect = 0.18
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDGSTSVARYTPTSELEY 82
+R E + C+ ++ + + +
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDA 257
Query: 83 GTLLCWARNEQGNQRTPCTFHVV 105
G C A N+ G + F VV
Sbjct: 258 GIYSCVASNDVGTRTATMNFQVV 280
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 75.9 bits (187), Expect = 9e-16
Identities = 57/305 (18%), Positives = 102/305 (33%), Gaps = 46/305 (15%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS--VARYTPTSELE 81
E C V + TWA +N P ++ + + + V + T
Sbjct: 17 LALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA-- 73
Query: 82 YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFD 141
G C+A N G V + P KL + ++ + ++
Sbjct: 74 -GQYTCYASNVAGKDSCSAQLGVQE---------PPRFIKKLE---PSRIVKQDEHTRYE 120
Query: 142 CHIQANPPYKKLIWTHNG--ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199
C I +P K++W + I S+ + + L + +++ G Y C A N+ G
Sbjct: 121 CKIGGSPE-IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 200 EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW 259
S+ L + + PV ++ + L+ V + C + P Q +W
Sbjct: 180 S-ASSSTSLKVKEP----------PVFRKKPHPVE-TLKGADVHLECELQGTPPFQ-VSW 226
Query: 260 AFNNSDTAPRPLTS---YSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315
+ R L S Y I + + + G C A N+ GS C
Sbjct: 227 HKDK-----RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT--CVGS 279
Query: 316 V-VKA 319
+ +KA
Sbjct: 280 ITLKA 284
Score = 69.0 bits (169), Expect = 2e-13
Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 20/190 (10%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGG 188
L G F CH+ P K + W + I + + TL + VT+ G
Sbjct: 16 DLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
Y C A N G+ S L + + P + + ++E C +
Sbjct: 75 QYTCYASNVAGK-DSCSAQLGVQE----------PPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 249 DANPQAQYFTWAFNNSD--TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 306
+P+ + W + ++ + + S+ + + G C A N G
Sbjct: 124 GGSPEIKV-LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS---GDYTCEAHNAAG 179
Query: 307 SQRTPCTFHV 316
S + + V
Sbjct: 180 SASSSTSLKV 189
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 75.3 bits (185), Expect = 2e-15
Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 29/310 (9%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTS--VARYTPTS 78
VL+ C V + + W + R ++ + +DG + + ++
Sbjct: 18 VTGECNVLLKCKVANIKKETHIVWYKDE-----REISVDEKHDFKDGICTLLITEFSKKD 72
Query: 79 ELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI 138
Y ++++G ++ E V K +L EG+ +
Sbjct: 73 AGIY---EVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS--ATDLKIQSTAEGIQL 127
Query: 139 YFDCHIQANPPYKKLIWTHNG--ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN 196
Y K+ W+HNG I S+ G L + T + G Y +
Sbjct: 128 YSFVTYYVEDL--KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD 185
Query: 197 SQGEGGST---------PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
+ T ++ + + + + ++C
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN 245
Query: 248 VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
V +P + +W N A + + G T+ S + G +N+ GS
Sbjct: 246 VWGDPPPE-VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304
Query: 308 QRTPCTFHVV 317
+ + T V
Sbjct: 305 ETSDFTVSVF 314
Score = 51.1 bits (122), Expect = 2e-07
Identities = 21/214 (9%), Positives = 53/214 (24%), Gaps = 54/214 (25%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGLY 190
++ C + ++W + IS + + TL++ ++ G+Y
Sbjct: 20 GECNVLLKCKVANIKKETHIVWYKDEREISVD---EKHDFKDGICTLLITEFSKKDAGIY 76
Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
+ +G+ S + L+ + E + + ++ AL + + T +
Sbjct: 77 EVILKDDRGKDKSR---------LKLVDEAFKELMMEVCKKI---ALSATDLKIQSTAEG 124
Query: 251 NPQAQYF---------TWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL--- 298
+ W+ N + R E L
Sbjct: 125 IQLYSFVTYYVEDLKVNWSHNG-----SAIRYSD---------RVKTGVTGEQIWLQINE 170
Query: 299 ----------CWARNEQGSQRTPCTFHVVKAGEC 322
+ + + E
Sbjct: 171 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA 204
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 74.0 bits (181), Expect = 5e-15
Identities = 50/319 (15%), Positives = 89/319 (27%), Gaps = 38/319 (11%)
Query: 12 PVCKQSQ-QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS 70
CK+ + + I + NE + C ++ N TW ++S T + I
Sbjct: 4 DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63
Query: 71 VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNAS 130
+ + P + G C RN R + V+ + +
Sbjct: 64 L-WFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE---------NEPNLCYNAQAIFKQ 113
Query: 131 VLNEGVDIYFDCHIQANP-----PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRH 185
L D C KL W + + + + L++ +V
Sbjct: 114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-NIHFSGVKDRLIVMNVAEK 172
Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDE---PVCKQSQQRIYGALRNEQV 242
G Y C A + I +++ I ++ PV Q+
Sbjct: 173 HRGNYTCHASYTYLGKQY-----PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQI 227
Query: 243 LVSCTVDANPQAQYFTWAFNNS---DTAPRPLTSYSIQDGSTSVARYTPTSELE------ 293
+ C V W +N S + P Y + + R T + L
Sbjct: 228 QLICNVTGQLSDI-AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES 286
Query: 294 ---YGTLLCWARNEQGSQR 309
C+A+N G
Sbjct: 287 RFYKHPFTCFAKNTHGIDA 305
Score = 35.5 bits (81), Expect = 0.024
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 221 IDEPVCKQSQ-QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDG 279
++ CK+ + + I + NE + C ++ N TW ++S T + I
Sbjct: 1 LEADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 280 STSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA 319
+ + P + G C RN R + V+
Sbjct: 61 KEKL-WFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 99
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 72.6 bits (178), Expect = 1e-14
Identities = 47/297 (15%), Positives = 86/297 (28%), Gaps = 26/297 (8%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGSTSVARYTPTSELE 81
E C V + + + +W N S+ D +S + +
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 82 YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFD 141
G C E G Q + + + K + + EG D
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIF----QKLMFKNAPTPQ--------EFKEGEDAVIV 121
Query: 142 CHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
C + ++ P +IW H G + +++N L ++ + + G Y C
Sbjct: 122 CDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
+ K + +I N +QS A + V + C D P+ +W
Sbjct: 181 EINF-------KDIQVIVNVPPTVQARQSIVNAT-ANLGQSVTLVCDADGFPEPT-MSWT 231
Query: 261 FNNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
+ I +S + + +C A N+ G Q V
Sbjct: 232 KDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 66.4 bits (162), Expect = 1e-12
Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 21/193 (10%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIITNQ----TLVLQSVTRH 185
++ G +F C + + K + W NG +S N ++ N TL + +
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
G+Y C G ++ I L+F + P Q+ G E ++
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIF--QKLMF--KNAP---TPQEFKEG----EDAVIV 121
Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNE 304
C V ++ W D + + + + + T E GT C R
Sbjct: 122 CDVVSSLPPTI-IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE---GTYRCEGRIL 177
Query: 305 QGSQRTPCTFHVV 317
+ V+
Sbjct: 178 ARGEINFKDIQVI 190
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 70.6 bits (173), Expect = 2e-14
Identities = 37/193 (19%), Positives = 58/193 (30%), Gaps = 14/193 (7%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-Y 82
+ C +P+ + W + + DGS SV R P
Sbjct: 18 GVSGGVASFICQATGDPRPK-IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
C A N G V E + P P++ + V C
Sbjct: 77 AIYECVASNNVGEISVSTRLTV--LREDQIPRGFPTIDMGP---QLKVV-ERTRTATMLC 130
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIIT-----NQTLVLQSVTRHSGGLYACSAINS 197
NP ++ W + + + + + GRI L ++ G Y C A NS
Sbjct: 131 AASGNPD-PEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNS 189
Query: 198 QGEGGSTPFDLNI 210
G S P +L +
Sbjct: 190 AGTRYSAPANLYV 202
Score = 33.6 bits (77), Expect = 0.065
Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 2/82 (2%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE-Y 294
+ C +P+ + W + + DGS SV R P
Sbjct: 18 GVSGGVASFICQATGDPRPK-IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76
Query: 295 GTLLCWARNEQGSQRTPCTFHV 316
C A N G V
Sbjct: 77 AIYECVASNNVGEISVSTRLTV 98
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 72.6 bits (178), Expect = 3e-14
Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 31/290 (10%)
Query: 24 ALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY 82
+ + C P W ++ + +G +
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVI-FWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDM--Q 184
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
C AR + +K ++ + ++ ++ G+D+ +C
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC 244
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG 202
P + W G + ++ A N+ L + +V+ G Y C A N G
Sbjct: 245 IASGVPT-PDIAWYKKGGDLPSD-KAKFENFNKALRITNVSEEDSGEYFCLASNKMGS-- 300
Query: 203 STPFDLNINKMVNLIFNS----IDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258
I +++ + +DEP ++ G E + C + NP+
Sbjct: 301 -------IRHTISVRVKAAPYWLDEP---KNLILAPG----EDGRLVCRANGNPKPTV-Q 345
Query: 259 WAFNNSDTAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
W N P + + +S C NE G
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSR---AVYQCNTSNEHGY 392
Score = 72.6 bits (178), Expect = 3e-14
Identities = 51/299 (17%), Positives = 90/299 (30%), Gaps = 24/299 (8%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVARYTPTSELE 81
+ +L+ C NP + W N+ A P S + G+ + + E
Sbjct: 29 VDPRDNILIECEAKGNPAPSF-HWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE 87
Query: 82 Y-GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
Y G C+ARN+ G + + + + NL+ V+ EG +
Sbjct: 88 YEGEYQCFARNKFGTALS-NRIRLQVSK----------SPLWPKENLDPVVVQEGAPLTL 136
Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRH-SGGLYACSAINSQG 199
C+ P + W + + N L +V Y+C+A
Sbjct: 137 QCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFT 196
Query: 200 E--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
PF L + + + + + LR +L+ C P
Sbjct: 197 HTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM-VLRGMDLLLECIASGVPTPD-I 254
Query: 258 TWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
W D P + + + + + G C A N+ GS R + V
Sbjct: 255 AWYKKGGD-LPSDKAKFENFNKALRITNVSEEDS---GEYFCLASNKMGSIRHTISVRV 309
Score = 50.3 bits (120), Expect = 5e-07
Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 21/195 (10%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNG--ITISNNASAGRIITNQTLVLQSVTRHS-- 186
+++ +I +C + NP WT N I+ + + TLV+ +
Sbjct: 28 IVDPRDNILIECEAKGNPAP-SFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPE 86
Query: 187 --GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLV 244
G Y C A N G S L ++K K++ + + +
Sbjct: 87 EYEGEYQCFARNKFGTALSNRIRLQVSKS---------PLWPKENLDPVV-VQEGAPLTL 136
Query: 245 SCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 303
C P W ++ + + +G + C AR
Sbjct: 137 QCNPPPGLPSPVI-FWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD--MQTDYSCNARF 193
Query: 304 EQGSQRTPCTFHVVK 318
+K
Sbjct: 194 HFTHTIQQKNPFTLK 208
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 68.4 bits (167), Expect = 7e-14
Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 35/188 (18%)
Query: 25 LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYG 83
+ E V ++C + + W F+N + +S +I + + Y
Sbjct: 17 FKGENVTLTCNGNNFFEVSSTKW-FHNGSLSEETNSSLNIVNAKFEDSGEYK-------- 67
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
C + PV L +A V+ EG ++ CH
Sbjct: 68 ---CQHQQ----------------VNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH 108
Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS 203
N K+I+ +G + N + + + T G Y C+ Q + S
Sbjct: 109 GWRNWDVYKVIYYKDGEALKYWYE------NHNISITNATVEDSGTYYCTGKVWQLDYES 162
Query: 204 TPFDLNIN 211
P ++ +
Sbjct: 163 EPLNITVI 170
Score = 56.8 bits (137), Expect = 7e-10
Identities = 30/197 (15%), Positives = 52/197 (26%), Gaps = 40/197 (20%)
Query: 115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN 174
KP V + N + + +G ++ C+ W HNG TN
Sbjct: 3 QKPKVSL----NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TN 50
Query: 175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIY 234
+L + + G Y C S P L + L+ S E V
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDWLLLQAS-AEVV--------- 97
Query: 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVA-RYTPTSEL 292
+ + + + C N + + SI + + + Y
Sbjct: 98 --MEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYY----- 150
Query: 293 EYGTLLCWARNEQGSQR 309
C + Q
Sbjct: 151 ------CTGKVWQLDYE 161
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 67.9 bits (166), Expect = 1e-13
Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 15/178 (8%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGST-SVARYTPTSELEY 82
+ E V C V ++P +W ++N +++ + + + E
Sbjct: 14 FKQGEDAEVVCRVSSSPAPAV-SWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE--- 69
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
G C R E + V+ V+ P I + + + G ++ F C
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIVI--------VNVPPA-ISMPQKSFNATAERGEEMTFSC 120
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
+P + W NG I N +N L ++++ GG Y C A N GE
Sbjct: 121 RASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 177
Score = 57.5 bits (139), Expect = 5e-10
Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 20/181 (11%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG-RIITNQTLVLQSVTRHSGGLYAC 192
+G D C + ++P + W ++ ++ + ++ N L + ++ + G+Y C
Sbjct: 16 QGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 74
Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
+ + +I N Q A R E++ SC +P
Sbjct: 75 EGRVEARGEIDF-------RDIIVIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGSP 126
Query: 253 QAQYFTWAFNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
+ +W N + + Y ++ +T + + G +C A N+ G
Sbjct: 127 EPA-ISWFRNG-----KLIEENEKYILKGSNTEL-TVRNIINSDGGPYVCRATNKAGEDE 179
Query: 310 T 310
Sbjct: 180 K 180
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 67.4 bits (164), Expect = 2e-13
Identities = 27/194 (13%), Positives = 56/194 (28%), Gaps = 27/194 (13%)
Query: 130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGG 188
+V + G I C + + W G+ + +A + Q + + G
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-----LPGQKTEFKVDSDDQWG 62
Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
Y+C + G+ L+ V + +S E ++ C
Sbjct: 63 EYSCVFLPE--PMGTANIQLHGPPRVKAVKSSEH-------------INEGETAMLVCKS 107
Query: 249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT------PTSELEYGTLLCWAR 302
++ P + W + + +S + E + G C
Sbjct: 108 ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGT 167
Query: 303 NEQGSQRTPCTFHV 316
+ +GS + T V
Sbjct: 168 SSKGSDQAIITLRV 181
Score = 36.9 bits (85), Expect = 0.004
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 6/87 (6%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT------PT 77
E ++ C ++ P + W + + +S +
Sbjct: 95 INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLN 154
Query: 78 SELEYGTLLCWARNEQGNQRTPCTFHV 104
E + G C + +G+ + T V
Sbjct: 155 MEADPGQYRCNGTSSKGSDQAIITLRV 181
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 66.8 bits (163), Expect = 2e-13
Identities = 28/187 (14%), Positives = 53/187 (28%), Gaps = 35/187 (18%)
Query: 25 LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYG 83
L+ + V ++C +P++ W N + P + + + YT
Sbjct: 17 LQEDSVTLTCQGARSPESDSIQWFHNGN-LIPTHTQPSYRFKANNNDSGEYT-------- 67
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
C + P V+ + +Q EG I CH
Sbjct: 68 ---CQTGQ--TSLSDPVHLTVL--------FEWLVLQTP------HLEFQEGETIMLRCH 108
Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS 203
+ P K+ + NG + + + T + G Y C+ S
Sbjct: 109 SWKDKPLVKVTFFQNGKSQKFSHL------DPTFSIPQANHSHSGDYHCTGNIGYTLFSS 162
Query: 204 TPFDLNI 210
P + +
Sbjct: 163 KPVTITV 169
Score = 57.9 bits (140), Expect = 3e-10
Identities = 25/178 (14%), Positives = 42/178 (23%), Gaps = 36/178 (20%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
+ + C +P + W HNG I Q + G Y C
Sbjct: 18 QEDSVTLTCQGARSPESDSIQWFHNGNLIPT--------HTQPSYRFKANNNDSGEYTCQ 69
Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
+ S P L + ++ E E +++ C +
Sbjct: 70 TGQTS---LSDPVHLTVLFEWLVLQTPHLE------------FQEGETIMLRCHSWKDKP 114
Query: 254 AQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVA-RYTPTSELEYGTLLCWARNEQGSQR 309
T+ N L +SI + S + Y C
Sbjct: 115 LVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYH-----------CTGNIGYTLFS 161
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 67.6 bits (165), Expect = 4e-13
Identities = 41/292 (14%), Positives = 71/292 (24%), Gaps = 60/292 (20%)
Query: 25 LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 84
+ E V + C V P + W N + S + + EY
Sbjct: 14 FQEETVTLHCEVLHLPGSSSTQWFLNG-----TATQT---STPSYRITSASVNDSGEY-- 63
Query: 85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
C + H +Q+ + V EG + CH
Sbjct: 64 -RCQRGLSGRSDPIQLEIHR----------GWLLLQVS------SRVFTEGEPLALRCHA 106
Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
+ +++ NG N L + G Y CS + S
Sbjct: 107 WKDKLVYNVLYYRNGKAFKFFHW------NSNLTILKTNISHNGTYHCSGMGKHRY-TSA 159
Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA--QYFTWAFN 262
+ + ++ + + + G V +SC Q ++F
Sbjct: 160 GISVTVKELFPAPVLNA-----SVTSPLLEG----NLVTLSCETKLLLQRPGLQLYFSFY 210
Query: 263 NSDTAPRPLTS---YSIQDGSTSVA-RYTPTSELEYGTLLCWARNEQGSQRT 310
R + Y I + Y C A E G+
Sbjct: 211 MGSKTLRGRNTSSEYQILTARREDSGLYW-----------CEAATEDGNVLK 251
Score = 56.5 bits (136), Expect = 2e-09
Identities = 25/187 (13%), Positives = 44/187 (23%), Gaps = 26/187 (13%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVA-RYTPTSELEYGT 84
E + + C + + N S +I + S Y
Sbjct: 97 GEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYH--------- 147
Query: 85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
C + + V P + S L EG + C
Sbjct: 148 --CSGMGKHRYTSAGISVTVK------ELFPAPVLNAS-----VTSPLLEGNLVTLSCET 194
Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
+ L + + + T+ + + R GLY C A G
Sbjct: 195 KLLLQRPGLQLYFSFY--MGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252
Query: 205 PFDLNIN 211
+L +
Sbjct: 253 SPELELQ 259
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 66.5 bits (162), Expect = 5e-13
Identities = 23/185 (12%), Positives = 56/185 (30%), Gaps = 19/185 (10%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSIQ-DGSTSVARYT--PTSELE 81
+ + A+ + FN + + Y + D +T + + +
Sbjct: 19 QVRFWMQAEKLSGNAKV-NYIFNE-----KEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72
Query: 82 YGTLLCWARNEQGNQRTPCTFHV--VKAGECEHPVDKPSVQIKLG----RNLNASVLNEG 135
GT ++ + + K + E + K G L+ V
Sbjct: 73 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV-TGE 131
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI 195
++ C + ++W + IS + TL++ ++ G+Y
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191
Query: 196 NSQGE 200
+ +G+
Sbjct: 192 DDRGK 196
Score = 54.6 bits (131), Expect = 5e-09
Identities = 26/208 (12%), Positives = 61/208 (29%), Gaps = 25/208 (12%)
Query: 125 RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQ 180
++ A + E + F + K+ + N I I + ++
Sbjct: 7 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 66
Query: 181 SVTRHSGGLYACSAINSQGEGGST--PFDLNINKMVNLIFNSIDEPVCKQ----SQQRIY 234
+ G Y + + ST K+ E + KQ + +
Sbjct: 67 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 126
Query: 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS---YSIQDGSTS--VARYTPT 289
VL+ C V + + W + R ++ + +DG + + ++
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDE-----REISVDEKHDFKDGICTLLITEFSKK 181
Query: 290 SELEYGTLLCWARNEQGSQRTPCTFHVV 317
Y ++++G + +V
Sbjct: 182 DAGIYE---VILKDDRGKDK--SRLKLV 204
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 68.4 bits (166), Expect = 7e-13
Identities = 40/295 (13%), Positives = 72/295 (24%), Gaps = 27/295 (9%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
R VLV+C+ Q PL + + Y ++ E
Sbjct: 11 LPRGGSVLVTCSTSC-DQPMLLGI--------ETPLPKKELLLPGNNRKVYELSNVQEDS 61
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
+C++ G V ++ + S G ++ C
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTV------YWTPERVELAP------LPSWQPVGKNLTLRCQ 109
Query: 144 IQANPP--YKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
++ P ++ + + G T + H G ++C
Sbjct: 110 VEGGAPRANLTVVLLRGEKELKREPAVGEP-AEVTTTVLVRRDHHGANFSCRTELDLRPQ 168
Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
G F+ N + P + Q V C++D
Sbjct: 169 GLELFE---NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225
Query: 262 NNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
D P +Y S + + L C SQ T T +
Sbjct: 226 ALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 67.6 bits (164), Expect = 1e-12
Identities = 45/308 (14%), Positives = 78/308 (25%), Gaps = 47/308 (15%)
Query: 10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGST 69
P + Q V C++D P +Y S
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 245
Query: 70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
+ + L C +Q T T + + P+V L
Sbjct: 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI-------YSFPAPNV------ILTK 292
Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
++EG ++ C + A + L+L++ +G
Sbjct: 293 PEVSEGTEVTVKCEAHPRAK---VTLNG--------VPAQPLGPRAQLLLKATPEDNGRS 341
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQ-RIYGALRNEQVLVSCTV 248
++CSA I+K + P + + N Q C
Sbjct: 342 FSCSATLEVAGQ-------LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA 394
Query: 249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ 308
NP + + + P + + GT LC AR+ QG
Sbjct: 395 WGNPLPEL-KCLKDGTFPLPIGES--------------VTVTRDLEGTYLCRARSTQGEV 439
Query: 309 RTPCTFHV 316
T +V
Sbjct: 440 TREVTVNV 447
Score = 55.3 bits (132), Expect = 1e-08
Identities = 31/210 (14%), Positives = 51/210 (24%), Gaps = 37/210 (17%)
Query: 2 VNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS 61
+ S P ++ + +V V C + T +
Sbjct: 276 QTVTIYSFPAPNVILTKPEV---SEGTEVTVKCEAHPRAK---VTLNGVPAQPL------ 323
Query: 62 YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQI 121
G + T E + C A E Q + P +
Sbjct: 324 -----GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE-----LRVLYGPRLDE 373
Query: 122 KLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQS 181
+ E C NP + L +G +
Sbjct: 374 RDCPG--NWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFPL-----------PIGESVT 419
Query: 182 VTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
VTR G Y C A ++QGE + +N+
Sbjct: 420 VTRDLEGTYLCRARSTQGE-VTREVTVNVL 448
Score = 50.3 bits (119), Expect = 4e-07
Identities = 27/293 (9%), Positives = 61/293 (20%), Gaps = 35/293 (11%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLL 86
+ + + C V+ T + L + + + +
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGE---KELKREPAVGEPAEVTTTVLVRRDHHGANFS 158
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C + Q + + + V + ++ VL C +
Sbjct: 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ----LVSPRVLEVDTQGTVVCSLDG 214
Query: 147 NPPYKK--LIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
P + + ++ + G + + G + G
Sbjct: 215 LFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT-QRLTCAVILGNQSQE 273
Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS 264
+ S P ++ + +V V C + T +
Sbjct: 274 TL-------QTVTIYSFPAPNVILTKPEV---SEGTEVTVKCEAHPRAK---VTLNGVPA 320
Query: 265 DTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
G + T E + C A E Q
Sbjct: 321 QPL-----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 67.0 bits (163), Expect = 8e-13
Identities = 49/291 (16%), Positives = 80/291 (27%), Gaps = 49/291 (16%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-YGTLL 86
Q V C++D P +Y D ++ A + T+E E L
Sbjct: 19 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG-NDSFSAKASVSVTAEDEGTQRLT 77
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C +Q T T + + KP V EG ++ C
Sbjct: 78 CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS-------------EGTEVTVKCEAHP 124
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS-QGEGGSTP 205
T NG+ +++ T +G ++CSA G+
Sbjct: 125 RAK-----VTLNGVPAQPLGPRAQLLLKAT------PEDNGRSFSCSATLEVAGQLIHKN 173
Query: 206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265
+ + + D P + N Q C NP + + +
Sbjct: 174 QTRELRVLYGPRLDERDCP---GNWT----WPENSQQTPMCQAWGNPLPEL-KCLKDGTF 225
Query: 266 TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
P + + GT LC AR+ QG T +V
Sbjct: 226 PLPIGES--------------VTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 51.6 bits (123), Expect = 1e-07
Identities = 35/188 (18%), Positives = 52/188 (27%), Gaps = 34/188 (18%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
+V V C + T +G +PL G + T E
Sbjct: 110 VSEGTEVTVKCEAHPRAK---VTL----NGVPAQPL-------GPRAQLLLKATPEDNGR 155
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
+ C A E Q + K E V + N + E C
Sbjct: 156 SFSCSATLEVAGQ------LIHKNQTRELRVLYGPRLDERDCPGNWTWP-ENSQQTPMCQ 208
Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS 203
NP +L +G +VTR G Y C A ++QGE +
Sbjct: 209 AWGNPL-PELKCLKDGTFPL-----------PIGESVTVTRDLEGTYLCRARSTQGE-VT 255
Query: 204 TPFDLNIN 211
+N+
Sbjct: 256 REVTVNVL 263
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 65.2 bits (159), Expect = 1e-12
Identities = 34/197 (17%), Positives = 55/197 (27%), Gaps = 35/197 (17%)
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYAC 192
G ++ F C +P + W NG I N +N L ++++ GG Y C
Sbjct: 17 ERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 75
Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
A N GE L + +P Q + N QV + C + P
Sbjct: 76 RATNKAGE-DEKQAFLQV----------FVQPHIIQLKNET--TYENGQVTLVCDAEGEP 122
Query: 253 QAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL-------------C 299
+ TW + R + +L C
Sbjct: 123 IPEI-TWKRAVDGFTFTE-------GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174
Query: 300 WARNEQGSQRTPCTFHV 316
A + G + +
Sbjct: 175 EAASRIGGHQKSMYLDI 191
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 65.1 bits (159), Expect = 1e-12
Identities = 43/189 (22%), Positives = 66/189 (34%), Gaps = 21/189 (11%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
AL E C V++ PQ + +W N T YSI++ + + + + G
Sbjct: 19 ALVEEVATFMCAVESYPQPEI-SWTRNKILIKLFD-TRYSIRE-NGQLLTILSVEDSDDG 75
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
C A N G C VK KP + R + EG+ C
Sbjct: 76 IYCCTANNGVGGAVESCGALQVKM--------KPKIT----RPPINVKIIEGLKAVLPCT 123
Query: 144 IQANPPYKKLIWTHNGITISNNASAGR--IITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
NP + W + N R ++ + +L + +V + G Y C A NS G
Sbjct: 124 TMGNPKPS-VSWIKGDSALREN---SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Query: 202 GSTPFDLNI 210
S L +
Sbjct: 180 YSKLVKLEV 188
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 65.7 bits (160), Expect = 1e-12
Identities = 30/195 (15%), Positives = 52/195 (26%), Gaps = 33/195 (16%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
G + C +P + W I N L+ +V G Y C
Sbjct: 32 AGQFVKLCCRATGHPFVQ-YQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCR 83
Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCK--------QSQQRIYGALRNEQVLVS 245
N+ S L++ + S+D SQ+ + G +++
Sbjct: 84 VNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPG----STLVLQ 139
Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTS-VARYTPTSELEYGTLLCWARNE 304
C +P Y W N Y + Y C N+
Sbjct: 140 CVAVGSPIPHY-QWFKNELPLTHETKKLYMVPYVDLEHQGTYW-----------CHVYND 187
Query: 305 QGSQRTPCTFHVVKA 319
+ SQ + ++
Sbjct: 188 RDSQDSKKVEIIIDE 202
Score = 64.9 bits (158), Expect = 2e-12
Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 22/191 (11%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
L + V + C +P QY W N I +G+TS + + G
Sbjct: 30 VLAGQFVKLCCRATGHPFVQY-QWFKMNK----------EIPNGNTSELIFNAVHVKDAG 78
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGR---NLNASVLNEGVDIYF 140
+C N + + + V V + + L G +
Sbjct: 79 FYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVL 138
Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
C +P W N + +++ T + ++ V G Y C N +
Sbjct: 139 QCVAVGSPI-PHYQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTYWCHVYNDRDS 190
Query: 201 GGSTPFDLNIN 211
S ++ I+
Sbjct: 191 QDSKKVEIIID 201
Score = 30.2 bits (68), Expect = 0.72
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
L + V + C +P QY W N + I +G+TS + + G
Sbjct: 30 VLAGQFVKLCCRATGHPFVQY-QWFKMNKE----------IPNGNTSELIFNAVHVKDAG 78
Query: 296 TLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYAT 339
+C N + + + V +V +KL
Sbjct: 79 FYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Score = 29.9 bits (67), Expect = 0.97
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 13/81 (16%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS-VARYTPTSELEYGTLL 86
+++ C +P Y W N Y + Y
Sbjct: 134 STLVLQCVAVGSPIPHY-QWFKNELPLTHETKKLYMVPYVDLEHQGTYW----------- 181
Query: 87 CWARNEQGNQRTPCTFHVVKA 107
C N++ +Q + ++
Sbjct: 182 CHVYNDRDSQDSKKVEIIIDE 202
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 66.8 bits (163), Expect = 1e-12
Identities = 45/296 (15%), Positives = 89/296 (30%), Gaps = 30/296 (10%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-DGSTSVARYTPTSELEY 82
E +CT P++ W +N G +Q +G S + +
Sbjct: 16 LSVGESKFFTCTAIGEPES--IDW-YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDA 72
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
G C A + +G + + K + + + +G D C
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQ--------KLTFREVV-SPQ---EFKQGEDAEVVC 120
Query: 143 HIQANPPYKKLIWTHNGITISNNASAG-RIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
+ ++P + W ++ ++ + ++ N L + ++ + G+Y C
Sbjct: 121 RVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGE 179
Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
+ + +I N Q A R E++ SC +P+ +W
Sbjct: 180 IDF-------RDIIVIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGSPEPA-ISWFR 230
Query: 262 NNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
N I GS + + G +C A N+ G V
Sbjct: 231 NGK---LIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 61.4 bits (149), Expect = 6e-11
Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 27/194 (13%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIIT-----NQTLVLQSVTR 184
L+ G +F C P + W + G I + R++ L + +
Sbjct: 15 ELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIIST---QRVVVQKEGVRSRLTIYNANI 69
Query: 185 HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLV 244
G+Y C A +++G+ L I L F + Q+ G E V
Sbjct: 70 EDAGIYRCQATDAKGQTQEATVVLEIY--QKLTF--REVV---SPQEFKQG----EDAEV 118
Query: 245 SCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARN 303
C V ++P +W ++N + +++ + + + E G C R
Sbjct: 119 VCRVSSSPAPAV-SWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE---GIYRCEGRV 174
Query: 304 EQGSQRTPCTFHVV 317
E + V+
Sbjct: 175 EARGEIDFRDIIVI 188
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 66.3 bits (161), Expect = 2e-12
Identities = 40/300 (13%), Positives = 73/300 (24%), Gaps = 48/300 (16%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
+ + ++C W F + + + GT
Sbjct: 27 GDTLSLTCIDPDF-----VRWTF------KTYFNEMVENKKNEWIQEKAEATRT--GTYT 73
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C N + + +V V P+ +G L E D C +
Sbjct: 74 CSNSNGLTS-----SIYVF--------VRDPAKLFLVGLPL---FGKEDSDALVRCPL-T 116
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR-HSGGLYACSAINSQGEGGSTP 205
+P + + +++V R + C+A S
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK 176
Query: 206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265
F L + + + I + + + V CT+ + W N
Sbjct: 177 FTLKVREAIKAIPVVSVPET-------SHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ 229
Query: 266 TAPRPLTSYSIQDGSTSVARYTPTSELE--------YGTLLCWARNEQGSQRTPCTFHVV 317
++ Y L G +C+A N GS T VV
Sbjct: 230 PQHIAQVKHNS--WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 37.0 bits (85), Expect = 0.006
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 10/92 (10%)
Query: 22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE 81
+ + + V CT+ + W P+ + Y L
Sbjct: 198 HLLKKGDTFTVVCTIKDVSTSVNSMWLKM--NPQPQHIAQVKHNSWHRGDFNYERQETLT 255
Query: 82 --------YGTLLCWARNEQGNQRTPCTFHVV 105
G +C+A N G+ T VV
Sbjct: 256 ISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 66.6 bits (162), Expect = 2e-12
Identities = 32/307 (10%), Positives = 88/307 (28%), Gaps = 31/307 (10%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGTL 85
+ C P+++ F+W+ + + ++ G+ + + + G
Sbjct: 18 VISLNFECDK-MTPKSE-FSWSKD--YVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIY 73
Query: 86 LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
C + G + + + + L +L +G ++ +
Sbjct: 74 SCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK 133
Query: 146 ANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGLYACSAINSQGEG 201
+ K + + N I I + ++ + G Y + +
Sbjct: 134 LSGNAK-VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 192
Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIY-------GALRNEQVLVSCTVDANPQA 254
ST L + L + + +Q + VL+ C V +
Sbjct: 193 HST-VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251
Query: 255 QYFTWAFNNSDTAPRPLTS---YSIQDGSTS--VARYTPTSELEYGTLLCWARNEQGSQR 309
+ W + R ++ + +DG + + ++ Y ++++G +
Sbjct: 252 THIVWYKDE-----REISVDEKHDFKDGICTLLITEFSKKDAGIY---EVILKDDRGKDK 303
Query: 310 TPCTFHV 316
+
Sbjct: 304 SRLKLVD 310
Score = 56.9 bits (137), Expect = 2e-09
Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 32/238 (13%)
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSG 187
+ + + F+C + W+ + ++ ++ R+ + + +
Sbjct: 16 DGVISLNFECDKMTPKS--EFSWSKDYVSTEDS---PRLEVESKGNKTKMTFKDLGMDDL 70
Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
G+Y+C ++ G S D K + + + P + L QV
Sbjct: 71 GIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130
Query: 248 VD-ANPQAQYFTWAFNNSDTAPRPLTS---YSIQ-DGSTSVARYT---PTSELEYGTLLC 299
+ + A+ + FN + + Y + D +T + E E GT
Sbjct: 131 AEKLSGNAK-VNYIFNE-----KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDE-GTYTF 183
Query: 300 WARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLMKTNTEVT 357
++ + + + + + + + GP + + EVT
Sbjct: 184 QLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEW-------IRKQGPHFVEYLSWEVT 234
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 65.2 bits (159), Expect = 2e-12
Identities = 42/198 (21%), Positives = 64/198 (32%), Gaps = 23/198 (11%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN----QTLVLQSVTRHS 186
+ G F C + +PP ++W NG +S S ++ L ++ V
Sbjct: 17 GVRVGGVASFYCAARGDPP-PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGR 75
Query: 187 -GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
Y C A N G+ S L I + PV Q VL++
Sbjct: 76 DDAPYECVAENGVGDAVSADATLTIYEGDKT---PAGFPVITQGPGTRV-IEVGHTVLMT 131
Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTS----YSIQDGSTSVARYTPTSELEYGTLLCWA 301
C NP W N + YS++DG + + G C A
Sbjct: 132 CKAIGNPTPN-IYWIKNQ-----TKVDMSNPRYSLKDGFLQIENSREEDQ---GKYECVA 182
Query: 302 RNEQGSQRTPCTFHVVKA 319
N G++ + T VK
Sbjct: 183 ENSMGTEHSKATNLYVKV 200
Score = 61.7 bits (150), Expect = 2e-11
Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 14/192 (7%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGSTSVARYTPTSELE 81
C +P W N + + Y++ Q G S+ R P
Sbjct: 18 VRVGGVASFYCAARGDPPPSI-VWRKNGKKVSGTQ-SRYTVLEQPGGISILRIEPVRAGR 75
Query: 82 -YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
C A N G + + P P + + V+ G +
Sbjct: 76 DDAPYECVAENGVG-DAVSADATLTIYEGDKTPAGFPVIT----QGPGTRVIEVGHTVLM 130
Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLYACSAINSQG 199
C NP + W N + S R + L +++ G Y C A NS G
Sbjct: 131 TCKAIGNPTPN-IYWIKNQTKVD--MSNPRYSLKDGFLQIENSREEDQGKYECVAENSMG 187
Query: 200 EGGSTPFDLNIN 211
S +L +
Sbjct: 188 TEHSKATNLYVK 199
Score = 31.3 bits (71), Expect = 0.36
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS----YSIQDGSTSVARYTPTSE 79
VL++C NP W N + YS++DG + +
Sbjct: 122 IEVGHTVLMTCKAIGNPTPN-IYWIKNQ-----TKVDMSNPRYSLKDGFLQIENSREEDQ 175
Query: 80 LEYGTLLCWARNEQGNQRTPCTFHVVKA 107
G C A N G + + T VK
Sbjct: 176 ---GKYECVAENSMGTEHSKATNLYVKV 200
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 64.7 bits (158), Expect = 2e-12
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 23/184 (12%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVARYTPTSELE 81
L + P + +W + T+ P S DG + ++
Sbjct: 17 VLEGSTATFEAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRAKL-TIPAVTKAN 74
Query: 82 YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFD 141
G A N G + V P+ +L +++ +G +
Sbjct: 75 SGRYSLKATNGSGQATSTAELLVKAETA------PPNFVQRL-QSMTV---RQGSQVRLQ 124
Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSGGLYACSAIN 196
+ P + + +G I ++ +Q +L++ G Y+ +A N
Sbjct: 125 VRVTGIPTPV-VKFYRDGAEIQSS---LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 197 SQGE 200
S G
Sbjct: 181 SVGR 184
Score = 57.0 bits (138), Expect = 7e-10
Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 26/192 (13%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGL 189
EG F+ HI P ++ W +G IS + G I+ L + +VT+ + G
Sbjct: 19 EGSTATFEAHISGFPV-PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGR 77
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNL-IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
Y+ A N G+ ++ +L + F + QS + QV + V
Sbjct: 78 YSLKATNGSGQA-TSTAELLVKAETAPPNF--VQRL---QSMT----VRQGSQVRLQVRV 127
Query: 249 DANPQAQYFTWAFNNSDTAPRPLTS---YSI-QDGSTSVARYTPTSELEYGTLLCWARNE 304
P + + + S + I Q+G + GT A N
Sbjct: 128 TGIPTPV-VKFYRDG-----AEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 305 QGSQRTPCTFHV 316
G + V
Sbjct: 182 VGRATSTAELLV 193
Score = 29.7 bits (67), Expect = 1.0
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNS--DTAPRPLTSYSIQDGSTSVARYTPTSELE 293
L + P + +W + T+ P S DG + ++
Sbjct: 17 VLEGSTATFEAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRAKL-TIPAVTKAN 74
Query: 294 YGTLLCWARNEQGSQRTPCTFHVVKAGE 321
G A N G + V
Sbjct: 75 SGRYSLKATNGSGQATSTAELLVKAETA 102
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 66.5 bits (162), Expect = 2e-12
Identities = 45/315 (14%), Positives = 84/315 (26%), Gaps = 31/315 (9%)
Query: 15 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ--DGS---T 69
K+ RI + + C NP + W ++ GTA + DG
Sbjct: 8 KEPTNRID-FSNSTGAEIECKASGNPMPEI-IWIRSD-GTAVGDVPGLRQISSDGKLVFP 64
Query: 70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
E+ C ARN+ G+ + V+A ++ + +
Sbjct: 65 PFRAEDYRQEVHAQVYACLARNQFGSIISRDV--HVRAVVAQYYEADVNKE--------- 113
Query: 130 SVLNEGVDIYFDCHIQANPPYKKLI--WTHNG--ITISNNASAGR--IITNQTLVLQSVT 183
+ G C I + + W + G+ ++ + L ++ V
Sbjct: 114 -HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172
Query: 184 RH-SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
Y C + G T ++V S P Q+ + +
Sbjct: 173 PEDGYKSYQCRTKHRLT--GETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI 230
Query: 243 LVSCTVDANPQAQYFTWAFNNSDTAP-RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
+ C P + W T + + + + G LC
Sbjct: 231 SLLCPAQGFPAPSF-RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 289
Query: 302 RNEQGSQRTPCTFHV 316
N G + V
Sbjct: 290 NNSVGGESVETVLTV 304
Score = 65.7 bits (160), Expect = 5e-12
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 24/194 (12%)
Query: 8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP-RPLTSYSIQD 66
S+ P Q+ + + + C P + W GT + +
Sbjct: 208 SSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSF-RWYKFIEGTTRKQAVVLNDRVK 266
Query: 67 GSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRN 126
+ + G LC N G + V S +I
Sbjct: 267 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV---------TAPLSAKID---- 313
Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS 186
++ G F C NP K + W +G I ++ L ++SV +
Sbjct: 314 PPTQTVDFGRPAVFTCQYTGNPI-KTVSWMKDGKAIGHS--------ESVLRIESVKKED 364
Query: 187 GGLYACSAINSQGE 200
G+Y C N +
Sbjct: 365 KGMYQCFVRNDRES 378
Score = 58.4 bits (141), Expect = 1e-09
Identities = 39/306 (12%), Positives = 78/306 (25%), Gaps = 64/306 (20%)
Query: 24 ALRNEQVLVSCTVD---ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT--PTS 78
+R ++ C + A+ +W + + +Y P+
Sbjct: 115 VIRGNSAVIKCLIPSFVADFVEVV-SWHTDE-----EENYFPGAEYDG----KYLVLPSG 164
Query: 79 ELE---------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
EL Y + C ++ + P + + L
Sbjct: 165 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224
Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA----SAGRIITNQTLVLQSVTRH 185
V I C Q P W + + + TL+++
Sbjct: 225 MV---AHTISLLCPAQGFPA-PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280
Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNS----IDEPVCKQSQQRIYGALRNEQ 241
G Y C NS G + L + +P +Q +G
Sbjct: 281 DSGKYLCVVNNSVGG---------ESVETVLTVTAPLSAKIDP---PTQTVDFG----RP 324
Query: 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
+ +C NP +W + + + + + + Y C+
Sbjct: 325 AVFTCQYTGNPIKTV-SWMKDG-----KAIGH---SESVLRIESVKKEDKGMYQ---CFV 372
Query: 302 RNEQGS 307
RN++ S
Sbjct: 373 RNDRES 378
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 66.0 bits (160), Expect = 3e-12
Identities = 39/305 (12%), Positives = 77/305 (25%), Gaps = 27/305 (8%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT----PTSE 79
L + + + + W + ++ + + S + PT
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTL-IWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLL 88
Query: 80 LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
+ G C RN + VV+ C + K V +
Sbjct: 89 NDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI----TCPN 144
Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ- 198
D + ++ + W I N + I L + G Y C +
Sbjct: 145 VDGYFPSSVKP-TITWYMGCYKIQNFNN--VIPEGMNLSFLIALISNNGNYTCVVTYPEN 201
Query: 199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ--- 255
G L + + + +Y E++L+ CTV +
Sbjct: 202 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPN-DHVVYEKEPGEELLIPCTVYFSFLMDSRN 260
Query: 256 YFTWAFNNSD-TAPRPLTSYSIQDGSTSVARYTPTSEL---------EYGTLLCWARNEQ 305
W + + + + T T L + +C AR+ +
Sbjct: 261 EVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320
Query: 306 GSQRT 310
G
Sbjct: 321 GEVAK 325
Score = 28.3 bits (62), Expect = 3.9
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT----PTSE 291
L + + + + W + D ++ + + S + PT
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTL-IWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLL 88
Query: 292 LEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHP 325
+ G C RN + VV+ C +
Sbjct: 89 NDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNS 122
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 63.2 bits (154), Expect = 6e-12
Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 25/193 (12%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
+ C + +P P + W G I + RI + L++ SVT
Sbjct: 18 YQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75
Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
+Y A N G S L + + I P + ++ ALR E V +
Sbjct: 76 VYQVRATNQGGS-VSGTASLEV-----EVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPF 128
Query: 249 DANPQAQYFTWAFNNSDTAPRPLTS---YSI-QDGSTSVARY-TPTSELEYGTLLCWARN 303
P TW + + Y + S + + + G + A+N
Sbjct: 129 SGKPDPV-ITWQKGQ-----DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 304 EQGSQRTPCTFHV 316
G + V
Sbjct: 183 RFGIDQKTVELDV 195
Score = 27.4 bits (61), Expect = 6.8
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSI-QDGSTSVARY-TPTS 78
ALR E V + P TW + + Y + S + +
Sbjct: 116 ALRGEVVSIKIPFSGKPDPV-ITWQKGQ-----DLIDNNGHYQVIVTRSFTSLVFPNGVE 169
Query: 79 ELEYGTLLCWARNEQGNQRTPCTFHV 104
+ G + A+N G + V
Sbjct: 170 RKDAGFYVVCAKNRFGIDQKTVELDV 195
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 62.5 bits (152), Expect = 8e-12
Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 21/193 (10%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIITNQ----TLVLQSVTRH 185
++ G +F C + + K + W NG +S N ++ N TL + +
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
G+Y C G ++ I L+F + P Q+ G E ++
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIF--QKLMF--KNAP---TPQEFKEG----EDAVIV 121
Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGTLLCWARNE 304
C V ++ W D + + + + + T E GT C R
Sbjct: 122 CDVVSSLPPTI-IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE---GTYRCEGRIL 177
Query: 305 QGSQRTPCTFHVV 317
+ V+
Sbjct: 178 ARGEINFKDIQVI 190
Score = 61.4 bits (149), Expect = 2e-11
Identities = 33/182 (18%), Positives = 54/182 (29%), Gaps = 22/182 (12%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGSTSVARYTPTSELE 81
E C V + + + +W N S+ D +S + +
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 82 YGTLLCWARNEQGNQRTPCTFHVVKAGECEHP--VDKPSVQIKLGRNLNASVLNEGVDIY 139
G C E G Q T +V + + P+ Q EG D
Sbjct: 74 AGIYKCVVTAEDGTQSE-ATVNVKIF---QKLMFKNAPTPQ----------EFKEGEDAV 119
Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINS 197
C + ++ P +IW H G + R I N L ++ + + G Y C
Sbjct: 120 IVCDVVSSLPPT-IIWKHKGRDVILKKD-VRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 198 QG 199
Sbjct: 178 AR 179
Score = 29.4 bits (66), Expect = 1.3
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 5/83 (6%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-DGSTSVARYTPTSELEY 82
E ++ C V ++ W + + + + + T E
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTI-IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE--- 167
Query: 83 GTLLCWARNEQGNQRTPCTFHVV 105
GT C R + V+
Sbjct: 168 GTYRCEGRILARGEINFKDIQVI 190
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 64.1 bits (156), Expect = 1e-11
Identities = 29/194 (14%), Positives = 51/194 (26%), Gaps = 39/194 (20%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
N QV + C + P + TW G + R +
Sbjct: 12 TYENGQVTLVCDAEGEPIPE-ITWKRAVDGFTFTE-------GDKSLDGRIEVKGQHGSS 63
Query: 84 TLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNAS 130
+L C A + G + + P
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI---------EYAPKFISN----QTIY 110
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHS 186
EG I C +++NPP + W + + + + + L + + +
Sbjct: 111 YSWEGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169
Query: 187 GGLYACSAINSQGE 200
G Y C+A N G
Sbjct: 170 FGRYNCTATNHIGT 183
Score = 58.3 bits (141), Expect = 1e-09
Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 24/194 (12%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNG----ITISNNASAGRII-----TNQTLVLQSVTR 184
E + C + P ++ W T + + GRI + +L ++ V
Sbjct: 14 ENGQVTLVCDAEGEPI-PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 185 HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLV 244
G Y C A + G K + L P +Q Y + + +
Sbjct: 73 SDSGRYDCEAASRIG---------GHQKSMYLDIE--YAPKFISNQTIYY-SWEGNPINI 120
Query: 245 SCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGTLLCWARN 303
SC V +NP A W + + T+ G + PTS+ ++G C A N
Sbjct: 121 SCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 304 EQGSQRTPCTFHVV 317
G++ +
Sbjct: 180 HIGTRFQEYILALA 193
Score = 33.6 bits (77), Expect = 0.085
Identities = 12/94 (12%), Positives = 21/94 (22%), Gaps = 21/94 (22%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
N QV + C + P + TW + R +
Sbjct: 12 TYENGQVTLVCDAEGEPIPE-ITWKRAVDGFTFTE-------GDKSLDGRIEVKGQHGSS 63
Query: 296 TLL-------------CWARNEQGSQRTPCTFHV 316
+L C A + G + +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 61.4 bits (149), Expect = 1e-11
Identities = 28/184 (15%), Positives = 48/184 (26%), Gaps = 35/184 (19%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYGTLL 86
+ V + C +P+ W F+N +SY I + + + Y
Sbjct: 23 DSVTLKCQGAYSPEDNSTQW-FHNESLISSQASSYFIDAATVNDSGEYR----------- 70
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C + + V + + V E I+ CH
Sbjct: 71 CQTNLSTLSD----PVQLE--------VHIGWLLL----QAPRWVFKEEDPIHLRCHSWK 114
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
N K+ + NG N + T G Y C + S
Sbjct: 115 NTALHKVTYLQNGKDRKYFHH------NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 168
Query: 207 DLNI 210
++ I
Sbjct: 169 NITI 172
Score = 55.3 bits (133), Expect = 2e-09
Identities = 26/178 (14%), Positives = 44/178 (24%), Gaps = 36/178 (20%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
E + C +P W HN IS+ + + + T + G Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ--------ASSYFIDAATVNDSGEYRCQ 72
Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
S S P L ++ L+ + + + C N
Sbjct: 73 TNLST---LSDPVQLEVHIGWLLLQAPRWV------------FKEEDPIHLRCHSWKNTA 117
Query: 254 AQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVA-RYTPTSELEYGTLLCWARNEQGSQR 309
T+ N D S + I + + Y C +
Sbjct: 118 LHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYF-----------CRGLVGSKNVS 164
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 62.9 bits (153), Expect = 3e-11
Identities = 29/185 (15%), Positives = 44/185 (23%), Gaps = 22/185 (11%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY-----TPTS 78
+ C V +P+ W L Y IQ+ + T
Sbjct: 16 VRYQSNATLVCKVTGHPKPI-VKWYRQGKEIIADGLK-YRIQEFKGGYHQLIIASVTDDD 73
Query: 79 ELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI 138
Y A N+ G+ + V ++ + G +
Sbjct: 74 ATVY---QVRATNQGGSVSGTASLEVE-----VPAKIHLPKTLEGMGAV---HALRGEVV 122
Query: 139 YFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN---QTLVLQSVTRHSGGLYACSAI 195
P + W I NN I+T + V R G Y A
Sbjct: 123 SIKIPFSGKPD-PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 196 NSQGE 200
N G
Sbjct: 182 NRFGI 186
Score = 60.2 bits (146), Expect = 2e-10
Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 13/178 (7%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSVTRHSGGL 189
+ C + +P + W G I + RI L++ SVT +
Sbjct: 18 YQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
Y A N G S L + + I P + ++ ALR E V +
Sbjct: 77 YQVRATNQGGS-VSGTASLEVE-----VPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPFS 129
Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
P TW + TS+ + G + A+N G
Sbjct: 130 GKPDPV-ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI 186
Score = 33.2 bits (76), Expect = 0.10
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 10/89 (11%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARY-----TPTS 290
+ C V +P+ W + L Y IQ+ + T
Sbjct: 16 VRYQSNATLVCKVTGHPKPI-VKWYRQGKEIIADGLK-YRIQEFKGGYHQLIIASVTDDD 73
Query: 291 ELEYGTLLCWARNEQGSQRTPCTFHVVKA 319
Y A N+ GS + V
Sbjct: 74 ATVY---QVRATNQGGSVSGTASLEVEVP 99
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 61.1 bits (148), Expect = 6e-11
Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 32/205 (15%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI---ITNQTLVLQSVTRHSG 187
+ + F C NP + W NG G + +L+++SV
Sbjct: 30 AVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
G Y C N G +N ++++ S P+ + + V C
Sbjct: 89 GNYTCVVENEYGS-------INHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK 141
Query: 248 VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS--TSVARYTPTSELEYGTLL------- 298
V ++ Q W + S DG V +++ + L
Sbjct: 142 VYSDAQPH-IQWIKHVE-----KNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA 195
Query: 299 ------CWARNEQGSQRTPCTFHVV 317
C N G V+
Sbjct: 196 DAGEYICKVSNYIGQANQSAWLTVL 220
Score = 50.3 bits (120), Expect = 2e-07
Identities = 37/196 (18%), Positives = 53/196 (27%), Gaps = 43/196 (21%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGST----SV-----ARYTP 76
V C NP W N R + SV YT
Sbjct: 35 NTVKFRCPAGGNPMPTM-RWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT- 92
Query: 77 TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
C NE G+ VV E +P +Q L N + G
Sbjct: 93 ----------CVVENEYGSINHTYHLDVV-----ERSRHRPILQAGLPANASTV---VGG 134
Query: 137 DIYFDCHIQANPP----------YKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTR 184
D+ F C + ++ + +G+ I + + L L +VT
Sbjct: 135 DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE 194
Query: 185 HSGGLYACSAINSQGE 200
G Y C N G+
Sbjct: 195 ADAGEYICKVSNYIGQ 210
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 60.1 bits (146), Expect = 7e-11
Identities = 35/188 (18%), Positives = 51/188 (27%), Gaps = 32/188 (17%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSI-QDGSTSVARYTPTSE 79
E +SC + P W + L Y + DG T +
Sbjct: 19 TKLGEAAQLSCQIVGRPLPDI-KWYRFG-----KELIQSRKYKMSSDGRTHTLTVMTEEQ 72
Query: 80 LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
+ G C A NE G T + P P +K G +
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKLLLQAT-----PQFHPGYPLK-----EKYYGAVGSTLR 122
Query: 140 FDCHIQANP-PYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHS-GGLYAC 192
P P + W H + N+ I LV+++V R + G Y
Sbjct: 123 LHVMYIGRPVP--AMTWFHGQKLLQNS---ENITIENTEHYTHLVMKNVQRKTHAGKYKV 177
Query: 193 SAINSQGE 200
N G
Sbjct: 178 QLSNVFGT 185
Score = 59.7 bits (145), Expect = 9e-11
Identities = 26/197 (13%), Positives = 48/197 (24%), Gaps = 29/197 (14%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRH 185
G C I P + W G + + + + TL + + +
Sbjct: 18 TTKLGEAAQLSCQIVGRPL-PDIKWYRFGKELIQS---RKYKMSSDGRTHTLTVMTEEQE 73
Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
G+Y C A N GE T L + + + + +
Sbjct: 74 DEGVYTCIATNEVGE-VETSSKLLL-----QATPQFHPGYPLKEKYY---GAVGSTLRLH 124
Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTS---YSI--QDGSTSVARYTPTSELEYGTLLCW 300
P TW + L + +I + T + + G
Sbjct: 125 VMYIGRPVPAM-TWFHGQ-----KLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQ 178
Query: 301 ARNEQGSQRTPCTFHVV 317
N G+ +
Sbjct: 179 LSNVFGTVDAILDVEIQ 195
Score = 29.7 bits (67), Expect = 1.2
Identities = 9/87 (10%), Positives = 18/87 (20%), Gaps = 11/87 (12%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSI--QDGSTSVARYTPTS 78
+ + P TW + L + +I + T +
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAM-TWFHGQ-----KLLQNSENITIENTEHYTHLVMKNVQR 168
Query: 79 ELEYGTLLCWARNEQGNQRTPCTFHVV 105
+ G N G +
Sbjct: 169 KTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 59.9 bits (145), Expect = 9e-11
Identities = 29/184 (15%), Positives = 48/184 (26%), Gaps = 35/184 (19%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYGTLL 86
+ V + C +P+ Q W F+N +SY I + + Y
Sbjct: 23 DSVTLKCQGAYSPEDQSTQW-FHNESLISSQASSYFIDAATVDDSGEYR----------- 70
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C + + H+ + + V E I+ CH
Sbjct: 71 CQTQLSTLSDPVQLEVHI------GWLLLQAP----------RWVFKEEDPIHLRCHSWK 114
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
N K+ + NG N + T G Y C + S
Sbjct: 115 NTALHKVTYLQNGKGRKYFHH------NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETV 168
Query: 207 DLNI 210
+ I
Sbjct: 169 QITI 172
Score = 53.7 bits (129), Expect = 1e-08
Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 40/196 (20%)
Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ 175
K V + + E + C +P + W HN IS+
Sbjct: 7 KAVVFL----EPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------AS 54
Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
+ + + T G Y C S S P L + + Q+ + ++
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLST---LSDPVQLEV----------HIGWLLLQAPRWVF- 100
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVA-RYTPTSELE 293
+ + + C N T+ N S + I + + Y
Sbjct: 101 -KEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYF------ 153
Query: 294 YGTLLCWARNEQGSQR 309
C +
Sbjct: 154 -----CRGLVGSKNVS 164
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 59.4 bits (143), Expect = 1e-10
Identities = 26/205 (12%), Positives = 55/205 (26%), Gaps = 23/205 (11%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
N+ + C + L + + + + + + S G+
Sbjct: 20 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMV 79
Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
C A + S + +V ++ I + V S E+++++CT
Sbjct: 80 FCEAKINDESYQSIMY------IVVVVGYRIYDVVLSPSHGIE--LSVGEKLVLNCTART 131
Query: 251 NPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE--------YGTLLCWA 301
F W + +S + S L G C A
Sbjct: 132 ELNVGIDFNWEYPSSKH-QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190
Query: 302 RNEQGSQRTPCTFHVVKAGECEHPV 326
+ +++ V E P+
Sbjct: 191 SSGLMTKKNSTFVRVH-----EDPI 210
Score = 38.6 bits (89), Expect = 0.002
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 15/101 (14%)
Query: 24 ALRNEQVLVSCTVDANPQAQY-FTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE- 81
E+++++CT F W + + + S L
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFNWEYPS-SKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 175
Query: 82 -------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVD 115
G C A + ++ V E P++
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----EDPIE 211
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 59.1 bits (143), Expect = 2e-10
Identities = 33/187 (17%), Positives = 54/187 (28%), Gaps = 13/187 (6%)
Query: 134 EGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLY 190
EG + C + P W N + R ++ N L + +V G Y
Sbjct: 22 EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNY 81
Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
+C + + + + P Q + AL + V + C
Sbjct: 82 SCFVSSPSITKSVFSKFIPLI--PIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG 139
Query: 251 NPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNEQGSQR 309
NP W P P T+ G+ + E G C A N +G +
Sbjct: 140 NPVPDI-RWRKVLE---PMPSTAEISTSGAVLKIFNIQLEDE---GIYECEAENIRGKDK 192
Query: 310 TPCTFHV 316
+V
Sbjct: 193 HQARIYV 199
Score = 55.7 bits (134), Expect = 2e-09
Identities = 24/194 (12%), Positives = 62/194 (31%), Gaps = 15/194 (7%)
Query: 11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQY-FTWAFNNSGTAPRPLTSYSIQDGST 69
+P + + + + +++ C + + W N + +
Sbjct: 8 DPFPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 70 S--VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNL 127
+ +A + + G C+ + + F + P+ + +++
Sbjct: 67 NLYIANVEASDK---GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV 123
Query: 128 NASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS 186
A G ++ +C NP P + W + + A + L + ++
Sbjct: 124 YA---LMGQNVTLECFALGNPVP--DIRWRKVLEPMPSTAE--ISTSGAVLKIFNIQLED 176
Query: 187 GGLYACSAINSQGE 200
G+Y C A N +G+
Sbjct: 177 EGIYECEAENIRGK 190
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 60.5 bits (146), Expect = 2e-10
Identities = 43/320 (13%), Positives = 78/320 (24%), Gaps = 49/320 (15%)
Query: 24 ALRNEQVLVSCT-------VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTP 76
L E V + C +P+ TW N+S + P
Sbjct: 30 RLEGEPVALRCPQVPYWLWASVSPRINL-TWHKNDSARTVPGEEETRMW-AQDGALWLLP 87
Query: 77 TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
+ + GT +C RN + V + + P + L + +
Sbjct: 88 ALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPD--- 144
Query: 137 DIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGLYACS 193
+ K+ W + + + + ++ L++ V G Y C
Sbjct: 145 ---LSEFTRDKTDV-KIQWYKDSLLLDK--DNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198
Query: 194 AINSQGEGGST---PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
+ +L I K I P ++ G ++ + C V
Sbjct: 199 LTFAHEGQQYNITRSIELRIKKKKEETIPVIISP--LKTISASLG----SRLTIPCKVFL 252
Query: 251 NPQAQ--YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL---------- 298
W N + +G Y+ +E L
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEG--PRQEYSENNENYIEVPLIFDPVTREDL 310
Query: 299 -----CWARNEQGSQRTPCT 313
C N Q T
Sbjct: 311 HMDFKCVVHNTLSFQTLRTT 330
Score = 48.5 bits (115), Expect = 1e-06
Identities = 30/228 (13%), Positives = 50/228 (21%), Gaps = 38/228 (16%)
Query: 103 HVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-------QANPPYKKLIW 155
H A C + +L EG + C +P L W
Sbjct: 11 HTGAARSCRFRGRHYKREFRL----------EGEPVALRCPQVPYWLWASVSPRIN-LTW 59
Query: 156 THNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKM 213
N + + + L L + G Y C+ N+
Sbjct: 60 HKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC---------DKMS 110
Query: 214 VNLIFNSIDEPVCKQSQQRIYGALRNEQVLV----SCTVDANPQAQYFTWAFNNSDTAPR 269
+ L + L VLV S + W ++
Sbjct: 111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK-IQWYKDSLLLDKD 169
Query: 270 PLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
S++ + V G C Q+ T +
Sbjct: 170 NEKFLSVRGTTHLLVHDVALEDA---GYYRCVLTFAHEGQQYNITRSI 214
Score = 30.4 bits (68), Expect = 0.84
Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 5/135 (3%)
Query: 203 STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG---ALRNEQVLVSCTVDANPQAQYFTW 259
+ PF L + + + R+ G ALR QV +P+ TW
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINL-TW 59
Query: 260 AFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA 319
N+S + P + + GT +C RN + V +
Sbjct: 60 HKNDSARTVPGEEETRMW-AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN 118
Query: 320 GECEHPVAVSHRYVA 334
+ P + +
Sbjct: 119 TDAFLPFISYPQILT 133
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 59.2 bits (143), Expect = 2e-10
Identities = 34/202 (16%), Positives = 55/202 (27%), Gaps = 27/202 (13%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII---TNQTLVLQSVTRHSG 187
+ + F C NP + W NG G I +LV++SV
Sbjct: 26 AVPAANTVRFRCPAAGNPT-PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84
Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
G Y C N G + ++++ S P+ + A+ V C
Sbjct: 85 GNYTCVVENKFGS-------IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK 137
Query: 248 VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL--------- 298
V ++ Q W + + + T + + S L
Sbjct: 138 VYSDAQPH-IQWLKHVEVNGSKVGPDGTPY--VTVLKSWISESVEADVRLRLANVSERDG 194
Query: 299 ----CWARNEQGSQRTPCTFHV 316
C A N G V
Sbjct: 195 GEYLCRATNFIGVAEKAFWLSV 216
Score = 51.9 bits (124), Expect = 6e-08
Identities = 41/198 (20%), Positives = 61/198 (30%), Gaps = 46/198 (23%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYSIQDGS---TSVAR-----YTP 76
V C NP +W N G Q S SV YT
Sbjct: 31 NTVRFRCPAAGNPTPSI-SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT- 88
Query: 77 TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
C N+ G+ R T V+ E +P +Q L N A G
Sbjct: 89 ----------CVVENKFGSIRQTYTLDVL-----ERSPHRPILQAGLPANQTA---VLGS 130
Query: 137 DIYFDCHIQANPPYKKLIWTHNG--------------ITISNNASAGRIITNQTLVLQSV 182
D+ F C + ++ + W + +T+ + + + + L L +V
Sbjct: 131 DVEFHCKVYSDAQ-PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV 189
Query: 183 TRHSGGLYACSAINSQGE 200
+ GG Y C A N G
Sbjct: 190 SERDGGEYLCRATNFIGV 207
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 59.7 bits (144), Expect = 3e-10
Identities = 27/196 (13%), Positives = 58/196 (29%), Gaps = 30/196 (15%)
Query: 12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSV 71
+ +++ ++ + C V +PQ T G P+ Y Q G + +
Sbjct: 95 FLPNDAEELFIFLTEITEITIPCRVT-DPQLVV-TL-HEKKGDVALPV-PYDHQRGFSGI 150
Query: 72 ARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV 131
E + +C + + + S+ + + N +V
Sbjct: 151 --------FEDRSYICKTTIGDREVDSDAYYVYR--------LQVSSINVSV--NAVQTV 192
Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNG-------ITISNNASAGRIITNQTLVLQSVTR 184
+ +G +I C + N WT+ +++ L + S
Sbjct: 193 VRQGENITLMCIVIGNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL 251
Query: 185 HSGGLYACSAINSQGE 200
G Y C+ S +
Sbjct: 252 EDSGTYTCNVTESVND 267
Score = 58.9 bits (142), Expect = 5e-10
Identities = 37/296 (12%), Positives = 74/296 (25%), Gaps = 40/296 (13%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
+ +++C+ A W + P + + +SV T + L+ G
Sbjct: 15 SSTFVLTCSGSAP-----VVWERMSQE--PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYF 67
Query: 87 CWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
C + +G + ++ D + L E +I C +
Sbjct: 68 CTHNDSRGLETDERKRLYI-------FVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120
Query: 146 ANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTP 205
L + + R + Y C E S
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDREVDSDA 171
Query: 206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265
+ + L +SI+ V G E + + C V N F W + +
Sbjct: 172 YYV-----YRLQVSSINVSVNAVQTVVRQG----ENITLMCIVIGNEVVN-FEWTYPRKE 221
Query: 266 TAPRPLTSYSIQDGSTSVARY-----TPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
+ R + + + GT C + ++
Sbjct: 222 S-GRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 54.3 bits (130), Expect = 2e-08
Identities = 26/188 (13%), Positives = 53/188 (28%), Gaps = 23/188 (12%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGL 189
VLN C + P ++W + + + L L ++T G
Sbjct: 11 VLNVSSTFVLTC--SGSAP---VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGE 65
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
Y C+ +S+G L I + + + +++ ++ + C V
Sbjct: 66 YFCTHNDSRGLETDERKRLYIF-----VPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120
Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
+PQ P Y Q G + + E + +C
Sbjct: 121 -DPQLVVTLHEKKGDVALP---VPYDHQRGFSGI--------FEDRSYICKTTIGDREVD 168
Query: 310 TPCTFHVV 317
+ +
Sbjct: 169 SDAYYVYR 176
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 58.4 bits (141), Expect = 3e-10
Identities = 38/194 (19%), Positives = 53/194 (27%), Gaps = 30/194 (15%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS----- 78
N V +SC + W F+ T + I + PT
Sbjct: 16 IPENNPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 79 --ELEYGTLLCWARNEQGNQRTPCTFHV-VKAGECEHPVDKPSVQIKLGRNLNASVLNEG 135
+ GT C E GN + V PS S G
Sbjct: 75 VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV--------PPSKPTVN----IPSSATIG 122
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ---------TLVLQSVTRHS 186
C Q P + W +GI + N + R +N LV ++
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182
Query: 187 GGLYACSAINSQGE 200
G Y+C A N G
Sbjct: 183 TGEYSCEARNGYGT 196
Score = 51.9 bits (124), Expect = 4e-08
Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 31/201 (15%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNG----------ITISNNASAGRIITNQTLVLQSVT 183
E + C ++ W + I+ + + +SVT
Sbjct: 18 ENNPVKLSCAYSGFSS-PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76
Query: 184 RHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDE-PVCKQSQQRIYGALRNEQV 242
R G Y C G V LI P G +
Sbjct: 77 REDTGTYTCMVSEEGGNSYGE-------VKVKLIVLVPPSKPTVNIPSSATIG----NRA 125
Query: 243 LVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT------PTSELEYG 295
+++C+ D +P ++Y TW + P ++ + + S + T P S + G
Sbjct: 126 VLTCSEQDGSPPSEY-TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184
Query: 296 TLLCWARNEQGSQRTPCTFHV 316
C ARN G+ T +
Sbjct: 185 EYSCEARNGYGTPMTSNAVRM 205
Score = 32.2 bits (73), Expect = 0.16
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 8/89 (8%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTS----- 290
N V +SC + W F+ DT + I + PT
Sbjct: 16 IPENNPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 291 --ELEYGTLLCWARNEQGSQRTPCTFHVV 317
+ GT C E G+ ++
Sbjct: 75 VTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 58.1 bits (140), Expect = 4e-10
Identities = 25/199 (12%), Positives = 49/199 (24%), Gaps = 29/199 (14%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY--GTL 85
VL+ + W N+ + + + + E+ Y G+L
Sbjct: 15 NNVLLLVHNLPLALGAF-AWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 86 L-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVL 132
L +E + V + + + +K ++
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT---- 129
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYAC 192
+N + W N ++ N L + + R G Y C
Sbjct: 130 ---------LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 193 SAINSQGEGGSTPFDLNIN 211
N S L+I
Sbjct: 181 EISNPVSVRRSNSIKLDII 199
Score = 45.0 bits (106), Expect = 9e-06
Identities = 32/194 (16%), Positives = 50/194 (25%), Gaps = 34/194 (17%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNN----------------ASAGR--IITNQ 175
E ++ H W T + A +GR I +N
Sbjct: 13 EDNNVLLLVHNLPLALGA-FAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG 71
Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
+L+ Q +T G+Y + V + Q
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQAT--------VRFHVHQPVTQPFLQVTNTTV- 122
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
E V+ T +N W FN+ LT + S+ R P + G
Sbjct: 123 ---KELDSVTLTCLSNDIGANIQWLFNSQ---SLQLTERMTLSQNNSILRIDPIKREDAG 176
Query: 296 TLLCWARNEQGSQR 309
C N +R
Sbjct: 177 EYQCEISNPVSVRR 190
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 57.5 bits (139), Expect = 5e-10
Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 28/182 (15%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHS 186
+++G + +C ++ + W +G + N ++ Q L L+SV R
Sbjct: 13 TVSQGQPVKLNCSVEGMEE-PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71
Query: 187 GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC 246
G Y C + S P L + + P + + N +SC
Sbjct: 72 AGRYWCQVEDGGETEISQPVWLTVEGV----------PFFTVEPKDLA-VPPNAPFQLSC 120
Query: 247 TVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCWARNEQ 305
P+ W + + + G T ++ C A N +
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFS-----------CEAHNLK 169
Query: 306 GS 307
G
Sbjct: 170 GL 171
Score = 52.5 bits (126), Expect = 2e-08
Identities = 23/191 (12%), Positives = 52/191 (27%), Gaps = 27/191 (14%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNN----SGTAPRPLTSYSIQDGSTSVARYTPTSE 79
+ + V ++C+V+ + W + + S G S+ +
Sbjct: 14 VSQGQPVKLNCSVEGMEEPD-IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 72
Query: 80 LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
Y C + + + + V+ P ++ ++L
Sbjct: 73 GRY---WCQVEDGGETEISQPVWLTVEG--------VPFFTVEP-KDLAV---PPNAPFQ 117
Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199
C P ++W I VL +++C A N +G
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTGVTQSTMFSCEAHNLKG 170
Query: 200 EGGSTPFDLNI 210
S +++
Sbjct: 171 LASSRTATVHL 181
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 56.7 bits (137), Expect = 8e-10
Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 20/179 (11%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-DGSTSVARYTPTSELEY 82
E +CT P++ + G +Q +G S + +
Sbjct: 14 LSVGESKFFTCTAIGEPESID-WYNPQ--GEKIISTQRVVVQKEGVRSRLTIYNANIEDA 70
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
G C A + +G + + K + + + +G D C
Sbjct: 71 GIYRCQATDAKGQTQEATVVLEIYQ--------KLTFREVV-SPQEFK---QGEDAEVVC 118
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGR--IITNQTLVLQSVTRHSGGLYACSAINSQG 199
+ ++P + W ++ ++ + R ++ N L + ++ + G+Y C
Sbjct: 119 RVSSSPAPA-VSWLYHNEEVTTISD-NRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 175
Score = 56.3 bits (136), Expect = 1e-09
Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 25/193 (12%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRH 185
L+ G +F C P + G I + R++ + L + +
Sbjct: 13 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIST---QRVVVQKEGVRSRLTIYNANIE 68
Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
G+Y C A +++G+ L I L F + Q+ G E V
Sbjct: 69 DAGIYRCQATDAKGQTQEATVVLEIY--QKLTF--REVV---SPQEFKQG----EDAEVV 117
Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNE 304
C V ++P +W ++N + +++ + + + + E Y C R E
Sbjct: 118 CRVSSSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYR---CEGRVE 173
Query: 305 QGSQRTPCTFHVV 317
+ V+
Sbjct: 174 ARGEIDFRDIIVI 186
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 58.2 bits (140), Expect = 9e-10
Identities = 27/190 (14%), Positives = 49/190 (25%), Gaps = 25/190 (13%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS-GGLYAC 192
G D+ C ++ + W + S + + L L +VT C
Sbjct: 172 VGDDVLLRCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTC 230
Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
A N G + V + V + +++ A+ + +VD P
Sbjct: 231 WAENDVGRAEVS---------VQVN-------VSFPASVQLHTAVEMHHWCIPFSVDGQP 274
Query: 253 QAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPT------SELEYGTLLCWARNEQG 306
W FN S + + + + + G A N G
Sbjct: 275 APS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333
Query: 307 SQRTPCTFHV 316
Sbjct: 334 QASASIMAAF 343
Score = 56.3 bits (135), Expect = 4e-09
Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 30/182 (16%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87
+ VL+ C V+ Q W + + S + ++A T S+L + C
Sbjct: 174 DDVLLRCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSLGLTLANVT--SDLNRKNVTC 230
Query: 88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN 147
WA N+ G +V + +
Sbjct: 231 WAENDVGRAEVSVQVNVSFPASVQLHTAVEM-----------------HHWCIPFSVDGQ 273
Query: 148 PPYKKLIWTHNGITISNNA---------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQ 198
P L W NG ++ + +A + + L L T + G Y A N
Sbjct: 274 PA-PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Query: 199 GE 200
G+
Sbjct: 333 GQ 334
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 56.8 bits (137), Expect = 1e-09
Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 36/191 (18%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-----------GRIITNQTLVL 179
G+ C +Q ++ W +G + S I L +
Sbjct: 13 TGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRI 72
Query: 180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
S+ G Y C S P + + F ++EP + + N
Sbjct: 73 TSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE--GLPYF--LEEP---EDRT----VAAN 121
Query: 240 EQVLVSCTVDANPQAQYFTWAFNNS--DTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGT 296
+SC P+ W + TAP S+ G + ++
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFS--------- 172
Query: 297 LLCWARNEQGS 307
C A N +G
Sbjct: 173 --CEAHNAKGV 181
Score = 51.8 bits (124), Expect = 4e-08
Identities = 24/195 (12%), Positives = 47/195 (24%), Gaps = 25/195 (12%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-- 81
R + C + + W + T + G + S+L
Sbjct: 14 GARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRIT 73
Query: 82 ------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG 135
G C +V G P + + +
Sbjct: 74 SLQLSDTGQYQCLVFLGHQ-TFVSQPGYVGLEG-------LPYFLEEP-EDRTVA---AN 121
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI 195
C Q P L+W + + ++ G L + ++C A
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-----QRSLHVPGLNKTSSFSCEAH 176
Query: 196 NSQGEGGSTPFDLNI 210
N++G S + +
Sbjct: 177 NAKGVTTSRTATITV 191
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 53.9 bits (130), Expect = 1e-09
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRH 185
V EG + + C I+ ++ W + N+ + L ++ +T+
Sbjct: 12 VGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS---EKYEITYEDGVAILYVKDITKL 68
Query: 186 SGGLYACSAINSQGE 200
G Y C +N GE
Sbjct: 69 DDGTYRCKVVNDYGE 83
Score = 30.4 bits (69), Expect = 0.22
Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 27/90 (30%)
Query: 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL- 298
V C ++ Q+ TW F R L + +Y T E L
Sbjct: 17 GHVKYVCKIENYDQSTQVTWYFGV-----RQLENSE---------KYEITYEDGVAILYV 62
Query: 299 ------------CWARNEQGSQRTPCTFHV 316
C N+ G + V
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 28.8 bits (65), Expect = 0.77
Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 27/90 (30%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL- 86
V C ++ Q+ TW F R L + +Y T E L
Sbjct: 17 GHVKYVCKIENYDQSTQVTWYFGV-----RQLENSE---------KYEITYEDGVAILYV 62
Query: 87 ------------CWARNEQGNQRTPCTFHV 104
C N+ G + V
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 53.5 bits (129), Expect = 2e-09
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-- 173
P++ L N + G I C NPP +++W + T+ + I+
Sbjct: 10 APTITGNL-ENQTT---SIGESIEVSCTASGNPP-PQIMWFKDNETLVED---SGIVLKD 61
Query: 174 -NQTLVLQSVTRHSGGLYACSAINSQGE 200
N+ L ++ V + GLY C A + G
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGC 89
Score = 31.2 bits (71), Expect = 0.17
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS---YSIQDGSTS--VARYTPTS 290
E + VSCT NP Q W +N L ++DG+ + + R
Sbjct: 22 TSIGESIEVSCTASGNPPPQI-MWFKDN-----ETLVEDSGIVLKDGNRNLTIRRVRKED 75
Query: 291 ELEYGTLLCWARNEQGSQRTPCTFHV 316
E G C A + G + F +
Sbjct: 76 E---GLYTCQACSVLGCAKVEAFFII 98
Score = 29.6 bits (67), Expect = 0.55
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTS--VARYTPTS 78
E + VSCT NP Q W +N L ++DG+ + + R
Sbjct: 22 TSIGESIEVSCTASGNPPPQI-MWFKDN-----ETLVEDSGIVLKDGNRNLTIRRVRKED 75
Query: 79 ELEYGTLLCWARNEQGNQRTPCTFHV 104
E G C A + G + F +
Sbjct: 76 E---GLYTCQACSVLGCAKVEAFFII 98
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 56.9 bits (137), Expect = 3e-09
Identities = 28/200 (14%), Positives = 50/200 (25%), Gaps = 16/200 (8%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
V G + C P +W +G + + ++ Q L + + + G Y
Sbjct: 19 VFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSER--VLVGPQRLQVLNASHEDSGAY 76
Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQS-------------QQRIYGAL 237
+C +Q + + DE +++
Sbjct: 77 SCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136
Query: 238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 297
V C NP +W N + + G
Sbjct: 137 AANTVRFRCPAAGNPTPSI-SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY 195
Query: 298 LCWARNEQGSQRTPCTFHVV 317
C N+ GS R T V+
Sbjct: 196 TCVVENKFGSIRQTYTLDVL 215
Score = 55.8 bits (134), Expect = 7e-09
Identities = 41/191 (21%), Positives = 60/191 (31%), Gaps = 31/191 (16%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 84
V C NP +W N G Q S + P+ G
Sbjct: 139 NTVRFRCPAAGNPTPSI-SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR---GN 194
Query: 85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
C N+ G+ R T V+ E +P +Q L N A G D+ F C +
Sbjct: 195 YTCVVENKFGSIRQTYTLDVL-----ERSPHRPILQAGLPANQTAV---LGSDVEFHCKV 246
Query: 145 QANPPYKKLIWTH----NGITISNNASAGRIIT-----------NQTLVLQSVTRHSGGL 189
++ + W NG + + + + + L L +VT G
Sbjct: 247 YSDAQ-PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305
Query: 190 YACSAINSQGE 200
Y C A NS G
Sbjct: 306 YTCLAGNSIGF 316
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 55.4 bits (133), Expect = 3e-09
Identities = 36/212 (16%), Positives = 58/212 (27%), Gaps = 37/212 (17%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS----- 78
NE + ++CT + W F T + I ++ +
Sbjct: 13 VPENESIKLTCTYSGFSSPR-VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71
Query: 79 --ELEYGTLLCWARNEQGNQRTPCTFHV-VKAGECEHPVDKPSVQIKLGRNLNASVLNEG 135
+ G C E G + H+ V PS S + G
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV--------PPSKPTI----SVPSSVTIG 119
Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISN----------NASAGRIITNQTLVLQSVTRH 185
C P + W +GI++ N+S + L+ VT
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 186 SGGLYACSAINSQGEGGSTP------FDLNIN 211
G Y C A N G + +LN+
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211
Score = 50.7 bits (121), Expect = 1e-07
Identities = 32/220 (14%), Positives = 59/220 (26%), Gaps = 36/220 (16%)
Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR----- 170
K SV + V E I C ++ W + +
Sbjct: 1 KGSVYT---AQSDVQVP-ENESIKLTCTYSGFSS-PRVEWKFVQGSTTALVCYNSQITAP 55
Query: 171 -----IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDE-P 224
++ + SVTR G Y C G+ ++L P
Sbjct: 56 YADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGE-------VSIHLTVLVPPSKP 108
Query: 225 VCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSV 283
G + +++C+ D +P ++Y +W + S+
Sbjct: 109 TISVPSSVTIG----NRAVLTCSEHDGSPPSEY-SWFKDGISMLTADAKKTRAFMNSSFT 163
Query: 284 ARY-------TPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
P + + G C A+N G+ H+
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 52.4 bits (126), Expect = 4e-09
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGL 189
+++ G + C ++ + + W +G+ ++ + R IT + + +Q GL
Sbjct: 14 LVHPGDLLQLRCRLRDDVQ--SINWLRDGVQLAES---NRTRITGEEVEVQDSVPADSGL 68
Query: 190 YACSAINSQGEGGSTPFDLNI 210
YAC + G +T F +N+
Sbjct: 69 YACVTSSPSGS-DTTYFSVNV 88
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 54.5 bits (131), Expect = 4e-09
Identities = 26/195 (13%), Positives = 53/195 (27%), Gaps = 29/195 (14%)
Query: 131 VLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
+ + + + C++ ++ WT NG+ ++ + +N + G
Sbjct: 14 IRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---RKNASNMEYRINKPRAEDSGE 70
Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFN---SIDEPVCKQSQQRIYGALRNEQVLVSC 246
Y C + + I K+S+ + G + ++ C
Sbjct: 71 YHCVY-HFVSA---------PKANATIEVKAAPDITGH--KRSENKNEG----QDAMMYC 114
Query: 247 TVDANPQAQYFTWAFNNSDTAPRPLTSYS----IQDGSTSVARYTPTSELE-YGTLLCWA 301
P + + W + S I + + E G C A
Sbjct: 115 KSVGYPHPE-WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA 173
Query: 302 RNEQGSQRTPCTFHV 316
N GS V
Sbjct: 174 TNSIGSASVSTVLRV 188
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 54.9 bits (132), Expect = 5e-09
Identities = 21/199 (10%), Positives = 46/199 (23%), Gaps = 43/199 (21%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL- 86
E + + V + W+ N + R E L
Sbjct: 18 EGIQLYSFVTYYVEDLKVNWSHNG-----SAIRYSD---------RVKTGVTGEQIWLQI 63
Query: 87 ------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRN-------- 126
+ + + E + +N
Sbjct: 64 NEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL 123
Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQS 181
+ + EG + C++ +PP ++ W N ++ + + + +
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPP-PEVSWLKNEKALAQ--TDHCNLKFEAGRTAYFTING 180
Query: 182 VTRHSGGLYACSAINSQGE 200
V+ G Y N G
Sbjct: 181 VSTADSGKYGLVVKNKYGS 199
Score = 53.7 bits (129), Expect = 1e-08
Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 18/201 (8%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRH 185
+ + I + K+ W+HNG I + R+ T L + T +
Sbjct: 13 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS---DRVKTGVTGEQIWLQINEPTPN 69
Query: 186 SGGLYACSAINSQGEGGST---------PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
G Y + + T ++ + +
Sbjct: 70 DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTI 129
Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
+ + ++C V +P + +W N A + + G T+ S + G
Sbjct: 130 QEGKALNLTCNVWGDPPPE-VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGK 188
Query: 297 LLCWARNEQGSQRTPCTFHVV 317
+N+ GS+ + T V
Sbjct: 189 YGLVVKNKYGSETSDFTVSVF 209
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 54.9 bits (132), Expect = 6e-09
Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 24/198 (12%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVARYTPTSELE 81
+NE ++C V+ P+ W + T + +DG+ R + +
Sbjct: 21 VKKNEPATLNCKVEGKPEPTI-EWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 82 Y-GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
G C A+N G + + V + +++ + V +G
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIA-------VLRDDFRVEP---KDTRVA-KGETALL 128
Query: 141 DCH-IQANPPYKKLIWTHNGITISNNASAG-------RIITNQTLVLQSVTRHSGGLYAC 192
+C + P LIW +G+ + + + RI+ L++ +V G Y C
Sbjct: 129 ECGPPKGIPEPT-LIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
Query: 193 SAINSQGEGGSTPFDLNI 210
A N G S+ L +
Sbjct: 188 IAQNLVGTRESSYAKLIV 205
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 52.4 bits (126), Expect = 6e-09
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
EG+ + F C + NP P K+ W +G IS + I + +L + T G
Sbjct: 22 EGMPVTFTCRVAGNPKP--KIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDG 79
Query: 189 LYACSAINSQGE 200
Y A N QG
Sbjct: 80 NYTIMAANPQGR 91
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 51.2 bits (123), Expect = 9e-09
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
L G + C +P W N + +++ T + ++ V G Y
Sbjct: 14 KLMPGSTLVLQCVAVGSPI-PHYQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTY 65
Query: 191 ACSAINSQGEGGSTPFDLNINKMVNL 216
C N + S ++ I+++ NL
Sbjct: 66 WCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 28.1 bits (63), Expect = 1.2
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 17/84 (20%)
Query: 228 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVA-RY 286
SQ+ + G +++ C +P Y W N Y + Y
Sbjct: 11 TSQKLMPG----STLVLQCVAVGSPIPHY-QWFKNELPLTHETKKLYMVPYVDLEHQGTY 65
Query: 287 TPTSELEYGTLLCWARNEQGSQRT 310
C N++ SQ +
Sbjct: 66 W-----------CHVYNDRDSQDS 78
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 51.3 bits (123), Expect = 1e-08
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGL 189
+++ G + C ++ + + W +G+ + + R IT + + ++ GL
Sbjct: 20 LVHPGDLLQLRCRLRDDVQ--SINWLRDGVQLVES---NRTRITGEEVEVRDSIPADSGL 74
Query: 190 YACSAINSQGEGGSTPFDLNI 210
YAC + G +T F +N+
Sbjct: 75 YACVTSSPSGS-DTTYFSVNV 94
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 51.6 bits (124), Expect = 1e-08
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 128 NASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSV 182
+ VL EG + +C I A P P KL W N + N + + TL+++ V
Sbjct: 24 SKKVL-EGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV 80
Query: 183 TRHSGGLYACSAINSQGE 200
+ G Y SA+N G
Sbjct: 81 NKKDAGWYTVSAVNEAGV 98
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 53.3 bits (128), Expect = 2e-08
Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 27/197 (13%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYSI-QDGSTSVARYTPTSE 79
+ E ++C + P W P + + GS R +
Sbjct: 21 VSKGEPATLNCKAEGRPTPTI-EWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 80 LEY--GTLLCWARNEQGNQRTPCTFHVVKAGE---CEHPVDKPSVQIKLGRNLNASVLNE 134
G +C ARN G + V ++P D ++
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV--------------MVAV 125
Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLYACS 193
G +C P + W +G + + RI L++ + G Y C
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKD--ERITIRGGKLMITYTRKSDAGKYVCV 183
Query: 194 AINSQGEGGSTPFDLNI 210
N GE S +L +
Sbjct: 184 GTNMVGERESEVAELTV 200
Score = 49.0 bits (117), Expect = 5e-07
Identities = 29/194 (14%), Positives = 62/194 (31%), Gaps = 34/194 (17%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR----IITNQTLVLQSVTRHS 186
++++G +C + P + W G + + R ++ + +L +
Sbjct: 20 IVSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 187 G-----GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ 241
G+Y C A N GE S L + + +Q+ + E
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAIL---------RDDFRQNPSDVM-VAVGEP 128
Query: 242 VLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTS----YSIQDGSTSVARYTPTSELEYGT 296
++ C +P+ +W + PL +I+ G + + G
Sbjct: 129 AVMECQPPRGHPEPTI-SWKKDG-----SPLDDKDERITIRGGKLMITYTRKSDA---GK 179
Query: 297 LLCWARNEQGSQRT 310
+C N G + +
Sbjct: 180 YVCVGTNMVGERES 193
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
+ C +P ++W +G+ +S S + + N L ++ G Y
Sbjct: 19 TVAVDGTFVLSCVATGSPVPT-ILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRY 77
Query: 191 ACSAINSQGE 200
C A GE
Sbjct: 78 TCIASTPSGE 87
Score = 30.1 bits (68), Expect = 0.42
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
+ ++SC +P W + + + +++G + G
Sbjct: 20 VAVDGTFVLSCVATGSPVPTI-LWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDT---G 75
Query: 296 TLLCWARNEQGSQRTPCTFHV 316
C A G V
Sbjct: 76 RYTCIASTPSGEATWSAYIEV 96
Score = 28.2 bits (63), Expect = 1.6
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
+ ++SC +P W + + + +++G + G
Sbjct: 20 VAVDGTFVLSCVATGSPVPTI-LWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDT---G 75
Query: 84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQ 120
C A G V + G PV P
Sbjct: 76 RYTCIASTPSGEATWSAYIEVQEFG---VPVQPPRPT 109
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 50.4 bits (121), Expect = 2e-08
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ---TLVLQSVTRHSGGL 189
EG D+ +Q P P + W N + + L + + R G
Sbjct: 19 EGQDVIMSIRVQGEPKP--VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF 76
Query: 190 YACSAINSQGE 200
Y C A+N G
Sbjct: 77 YTCKAVNEYGA 87
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 50.0 bits (120), Expect = 3e-08
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
+G D +F + P P + W NG+ I + + LV++ VT
Sbjct: 19 QGSDAHFRVRVVGKPDP--ECEWYKNGVKIERS-DRIYWYWPEDNVCELVIRDVTGEDSA 75
Query: 189 LYACSAINSQGE 200
AIN GE
Sbjct: 76 SIMVKAINIAGE 87
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 52.3 bits (125), Expect = 4e-08
Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 29/173 (16%)
Query: 138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS 197
++ D I P++ H R LV+ + G Y C
Sbjct: 43 MHHDV-IFIEWPFRGFFDIH------------RSANTFFLVVTAANISHDGNYLCRMKLG 89
Query: 198 QGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
+ E + L++ K + L +S + V+CTV+A P
Sbjct: 90 ETE-VTKQEHLSVVKPLTLSVHSERSQF-----------PDFSVLTVTCTVNAFPHPHV- 136
Query: 258 TWAFNNSDTAPRPLTSYSIQ---DGSTSVARYTPTSELEYGTLLCWARNEQGS 307
W + + DGS SVA + + + C +N++
Sbjct: 137 QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEE 189
Score = 40.4 bits (94), Expect = 3e-04
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 23/181 (12%)
Query: 29 QVLVSCTVDANPQAQYFTWAFNNSGTA---PRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
++ VS + Q ++ P + +T T + G
Sbjct: 23 EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNY 82
Query: 86 LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
LC + + VVK ++ + S + + C +
Sbjct: 83 LCRMKLGETEVTKQEHLSVVK---------PLTLSVHS----ERSQFPDFSVLTVTCTVN 129
Query: 146 ANPPYKKLIWTH-NGITISNNASAGRII-----TNQTLVLQSVTRHSGGLYACSAINSQG 199
A P + W G+ + A+ G ++ + V S+ + C N +
Sbjct: 130 AFPH-PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Query: 200 E 200
E
Sbjct: 189 E 189
Score = 36.2 bits (83), Expect = 0.008
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS----IQDGSTSVARYTPTSE 79
+ V+CTV+A P W G P P + +DGS SVA +
Sbjct: 116 FPDFSVLTVTCTVNAFPHPHV-QWLMPE-GVEPAPTAANGGVMKEKDGSLSVAVDLSLPK 173
Query: 80 LEYGTLLCWARNEQG 94
+ + C +N++
Sbjct: 174 PWHLPVTCVGKNDKE 188
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 49.6 bits (119), Expect = 5e-08
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRI-ITNQ----TLVLQSVTRHSG 187
G + F ++Q+ P ++ W HNG+ + + +I TN TL +
Sbjct: 22 CGQNTRFILNVQSKPTA--EVKWYHNGVELQES---SKIHYTNTSGVLTLEILDCHTDDS 76
Query: 188 GLYACSAINSQGE 200
G Y N +GE
Sbjct: 77 GTYRAVCTNYKGE 89
Score = 30.0 bits (68), Expect = 0.39
Identities = 14/91 (15%), Positives = 20/91 (21%), Gaps = 28/91 (30%)
Query: 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 298
+ V + P A+ W N L S + T+ TL
Sbjct: 23 GQNTRFILNVQSKPTAE-VKWYHNG-----VELQESS---------KIHYTNTSGVLTLE 67
Query: 299 -------------CWARNEQGSQRTPCTFHV 316
N +G T V
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 28.4 bits (64), Expect = 1.3
Identities = 14/91 (15%), Positives = 20/91 (21%), Gaps = 28/91 (30%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
+ V + P A+ W N L S + T+ TL
Sbjct: 23 GQNTRFILNVQSKPTAE-VKWYHNG-----VELQESS---------KIHYTNTSGVLTLE 67
Query: 87 -------------CWARNEQGNQRTPCTFHV 104
N +G T V
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 50.3 bits (120), Expect = 5e-08
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ--------TLVLQSVTR 184
G C I++ PP ++ W+ + + S + TL + ++ R
Sbjct: 26 LHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR 85
Query: 185 -HSGGLYACSAINSQGE 200
+Y C+A NS G
Sbjct: 86 ADFQTIYNCTAWNSFGS 102
Score = 43.0 bits (101), Expect = 1e-05
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 229 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQ-----DGSTSV 283
S + AL E+ + C + + P W++ + Y+++ +G S
Sbjct: 18 SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77
Query: 284 ARYTPTSELEYGTL-LCWARNEQGSQRTPCTFHV 316
+ ++ T+ C A N GS
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 41.4 bits (97), Expect = 6e-05
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-----DGSTSV 71
S + AL E+ + C + + P W++ + Y+++ +G S
Sbjct: 18 SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77
Query: 72 ARYTPTSELEYGTL-LCWARNEQGNQRTPCTFHV 104
+ ++ T+ C A N G+
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 53.3 bits (127), Expect = 5e-08
Identities = 38/331 (11%), Positives = 85/331 (25%), Gaps = 85/331 (25%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE------ 81
+ V ++CT Q F W +N S+ + S R L
Sbjct: 10 DTVELTCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 82 ----------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV 131
T +C + + E + V + + +
Sbjct: 69 LIIKNLKIEDSDTYICEVED--------------QKEEVQLLVFGLTAN-------SDTH 107
Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYA 191
L +G + + +TL + + G +
Sbjct: 108 LLQGQSLTLTLESPPGSS-PSVQCRSPRGKNIQG--------GKTLSVSQLELQDSGTWT 158
Query: 192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN 251
C+ + +Q + + ++++ + + I EQV S +
Sbjct: 159 CTVLQNQKK---------VEFKIDIVVLAFQKA------SSIVYKKEGEQVEFSFPLAFT 203
Query: 252 PQAQYFT---WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE--------------- 293
+ + W ++ + ++ +++ SV R T +L+
Sbjct: 204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263
Query: 294 -----YGTLLCWARNEQGSQRTPCTFHVVKA 319
G L + G V++A
Sbjct: 264 PQYAGSGNLTLALEAKTGKLHQEVNLVVMRA 294
Score = 39.4 bits (91), Expect = 0.001
Identities = 20/193 (10%), Positives = 42/193 (21%), Gaps = 52/193 (26%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-------------------N 174
+G + C + W ++ + N
Sbjct: 8 KGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIY 234
L+++++ Y C + + E F L N +L
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL------------------ 108
Query: 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEY 294
L+ + + ++ P + SV++
Sbjct: 109 --LQGQSLTLTLESPPGSSPSV-QC--------RSPRGKNIQGGKTLSVSQLELQDS--- 154
Query: 295 GTLLCWARNEQGS 307
GT C Q
Sbjct: 155 GTWTCTVLQNQKK 167
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 49.2 bits (118), Expect = 5e-08
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
EG D + P P + W NG T+ ++ ++I ++ +L+ + V G
Sbjct: 19 EGRFCRMDFKVSGLPAP--DVSWYLNGRTVQSDDLH-KMIVSEKGLHSLIFEVVRASDAG 75
Query: 189 LYACSAINSQGE 200
YAC A N GE
Sbjct: 76 AYACVAKNRAGE 87
Score = 26.1 bits (58), Expect = 7.6
Identities = 11/82 (13%), Positives = 19/82 (23%), Gaps = 1/82 (1%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
+ V P +W N L + + + + G
Sbjct: 17 IDEGRFCRMDFKVSGLPAPDV-SWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAG 75
Query: 296 TLLCWARNEQGSQRTPCTFHVV 317
C A+N G V+
Sbjct: 76 AYACVAKNRAGEATFTVQLDVL 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 6e-08
Identities = 68/407 (16%), Positives = 111/407 (27%), Gaps = 134/407 (32%)
Query: 52 SGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECE 111
+ RPLT + GS PT+ + L EQ N+ P + E
Sbjct: 2 DAYSTRPLT---LSHGSLEHVLLVPTASFFIASQL----QEQFNKILP------EPTEGF 48
Query: 112 HPVDKPSVQIKL-GRNLN------------------ASVLNE-------GVDIY-----F 140
D+P+ +L G+ L L E G DI+
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 141 DCHIQANPPYKKLIWTHNGITISN----NASAGRIITN--QTLVLQSVTRHSGGLYACSA 194
K + I N A R + + ++V + L A
Sbjct: 109 LQENDTTLVKTKEL-------IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-- 159
Query: 195 INSQGEGGSTPFDLNINKMVNL--IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
QG F+ ++ +L ++ + + K S + + L+ T+DA
Sbjct: 160 FGGQGN-TDDYFE----ELRDLYQTYHVLVGDLIKFSAETL-------SELIRTTLDAEK 207
Query: 253 QAQYFTWAFN------NSDTAPRP--LTS--YS---IQDGSTSVARY---------TPTS 290
FT N N P L S S I G +A Y TP
Sbjct: 208 ---VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGE 262
Query: 291 ELEY--GTLLC---------------WAR-NEQGSQRTPCTFHVVKAGECEHPV-AVSHR 331
Y G W + F + +P ++
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 332 YVAKLYATNAKGAGPMV-------------LMKTNTEVTSLMNKHIQ 365
+ N PM+ + KTN+ + + K ++
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA--GKQVE 367
Score = 39.6 bits (92), Expect = 0.002
Identities = 57/319 (17%), Positives = 99/319 (31%), Gaps = 104/319 (32%)
Query: 13 VCKQS-------QQRIYGALRNEQVLVSCTVDANPQAQYFTWA--FNNS----------G 53
K + + GA + Q LV+ A + +W F + G
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA--ETD--SWESFFVSVRKAITVLFFIG 307
Query: 54 -----TAPRPLTSYSIQDGSTSVARYTPT-----SELEYGTLLCWARNEQGNQRTPCTFH 103
P SI + S P+ S L + + + N P
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQ 365
Query: 104 V-----------VKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-- 150
V V +G P + + L R A G+D Q+ P+
Sbjct: 366 VEISLVNGAKNLVVSG---PPQSLYGLNLTL-RKAKAP---SGLD-------QSRIPFSE 411
Query: 151 KKLIWTHNGITISN------NASAGRIITNQTLVLQSVTRHSGGL----YA-CSAINSQG 199
+KL +++ + +++ A +I N+ LV +V+ ++ + Y + +
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLI-NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 200 EGGSTPFDLNINKMVNLIFNSIDEPV-----CKQSQQRI----------YGAL--RNEQ- 241
GS + V+ I PV + I G L RN+
Sbjct: 471 LSGSISERI-----VDCIIR---LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 242 ----VLVSCTVDANPQAQY 256
V+V+ T+D NP Y
Sbjct: 523 TGVRVIVAGTLDINPDDDY 541
Score = 36.2 bits (83), Expect = 0.020
Identities = 69/437 (15%), Positives = 119/437 (27%), Gaps = 177/437 (40%)
Query: 22 YGALRNEQVLVSCTVDANPQAQYFT----WA-FNNSGTAPRPLTSYSIQDGSTS----VA 72
+G+L V P A +F F + P P ++ D T+ V
Sbjct: 13 HGSLE-----HVLLV---PTASFFIASQLQEQF--NKILPEPTEGFAADDEPTTPAELVG 62
Query: 73 RY--------TPTSELEYGTLLCWARNE------QGNQRTPCTFHVVKA---GECEHPVD 115
++ P+ ++ +L E +GN H + A E + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-----IHALAAKLLQENDTTLV 117
Query: 116 KPSVQIK--------LGRNLN---ASVLNEGV-----------------DIYFD------ 141
K IK R + S L V D YF+
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 142 -----------------------CHIQANPPYKK----LIWTHNGITISNN---ASAGR- 170
+ A + + L W N + S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 171 ------------IITNQTL---------VLQSVTRHSGGLYACSAINSQGEGGSTPFDLN 209
++T + L L+ T HS GL AI S F ++
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES--FFVS 295
Query: 210 INKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR 269
+ K + ++F I + + Y ++ +++ N++ P
Sbjct: 296 VRKAITVLF-FIG----VRCYEA-YPNTSLPPSILEDSLE-------------NNEGVPS 336
Query: 270 P------LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECE 323
P LT +QD + P + +L+ A+N VV +G
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-----------LVV-SG--- 381
Query: 324 HPVAVSHRYVAKLYATN 340
P + LY N
Sbjct: 382 PPQS--------LYGLN 390
Score = 34.6 bits (79), Expect = 0.054
Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 72/191 (37%)
Query: 135 GVDIYFDCHIQANPPYKKLIW----TH----NGITISNNASAGRIITNQTLVLQSVTRHS 186
G+D+Y + +W H G +I + I+ N ++T H
Sbjct: 1632 GMDLY------KTSKAAQDVWNRADNHFKDTYGFSILD------IVINNP---VNLTIHF 1676
Query: 187 GG--------LYA--CSAINSQGEGGSTPFDLNIN-KMVNLIFNSIDEPVCKQSQ--QRI 233
GG Y+ G+ + IN + F S ++ + +Q Q
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-EKGLLSATQFTQP- 1734
Query: 234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVA--RYTPTSE 291
AL L+ A + L S + + A S
Sbjct: 1735 --AL----TLMEK-------AAF------------EDLKSKGLIPADATFAGH-----S- 1763
Query: 292 L-EYGTLLCWA 301
L EY L A
Sbjct: 1764 LGEYAALASLA 1774
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 51.0 bits (122), Expect = 7e-08
Identities = 25/189 (13%), Positives = 53/189 (28%), Gaps = 42/189 (22%)
Query: 135 GVDIYFDCH-IQANPPYKKLIWTH-----------NGITISNNASAGRIITNQTLVLQSV 182
G DI D Q + + W ++ N TL ++ +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 183 TRHSGGLYACSAINSQGEGGSTP-FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ 241
+Y S +++G+ FDL I + V +P +
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-------SKPKISWT---------CIN 117
Query: 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
++C V + + + L ++T + ++ C A
Sbjct: 118 TTLTCEVMNGTDPEL-NLYQDG-----KHLKL----SQRVITHKWTTSLSAKF---KCTA 164
Query: 302 RNEQGSQRT 310
N+ + +
Sbjct: 165 GNKVSKESS 173
Score = 41.4 bits (97), Expect = 1e-04
Identities = 18/194 (9%), Positives = 45/194 (23%), Gaps = 38/194 (19%)
Query: 17 SQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT 75
+ +GAL + + + + W + +
Sbjct: 5 NALETWGAL-GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF 63
Query: 76 PTSELE--------YGTLLCWARNEQGNQRTPCTFHV-VKAGECEHPVDKPSVQIKLGRN 126
L+ + +G F + ++ V KP +
Sbjct: 64 KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE-----RVSKPKISW----- 113
Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS 186
++ C + +L +G + +Q ++ T
Sbjct: 114 -------TCINTTLTCEVMNGTDP-ELNLYQDGKHLK---------LSQRVITHKWTTSL 156
Query: 187 GGLYACSAINSQGE 200
+ C+A N +
Sbjct: 157 SAKFKCTAGNKVSK 170
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 49.3 bits (118), Expect = 7e-08
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ--TLVLQSVTRHSGGLY 190
EG F C P P + W G +S +A T T + SV G Y
Sbjct: 28 EGESARFSCDTDGEPVP--TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 85
Query: 191 ACSAINSQGEGGSTPFDLNINK 212
+ NS+G+ F L I K
Sbjct: 86 SVVVENSEGK-QEAEFTLTIQK 106
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 51.0 bits (121), Expect = 1e-07
Identities = 25/209 (11%), Positives = 58/209 (27%), Gaps = 31/209 (14%)
Query: 119 VQIKLGRNL-NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTL 177
+Q G +L E + C + K + W +G I +
Sbjct: 1 MQSIKGNHLVKVYDYQEDGSVLLTC----DAEAKNITWFKDGKMIGFLTE-----DKKKW 51
Query: 178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSID--------------- 222
L S + G+Y C ++ + + + D
Sbjct: 52 NLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGN 111
Query: 223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD-TAPRPLTSYSIQDGST 281
E + +Q ++ V+++C + W N+ + + +
Sbjct: 112 EEMGGITQTPYKVSISGTTVILTCPQYPGSE---ILWQHNDKNIGGDEDDKNIGSDEDHL 168
Query: 282 SVARYTPTSELEYGTLLCWARNEQGSQRT 310
S+ ++ + G +C+ R +
Sbjct: 169 SLKEFSELEQS--GYYVCYPRGSKPEDAN 195
Score = 41.4 bits (96), Expect = 1e-04
Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 15/191 (7%)
Query: 27 NEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVA-RYT-PTSELEY 82
+ VL++C +A TW + G +++ + Y S+ +
Sbjct: 18 DGSVLLTCDAEAKN----ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS 73
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNAS--VLNEGVDIYF 140
L + R + A + + D ++G V G +
Sbjct: 74 KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVIL 133
Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-TLVLQSVTRHS-GGLYACSAINSQ 198
C P + ++W HN I + I +++ L L+ + G Y C S+
Sbjct: 134 TC--PQYPGSE-ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190
Query: 199 GEGGSTPFDLN 209
E + L
Sbjct: 191 PEDANFYLYLR 201
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 48.5 bits (116), Expect = 1e-07
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 131 VLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHS 186
+ EG D C ++ P P ++ W NG I R L +Q
Sbjct: 22 AVIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQY----ARSTCEAGVAELHIQDALPED 75
Query: 187 GGLYACSAINSQGE 200
G Y C A N+ G+
Sbjct: 76 HGTYTCLAENALGQ 89
Score = 26.1 bits (58), Expect = 8.5
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 9/83 (10%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTS--VARYTPTSELE 293
+ + ++ C+V P + TW N P + + G + P
Sbjct: 23 VIEGQDFVLQCSVRGTPVPRI-TWLLNGQ---PIQYARSTCEAGVAELHIQDALPEDH-- 76
Query: 294 YGTLLCWARNEQGSQRTPCTFHV 316
GT C A N G V
Sbjct: 77 -GTYTCLAENALGQVSCSAWVTV 98
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 47.7 bits (114), Expect = 2e-07
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 15/91 (16%)
Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRII-- 172
KP + + G + P P WT + ++
Sbjct: 2 KPKILTAS----RKIKIKAGFTHNLEVDFIGAPDP--TATWTVGDSGAALA---PELLVD 52
Query: 173 ---TNQTLVLQSVTRHSGGLYACSAINSQGE 200
+ ++ S R G Y N GE
Sbjct: 53 AKSSTTSIFFPSAKRADSGNYKLKVKNELGE 83
Score = 25.7 bits (57), Expect = 9.5
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE-YGTLL 298
+ P TW +S A P + +TS+ + P+++ G
Sbjct: 18 FTHNLEVDFIGAPDPTA-TWTVGDSGAALAPELLVDAKSSTTSI--FFPSAKRADSGNYK 74
Query: 299 CWARNEQGSQRTPCTFHV 316
+NE G V
Sbjct: 75 LKVKNELGEDEAIFEVIV 92
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 49.1 bits (117), Expect = 2e-07
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 13/122 (10%)
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
G+ N + V E P KP + ++ EG FDC
Sbjct: 11 GSSPTSPINANKVENEDAFLEEVAE---EKPHVKPYFTKTI-LDMEVV---EGSAARFDC 63
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGLYACSAINSQ 198
++ P + ++W + + + +I ++ +L + V Y C A+NS
Sbjct: 64 KVEGYPDPE-VMWFKDDNPVKESRHF-QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121
Query: 199 GE 200
GE
Sbjct: 122 GE 123
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 47.8 bits (114), Expect = 2e-07
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSG 187
+ + F C NP + W NG G + +L+++SV
Sbjct: 19 AVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 77
Query: 188 GLYACSAINSQGE 200
G Y C N G
Sbjct: 78 GNYTCVVENEYGS 90
Score = 26.3 bits (58), Expect = 6.7
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 228 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-LTSYSIQDGSTS--VA 284
+ ++R++ V C NP W N + + Y +++ S +
Sbjct: 12 KMEKRLHAVPAANTVKFRCPAGGNPMPTM-RWLKNGKEFKQEHRIGGYKVRNQHWSLIME 70
Query: 285 RYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
P+ + Y C NE GS VV
Sbjct: 71 SVVPSDKGNYT---CVVENEYGSINHTYHLDVV 100
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 47.4 bits (113), Expect = 3e-07
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNN-------ASAGRIITNQTLVLQSVTRH 185
++ NP P L W +NG ++ + + L L + T
Sbjct: 15 SDHHWCIPFTVKGNPKP--ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72
Query: 186 SGGLYACSAINSQGE 200
+ G Y A N G+
Sbjct: 73 NNGDYTLIAKNEYGK 87
Score = 32.8 bits (75), Expect = 0.036
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 231 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT--- 287
+ + + TV NP+ W +N + I + +
Sbjct: 8 TFLESPTSDHHWCIPFTVKGNPKPA-LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQL 66
Query: 288 -PTSELEYGTLLCWARNEQGSQRTPCTFHVVKA 319
+ + G A+NE G + H +
Sbjct: 67 DNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
Score = 30.1 bits (68), Expect = 0.35
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT--- 75
+ + + TV NP+ W +N + I + +
Sbjct: 8 TFLESPTSDHHWCIPFTVKGNPKPA-LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQL 66
Query: 76 -PTSELEYGTLLCWARNEQGNQRTPCTFHVVKA 107
+ + G A+NE G + H +
Sbjct: 67 DNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 47.0 bits (112), Expect = 5e-07
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGL 189
EG DC + P P L W +G + +++ ++ +L+++ VT G+
Sbjct: 23 EGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI 80
Query: 190 YACSAINSQGE 200
Y C A N G+
Sbjct: 81 YTCIATNRAGQ 91
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 46.5 bits (111), Expect = 5e-07
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSG 187
EG + C P P ++ W+ G I + GR TL++ V + G
Sbjct: 19 EGKVLTVACAFTGEPTP--EVTWSCGGRKIHSQEQ-GRFHIENTDDLTTLIIMDVQKQDG 75
Query: 188 GLYACSAINSQGE 200
GLY S N G
Sbjct: 76 GLYTLSLGNEFGS 88
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 46.5 bits (111), Expect = 6e-07
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSG 187
F P P IWT +G I+ G+ ++ L +
Sbjct: 20 SDSVAKFAVKATGEPRP--TAIWTKDGKAITQG---GKYKLSEDKGGFFLEIHKTDTSDS 74
Query: 188 GLYACSAINSQGE 200
GLY C+ NS G
Sbjct: 75 GLYTCTVKNSAGS 87
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 46.2 bits (110), Expect = 7e-07
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
+ G + C + A P ++ W +G+ + + L+L + G Y
Sbjct: 21 AVAPGGTVTLTCEVPAQPS-PQIHWMKDGVPLPLP-------PSPVLILPEIGPQDQGTY 72
Query: 191 ACSAINSQGE 200
+C A +S
Sbjct: 73 SCVATHSSHG 82
Score = 28.9 bits (65), Expect = 0.66
Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 13/83 (15%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTS-VARYTPTSELEY 294
V ++C V A P Q W + P + + Y+
Sbjct: 22 VAPGGTVTLTCEVPAQPSPQI-HWMKDGVPLPLPPSPVLILPEIGPQDQGTYS------- 73
Query: 295 GTLLCWARNEQGSQRTPCTFHVV 317
C A + + +
Sbjct: 74 ----CVATHSSHGPQESRAVSIS 92
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 46.2 bits (110), Expect = 7e-07
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
L C +P + W G T I TL ++++ G Y
Sbjct: 19 TLAVDGTALLKCKATGDPL-PVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTY 77
Query: 191 ACSAINSQGE 200
C A +S GE
Sbjct: 78 TCVATSSSGE 87
Score = 27.4 bits (61), Expect = 3.0
Identities = 15/98 (15%), Positives = 22/98 (22%), Gaps = 30/98 (30%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
+ L+ C +P +W R T E G
Sbjct: 20 LAVDGTALLKCKATGDPLPVI-SWLKEG-----FTFPGRD--------PRAT---IQEQG 62
Query: 296 TLL-------------CWARNEQGSQRTPCTFHVVKAG 320
TL C A + G V ++G
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100
Score = 27.0 bits (60), Expect = 4.2
Identities = 15/98 (15%), Positives = 22/98 (22%), Gaps = 30/98 (30%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
+ L+ C +P +W R T E G
Sbjct: 20 LAVDGTALLKCKATGDPLPVI-SWLKEG-----FTFPGRD--------PRAT---IQEQG 62
Query: 84 TLL-------------CWARNEQGNQRTPCTFHVVKAG 108
TL C A + G V ++G
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 48.5 bits (115), Expect = 8e-07
Identities = 24/203 (11%), Positives = 48/203 (23%), Gaps = 39/203 (19%)
Query: 24 ALRNEQVLVSCTVDANPQAQY---FTWAFNNSGTAPRPLTSYSIQDGSTS---------- 70
+ E + C +P+ Q W + S
Sbjct: 12 KAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGR 71
Query: 71 VARYTPTSELEYGTLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKP 117
V + + ++ C + G V+ KP
Sbjct: 72 VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL---------VKP 122
Query: 118 SVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTL 177
S R G D C + + W + + +T+ +
Sbjct: 123 SGT----RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178
Query: 178 VLQSVTRHSGGLYACSAINSQGE 200
+++ + G Y+C+ N G
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGS 201
Score = 39.7 bits (92), Expect = 7e-04
Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 21/145 (14%)
Query: 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSI-DEPVCKQSQQR 232
+ ++ + ++ G Y C + G L C
Sbjct: 83 DASINVTNLQLSDIGTYQCKVKKAPGVANKK---------FLLTVLVKPSGTRCFVDGSE 133
Query: 233 IYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSE 291
G + C + Q+ W + + SV +
Sbjct: 134 EIG----NDFKLKCEPKEGSLPLQF-EWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYS 188
Query: 292 LEYGTLLCWARNEQGSQRTPCTFHV 316
GT C +N GS + C +
Sbjct: 189 ---GTYSCTVQNRVGSDQ--CMLRL 208
Score = 27.3 bits (60), Expect = 6.7
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 12 PVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQDGST- 69
C G + C + Q+ W S + P +
Sbjct: 125 TRCFVDGSEEIG----NDFKLKCEPKEGSLPLQF-EW-QKLSDSQTMPTPWLAEMTSPVI 178
Query: 70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV 104
SV + GT C +N G+ + C +
Sbjct: 179 SVKNASSEYS---GTYSCTVQNRVGSDQ--CMLRL 208
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 47.3 bits (112), Expect = 2e-06
Identities = 25/188 (13%), Positives = 45/188 (23%), Gaps = 29/188 (15%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNN---ASAGRIIT--------NQTLVLQSV 182
G + +C + L + N + R + SV
Sbjct: 16 VGSSVSLECDFDRRECTE-LEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 183 TRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
G Y C I K + + + + RI +V
Sbjct: 75 QVRDSGQYRCLVICGAAWD---------YKYLTVKVKASYMRI----DTRILEVPGTGEV 121
Query: 243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR 302
++C P A+ +W + + P + +G V C
Sbjct: 122 QLTCQARGYPLAE-VSWQ---NVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFW 177
Query: 303 NEQGSQRT 310
N + T
Sbjct: 178 NAHMKELT 185
Score = 27.7 bits (61), Expect = 5.5
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 16 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS-----TS 70
+ RI +V ++C P A+ +W N S P + I+ TS
Sbjct: 107 RIDTRILEVPGTGEVQLTCQARGYPLAE-VSW-QNVSV----PANTSHIRTPEGLYQVTS 160
Query: 71 VARYTPTSELEYGTLLCWARNEQGNQRT 98
V R P C N + T
Sbjct: 161 VLRLKPQPS---RNFSCMFWNAHMKELT 185
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 46.5 bits (110), Expect = 2e-06
Identities = 27/188 (14%), Positives = 51/188 (27%), Gaps = 40/188 (21%)
Query: 134 EGVDIYFDCH-IQANPPYKKLIWTHNGITI-------SNNASAGR--IITNQTLVLQSVT 183
G I + Q ++ W + +G I+ N L ++++T
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 184 RHSGGLYACSAINSQGEGGSTP-FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
R G Y + ++ G DL I +MV+ +P+
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVS-------KPMIYWE---------CSNA 113
Query: 243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR 302
++C V + + S Q + A + C A
Sbjct: 114 TLTCEVLEGTDVEL-KLYQGKEHLRSLRQKTMSYQW-TNLRAPFK-----------CKAV 160
Query: 303 NEQGSQRT 310
N +
Sbjct: 161 NRVSQESE 168
Score = 36.1 bits (83), Expect = 0.007
Identities = 12/123 (9%), Positives = 27/123 (21%), Gaps = 26/123 (21%)
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
GT + G + + V KP + E + C
Sbjct: 74 GTYNVTVYSTNGTRILNKALDL----RILEMVSKPMIYW------------ECSNATLTC 117
Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG 202
+ +L + + + + + + C A+N +
Sbjct: 118 EVLEGTD-VELKLYQGKEHLRSL---------RQKTMSYQWTNLRAPFKCKAVNRVSQES 167
Query: 203 STP 205
Sbjct: 168 EME 170
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 46.5 bits (110), Expect = 3e-06
Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 38/200 (19%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNG---------------ITISNNASAGR--IITNQT 176
G + A + W N I ++N R + +
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
L L ++ G Y I+++ + + L I + + I + + +
Sbjct: 72 LQLSNLKMEDTGSYRAQ-ISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM------- 123
Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
++ ++C+V+ F W + + +P + S +S YT
Sbjct: 124 --TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYT--------- 172
Query: 297 LLCWARNEQGSQRTPCTFHV 316
C A N + +
Sbjct: 173 --CIAENAVSNLSFSVSAQK 190
Score = 35.7 bits (82), Expect = 0.011
Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 36/201 (17%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP-RPLTSYSIQDGSTSVARYTPTSELEY 82
+ E V + A + + TW FN + A P + S + T+ + + +
Sbjct: 10 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 83 GTLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
+L + + + T ++ + V +
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRIL------RQLRNIQVTNH-----SQ 118
Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSG-G 188
N +++ C ++ W G T+S+ L + R S
Sbjct: 119 LFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS---------QPNLTVSWDPRISSEQ 169
Query: 189 LYACSAINSQGEGGSTPFDLN 209
Y C A N+ S
Sbjct: 170 DYTCIAENAVSN-LSFSVSAQ 189
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 44.7 bits (106), Expect = 3e-06
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 105 VKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN 164
+KA + P R + G + C + PP ++W G ++
Sbjct: 3 MKASSGDQGS-PPCFLRFP-RPVRVV---SGAEAELKCVVLGEPP-PVVVWEKGGQQLAA 56
Query: 165 NASAGRII-----TNQTLVLQSVTRHSGGLYACSAINSQGE 200
+ R+ L+L + G+Y C A N+ GE
Sbjct: 57 S---ERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGE 94
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 48.1 bits (113), Expect = 3e-06
Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 28/187 (14%)
Query: 83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPV---DKPSVQIKLGRNLNASVLNEGVDIY 139
G LC A ++ + + V+K + LG
Sbjct: 198 GQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPE-------VANVAK 250
Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-------TLVLQSVTRHSGGLYAC 192
F C + ++ T + GRI+ N ++V+ + + G Y C
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFE---GRILLNPQDKDGSFSVVITGLRKEDAGRYLC 307
Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
A + +P ++E + + V V C +
Sbjct: 308 GAHSDGQLQEGSPIQAWQLF--------VNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE 359
Query: 253 QAQYFTW 259
W
Sbjct: 360 SKSIKYW 366
Score = 39.6 bits (91), Expect = 0.001
Identities = 30/227 (13%), Positives = 53/227 (23%), Gaps = 37/227 (16%)
Query: 11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW--------------AFNNSGTAP 56
E + + V V C + W +
Sbjct: 330 EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389
Query: 57 RPLTSYSIQDGSTSVARYTPTSELEY---GTLLCWARNEQGNQRTPCTFHVVKAGECEHP 113
+ S+ + + ++L G C + + T + +
Sbjct: 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWR---TTVEIKIIEGEPNL 446
Query: 114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNG--ITISNNASAGRI 171
+V LG L F C + Y W + G S + +
Sbjct: 447 KVPGNVTAVLGETLKVPCH-------FPCKFSSYEKYW-CKWNNTGCQALPSQDEGPSKA 498
Query: 172 ITNQ-------TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
N +L L VTR G Y C G + + +
Sbjct: 499 FVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 27.7 bits (60), Expect = 8.2
Identities = 20/202 (9%), Positives = 49/202 (24%), Gaps = 31/202 (15%)
Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
C + ++N G + + +++ G Y C +
Sbjct: 46 CITLISSEGYVSSKYAGRANLTNFPENGTF----VVNIAQLSQDDSGRYKCGLGIN---S 98
Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
FD+++ + + V ++C + +
Sbjct: 99 RGLSFDVSLEVSQGPGLLNDTKVYT---------VDLGRTVTINCPFKTENAQKRKSLYK 149
Query: 262 NNSDTAPRPLTS-----------YSIQDGSTSVARYTPT-SELEY---GTLLCWARNEQG 306
+ S + T ++ ++L G LC A ++
Sbjct: 150 QIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSN 209
Query: 307 SQRTPCTFHVVKAGECEHPVAV 328
S + V+K +
Sbjct: 210 SNKKNADLQVLKPEPELVYEDL 231
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 45.1 bits (107), Expect = 3e-06
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 19/117 (16%)
Query: 89 ARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV-LNEGVDIYFDCHIQAN 147
+ G P T + P I+L R+L + G + Q
Sbjct: 2 SSGSSGTLAQPVT--------IREIAEPPK--IRLPRHLRQTYIRKVGEQLNLVVPFQGK 51
Query: 148 PPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGLYACSAINSQGE 200
P +++WT G + + + ++ R G Y S +
Sbjct: 52 PR-PQVVWTKGGAPLDTS---RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMK 104
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 44.6 bits (106), Expect = 3e-06
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 9/72 (12%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQ----TLVLQSVTRHSGG 188
G + + P W I + + + N L + + + G
Sbjct: 21 AGESVELFGKVTGTQP-ITCTWMKFRKQIQES---EHMKVENSENGSKLTILAARQEHCG 76
Query: 189 LYACSAINSQGE 200
Y N G
Sbjct: 77 CYTLLVENKLGS 88
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 44.8 bits (106), Expect = 3e-06
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNA------SAGRIITNQTLVLQSVTRHSG 187
++ + ++ NPP L W HNG + + I+ L+ T ++
Sbjct: 19 LRLEHCIEFVVRGNPP-PTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN 77
Query: 188 GLYACSAINSQGE 200
G Y A N G
Sbjct: 78 GNYTLIAKNPLGT 90
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 44.6 bits (105), Expect = 5e-06
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 14/90 (15%)
Query: 134 EGVDIYFDCHIQANPPYKK--LIWTHNGITISNNASAGRIITNQ-----------TLVLQ 180
G DI F ++A +K + W + + + + + +
Sbjct: 21 VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII 80
Query: 181 SVTRHSGGLYACSAINSQGEGGSTPFDLNI 210
+ G Y C S FDL +
Sbjct: 81 KAKDNFAGNYRCEVTYKDKF-DSCSFDLEV 109
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 44.6 bits (105), Expect = 1e-05
Identities = 21/189 (11%), Positives = 44/189 (23%), Gaps = 47/189 (24%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY----- 82
+ V ++CT Q F W +N S+ + S R L
Sbjct: 11 DTVELTCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 83 -----------GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV 131
T +C +++ + + G++L
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN----------SDTHLLQGQSLT--- 116
Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYA 191
+ I +TL + + G +
Sbjct: 117 --------LTLESPPGSS-PSVQCRSPRGKN--------IQGGKTLSVSQLELQDSGTWT 159
Query: 192 CSAINSQGE 200
C+ + +Q +
Sbjct: 160 CTVLQNQKK 168
Score = 37.6 bits (87), Expect = 0.002
Identities = 20/193 (10%), Positives = 42/193 (21%), Gaps = 52/193 (26%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-------------------N 174
+G + C + W ++ + N
Sbjct: 9 KGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIY 234
L+++++ Y C + + E F L N +L
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL------------------ 109
Query: 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEY 294
L+ + + ++ P + SV++
Sbjct: 110 --LQGQSLTLTLESPPGSSPSV-QC--------RSPRGKNIQGGKTLSVSQLELQDS--- 155
Query: 295 GTLLCWARNEQGS 307
GT C Q
Sbjct: 156 GTWTCTVLQNQKK 168
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 43.1 bits (101), Expect = 1e-05
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 135 GVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----------TLVLQSVT 183
G D+ F C ++ W + + + L L++V
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 184 RHSGGLYACSAINSQGEGGSTPFDLNIN 211
S G Y C N G S L IN
Sbjct: 85 FTSEGXYQCVISNHFGSSYSVXAXLTIN 112
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 42.4 bits (100), Expect = 1e-05
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSG 187
EG F+C + +WT G T+ ++ R + LV++
Sbjct: 21 LEGESCSFECVLSHESASDPAMWTVGGKTVGSS---SRFQATRQGRKYILVVREAAPSDA 77
Query: 188 GLYACSAINSQGE 200
G S +
Sbjct: 78 GEVVFSVRGLTSK 90
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 44.1 bits (103), Expect = 2e-05
Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 35/186 (18%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY-GTLL 86
V ++C +D++ W N + +QD S E+E G +
Sbjct: 15 TSVELTCPLDSDEN---LKWEKNGQELPQKHDKHLVLQDFS----------EVEDSGYYV 61
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDK-----------PSVQIKLGRN-LNASVLNE 134
C+ N V A + + K Q +N +
Sbjct: 62 CYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA 194
+ C + + W +G IS + T T L + + G Y C
Sbjct: 122 DGSVLLTCGLTDKT----IKWLKDGSIISPLNA-----TKNTWNLGNNAKDPRGTYQCQG 172
Query: 195 INSQGE 200
Sbjct: 173 AKETSN 178
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 45.5 bits (108), Expect = 2e-05
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 110 CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG 169
+ ++ + + + EG + F C +PP ++W + + S G
Sbjct: 378 NYFTCRRARIRDRKAQQVFVD---EGHTVQFVCRADGDPP-PAILWLSPRKHLVSAKSNG 433
Query: 170 R--IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
R + + TL ++ G Y C A N+ G S P L++
Sbjct: 434 RLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHVR 476
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 42.1 bits (99), Expect = 2e-05
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 113 PVDKPS--VQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR 170
P+ PS + + + + SV G D+ F C ++ P L+WT +
Sbjct: 2 PLAAPSKPIMVTVEEQRSQSV-RPGADVTFICTAKSKSPAYTLVWTRLHNGKL---PSRA 57
Query: 171 IITNQTLVLQSVTRHSGGLYACSAINSQGE 200
+ N L +++V G Y C+ N
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAM 87
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 44.0 bits (103), Expect = 2e-05
Identities = 38/221 (17%), Positives = 62/221 (28%), Gaps = 35/221 (15%)
Query: 24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
+R + V++ CT W + A L S +Q V +
Sbjct: 12 VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPY 71
Query: 84 TLLCWAR--------NEQGNQRTPCTFHVVKAGECEHPVD-----KPSVQIKLGRNLNAS 130
L R ++ + C AG E KP S
Sbjct: 72 QLDSQGRLVLAEAQVGDERDYV--CVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLS 129
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN---------------NASAGRIITNQ 175
V+ + C+ + P K+ W NG + ++G +
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189
Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGG-----STPFDLNIN 211
TL L+ + C+A S EG S F L ++
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
Score = 30.9 bits (69), Expect = 0.57
Identities = 11/62 (17%), Positives = 18/62 (29%)
Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
+R + V++ CT W + A L S +Q V +
Sbjct: 12 VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPY 71
Query: 296 TL 297
L
Sbjct: 72 QL 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 44.7 bits (106), Expect = 3e-05
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 110 CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASA 168
C PV ++ +LN + EG+ C + + W NG +++ A
Sbjct: 339 CYAPVI-----VEPPADLNVT---EGMAAELKCRASTSLT--SVSWITPNGTVMTHGAYK 388
Query: 169 GRIITNQ--TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
RI TL +VT G+Y C NS G + LN+
Sbjct: 389 VRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN-TTASATLNVT 432
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 43.6 bits (102), Expect = 3e-05
Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 21/190 (11%)
Query: 128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSG 187
+ + G + C W + N T TL + V+ +
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCES-PFFSWRTQIDSPLNG-KVTNEGTTSTLTMNPVSFGNE 66
Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
Y C+A + + I + P+ + + V C+
Sbjct: 67 HSYLCTATCESRKL-EKGIQVEIYSFPKDPEIHLSGPL-----------EAGKPITVKCS 114
Query: 248 V-DANPQAQY-FTWAFNN----SDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
V D P + + S S++ S V +TP E L+C A
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEV-TFTPVIEDIGKVLVCRA 173
Query: 302 RNEQGSQRTP 311
+ +
Sbjct: 174 KLHIDEMDSV 183
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 44.4 bits (105), Expect = 4e-05
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 15/107 (14%)
Query: 110 CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASA 168
C P + R+LN S EG C P + W NG +S+ +
Sbjct: 350 CSAPF-----IMDAPRDLNIS---EGRMAELKCR--TPPM-SSVKWLLPNGTVLSHASRH 398
Query: 169 GRI--ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKM 213
RI + + TL V G+Y C N G + LN++
Sbjct: 399 PRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNVSTA 444
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 41.5 bits (97), Expect = 4e-05
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 14/92 (15%)
Query: 134 EGVDIYFDCHIQANPPYKK--LIWTHNGITISNNASAGRIITNQ-----------TLVLQ 180
G I F + K + W ++ + + L +
Sbjct: 18 VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHIT 77
Query: 181 SVTRHSGGLYACSAINSQGEGGSTPFDLNINK 212
G Y C + F+L +++
Sbjct: 78 DAQPAFTGSYRCEVSTKDKF-DCSNFNLTVHE 108
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 41.1 bits (97), Expect = 5e-05
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHSGG 188
G D+ C + + W + I + + T LV++ + G
Sbjct: 22 PGEDVELRCELSRAGT--PVHWLKDRKAIRKSQ---KYDVVCEGTMAMLVIRGASLKDAG 76
Query: 189 LYACSAINSQGE 200
Y C S+
Sbjct: 77 EYTCEVEASKST 88
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 42.2 bits (99), Expect = 6e-05
Identities = 24/192 (12%), Positives = 48/192 (25%), Gaps = 46/192 (23%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHN------------GITISNNASAGRI---ITNQTLV 178
G ++ Y++L W H T+ + R+ TN L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR 238
+ +V++ G Y ++ + + + +MV +P+
Sbjct: 73 IYNVSKEDRGDYYMRMLHETEDQWK--ITMEVYEMV-------SKPMIYWE--------- 114
Query: 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 298
++C V + L S + S
Sbjct: 115 CSNATLTCEVLEGTDVEL-KLYQGK-----EHLRSLRQKTMSYQWTNLR-------APFK 161
Query: 299 CWARNEQGSQRT 310
C A N +
Sbjct: 162 CKAVNRVSQESE 173
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 40.9 bits (96), Expect = 7e-05
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR----IITNQTLVLQSV---- 182
++++G +C + P + W G + + R ++ + +L +
Sbjct: 20 IVSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 183 -TRHSGGLYACSAINSQGEGGSTPFDLNIN 211
+R G+Y C A N GE S L +
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 42.9 bits (101), Expect = 1e-04
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLYAC 192
G + C + K+ + + + + S G + N L + V GG+Y C
Sbjct: 260 LGDTLTIRCDTKQQGM-TKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTC 318
Query: 193 SAINSQGEGGSTPFDLNINKM 213
A+ + +L +
Sbjct: 319 YAMGETFN-ETLSVELKVYNF 338
Score = 35.2 bits (81), Expect = 0.028
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 220 SIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT-SYSIQD 278
S+D C + ++ + A + + + C + + +N + S S+++
Sbjct: 242 SLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKV-WVSPSNEQVLSQGSNGSVSVRN 300
Query: 279 GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVS 329
G + G C+A E ++ V H ++
Sbjct: 301 GDLFF---KKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLN 348
Score = 34.4 bits (79), Expect = 0.042
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT--SYSIQDG 67
D C + ++ + A + + + C W ++ + S S+++G
Sbjct: 244 DFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMT--KVWVSPSNEQVLSQGSNGSVSVRNG 301
Query: 68 STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVV 105
+ G C+A E N+ V
Sbjct: 302 DLFF---KKVQVEDGGVYTCYAMGETFNETLSVELKVY 336
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 42.1 bits (99), Expect = 1e-04
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGL 189
EG + C + A P + W +G + ++ + I N L + + + G
Sbjct: 32 EGNQVNITCEVFAYPS-ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 190 YACSAINSQGE 200
Y C+A+N G+
Sbjct: 91 YNCTAVNRIGQ 101
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 42.9 bits (101), Expect = 1e-04
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 106 KAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNN 165
+ + D+ Q + + + EG F C + A+ P + W + + +
Sbjct: 468 EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSP-PVVTWHKDDRELKQS 526
Query: 166 ASAGRIITNQ-----TLVLQSVTRHSGGLYACSAINSQGE 200
+ + L + V G Y A NS G
Sbjct: 527 V---KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT 563
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 39.6 bits (93), Expect = 1e-04
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHSGG 188
G +I C I N P K WT NG+ + + R+ LV+ + G
Sbjct: 21 LGKEICLKCEISENIPGK---WTKNGLPVQES---DRLKVVQKGRIHKLVIANALTEDEG 74
Query: 189 LYACSAINSQGE 200
Y +
Sbjct: 75 DYVFAPDAYNVT 86
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 40.1 bits (93), Expect = 2e-04
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 132 LNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----------TLVLQ 180
L+ G + +C + W + + R + Q TL +
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 181 SVTRHSGGLYACSAINSQGE 200
VTR GLY C+A +
Sbjct: 80 GVTRSDQGLYTCAASSGLMT 99
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 39.2 bits (91), Expect = 3e-04
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 132 LNEGVDIYFDC---HIQANP-PYKKLIWTHNGITISNN---------ASAGRIITNQTLV 178
L+ V+++ C + P P L W NG ++ +A + + L
Sbjct: 9 LHTAVEMHHWCIPFSVDGQPAP--SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66
Query: 179 LQSVTRHSGGLYACSAINSQGE 200
L T + G Y A N G+
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQ 88
Score = 33.0 bits (75), Expect = 0.047
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 10/109 (9%)
Query: 232 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSE 291
+++ A+ + +VD P W FN S + + +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSL-RWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66
Query: 292 LEYGTLL------CWARNEQGSQRTPCTFHVVKA---GECEHPVAVSHR 331
L T + A N G + E P+ ++
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNS 115
Score = 31.8 bits (72), Expect = 0.11
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 7/106 (6%)
Query: 20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSE 79
+++ A+ + +VD P W FN S + + +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSL-RWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66
Query: 80 LEYGTLL------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
L T + A N G + +P D
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPD 112
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 41.1 bits (95), Expect = 3e-04
Identities = 25/166 (15%), Positives = 40/166 (24%), Gaps = 24/166 (14%)
Query: 173 TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQR 232
TL L V GG Y C T F L+ +V + S
Sbjct: 88 AAPTLRLTHVHPQDGGRYWCQVAQ---WSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAE 144
Query: 233 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL 292
+ + ++C A TW + +Y +SE+
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANV-TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEI 203
Query: 293 EY-------GTLL-------------CWARNEQGSQRTPCTFHVVK 318
L+ C QG + ++K
Sbjct: 204 AGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 31.4 bits (70), Expect = 0.40
Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 23/110 (20%)
Query: 113 PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP-----YKKLIWTHNGITISNNAS 167
PS + + V +EG DI C Y + N T +
Sbjct: 130 TGHTPSNNVHVSTAEVVQV-DEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 168 AGR-----------------IITNQTLVLQSVTRHSGGLYACSAINSQGE 200
A + + LV+++ G C QGE
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE 238
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 39.2 bits (91), Expect = 4e-04
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 18/87 (20%)
Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNA---------------SAGRIITNQTL 177
G + C +P P ++ W G ++ + T+
Sbjct: 35 VGGSVELHCEAVGSPVP--EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92
Query: 178 VLQSVTRHSGGLYACSAINSQGEGGST 204
+ ++ G Y C A N T
Sbjct: 93 SIDTLVEEDTGTYECRASNDPDRNHLT 119
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 40.6 bits (94), Expect = 5e-04
Identities = 33/301 (10%), Positives = 81/301 (26%), Gaps = 50/301 (16%)
Query: 28 EQVLVSCTVDAN---PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 84
+ ++ TV + P +TW ++ P +T+ + G+
Sbjct: 18 DGFTLTATVAGDEPLPSNLTYTWTKDDQ-----PHE------NNTATLTVADATSENAGS 66
Query: 85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
++ +++ E + +P ++ D+ +
Sbjct: 67 YKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHF----------YVSSQTDVELHATV 116
Query: 145 QA---NPPYKKLI----WTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS 197
+ P W+ I T Q + +Q T G+Y
Sbjct: 117 KFSGGKTPADNYELHYSWSKGEDVID---------TTQDITIQEFTADKNGVYTVKVWGE 167
Query: 198 QGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
+ ++ + +N+ + ++ + + +E ++ + N +Y
Sbjct: 168 SEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY- 226
Query: 258 TWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEY--------GTLLCWARNEQGSQR 309
W + + P S + TP L C A+ Q +
Sbjct: 227 NW-YLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIED 285
Query: 310 T 310
Sbjct: 286 E 286
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 38.1 bits (89), Expect = 5e-04
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 113 PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII 172
P KP + + + G F+ + K+ W G IS + +
Sbjct: 3 PGKKPVSAFS--KKPRSVEVAAGSPAVFEAETERAGV--KVRWQRGGSDISAS---NKYG 55
Query: 173 -----TNQTLVLQSVTRHSGGLYACSAINSQGE 200
T TL ++ V G YA A +S+ +
Sbjct: 56 LATEGTRHTLTVREVGPADQGSYAVIAGSSKVK 88
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 39.8 bits (92), Expect = 5e-04
Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 19/178 (10%)
Query: 146 ANPPYKKLIWTHNGITISNNASAGRI-------ITNQTLVLQSVTRHSGGLYACSAINSQ 198
P Y +++ T+N + GR N +L + G Y
Sbjct: 46 EIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVER-- 103
Query: 199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258
G + NK+ + I++P + G + + +A P + +
Sbjct: 104 --GRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTF-S 160
Query: 259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
W N T S TP E L C + + T T +
Sbjct: 161 WTGNALSPLDPETTRSSEL-------TLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 38.1 bits (89), Expect = 6e-04
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII--- 172
S Q+++ +++ + F C + W NG+ + + RI
Sbjct: 4 GSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKV--TGKWYKNGVEVRPS---KRITISH 58
Query: 173 --TNQTLVLQSVTRHSGGLYACSAINSQGE 200
LV+ V G Y
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYALS 88
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 36.9 bits (86), Expect = 0.001
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHSGG 188
EG C + + + W + + + LV++++ G
Sbjct: 22 EGGAATLRCVLSSVAA--PVKWCYGNNVLRPG---DKYSLRQEGAMLELVVRNLRPQDSG 76
Query: 189 LYACSA 194
Y+CS
Sbjct: 77 RYSCSF 82
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 36.9 bits (86), Expect = 0.001
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN---QT 176
I++ + L + G +F+ + W G ++ + II +
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELSEPDV--HGQWKLKGQPLAASPDC-EIIEDGKKHI 61
Query: 177 LVLQSVTRHSGGLYACSAINSQGE 200
L+L + G + A N++
Sbjct: 62 LILHNCQLGMTGEVSFQAANTKSA 85
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 37.4 bits (87), Expect = 0.001
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSVTRHSGGL 189
EG F C I + + W + + N I L L+ + G
Sbjct: 27 EGSSATFRCRISPANY-EPVHWFLDKTPLHAN-ELNEIDAQPGGYHVLTLRQLALKDSGT 84
Query: 190 YACSA 194
A
Sbjct: 85 IYFEA 89
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 37.0 bits (86), Expect = 0.001
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII---- 172
V I ++ + + C + W +G + + ++
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDF--PATWYKDGQKVEES---ELLVVKMD 61
Query: 173 -TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
L+L G + C EG S F + +
Sbjct: 62 GRKHRLILPEAKVQDSGEFECRT-----EGVSAFFGVTVQ 96
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 38.5 bits (89), Expect = 0.002
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 15/142 (10%)
Query: 166 ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPV 225
A G + + +L + + G Y C + S L + + +P
Sbjct: 69 ARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV----------LAKPQ 118
Query: 226 CKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TS 282
Q++ + + P AQ TW ++ P+ G+ TS
Sbjct: 119 NTAEVQKVQLTGEPVPMARCVSTGGRPPAQI-TW-HSDLGGMPQTSQVPGFLSGTVTVTS 176
Query: 283 VARYTPTSELEYGTLLCWARNE 304
+ P+S+++ + C +E
Sbjct: 177 LWILVPSSQVDGKQVTCKVEHE 198
Score = 31.6 bits (71), Expect = 0.28
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 27 NEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS---TSVARYTPTSELEY 82
+ C P AQ TW ++ G P+ G+ TS+ P+S+++
Sbjct: 131 EPVPMARCVSTGGRPPAQI-TW-HSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDG 188
Query: 83 GTLLCWARNEQGNQ 96
+ C +E +
Sbjct: 189 KQVTCKVEHESFEK 202
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII----TNQTLVLQSVTRHSGGL 189
G + +C + + + W NG I + I L+++ T+
Sbjct: 21 CGERVELECEVSEDDA--NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAE 78
Query: 190 YACSAINSQGE 200
Y+ Q
Sbjct: 79 YSVMTTGGQSS 89
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN---QTLVLQSVTRHSGGLY 190
+G I + A+ ++ W NG I + S + +TL + + Y
Sbjct: 30 KGHKIRLTVEL-ADHD-AEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAY 87
Query: 191 ACSAINSQGE 200
C +
Sbjct: 88 QCVVGGEKCS 97
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 36.2 bits (84), Expect = 0.003
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII------TNQTLVLQSVTRHSG 187
G + + + +++W NG+ ++ S L+ V +
Sbjct: 22 VGDRVEMAV--EVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDR 79
Query: 188 GLYACSAINSQGE 200
G Y Q E
Sbjct: 80 GRYQVITNGGQCE 92
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 37.9 bits (87), Expect = 0.003
Identities = 16/176 (9%), Positives = 37/176 (21%), Gaps = 9/176 (5%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87
+ + + C V+ T + + + + + + C
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA--VGEPAEVTTTVLVRRDHHGANFSC 159
Query: 88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN 147
+ Q F A P+ +L + VL C +
Sbjct: 160 RTELDLRPQ-GLELFENTSAPYQLQTFVLPATPPQLV---SPRVLEVDTQGTVVCSLDGL 215
Query: 148 PPYKKLIWTH---NGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
P + + + + V + C+ I
Sbjct: 216 FPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS 271
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 36.2 bits (84), Expect = 0.003
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 11/67 (16%)
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHSG 187
EG C + P + W T+ + R L ++ +
Sbjct: 32 TEGATAVLRCELSKMAPVE---WWKGHETLRDG---DRHSLRQDGARCELQIRGLVAEDA 85
Query: 188 GLYACSA 194
G Y C
Sbjct: 86 GEYLCMC 92
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 35.4 bits (82), Expect = 0.004
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 125 RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-----TNQTLVL 179
++L +EG C + P + W T+ + GR T L +
Sbjct: 13 QDLKTKEASEGATATLQCELSKVAPVE---WKKGPETLRDG---GRYSLKQDGTRCELQI 66
Query: 180 QSVTRHSGGLYACSAINSQGEG 201
++ G Y+C +
Sbjct: 67 HDLSVADAGEYSCMCGQERTSA 88
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 36.8 bits (84), Expect = 0.007
Identities = 37/249 (14%), Positives = 70/249 (28%), Gaps = 42/249 (16%)
Query: 24 ALRNEQVLVSCTVDANPQAQ--YFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE 81
E VL+ C V + W F+ + + S R+ S L
Sbjct: 17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV 76
Query: 82 Y-------------------GTLLCWARNEQGNQRTPCTFHV-----------VKAGE-- 109
G C R + + + V+ G+
Sbjct: 77 GDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTT 136
Query: 110 ---CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA 166
C + K+ ++ E + + ++ L N + ++ +
Sbjct: 137 QMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDI 196
Query: 167 SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVC 226
S + ++ LQ+V G+Y CS + E T L++ + S P
Sbjct: 197 SRN----DGSIKLQTVKESDQGIYTCSIYVGKLESRKT-IVLHVVQDEFQRTISPTPPTD 251
Query: 227 KQSQQRIYG 235
K Q + G
Sbjct: 252 KGQQGILNG 260
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 36.5 bits (84), Expect = 0.007
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 22/140 (15%)
Query: 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRI 233
N L + V G+Y C + +N + +PV
Sbjct: 79 NAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPV-------- 130
Query: 234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS-----TSVARYTP 288
+ ++C + P+A+ W ++ T+ + + TS R
Sbjct: 131 -----TSEHELTCQAEGYPKAEV-IWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT 184
Query: 289 TSELEYGTLLCWARNEQGSQ 308
T+ C R +
Sbjct: 185 TTN---EIFYCTFRRLDPEE 201
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 36.8 bits (84), Expect = 0.008
Identities = 28/203 (13%), Positives = 52/203 (25%), Gaps = 19/203 (9%)
Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA 194
G + C + W ++ S + L+L+SV H G Y+C
Sbjct: 21 GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR-WAGMGRRLLLRSVQLHDSGNYSCYR 79
Query: 195 INSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA 254
L ++ P Q L N +
Sbjct: 80 AGRPAGT----VHLLVD----------VPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTT 125
Query: 255 QYFTWAF---NNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR-T 310
+ N+ + YS + S P + + + + GS+
Sbjct: 126 KAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSK 185
Query: 311 PCTFHVVKAGECEHPVAVSHRYV 333
TF + + P ++ V
Sbjct: 186 TQTFQGCGILQPDPPANITVTAV 208
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 35.5 bits (81), Expect = 0.008
Identities = 13/130 (10%), Positives = 33/130 (25%), Gaps = 38/130 (29%)
Query: 103 HVVKAGECEHPVDKPSVQIKLGRNLNASVLN-EGVDIYFDCHIQANPPYKKLIWTHNGIT 161
H + + + P + + + +++ G + D I +P +IW
Sbjct: 5 HHHSSRQ-----EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPA-PTVIWQKAITQ 58
Query: 162 ISNNASAGRIITNQ-------------------------------TLVLQSVTRHSGGLY 190
+ + + ++ + G+Y
Sbjct: 59 GNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVY 118
Query: 191 ACSAINSQGE 200
+ N GE
Sbjct: 119 TVTVKNPVGE 128
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 36.7 bits (83), Expect = 0.010
Identities = 7/60 (11%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 137 DIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN 196
C ++N ++ W + + ++ + L++ +++ G+Y C +
Sbjct: 550 TAELKCSQKSNLA--RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 607
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 34.2 bits (79), Expect = 0.013
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSGG 188
E F C + + W + + + G+ +Q L + ++ +
Sbjct: 22 EKGTAVFTCKTEHPAA--TVTWRKGLLELRAS---GKHQPSQEGLTLRLTISALEKADSD 76
Query: 189 LYACSA 194
Y C
Sbjct: 77 TYTCDI 82
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 33.6 bits (77), Expect = 0.025
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT 173
S I + C + P+ ++ WT +G + + ++
Sbjct: 7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVVES---PALLL 61
Query: 174 NQ-----TLVLQSVTRHSGGLYACSAINSQ 198
+ LVL +V G Y C +
Sbjct: 62 QKEDTVRRLVLPAVQLEDSGEYLCEIDDES 91
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 35.4 bits (80), Expect = 0.026
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 3/108 (2%)
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C + V+++ P + L L Y C +++
Sbjct: 467 CGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES 526
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA 194
W H + G N L ++++T G Y C A
Sbjct: 527 RHA--TYSWRHKENVEQSCEP-GHQSPNCILFIENLTAQQYGHYFCEA 571
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 35.5 bits (81), Expect = 0.028
Identities = 16/138 (11%), Positives = 32/138 (23%), Gaps = 13/138 (9%)
Query: 75 TPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNE 134
+ Y + + V+ P + +N
Sbjct: 128 STFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNV---------EVNA 178
Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN----QTLVLQSVTRHSGGLY 190
G F C +W ++ ++ + + + T+ G Y
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238
Query: 191 ACSAINSQGEGGSTPFDL 208
C G G S +L
Sbjct: 239 RCMIRTEGGVGISNYAEL 256
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 33.1 bits (76), Expect = 0.029
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHSG 187
++G + F + A+P + + W NG I + + I + L + +
Sbjct: 21 DKGGRVRFVVEL-ADPKLE-VKWYKNGQEIRPS---TKYIFEHKGCQRILFINNCQMTDD 75
Query: 188 GLYACSA 194
Y +A
Sbjct: 76 SEYYVTA 82
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 32.4 bits (74), Expect = 0.059
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
G C + ++ W +G +S +S+ + LV+Q + G
Sbjct: 24 EAGASATLSCEVAQAQT--EVTWYKDGKKLS--SSSKVRVEAVGCTRRLVVQQAGQAEAG 79
Query: 189 LYACSAINSQGE 200
Y+C A Q
Sbjct: 80 EYSCEAGGQQLS 91
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 32.4 bits (73), Expect = 0.059
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-TLVLQSVTRHS-GGLYAC 192
G + C P +++W HN I + I +++ L L+ + G Y C
Sbjct: 21 GTTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 193 SAINSQGEGGS 203
S+ E +
Sbjct: 78 YPRGSKPEDAN 88
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 33.9 bits (76), Expect = 0.064
Identities = 24/210 (11%), Positives = 43/210 (20%), Gaps = 32/210 (15%)
Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
G + C + WT + S+ + + +TL +Q G Y C
Sbjct: 20 PGEMVVLTCDTPEEDG---ITWTLDQ-------SSEVLGSGKTLTIQVKEFGDAGQYTCH 69
Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
+L+ E + + + C
Sbjct: 70 KGGEVLSH-------------SLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSG 116
Query: 254 AQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313
W S S GS+ + N++ C
Sbjct: 117 RFTCWWLTTIS---TDLTFSVKSSRGSSDP-QGVTCGAATLSAERVRGDNKEYEYSVECQ 172
Query: 314 FHVVKAGECEHPVAVSHRYVAKLYATNAKG 343
E S + A +
Sbjct: 173 EDSACPAAEE-----SLPIEVMVDAVHKLK 197
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 32.6 bits (73), Expect = 0.15
Identities = 22/189 (11%), Positives = 39/189 (20%), Gaps = 34/189 (17%)
Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
+ G C + + W ++ S L +++ + + G
Sbjct: 18 AVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT---GRSVLTVRNASLSAAGTR 74
Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
C L + N + S V V+CT
Sbjct: 75 VCVGSCGGRT-FQHTVQLLVYAFPNQLTVSPAALV-------------PGDPEVACTAHK 120
Query: 251 NPQAQYFTWAFN--------------NSDTAPRPLTSYSIQDGS---TSVARYTPTSELE 293
+F+ + +D T R P
Sbjct: 121 VTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPV 180
Query: 294 YGTLLCWAR 302
L C A
Sbjct: 181 PPALYCQAT 189
Score = 27.2 bits (59), Expect = 7.2
Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 6/94 (6%)
Query: 223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTS 282
+P+ + + + ++C + + W ++ L + G S
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDT-----SLGAVQSDTGR-S 59
Query: 283 VARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
V S GT +C + + V
Sbjct: 60 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 31.9 bits (72), Expect = 0.19
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 21/152 (13%)
Query: 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRI 233
N ++V+ ++ G Y C + + + + V F +
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP--------SISD 115
Query: 234 YGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL 292
+ + + C+ P+ +W N + T+ S QD T + Y +S+L
Sbjct: 116 FEIPTSNIRRIICSTSGGFPEPHL-SW-LENGEELNAINTTVS-QDPETEL--YAVSSKL 170
Query: 293 EY-----GTLLCWARNEQGSQRTPCTFHVVKA 319
++ + +C + TF+ A
Sbjct: 171 DFNMTTNHSFMCLIKYGHLRV--NQTFNWNTA 200
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 30.5 bits (68), Expect = 0.31
Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 14/90 (15%)
Query: 134 EGVDIYFDCHIQANPPYKK--LIWTHNGITISNNASAGRIITNQT-----------LVLQ 180
G D + K + W + S R ++ L +
Sbjct: 26 TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIG 85
Query: 181 SVTRHSGGLYACSAINSQGEGGSTPFDLNI 210
V G Y S F++++
Sbjct: 86 KVVLGDRGYYRLEVKAKDTC-DSCGFNIDV 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.0
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 335 KLYATNAKGAGPMVLMKTNTE 355
KLYA + + P + +K E
Sbjct: 30 KLYADD---SAPALAIKATME 47
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 29.5 bits (66), Expect = 1.8
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 9/91 (9%)
Query: 115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN 174
DKP + ++V+ G + CH + + +
Sbjct: 23 DKPFLSA-----WPSAVVPRGGHVTLRCHYR--HRFNNFMLYKEDRIHIPIFHGRI--FQ 73
Query: 175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTP 205
++ + VT G Y C + G +
Sbjct: 74 ESFNMSPVTTAHAGNYTCRGSHPHSPTGWSA 104
Score = 27.9 bits (62), Expect = 6.1
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 112 HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI 171
KPS+ G ++ G + C ++ ++ GI+ + G+I
Sbjct: 115 GNHRKPSLLAHPG-----PLVKSGERVILQCW--SDIMFEHFFLHKEGISKDPSRLVGQI 167
Query: 172 ---ITNQTLVLQSVTRHSGGLYACSAINSQG-EGGSTPFD 207
++ + + G Y C + S P D
Sbjct: 168 HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSD 207
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 28.4 bits (63), Expect = 2.0
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 134 EGVDIYFDCHIQANPPYKKLIW-THNGITISNN----ASAGRII------TNQTLVLQSV 182
EG + C L W T +G TI N + ++ + +V
Sbjct: 15 EGQTLTLKCVTSLRKNSS-LQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV 73
Query: 183 TRHSGGLYACSAINS 197
T G+Y C +
Sbjct: 74 TLQDEGVYKCLHYSD 88
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease,
transmembrane, hydrolase; 1.90A {Clostridium botulinum}
SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A*
1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A
1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A
1z0h_A 2nm1_A 3g94_A 1f82_A ...
Length = 1290
Score = 29.8 bits (66), Expect = 2.0
Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 137 DIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN 196
++F+ +I+ + W +TI+NN + +I N L + + + A I
Sbjct: 983 SVFFEYNIREDISEYINRWFF--VTITNNLNNAKIYINGKLESNTDIKDIREVIANGEII 1040
Query: 197 SQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVL 243
+ +G D + F+ + + + + + Y + L
Sbjct: 1041 FKLDGDI---DRTQFIWMKY-FSIFNTELSQSNIEERYKIQSYSEYL 1083
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 28.6 bits (64), Expect = 2.6
Identities = 25/171 (14%), Positives = 45/171 (26%), Gaps = 28/171 (16%)
Query: 28 EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYGTLL 86
+ V + C P + S + + I S+A RY
Sbjct: 23 KPVTLRC--QGPPGVDLYRL-EKLSSSRYQDQAVLFIPAMKRSLAGRYR----------- 68
Query: 87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
C +N +V KPS+ ++ G D+ C +
Sbjct: 69 CSYQNGSLWSLPSDQLELV----ATGVFAKPSLSA-----QPGPAVSSGGDVTLQCQTR- 118
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS 197
+ + G + + +VT G Y C + +S
Sbjct: 119 -YGFDQFALYKEGDPAPYKNPERW--YRASFPIITVTAAHSGTYRCYSFSS 166
>2p8g_A PAD, phenolic acid decarboxylase; 2635953, phenolic acid
decarboxylase (PAD), structural genom joint center for
structural genomics, JCSG; 1.36A {Bacillus subtilis}
PDB: 3nad_A
Length = 162
Score = 27.6 bits (61), Expect = 4.4
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 154 IWTHNGIT----ISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN 209
I+ N T I + AGR + +Q + + +T G+Y S G S F N
Sbjct: 22 IYIKNDHTIDYRIHSGMVAGRWVRDQEVNIVKLTE---GVYKVSWTEPTGTDVSLNFMPN 78
Query: 210 INKMVNLIF 218
+M +IF
Sbjct: 79 EKRMHGIIF 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.394
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,179,009
Number of extensions: 286472
Number of successful extensions: 1587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 343
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.5 bits)