Query psy3825
Match_columns 332
No_of_seqs 300 out of 2119
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 18:19:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4716|consensus 100.0 2.5E-47 5.4E-52 369.9 13.4 219 12-328 284-503 (503)
2 COG1249 Lpd Pyruvate/2-oxoglut 100.0 8.2E-43 1.8E-47 351.1 22.4 195 14-312 258-453 (454)
3 TIGR01438 TGR thioredoxin and 100.0 2.6E-40 5.6E-45 333.6 25.0 220 13-329 264-484 (484)
4 TIGR01421 gluta_reduc_1 glutat 100.0 7E-39 1.5E-43 319.5 23.9 203 8-312 244-449 (450)
5 TIGR01424 gluta_reduc_2 glutat 100.0 5.4E-39 1.2E-43 318.9 22.8 202 8-312 243-445 (446)
6 PRK06116 glutathione reductase 100.0 7E-39 1.5E-43 317.3 23.5 204 7-312 244-449 (450)
7 PLN02507 glutathione reductase 100.0 1.8E-38 4E-43 321.2 25.3 204 7-313 279-483 (499)
8 TIGR01423 trypano_reduc trypan 100.0 1.2E-38 2.7E-43 322.1 23.6 206 7-315 267-473 (486)
9 PRK07818 dihydrolipoamide dehy 100.0 4.6E-38 1E-42 313.5 24.6 199 13-315 258-458 (466)
10 TIGR03452 mycothione_red mycot 100.0 3.3E-38 7.1E-43 314.8 23.4 202 9-314 246-450 (452)
11 PTZ00153 lipoamide dehydrogena 100.0 5.3E-38 1.2E-42 328.4 25.2 222 13-315 412-652 (659)
12 PRK06370 mercuric reductase; V 100.0 7.9E-38 1.7E-42 311.2 24.0 202 11-316 254-456 (463)
13 PRK07846 mycothione reductase; 100.0 8E-38 1.7E-42 312.2 23.9 205 7-315 241-448 (451)
14 PLN02546 glutathione reductase 100.0 6.1E-38 1.3E-42 322.4 23.1 203 10-316 332-536 (558)
15 PRK07845 flavoprotein disulfid 100.0 1.2E-37 2.6E-42 311.5 24.4 204 8-315 254-458 (466)
16 KOG1335|consensus 100.0 1.7E-38 3.6E-43 311.9 17.6 205 8-317 294-499 (506)
17 PTZ00052 thioredoxin reductase 100.0 4.9E-38 1.1E-42 317.8 21.5 234 8-326 258-491 (499)
18 PRK08010 pyridine nucleotide-d 100.0 1.4E-37 3E-42 307.4 23.7 198 13-314 239-438 (441)
19 PRK14727 putative mercuric red 100.0 1.2E-37 2.5E-42 312.6 23.2 209 13-328 268-477 (479)
20 PRK05249 soluble pyridine nucl 100.0 1.5E-37 3.2E-42 308.0 23.5 201 9-314 253-454 (461)
21 PRK06292 dihydrolipoamide dehy 100.0 1.8E-37 3.9E-42 307.3 24.1 202 10-315 250-452 (460)
22 PRK06467 dihydrolipoamide dehy 100.0 1.8E-37 3.9E-42 310.9 23.9 198 13-315 259-457 (471)
23 TIGR02053 MerA mercuric reduct 100.0 2.6E-37 5.7E-42 307.1 24.4 212 12-329 250-462 (463)
24 PRK14694 putative mercuric red 100.0 2E-37 4.3E-42 309.5 23.3 209 13-329 258-467 (468)
25 PRK06115 dihydrolipoamide dehy 100.0 3.1E-37 6.7E-42 308.6 23.6 199 11-315 259-458 (466)
26 PRK13748 putative mercuric red 100.0 4.8E-37 1E-41 311.5 23.6 209 14-329 351-560 (561)
27 PTZ00058 glutathione reductase 100.0 5E-37 1.1E-41 315.9 23.2 206 11-315 319-559 (561)
28 KOG0405|consensus 100.0 4.2E-37 9.1E-42 299.4 16.6 199 11-311 270-470 (478)
29 PRK06912 acoL dihydrolipoamide 100.0 3.8E-36 8.3E-41 299.5 23.4 197 13-315 253-450 (458)
30 PRK06327 dihydrolipoamide dehy 100.0 5.6E-36 1.2E-40 299.9 23.9 198 13-315 269-467 (475)
31 PRK06416 dihydrolipoamide dehy 100.0 1.2E-35 2.6E-40 294.9 23.9 197 13-315 257-454 (462)
32 PRK07251 pyridine nucleotide-d 100.0 1.7E-35 3.7E-40 292.3 23.9 199 11-313 236-436 (438)
33 PRK05976 dihydrolipoamide dehy 100.0 5.8E-35 1.3E-39 291.7 24.7 198 13-315 266-464 (472)
34 TIGR01350 lipoamide_DH dihydro 100.0 5.1E-34 1.1E-38 282.3 23.9 199 13-315 254-453 (461)
35 PRK13512 coenzyme A disulfide 100.0 5.7E-34 1.2E-38 282.8 20.3 200 7-314 220-432 (438)
36 PRK09564 coenzyme A disulfide 100.0 3.3E-32 7.2E-37 267.9 19.8 197 12-315 230-439 (444)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.8E-31 3.9E-36 262.2 20.2 199 8-312 213-423 (427)
38 PF02852 Pyr_redox_dim: Pyridi 99.9 2.6E-23 5.6E-28 170.6 14.2 66 247-313 45-110 (110)
39 PRK14989 nitrite reductase sub 99.8 7.2E-20 1.6E-24 196.8 14.4 180 7-305 224-413 (847)
40 TIGR02374 nitri_red_nirB nitri 99.6 3.2E-14 6.9E-19 152.1 14.5 109 6-119 216-329 (785)
41 PRK04965 NADH:flavorubredoxin 99.6 6.2E-14 1.3E-18 136.3 14.6 107 7-119 218-329 (377)
42 PRK09754 phenylpropionate diox 99.5 3.5E-13 7.7E-18 132.2 15.6 107 7-119 220-335 (396)
43 COG1251 NirB NAD(P)H-nitrite r 99.3 3.1E-12 6.8E-17 134.9 10.4 86 5-95 220-309 (793)
44 TIGR01316 gltA glutamate synth 99.3 3.2E-12 6.9E-17 128.3 8.2 75 12-90 371-446 (449)
45 PTZ00318 NADH dehydrogenase-li 99.3 1.1E-11 2.4E-16 123.2 10.9 82 6-91 258-345 (424)
46 TIGR01292 TRX_reduct thioredox 99.3 8.9E-12 1.9E-16 114.6 6.8 77 10-90 220-297 (300)
47 PRK12770 putative glutamate sy 99.2 3.7E-11 8E-16 116.2 8.5 79 10-91 268-347 (352)
48 PRK12831 putative oxidoreducta 99.2 4.2E-11 9.1E-16 121.1 8.4 75 12-90 380-457 (464)
49 PRK12810 gltD glutamate syntha 99.2 5.5E-11 1.2E-15 119.9 8.3 76 12-90 384-461 (471)
50 PRK09853 putative selenate red 99.2 5.1E-11 1.1E-15 130.6 8.4 81 9-93 760-841 (1019)
51 TIGR03169 Nterm_to_SelD pyridi 99.2 9.1E-11 2E-15 112.9 9.2 81 6-90 221-307 (364)
52 TIGR03140 AhpF alkyl hydropero 99.2 2.4E-11 5.2E-16 124.0 5.0 76 12-91 434-510 (515)
53 PRK11749 dihydropyrimidine deh 99.1 7.7E-11 1.7E-15 118.1 8.0 78 10-90 369-448 (457)
54 PRK12814 putative NADPH-depend 99.1 1.2E-10 2.6E-15 122.5 8.4 75 12-90 421-497 (652)
55 TIGR01318 gltD_gamma_fam gluta 99.1 1.8E-10 3.9E-15 116.4 8.6 77 11-90 381-462 (467)
56 PRK15317 alkyl hydroperoxide r 99.1 1.1E-10 2.3E-15 119.2 6.4 76 12-91 433-509 (517)
57 COG1252 Ndh NADH dehydrogenase 99.1 4.2E-10 9E-15 113.1 10.1 94 5-102 238-344 (405)
58 PRK12778 putative bifunctional 99.1 2.1E-10 4.6E-15 122.1 8.5 76 12-90 670-746 (752)
59 PRK12769 putative oxidoreducta 99.1 2.3E-10 5E-15 120.0 8.5 76 12-90 568-648 (654)
60 TIGR03315 Se_ygfK putative sel 99.1 2.2E-10 4.7E-15 125.9 7.9 80 10-93 758-839 (1012)
61 TIGR01317 GOGAT_sm_gam glutama 99.1 2.9E-10 6.3E-15 115.6 8.0 75 12-90 398-475 (485)
62 PRK10262 thioredoxin reductase 99.0 2E-10 4.4E-15 109.1 5.2 74 12-90 232-311 (321)
63 PRK12809 putative oxidoreducta 99.0 4.4E-10 9.5E-15 117.8 8.1 78 11-91 550-632 (639)
64 PRK13984 putative oxidoreducta 99.0 4.7E-10 1E-14 116.3 7.6 76 11-90 521-598 (604)
65 TIGR03143 AhpF_homolog putativ 99.0 5.6E-10 1.2E-14 115.1 6.6 71 16-90 230-305 (555)
66 PRK12771 putative glutamate sy 99.0 1.2E-09 2.5E-14 112.7 7.7 76 10-90 362-440 (564)
67 PRK12779 putative bifunctional 99.0 1.2E-09 2.5E-14 119.7 7.9 79 10-91 544-624 (944)
68 COG0446 HcaD Uncharacterized N 99.0 9.6E-09 2.1E-13 97.9 13.3 110 7-120 216-337 (415)
69 COG0492 TrxB Thioredoxin reduc 98.9 1.7E-09 3.6E-14 104.9 6.3 77 10-90 220-297 (305)
70 PRK12775 putative trifunctiona 98.9 3E-09 6.6E-14 117.1 8.3 76 12-90 670-751 (1006)
71 KOG1336|consensus 98.8 2.7E-09 5.9E-14 108.4 5.2 81 6-90 291-381 (478)
72 PLN02852 ferredoxin-NADP+ redu 98.5 1.9E-07 4E-12 96.1 7.7 81 9-91 335-419 (491)
73 PF07992 Pyr_redox_2: Pyridine 98.5 1.3E-07 2.8E-12 82.5 3.9 60 8-68 102-197 (201)
74 KOG2495|consensus 98.5 2.7E-07 5.8E-12 93.4 6.5 78 9-90 310-393 (491)
75 KOG0404|consensus 98.4 1.2E-07 2.6E-12 89.7 3.0 77 7-87 234-312 (322)
76 COG3634 AhpF Alkyl hydroperoxi 98.4 1.2E-07 2.6E-12 94.3 2.4 77 10-90 434-511 (520)
77 KOG1346|consensus 98.3 3.8E-07 8.3E-12 92.4 2.6 84 7-93 428-520 (659)
78 COG0493 GltD NADPH-dependent g 97.8 7.9E-06 1.7E-10 83.6 1.5 79 10-90 367-447 (457)
79 TIGR01372 soxA sarcosine oxida 97.7 5.1E-05 1.1E-09 83.9 6.9 73 10-90 393-468 (985)
80 KOG2755|consensus 97.5 7.2E-05 1.6E-09 72.4 3.3 54 13-69 267-321 (334)
81 KOG0399|consensus 97.4 0.00013 2.7E-09 81.2 3.7 76 12-90 2039-2116(2142)
82 PRK05329 anaerobic glycerol-3- 97.3 0.0006 1.3E-08 69.2 7.7 77 12-91 302-418 (422)
83 COG1148 HdrA Heterodisulfide r 96.8 0.0024 5.1E-08 66.4 6.3 78 9-89 457-540 (622)
84 PRK06854 adenylylsulfate reduc 96.0 0.0083 1.8E-07 63.3 4.8 43 48-90 371-428 (608)
85 PRK08275 putative oxidoreducta 95.3 0.018 3.9E-07 59.9 4.2 44 47-90 357-401 (554)
86 PRK13800 putative oxidoreducta 95.1 0.021 4.6E-07 62.9 4.4 45 46-90 361-406 (897)
87 KOG3851|consensus 94.4 0.054 1.2E-06 54.3 4.7 73 12-90 280-357 (446)
88 PRK07804 L-aspartate oxidase; 94.1 0.064 1.4E-06 55.8 4.8 46 46-91 357-411 (541)
89 PRK09231 fumarate reductase fl 93.8 0.1 2.2E-06 54.9 5.6 46 46-91 358-412 (582)
90 PRK06263 sdhA succinate dehydr 93.4 0.09 1.9E-06 54.5 4.4 46 46-91 348-401 (543)
91 TIGR02061 aprA adenosine phosp 93.2 0.088 1.9E-06 56.1 4.1 38 53-90 400-439 (614)
92 PRK09077 L-aspartate oxidase; 93.0 0.13 2.7E-06 53.5 4.8 46 46-91 353-407 (536)
93 TIGR01176 fum_red_Fp fumarate 92.5 0.15 3.3E-06 53.7 4.6 46 46-91 357-411 (580)
94 PRK08071 L-aspartate oxidase; 92.1 0.18 4E-06 52.0 4.7 45 47-91 333-386 (510)
95 TIGR00551 nadB L-aspartate oxi 92.1 0.2 4.2E-06 51.3 4.8 46 46-91 333-387 (488)
96 TIGR01812 sdhA_frdA_Gneg succi 91.9 0.19 4.1E-06 52.2 4.5 45 46-90 342-399 (566)
97 COG2509 Uncharacterized FAD-de 91.9 0.15 3.2E-06 52.9 3.5 42 48-90 438-480 (486)
98 PRK08401 L-aspartate oxidase; 91.7 0.24 5.2E-06 50.5 4.9 46 46-91 310-364 (466)
99 TIGR01811 sdhA_Bsu succinate d 91.3 0.24 5.1E-06 52.5 4.5 45 46-90 370-422 (603)
100 PLN02172 flavin-containing mon 91.1 0.51 1.1E-05 48.4 6.5 82 6-93 266-352 (461)
101 PRK06452 sdhA succinate dehydr 90.7 0.32 7E-06 51.0 4.8 45 46-90 346-400 (566)
102 COG0029 NadB Aspartate oxidase 90.7 0.27 6E-06 51.4 4.2 46 47-92 342-396 (518)
103 PRK08641 sdhA succinate dehydr 90.7 0.27 5.9E-06 51.8 4.2 45 46-90 355-407 (589)
104 PRK07512 L-aspartate oxidase; 90.6 0.33 7.1E-06 50.2 4.6 46 46-91 341-395 (513)
105 KOG4716|consensus 90.2 0.094 2E-06 53.0 0.3 23 10-32 155-177 (503)
106 PRK06069 sdhA succinate dehydr 88.8 0.46 1E-05 49.8 4.2 46 46-91 352-412 (577)
107 PRK07573 sdhA succinate dehydr 88.6 0.51 1.1E-05 50.4 4.4 23 47-69 407-430 (640)
108 PRK07803 sdhA succinate dehydr 88.5 0.49 1.1E-05 50.3 4.1 46 46-91 391-445 (626)
109 PF00743 FMO-like: Flavin-bind 88.1 0.99 2.1E-05 47.3 6.0 84 5-93 308-396 (531)
110 PRK08626 fumarate reductase fl 87.7 0.73 1.6E-05 49.5 4.8 45 46-90 372-426 (657)
111 PRK05945 sdhA succinate dehydr 87.6 0.67 1.4E-05 48.6 4.4 46 46-91 351-411 (575)
112 PRK07395 L-aspartate oxidase; 87.5 0.7 1.5E-05 48.5 4.5 45 46-90 347-400 (553)
113 PLN02815 L-aspartate oxidase 87.2 0.71 1.5E-05 49.0 4.4 45 46-90 377-430 (594)
114 TIGR01816 sdhA_forward succina 87.1 0.72 1.6E-05 48.4 4.4 46 46-91 331-394 (565)
115 PRK08205 sdhA succinate dehydr 87.0 0.79 1.7E-05 48.2 4.6 46 46-91 356-416 (583)
116 PRK06175 L-aspartate oxidase; 85.1 1.2 2.6E-05 45.0 4.7 46 46-91 331-385 (433)
117 PRK07057 sdhA succinate dehydr 85.0 1 2.2E-05 47.6 4.2 46 46-91 361-424 (591)
118 PRK09078 sdhA succinate dehydr 84.5 1.2 2.6E-05 47.2 4.4 46 46-91 362-426 (598)
119 PRK05675 sdhA succinate dehydr 84.4 1.1 2.4E-05 47.1 4.1 44 47-90 340-402 (570)
120 PRK08958 sdhA succinate dehydr 83.9 1.4 3E-05 46.6 4.7 45 46-90 357-420 (588)
121 PRK08274 tricarballylate dehyd 83.8 1.1 2.4E-05 45.1 3.7 46 46-91 399-459 (466)
122 PLN00128 Succinate dehydrogena 83.7 1.4 3.1E-05 47.1 4.7 46 46-91 400-464 (635)
123 COG3486 IucD Lysine/ornithine 83.0 2.7 5.9E-05 43.3 6.1 83 9-93 321-414 (436)
124 PTZ00139 Succinate dehydrogena 82.0 1.5 3.2E-05 46.7 4.0 46 46-91 379-443 (617)
125 TIGR03378 glycerol3P_GlpB glyc 80.1 4.7 0.0001 41.5 6.6 41 49-89 367-418 (419)
126 KOG1800|consensus 70.8 7.1 0.00015 40.3 5.0 79 7-91 321-404 (468)
127 TIGR02485 CobZ_N-term precorri 67.8 5.8 0.00013 39.7 3.7 46 46-91 368-428 (432)
128 PRK06481 fumarate reductase fl 65.5 6.8 0.00015 40.5 3.8 46 46-91 442-501 (506)
129 PRK12837 3-ketosteroid-delta-1 63.4 12 0.00026 38.7 5.2 36 57-92 468-511 (513)
130 PRK06567 putative bifunctional 59.3 12 0.00026 42.6 4.6 56 11-90 711-766 (1028)
131 PRK12835 3-ketosteroid-delta-1 58.1 12 0.00025 39.7 4.0 47 46-92 508-569 (584)
132 TIGR00136 gidA glucose-inhibit 57.6 10 0.00022 40.9 3.6 38 51-90 348-387 (617)
133 PF01134 GIDA: Glucose inhibit 57.4 12 0.00026 38.2 3.9 38 51-90 346-385 (392)
134 PRK12842 putative succinate de 56.9 12 0.00026 39.3 3.9 46 46-91 505-565 (574)
135 PRK12839 hypothetical protein; 56.8 12 0.00027 39.4 4.0 47 46-92 506-567 (572)
136 PRK12845 3-ketosteroid-delta-1 56.6 20 0.00043 37.9 5.5 35 57-91 521-563 (564)
137 PRK12843 putative FAD-binding 55.7 12 0.00026 39.4 3.7 47 46-92 510-571 (578)
138 PF00890 FAD_binding_2: FAD bi 55.1 3.5 7.7E-05 40.5 -0.4 23 46-68 373-402 (417)
139 PRK12844 3-ketosteroid-delta-1 55.0 19 0.00041 37.9 4.9 47 46-92 488-549 (557)
140 PRK12834 putative FAD-binding 53.9 16 0.00034 38.2 4.1 46 46-91 485-548 (549)
141 TIGR01813 flavo_cyto_c flavocy 53.2 8.7 0.00019 38.3 2.0 23 46-68 384-413 (439)
142 PRK07843 3-ketosteroid-delta-1 52.6 23 0.00049 37.2 5.1 46 46-91 495-555 (557)
143 PRK07121 hypothetical protein; 52.6 23 0.00049 36.2 5.0 50 39-91 431-489 (492)
144 PRK06134 putative FAD-binding 52.2 18 0.00038 38.2 4.2 47 46-92 509-570 (581)
145 PRK05335 tRNA (uracil-5-)-meth 51.1 15 0.00033 38.1 3.4 39 51-91 321-361 (436)
146 TIGR02732 zeta_caro_desat caro 49.6 17 0.00038 37.2 3.6 36 54-89 437-473 (474)
147 COG1053 SdhA Succinate dehydro 44.6 30 0.00065 36.9 4.5 45 46-90 355-409 (562)
148 PF08671 SinI: Anti-repressor 43.0 25 0.00054 23.4 2.3 24 276-299 3-26 (30)
149 TIGR03467 HpnE squalene-associ 36.1 52 0.0011 31.7 4.4 37 54-90 381-418 (419)
150 PLN02487 zeta-carotene desatur 35.0 48 0.001 35.3 4.3 38 54-91 513-551 (569)
151 PF03486 HI0933_like: HI0933-l 34.8 39 0.00085 34.4 3.5 42 46-88 357-409 (409)
152 PF01593 Amino_oxidase: Flavin 34.2 58 0.0013 30.5 4.3 37 54-90 412-450 (450)
153 PTZ00188 adrenodoxin reductase 33.5 82 0.0018 33.5 5.6 52 9-69 362-415 (506)
154 PLN02612 phytoene desaturase 32.2 53 0.0012 34.7 4.0 38 54-91 508-546 (567)
155 TIGR01292 TRX_reduct thioredox 31.6 46 0.00099 30.5 3.1 26 7-32 91-116 (300)
156 PRK07233 hypothetical protein; 31.3 68 0.0015 31.2 4.4 38 54-91 391-429 (434)
157 PTZ00306 NADH-dependent fumara 28.2 82 0.0018 36.4 4.9 34 57-91 859-900 (1167)
158 TIGR03169 Nterm_to_SelD pyridi 27.2 44 0.00096 32.2 2.3 26 7-32 86-111 (364)
159 PF02787 CPSase_L_D3: Carbamoy 26.9 39 0.00085 28.9 1.7 39 276-314 10-48 (123)
160 PRK09754 phenylpropionate diox 24.7 62 0.0014 32.0 2.8 24 7-30 91-114 (396)
161 TIGR02730 carot_isom carotene 23.8 1.1E+02 0.0024 31.2 4.5 36 55-91 455-490 (493)
162 TIGR02731 phytoene_desat phyto 23.7 95 0.0021 31.0 3.9 36 54-89 416-452 (453)
163 PF13738 Pyr_redox_3: Pyridine 23.2 64 0.0014 27.9 2.4 26 7-32 117-144 (203)
164 PRK07846 mycothione reductase; 23.1 73 0.0016 32.4 3.1 26 7-32 119-144 (451)
165 TIGR02733 desat_CrtD C-3',4' d 22.4 1.4E+02 0.0029 30.4 4.8 36 55-91 455-490 (492)
166 TIGR01015 hmgA homogentisate 1 22.3 57 0.0012 34.0 2.1 41 190-230 18-58 (429)
167 TIGR03862 flavo_PP4765 unchara 21.6 93 0.002 31.6 3.4 45 46-90 319-372 (376)
168 COG2081 Predicted flavoprotein 21.2 71 0.0015 33.0 2.5 45 47-91 351-405 (408)
169 PRK05341 homogentisate 1,2-dio 21.0 61 0.0013 33.8 2.0 41 190-230 28-68 (438)
170 PF03413 PepSY: Peptidase prop 21.0 1.7E+02 0.0036 20.6 3.8 21 248-269 44-64 (64)
171 PLN02658 homogentisate 1,2-dio 20.8 61 0.0013 33.8 1.9 41 190-230 15-55 (435)
No 1
>KOG4716|consensus
Probab=100.00 E-value=2.5e-47 Score=369.91 Aligned_cols=219 Identities=64% Similarity=1.083 Sum_probs=201.1
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
+-+-+.|.||||+||.++++.|+|+++|+++++..|.|.||+ -+||+|+|||+||+..+.+.|+++|++.||++|+.++
T Consensus 284 ~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf 363 (503)
T KOG4716|consen 284 EGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLF 363 (503)
T ss_pred cccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHh
Confidence 334568999999999999999999999999975668999999 9999999999999998899999999999999999999
Q ss_pred CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825 91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI 170 (332)
Q Consensus 91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 170 (332)
+.....++|..+|+++||..|++.|||||++|-+.+|+||+++
T Consensus 364 ~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dniev------------------------------------- 406 (503)
T KOG4716|consen 364 AGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEV------------------------------------- 406 (503)
T ss_pred cCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEE-------------------------------------
Confidence 9888889999999999999999999999999999999887765
Q ss_pred CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825 171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250 (332)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (332)
||.||+|+||+|||| +...
T Consensus 407 -------------------------------------fH~~f~P~E~~ipqr------------------------d~~~ 425 (503)
T KOG4716|consen 407 -------------------------------------FHSYFKPLEYTIPQR------------------------DVRH 425 (503)
T ss_pred -------------------------------------eeccccceEEEcccc------------------------cCCc
Confidence 345555666666666 2345
Q ss_pred eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCccc
Q psy3825 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 328 (332)
Q Consensus 251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~ 328 (332)
||+|.||++.+++||+|.|++||+|+|+||++|+|+++|+|..+|.+++++|||.+|+|+++.++||||.||+++|||
T Consensus 426 CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~L~itKrsG~d~~~as~C 503 (503)
T KOG4716|consen 426 CYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTLSITKRSGLDPTQASCC 503 (503)
T ss_pred eEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhheeEEEEEecCCCCcccccCC
Confidence 889999998899999999999999999999999999999999999999999999999999999999999999999999
No 2
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=8.2e-43 Score=351.14 Aligned_cols=195 Identities=33% Similarity=0.537 Sum_probs=174.5
Q ss_pred EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCC
Q psy3825 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGN 92 (332)
Q Consensus 14 ~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~ 92 (332)
++++|.||+|+||+||++.|+|+++|++++ ++|+|.||+ ++|++|||||+|||+ +.++|+|+|..||++|++||+|.
T Consensus 258 ~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~-~rg~I~VD~~~~Tnvp~IyA~GDV~-~~~~Lah~A~~eg~iaa~~i~g~ 335 (454)
T COG1249 258 TIEADAVLVAIGRKPNTDGLGLENAGVELD-DRGFIKVDDQMTTNVPGIYAIGDVI-GGPMLAHVAMAEGRIAAENIAGG 335 (454)
T ss_pred EEEeeEEEEccCCccCCCCCChhhcCceEC-CCCCEEeCCccccCCCCEEEeeccC-CCcccHhHHHHHHHHHHHHHhCC
Confidence 788999999999999999999999999999 889999999 999999999999998 77889999999999999999985
Q ss_pred CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCC
Q psy3825 93 GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQ 172 (332)
Q Consensus 93 ~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 172 (332)
.....++..+|+++|++|++|+||+||+||++++. ++++....|.... |+
T Consensus 336 ~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~--~~~~~~~~f~~~~---------ra------------------- 385 (454)
T COG1249 336 KRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI--DYKVGKFPFAANG---------RA------------------- 385 (454)
T ss_pred CCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCC--ceEEEEeecccch---------hH-------------------
Confidence 55678999999999999999999999999999844 3666544332211 11
Q ss_pred CCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceE
Q psy3825 173 RNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY 252 (332)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (332)
+ ..+..+||
T Consensus 386 ------------------------------------------------------~-----------------~~~~~~G~ 394 (454)
T COG1249 386 ------------------------------------------------------I-----------------TMGETDGF 394 (454)
T ss_pred ------------------------------------------------------H-----------------hccCCceE
Confidence 0 23568899
Q ss_pred EEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 312 (332)
Q Consensus 253 ~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~ 312 (332)
+|+++| +++++|||+|++|++|+|+|+.+++||++|+|.+++.+++++|||++|.+..+
T Consensus 395 ~Klv~d-~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a 453 (454)
T COG1249 395 VKLVVD-KETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA 453 (454)
T ss_pred EEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHh
Confidence 999999 78999999999999999999999999999999999999999999999999875
No 3
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.6e-40 Score=333.58 Aligned_cols=220 Identities=55% Similarity=0.972 Sum_probs=184.2
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+++++|.||+|+|++||++.|+|+++|+++++++|+|.||+ +||++|+|||+|||+...+++++.|.+||+++|+||+|
T Consensus 264 ~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 264 IEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred eEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 47999999999999999999888999999972248999999 99999999999999844678999999999999999997
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
......++..+|+++|++|++|+|||||+||++.+|.+.+++....|.+....
T Consensus 344 ~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~--------------------------- 396 (484)
T TIGR01438 344 GSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWT--------------------------- 396 (484)
T ss_pred CCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhH---------------------------
Confidence 65445678889999999999999999999999875543455543322211100
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
+|. ..+.+.|
T Consensus 397 -----------------------~~~-----------------------------------------------~~~~~~g 406 (484)
T TIGR01438 397 -----------------------IPS-----------------------------------------------RDNSNKC 406 (484)
T ss_pred -----------------------hhC-----------------------------------------------CCccCCc
Confidence 000 0123679
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR 329 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~ 329 (332)
|+||+++++++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+.+++.++|+..+...++||.
T Consensus 407 ~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~~~~ 484 (484)
T TIGR01438 407 YAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVTKRSGQDILQQGCCG 484 (484)
T ss_pred EEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhhhhcCCCchhcccCC
Confidence 999999635689999999999999999999999999999999999999999999999999998877777777789984
No 4
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=7e-39 Score=319.48 Aligned_cols=203 Identities=38% Similarity=0.685 Sum_probs=173.2
Q ss_pred ecCCe-eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 8 SMDKV-FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 8 ~~~dg-~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
..+++ +++++|.||+++|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|.+||+++
T Consensus 244 ~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~-~~G~i~vd~~~~T~~p~IyAiGD~~-~~~~~~~~A~~~g~~a 321 (450)
T TIGR01421 244 HFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLN-EKGQIIVDEYQNTNVPGIYALGDVV-GKVELTPVAIAAGRKL 321 (450)
T ss_pred EECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEEC-CCCcEEeCCCCcCCCCCEEEEEecC-CCcccHHHHHHHHHHH
Confidence 33445 5799999999999999999888899999998 789999999 999999999999999 7889999999999999
Q ss_pred HHHHhCCC-CcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825 86 AARLYGNG-TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK 164 (332)
Q Consensus 86 A~nI~G~~-~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 164 (332)
|+||+|.. ....++..+|+++|++|++|+||+||+||++.+|.+.+.+....+.+.. |
T Consensus 322 a~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~---------~------------ 380 (450)
T TIGR01421 322 SERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMY---------Y------------ 380 (450)
T ss_pred HHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhH---------H------------
Confidence 99999753 3456788999999999999999999999998755444555432221100 0
Q ss_pred CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825 165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP 244 (332)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (332)
+ +
T Consensus 381 -------------------------------------------------------------------------~----~- 382 (450)
T TIGR01421 381 -------------------------------------------------------------------------A----M- 382 (450)
T ss_pred -------------------------------------------------------------------------H----H-
Confidence 0 0
Q ss_pred cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825 245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 312 (332)
Q Consensus 245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~ 312 (332)
..+.+.||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..+
T Consensus 383 ~~~~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 383 TSEKQKCRMKLVCA-GKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred hcCCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 12467899999999 78999999999999999999999999999999999999999999999998764
No 5
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=5.4e-39 Score=318.95 Aligned_cols=202 Identities=38% Similarity=0.628 Sum_probs=173.5
Q ss_pred ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825 8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA 86 (332)
Q Consensus 8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA 86 (332)
.+.+++++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +|||+|||||+|||+ +..++++.|.+||++||
T Consensus 243 ~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~l~~~A~~~g~~~a 320 (446)
T TIGR01424 243 TLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELN-DAGAIAVDEYSRTSIPSIYAVGDVT-DRINLTPVAIMEATCFA 320 (446)
T ss_pred EEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEEC-CCCcEEeCCCCccCCCCEEEeeccC-CCccchhHHHHHHHHHH
Confidence 344567899999999999999999888899999998 789999999 999999999999999 67889999999999999
Q ss_pred HHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825 87 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT 166 (332)
Q Consensus 87 ~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 166 (332)
+||+|.....+++..+|+++|++|++|+||+||+||++.++. ++.+....|.+. .|
T Consensus 321 ~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~-~~~~~~~~~~~~---------~~-------------- 376 (446)
T TIGR01424 321 NTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTG-DILVYRAGFRPM---------KN-------------- 376 (446)
T ss_pred HHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCC-CEEEEEEecCch---------Hh--------------
Confidence 999986545678889999999999999999999999987433 355543322110 00
Q ss_pred ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825 167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR 246 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (332)
++ ..
T Consensus 377 -------------------------------------------------------------------~~---------~~ 380 (446)
T TIGR01424 377 -------------------------------------------------------------------TF---------SG 380 (446)
T ss_pred -------------------------------------------------------------------Hh---------hc
Confidence 00 12
Q ss_pred CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 312 (332)
Q Consensus 247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~ 312 (332)
+.++||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.++
T Consensus 381 ~~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 381 RQEKTLMKLVVD-EKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred CCCceEEEEEEe-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 456899999999 78999999999999999999999999999999999999999999999998764
No 6
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=7e-39 Score=317.35 Aligned_cols=204 Identities=42% Similarity=0.676 Sum_probs=174.1
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
+.+.+++++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..||+.|
T Consensus 244 v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~g~~a 321 (450)
T PRK06116 244 LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLN-EKGYIIVDEYQNTNVPGIYAVGDVT-GRVELTPVAIAAGRRL 321 (450)
T ss_pred EEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceEC-CCCcEecCCCCCcCCCCEEEEeecC-CCcCcHHHHHHHHHHH
Confidence 3445667899999999999999999888888999998 789999999 999999999999998 6788999999999999
Q ss_pred HHHHhCCCC-cccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825 86 AARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK 164 (332)
Q Consensus 86 A~nI~G~~~-~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 164 (332)
|+||+|... ...++..+|+++|++|++|+||+||+||++.++.+++.+....+.+.. |.
T Consensus 322 a~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~---------~~----------- 381 (450)
T PRK06116 322 SERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMY---------TA----------- 381 (450)
T ss_pred HHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhH---------HH-----------
Confidence 999998554 457888999999999999999999999999844223554432221100 00
Q ss_pred CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825 165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP 244 (332)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (332)
+
T Consensus 382 ------------------------------------------------------------------------------~- 382 (450)
T PRK06116 382 ------------------------------------------------------------------------------L- 382 (450)
T ss_pred ------------------------------------------------------------------------------H-
Confidence 0
Q ss_pred cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825 245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 312 (332)
Q Consensus 245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~ 312 (332)
..+.++||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.++
T Consensus 383 ~~~~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 383 TGHRQPCLMKLVVV-GKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred hcCCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 12467899999999 78999999999999999999999999999999999999999999999999764
No 7
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.8e-38 Score=321.19 Aligned_cols=204 Identities=36% Similarity=0.583 Sum_probs=174.4
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
+.+++++++++|.||+++|++||++.|+++++|++++ ++|+|.||+ +|||+|||||+|||+ +..++++.|.+||++|
T Consensus 279 v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~-~~G~I~Vd~~~~Ts~p~IyAiGDv~-~~~~l~~~A~~qg~~a 356 (499)
T PLN02507 279 VITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELD-KAGAVKVDEYSRTNIPSIWAIGDVT-NRINLTPVALMEGTCF 356 (499)
T ss_pred EEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEEC-CCCcEecCCCCcCCCCCEEEeeEcC-CCCccHHHHHHHHHHH
Confidence 3345667899999999999999999988889999998 789999999 999999999999999 6788999999999999
Q ss_pred HHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCC
Q psy3825 86 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKP 165 (332)
Q Consensus 86 A~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 165 (332)
|+||+|......++..+|+++|++|++|+|||||+||++.+|. ++.+....|.+.. |
T Consensus 357 a~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~-~~~~~~~~~~~~~---------~------------- 413 (499)
T PLN02507 357 AKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKG-DILVFTSSFNPMK---------N------------- 413 (499)
T ss_pred HHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCC-CEEEEEeecCccc---------c-------------
Confidence 9999986555567888999999999999999999999987543 3544332221100 0
Q ss_pred cccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccccc
Q psy3825 166 TEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQ 245 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (332)
+++
T Consensus 414 ----------------------------------------------------------------------~~~------- 416 (499)
T PLN02507 414 ----------------------------------------------------------------------TIS------- 416 (499)
T ss_pred ----------------------------------------------------------------------ccc-------
Confidence 001
Q ss_pred CCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825 246 RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313 (332)
Q Consensus 246 ~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 313 (332)
.+.+.||+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++
T Consensus 417 ~~~~~g~~Kli~d-~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 417 GRQEKTVMKLIVD-AETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMR 483 (499)
T ss_pred cCCCCEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHH
Confidence 1346799999999 789999999999999999999999999999999999999999999999999876
No 8
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.2e-38 Score=322.14 Aligned_cols=206 Identities=30% Similarity=0.505 Sum_probs=174.1
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
+.+++++++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|.+||+++
T Consensus 267 v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~-~~G~I~Vd~~l~Ts~~~IyA~GDv~-~~~~l~~~A~~qG~~a 344 (486)
T TIGR01423 267 VTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT-KKGAIQVDEFSRTNVPNIYAIGDVT-DRVMLTPVAINEGAAF 344 (486)
T ss_pred EEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceEC-CCCCEecCCCCcCCCCCEEEeeecC-CCcccHHHHHHHHHHH
Confidence 3344566899999999999999999988899999998 789999999 999999999999999 7889999999999999
Q ss_pred HHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCC
Q psy3825 86 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKP 165 (332)
Q Consensus 86 A~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 165 (332)
++||+|.....+++..+|+++|+.|++|+|||||+||++. +. ++.+....+.+.. +.
T Consensus 345 a~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~-~~-~~~~~~~~~~~~~-----~~---------------- 401 (486)
T TIGR01423 345 VDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKK-FE-KVAVYESSFTPLM-----HN---------------- 401 (486)
T ss_pred HHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhc-CC-ceEEEEEeeCchh-----hh----------------
Confidence 9999986545567888999999999999999999999986 32 3444332221100 00
Q ss_pred cccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccccc
Q psy3825 166 TEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQ 245 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (332)
.+ .
T Consensus 402 -----------------------------------------------------------------------~~------~ 404 (486)
T TIGR01423 402 -----------------------------------------------------------------------IS------G 404 (486)
T ss_pred -----------------------------------------------------------------------hc------c
Confidence 00 0
Q ss_pred CCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 246 RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 246 ~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
.....||+||++| +++++|||+|++|++|+|+|+.+++||++++|++||.+++++|||++|.+..+...
T Consensus 405 ~~~~~g~~Klv~d-~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~ 473 (486)
T TIGR01423 405 SKYKKFVAKIVTN-HADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTP 473 (486)
T ss_pred CccCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhccc
Confidence 1124799999999 78999999999999999999999999999999999999999999999999998643
No 9
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.6e-38 Score=313.52 Aligned_cols=199 Identities=30% Similarity=0.441 Sum_probs=172.9
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+++++|.||+|+|++||++.|++++.|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.||+|
T Consensus 258 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~-~~g~i~vd~~~~Ts~p~IyAiGD~~-~~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 258 QELEADKVLQAIGFAPRVEGYGLEKTGVALT-DRGAIAIDDYMRTNVPHIYAIGDVT-AKLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred EEEEeCEEEECcCcccCCCCCCchhcCcEEC-CCCcEeeCCCcccCCCCEEEEeecC-CCcccHhHHHHHHHHHHHHHcC
Confidence 5799999999999999999888899999998 789999999 999999999999999 6788999999999999999998
Q ss_pred CCCccc-ccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825 92 NGTTQM-DYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI 170 (332)
Q Consensus 92 ~~~~~~-~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 170 (332)
.....+ ++..+|.++|++|++|+||+||+||+++ |. ++.+....|. +..|.
T Consensus 336 ~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~----------------- 387 (466)
T PRK07818 336 AETLELGDYRMMPRATFCQPQVASFGLTEEQAREE-GY-DVKVAKFPFT---------ANGKA----------------- 387 (466)
T ss_pred CCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhC-CC-cEEEEEEECC---------ccchh-----------------
Confidence 654445 7888999999999999999999999987 53 3554432221 11110
Q ss_pred CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825 171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250 (332)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (332)
. ..+.+.
T Consensus 388 ----------------------------------------------------------------~---------~~~~~~ 394 (466)
T PRK07818 388 ----------------------------------------------------------------H---------GLGDPT 394 (466)
T ss_pred ----------------------------------------------------------------h---------hcCCCC
Confidence 0 124578
Q ss_pred eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.+++..
T Consensus 395 g~~Klv~~-~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 458 (466)
T PRK07818 395 GFVKLVAD-AKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHG 458 (466)
T ss_pred eEEEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHH
Confidence 99999999 78999999999999999999999999999999999999999999999999988874
No 10
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=3.3e-38 Score=314.81 Aligned_cols=202 Identities=28% Similarity=0.399 Sum_probs=172.5
Q ss_pred cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825 9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA 87 (332)
Q Consensus 9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~ 87 (332)
..+++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ ||||+|+|||+|||+ +.+++++.|.+||+++|+
T Consensus 246 ~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~l~~~A~~~g~~~a~ 323 (452)
T TIGR03452 246 LDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVD-EDGRIKVDEYGRTSARGVWALGDVS-SPYQLKHVANAEARVVKH 323 (452)
T ss_pred EcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeEC-CCCcEeeCCCcccCCCCEEEeeccc-CcccChhHHHHHHHHHHH
Confidence 34566899999999999999999988888999998 789999999 999999999999999 678999999999999999
Q ss_pred HHhCCCC-cccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825 88 RLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT 166 (332)
Q Consensus 88 nI~G~~~-~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 166 (332)
||+|... ...++..+|+++|++|++|+||+||+||++. |. ++++....|. +..|+
T Consensus 324 ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~-g~-~~~~~~~~~~---------~~~~~------------- 379 (452)
T TIGR03452 324 NLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREA-GH-DITVKIQNYG---------DVAYG------------- 379 (452)
T ss_pred HhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhc-CC-CeEEEEecCC---------chhhH-------------
Confidence 9998643 3577888999999999999999999999987 53 3444332211 10000
Q ss_pred ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825 167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR 246 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (332)
+ ..
T Consensus 380 --------------------------------------------------------------------~---------~~ 382 (452)
T TIGR03452 380 --------------------------------------------------------------------W---------AM 382 (452)
T ss_pred --------------------------------------------------------------------h---------hc
Confidence 0 12
Q ss_pred CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHh
Q psy3825 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTI 314 (332)
Q Consensus 247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~ 314 (332)
+.+.||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.++ +++|||++|.+..++.
T Consensus 383 ~~~~g~~Klv~d-~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~ 450 (452)
T TIGR03452 383 EDTTGFCKLIAD-RDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALL 450 (452)
T ss_pred CCCCeEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHh
Confidence 456799999999 789999999999999999999999999999999999996 8899999999988765
No 11
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-38 Score=328.39 Aligned_cols=222 Identities=23% Similarity=0.379 Sum_probs=178.7
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCC------CCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTN------IPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTS------vpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
+++++|.||||+|++||++.|+|+++|++++ +|+|.||+ |||+ +|||||+|||+ +.+++++.|.+||++|
T Consensus 412 ~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~--~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~-g~~~La~~A~~qg~~a 488 (659)
T PTZ00153 412 KETYVDSCLVATGRKPNTNNLGLDKLKIQMK--RGFVSVDEHLRVLREDQEVYDNIFCIGDAN-GKQMLAHTASHQALKV 488 (659)
T ss_pred eEEEcCEEEEEECcccCCccCCchhcCCccc--CCEEeECCCCCcCCCCCCCCCCEEEEEecC-CCccCHHHHHHHHHHH
Confidence 4799999999999999999998899999886 58999999 9997 69999999998 7889999999999999
Q ss_pred HHHHhCCC------------CcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccch
Q psy3825 86 AARLYGNG------------TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRC 153 (332)
Q Consensus 86 A~nI~G~~------------~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 153 (332)
++||+|.. ...+++..+|+++|++|++|+|||||+||++.+..+++.+....|+.....+..
T Consensus 489 a~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~------ 562 (659)
T PTZ00153 489 VDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCE------ 562 (659)
T ss_pred HHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhc------
Confidence 99999852 345788899999999999999999999999984334566665555432211100
Q ss_pred hhhhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhc
Q psy3825 154 YLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYH 233 (332)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (332)
+ ++++|.|-. |
T Consensus 563 ------------~-------------------------------------------------~~~~p~~~~--------~ 573 (659)
T PTZ00153 563 ------------N-------------------------------------------------NISFPNNSK--------N 573 (659)
T ss_pred ------------c-------------------------------------------------ccccccccc--------c
Confidence 0 122222210 1
Q ss_pred ccCCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825 234 AYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313 (332)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 313 (332)
..|.|+.+. ..+.++||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++
T Consensus 574 ~~y~~g~~~--~~~~~~G~vKli~d-~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~ 650 (659)
T PTZ00153 574 NSYNKGKYN--TVDNTEGMVKIVYL-KDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAF 650 (659)
T ss_pred ccccccccc--cccCCceEEEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHH
Confidence 122232211 12347899999999 789999999999999999999999999999999999999999999999999887
Q ss_pred hh
Q psy3825 314 IT 315 (332)
Q Consensus 314 ~~ 315 (332)
..
T Consensus 651 ~~ 652 (659)
T PTZ00153 651 KA 652 (659)
T ss_pred HH
Confidence 64
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=7.9e-38 Score=311.23 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=174.6
Q ss_pred CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI 89 (332)
++.++++|.||+|+|++||++.|++++.|++++ ++|+|.||+ |||++|||||+|||+ +.+.+++.|..||++||+||
T Consensus 254 ~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~-~~G~i~vd~~l~t~~~~IyAiGD~~-~~~~~~~~A~~~g~~aa~ni 331 (463)
T PRK06370 254 GAPEITGSHILVAVGRVPNTDDLGLEAAGVETD-ARGYIKVDDQLRTTNPGIYAAGDCN-GRGAFTHTAYNDARIVAANL 331 (463)
T ss_pred CceEEEeCEEEECcCCCcCCCCcCchhhCceEC-CCCcEeECcCCcCCCCCEEEeeecC-CCcccHHHHHHHHHHHHHHH
Confidence 456799999999999999999777888999998 789999999 999999999999998 67889999999999999999
Q ss_pred hCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccc
Q psy3825 90 YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFF 169 (332)
Q Consensus 90 ~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 169 (332)
++.....+++..+|+++|++|++|+||+||+||++. |. ++.+.+..|. +..|.
T Consensus 332 ~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~-g~-~~~~~~~~~~---------~~~~~---------------- 384 (463)
T PRK06370 332 LDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKS-GR-RVLVGTRPMT---------RVGRA---------------- 384 (463)
T ss_pred hCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHc-CC-CeEEEEEecC---------cchhH----------------
Confidence 986445677888999999999999999999999987 53 3555433221 10010
Q ss_pred cCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCc
Q psy3825 170 IPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQ 249 (332)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (332)
+ ..+.+
T Consensus 385 -----------------------------------------------------------------~---------~~~~~ 390 (463)
T PRK06370 385 -----------------------------------------------------------------V---------EKGET 390 (463)
T ss_pred -----------------------------------------------------------------H---------hcCCC
Confidence 0 12457
Q ss_pred ceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhh
Q psy3825 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITK 316 (332)
Q Consensus 250 ~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~ 316 (332)
+||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.+++...
T Consensus 391 ~g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~ 456 (463)
T PRK06370 391 QGFMKVVVD-ADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQAL 456 (463)
T ss_pred CEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhh
Confidence 899999999 789999999999999999999999999999999999999999999999999998753
No 13
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=8e-38 Score=312.24 Aligned_cols=205 Identities=26% Similarity=0.380 Sum_probs=174.3
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
+.+++++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ +|||+|||||+|||+ +.+++++.|.+||+++
T Consensus 241 v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~-~~G~i~Vd~~~~Ts~p~IyA~GD~~-~~~~l~~~A~~~g~~~ 318 (451)
T PRK07846 241 LRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVD-EDGRVVVDEYQRTSAEGVFALGDVS-SPYQLKHVANHEARVV 318 (451)
T ss_pred EEECCCcEeecCEEEEEECCccCccccCchhcCceEC-CCCcEeECCCcccCCCCEEEEeecC-CCccChhHHHHHHHHH
Confidence 3445677899999999999999999988889999998 789999999 999999999999999 6788999999999999
Q ss_pred HHHHhCCC-CcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825 86 AARLYGNG-TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK 164 (332)
Q Consensus 86 A~nI~G~~-~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 164 (332)
++||++.. ....++..+|+++|++|++|+||+||+||++. |. ++.+....|+ +..|.
T Consensus 319 a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~----------- 376 (451)
T PRK07846 319 QHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAA-GL-DITVKVQNYG---------DVAYG----------- 376 (451)
T ss_pred HHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhc-CC-CEEEEEEecC---------cchhh-----------
Confidence 99999753 23567888999999999999999999999987 54 3555433221 10010
Q ss_pred CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825 165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP 244 (332)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (332)
+
T Consensus 377 -----------------------------------------------------------------------~-------- 377 (451)
T PRK07846 377 -----------------------------------------------------------------------W-------- 377 (451)
T ss_pred -----------------------------------------------------------------------h--------
Confidence 0
Q ss_pred cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHhh
Q psy3825 245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~~ 315 (332)
..+.++||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.++ +++|||++|.+..++..
T Consensus 378 ~~~~~~g~~Kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~ 448 (451)
T PRK07846 378 AMEDTTGFVKLIAD-RDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLG 448 (451)
T ss_pred hCCCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHh
Confidence 12456799999999 789999999999999999999999999999999999986 58999999999888763
No 14
>PLN02546 glutathione reductase
Probab=100.00 E-value=6.1e-38 Score=322.44 Aligned_cols=203 Identities=40% Similarity=0.691 Sum_probs=173.2
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
++++.+.+|.||+++|++||+++|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..||+++|.|
T Consensus 332 ~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d-~~G~I~VD~~l~Ts~p~IYAaGDv~-~~~~l~~~A~~~g~~~a~~ 409 (558)
T PLN02546 332 NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMD-KNGAIEVDEYSRTSVPSIWAVGDVT-DRINLTPVALMEGGALAKT 409 (558)
T ss_pred CCeEEEecCEEEEeeccccCCCcCChhhcCCcCC-CCCcEeECCCceeCCCCEEEeeccC-CCcccHHHHHHHHHHHHHH
Confidence 3444455899999999999999888899999998 789999999 999999999999999 6788999999999999999
Q ss_pred HhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825 89 LYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF 168 (332)
Q Consensus 89 I~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 168 (332)
|+|......++..+|+++|++|++|+|||||+||++.++ ++++....|.+.. |
T Consensus 410 i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~--~~~~~~~~~~~~~---------~---------------- 462 (558)
T PLN02546 410 LFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANFRPLK---------A---------------- 462 (558)
T ss_pred HcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCC--CeEEEEEecccch---------h----------------
Confidence 998654456788999999999999999999999999743 3565443322110 0
Q ss_pred ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825 169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248 (332)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (332)
++ ..+.
T Consensus 463 ------------------------------------------------------------------~~--------~~~~ 468 (558)
T PLN02546 463 ------------------------------------------------------------------TL--------SGLP 468 (558)
T ss_pred ------------------------------------------------------------------hh--------hCCC
Confidence 00 1135
Q ss_pred cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH-hhh
Q psy3825 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT-ITK 316 (332)
Q Consensus 249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~-~~~ 316 (332)
++||+||++| +++++|||+|++|++|.|+||.+++||++|+|++||.+++++|||++|.|..+. .++
T Consensus 469 ~~g~~Klv~d-~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~~~~~ 536 (558)
T PLN02546 469 DRVFMKLIVC-AKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTR 536 (558)
T ss_pred CcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHhhhcc
Confidence 6899999999 789999999999999999999999999999999999999999999999999887 443
No 15
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=311.51 Aligned_cols=204 Identities=24% Similarity=0.338 Sum_probs=175.2
Q ss_pred ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825 8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA 86 (332)
Q Consensus 8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA 86 (332)
.+.+++++++|.||+++|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..||++|+
T Consensus 254 ~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~-~~G~i~Vd~~~~Ts~~~IyA~GD~~-~~~~l~~~A~~~g~~aa 331 (466)
T PRK07845 254 TLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELT-PSGHITVDRVSRTSVPGIYAAGDCT-GVLPLASVAAMQGRIAM 331 (466)
T ss_pred EECCCcEEEecEEEEeecCCcCCCCCCchhhCceEC-CCCcEeECCCcccCCCCEEEEeecc-CCccchhHHHHHHHHHH
Confidence 334567899999999999999999888899999998 789999999 999999999999999 77899999999999999
Q ss_pred HHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825 87 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT 166 (332)
Q Consensus 87 ~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 166 (332)
.|++|....+.++..+|+++|++|++|+||+||++|++. |. ++++....+ .+..|.
T Consensus 332 ~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~---------~~~~~~------------- 387 (466)
T PRK07845 332 YHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSG-EV-PARTVMLPL---------ATNPRA------------- 387 (466)
T ss_pred HHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhC-CC-ceEEEEEec---------ccCchh-------------
Confidence 999986545677889999999999999999999999986 43 244432211 110010
Q ss_pred ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825 167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR 246 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (332)
. ..
T Consensus 388 --------------------------------------------------------------------~---------~~ 390 (466)
T PRK07845 388 --------------------------------------------------------------------K---------MS 390 (466)
T ss_pred --------------------------------------------------------------------h---------hc
Confidence 0 12
Q ss_pred CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
+.++||+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus 391 ~~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 458 (466)
T PRK07845 391 GLRDGFVKLFCR-PGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARR 458 (466)
T ss_pred CCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHH
Confidence 457899999999 78999999999999999999999999999999999999999999999999888764
No 16
>KOG1335|consensus
Probab=100.00 E-value=1.7e-38 Score=311.91 Aligned_cols=205 Identities=29% Similarity=0.487 Sum_probs=180.9
Q ss_pred ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825 8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA 86 (332)
Q Consensus 8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA 86 (332)
..++.++++||++|+++||+|-+++|+|++.|++.| ++|+|.||+ ++|.+||||+||||+ .+|||+|.|..||..+.
T Consensus 294 k~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D-~r~rv~v~~~f~t~vP~i~~IGDv~-~gpMLAhkAeeegI~~V 371 (506)
T KOG1335|consen 294 KTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELD-KRGRVIVNTRFQTKVPHIYAIGDVT-LGPMLAHKAEEEGIAAV 371 (506)
T ss_pred CCCceeEEEeeEEEEEccCcccccCCChhhcccccc-cccceeccccccccCCceEEecccC-Ccchhhhhhhhhchhhe
Confidence 345667899999999999999999999999999999 899999999 999999999999999 89999999999999999
Q ss_pred HHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825 87 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT 166 (332)
Q Consensus 87 ~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 166 (332)
+.|.|.. ...+|..+|.++|+.||+||||+||+++++. |- .+.+....|+.+. |+
T Consensus 372 E~i~g~~-~hv~ynciP~v~ythPEvawVG~TEeqlkee-gi-~y~vgkfpF~aNs---------Ra------------- 426 (506)
T KOG1335|consen 372 EGIAGGH-GHVDYNCIPSVVYTHPEVAWVGKTEEQLKEE-GI-KYKVGKFPFSANS---------RA------------- 426 (506)
T ss_pred eeecccC-cccccCCCCceeecccceeeeccchhhHHhc-Cc-ceEeeeccccccc---------hh-------------
Confidence 9998754 3578888999999999999999999999997 43 3555543332111 11
Q ss_pred ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825 167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR 246 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (332)
| ..
T Consensus 427 --------------k---------------------------------------------------------------tn 429 (506)
T KOG1335|consen 427 --------------K---------------------------------------------------------------TN 429 (506)
T ss_pred --------------h---------------------------------------------------------------cc
Confidence 0 24
Q ss_pred CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhc
Q psy3825 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKR 317 (332)
Q Consensus 247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~ 317 (332)
++.+||+|+++| ++++||||+||+|++|+|||++.++||..|.+.+|+++..++|||+||+|.++....-
T Consensus 430 ~d~eg~vKvl~d-~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~ 499 (506)
T KOG1335|consen 430 NDTEGFVKVLAD-KETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAY 499 (506)
T ss_pred CCccceeEEEec-CCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhh
Confidence 678999999999 8999999999999999999999999999999999999999999999999999987643
No 17
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=4.9e-38 Score=317.83 Aligned_cols=234 Identities=40% Similarity=0.661 Sum_probs=183.3
Q ss_pred ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCCCCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825 8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA 87 (332)
Q Consensus 8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDelqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~ 87 (332)
.+.+++++++|.||+++|++||+++|+++++|++++ ++|+|.+++.+|++|+|||+|||+.+.+++++.|.+||+++|+
T Consensus 258 ~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~-~~G~ii~~~~~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ 336 (499)
T PTZ00052 258 LFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVN-KSNKIIAPNDCTNIPNIFAVGDVVEGRPELTPVAIKAGILLAR 336 (499)
T ss_pred EECCCCEEEcCEEEEeeCCCCCccccCchhcCcEEC-CCCCEeeCCCcCCCCCEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 344567799999999999999999988889999998 7887655544899999999999985567899999999999999
Q ss_pred HHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcc
Q psy3825 88 RLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTE 167 (332)
Q Consensus 88 nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 167 (332)
||+|......++..+|+++|++|++|+|||||+||++.+|.+.+++....|.........+.
T Consensus 337 ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 398 (499)
T PTZ00052 337 RLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHRE------------------ 398 (499)
T ss_pred HHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccc------------------
Confidence 99986555678889999999999999999999999988554456665444432111000000
Q ss_pred cccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCC
Q psy3825 168 FFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRN 247 (332)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (332)
++ ....+.++. ...
T Consensus 399 -~~---------------------------------------------------------------~~~~~~~~~--~~~ 412 (499)
T PTZ00052 399 -KH---------------------------------------------------------------ERARKDEYD--FDV 412 (499)
T ss_pred -cc---------------------------------------------------------------ccccccccc--ccc
Confidence 00 000000000 012
Q ss_pred CcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCc
Q psy3825 248 PQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQS 326 (332)
Q Consensus 248 ~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~ 326 (332)
.++||+||+++++++++|||+|++|++|+|+|+.+++||++++|++||.+++++|||++|.+..+..+.|+++....-.
T Consensus 413 ~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~ 491 (499)
T PTZ00052 413 SSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNLSVTRRSGESFAAKG 491 (499)
T ss_pred cCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEEEeeccCCCChhhcc
Confidence 4689999999932489999999999999999999999999999999999999999999999999998888877554433
No 18
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-37 Score=307.41 Aligned_cols=198 Identities=26% Similarity=0.385 Sum_probs=170.2
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
.++++|.|++|+|++||++.|.++++|++++ ++|+|.||+ ||||+|||||+|||+ +.+++++.|..||+++++||+|
T Consensus 239 g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 239 AQLAVDALLIASGRQPATASLHPENAGIAVN-ERGAIVVDKYLHTTADNIWAMGDVT-GGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred CeEEeCEEEEeecCCcCCCCcCchhcCcEEC-CCCcEEECCCcccCCCCEEEeeecC-CCccchhHHHHHHHHHHHHHcC
Confidence 3589999999999999999887888999998 789999999 999999999999999 7889999999999999999998
Q ss_pred C-CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825 92 N-GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI 170 (332)
Q Consensus 92 ~-~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 170 (332)
. .....++..+|+++|++|++|+||+||+||++. |. ++.+....++ +..|.
T Consensus 317 ~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~----------------- 368 (441)
T PRK08010 317 EGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARES-GA-DIQVVTLPVA---------AIPRA----------------- 368 (441)
T ss_pred CCCcccCccCCCCEEEECCCCceeeeCCHHHHHHc-CC-CeEEEEEecC---------cChhh-----------------
Confidence 5 223457788999999999999999999999987 54 3555433221 11110
Q ss_pred CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825 171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250 (332)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (332)
. ..+...
T Consensus 369 ----------------------------------------------------------------~---------~~~~~~ 375 (441)
T PRK08010 369 ----------------------------------------------------------------R---------VMNDTR 375 (441)
T ss_pred ----------------------------------------------------------------h---------hcCCCc
Confidence 0 123567
Q ss_pred eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHh
Q psy3825 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 314 (332)
Q Consensus 251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 314 (332)
||+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+.+++.
T Consensus 376 g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 376 GVLKAIVD-NKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred eEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 99999999 7899999999999999999999999999999999999999999999999988864
No 19
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.2e-37 Score=312.59 Aligned_cols=209 Identities=26% Similarity=0.363 Sum_probs=176.2
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
.++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ ||||+|||||+|||+ +.+.+++.|..||++||.||+|
T Consensus 268 g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~-~~G~i~Vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 268 GELRAEKLLISTGRHANTHDLNLEAVGVTTD-TSGAIVVNPAMETSAPDIYAAGDCS-DLPQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred CeEEeCEEEEccCCCCCccCCCchhhCceec-CCCCEEECCCeecCCCCEEEeeecC-CcchhhhHHHHHHHHHHHHHcC
Confidence 3589999999999999999888888999998 789999999 999999999999999 7788999999999999999998
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
.. ..+++..+|+++|++|++|+||+||+||++. |. ++.+....+ .+..|
T Consensus 346 ~~-~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~-g~-~~~~~~~~~---------~~~~~------------------- 394 (479)
T PRK14727 346 GN-ATLDLSAMPAVIFTDPQVATVGLSEAKAHLS-GI-ETISRVLTM---------ENVPR------------------- 394 (479)
T ss_pred CC-cccccccCCcEEEecCceeeeeCCHHHHHHc-CC-ceEEEEEEc---------ccCch-------------------
Confidence 64 4577888999999999999999999999987 53 244332211 11001
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
+++ .+.++|
T Consensus 395 ----------------------------------------------------------------~~~-------~~~~~g 403 (479)
T PRK14727 395 ----------------------------------------------------------------ALA-------NFETDG 403 (479)
T ss_pred ----------------------------------------------------------------hhh-------cCCCCe
Confidence 001 235789
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCccc
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 328 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~ 328 (332)
++||++| +++++|||+|++|++|.|+|+.+++||+.|+|++||.+++++|||++|.+..++.... .+++..+||
T Consensus 404 ~~Kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~--~~~~~~~~~ 477 (479)
T PRK14727 404 FIKLVAE-EGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQTFR--KDVKELSCC 477 (479)
T ss_pred EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHhhh--hcchhhhhh
Confidence 9999999 7899999999999999999999999999999999999999999999999999886432 234556776
No 20
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.5e-37 Score=307.98 Aligned_cols=201 Identities=25% Similarity=0.347 Sum_probs=173.5
Q ss_pred cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825 9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA 87 (332)
Q Consensus 9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~ 87 (332)
.++++++++|.||+|+|++||++.++++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||++||.
T Consensus 253 ~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~IyAiGD~~-~~~~~~~~A~~~g~~aa~ 330 (461)
T PRK05249 253 LKSGKKIKADCLLYANGRTGNTDGLNLENAGLEAD-SRGQLKVNENYQTAVPHIYAVGDVI-GFPSLASASMDQGRIAAQ 330 (461)
T ss_pred ECCCCEEEeCEEEEeecCCccccCCCchhhCcEec-CCCcEeeCCCcccCCCCEEEeeecC-CCcccHhHHHHHHHHHHH
Confidence 34566899999999999999999888899999998 789999999 999999999999999 778899999999999999
Q ss_pred HHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcc
Q psy3825 88 RLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTE 167 (332)
Q Consensus 88 nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 167 (332)
||+|.. ...++..+|+++|+.|++|+||+||+||++. |. ++++....|... .|.
T Consensus 331 ~i~g~~-~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~-g~-~~~~~~~~~~~~---------~~~-------------- 384 (461)
T PRK05249 331 HAVGEA-TAHLIEDIPTGIYTIPEISSVGKTEQELTAA-KV-PYEVGRARFKEL---------ARA-------------- 384 (461)
T ss_pred HHcCCC-cccccCCCCeEEECCCcceEecCCHHHHHHc-CC-CeEEEEEccccc---------cce--------------
Confidence 999754 3467888999999999999999999999987 43 355543322110 010
Q ss_pred cccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCC
Q psy3825 168 FFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRN 247 (332)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (332)
. ..+
T Consensus 385 -------------------------------------------------------------------~---------~~~ 388 (461)
T PRK05249 385 -------------------------------------------------------------------Q---------IAG 388 (461)
T ss_pred -------------------------------------------------------------------e---------ecC
Confidence 0 124
Q ss_pred CcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHh
Q psy3825 248 PQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 314 (332)
Q Consensus 248 ~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 314 (332)
.+.||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++.
T Consensus 389 ~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 454 (461)
T PRK05249 389 DNVGMLKILFH-RETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAAL 454 (461)
T ss_pred CCCcEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence 57899999999 7899999999999999999999999999999999999999999999999998875
No 21
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.8e-37 Score=307.32 Aligned_cols=202 Identities=30% Similarity=0.429 Sum_probs=173.9
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
++++++++|.||+|+|++||++.|.++++|++++ ++|+|.||+ +|||+|+|||+|||+ +.+++++.|..||++||.|
T Consensus 250 ~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~-~~g~i~vd~~~~ts~~~IyA~GD~~-~~~~~~~~A~~qg~~aa~~ 327 (460)
T PRK06292 250 GKTETIEADYVLVATGRRPNTDGLGLENTGIELD-ERGRPVVDEHTQTSVPGIYAAGDVN-GKPPLLHEAADEGRIAAEN 327 (460)
T ss_pred CceEEEEeCEEEEccCCccCCCCCCcHhhCCEec-CCCcEeECCCcccCCCCEEEEEecC-CCccchhHHHHHHHHHHHH
Confidence 4456799999999999999999888889999998 789999999 999999999999999 6788999999999999999
Q ss_pred HhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825 89 LYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF 168 (332)
Q Consensus 89 I~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 168 (332)
|++......++..+|+++|++|++|+||+||+||++. |. ++++....++ +..|.
T Consensus 328 i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~-g~-~~~~~~~~~~---------~~~~~--------------- 381 (460)
T PRK06292 328 AAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAA-GI-DYVVGEVPFE---------AQGRA--------------- 381 (460)
T ss_pred hcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhc-CC-CeEEEEEecc---------cchHH---------------
Confidence 9985334567888999999999999999999999986 53 3554433221 11111
Q ss_pred ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825 169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248 (332)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (332)
. ..+.
T Consensus 382 ------------------------------------------------------------------~---------~~~~ 386 (460)
T PRK06292 382 ------------------------------------------------------------------R---------VMGK 386 (460)
T ss_pred ------------------------------------------------------------------H---------hcCC
Confidence 0 0145
Q ss_pred cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
+.||+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus 387 ~~g~~klv~d-~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 452 (460)
T PRK06292 387 NDGFVKVYAD-KKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRD 452 (460)
T ss_pred CCeEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHH
Confidence 7899999999 78999999999999999999999999999999999999999999999999998764
No 22
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-37 Score=310.94 Aligned_cols=198 Identities=29% Similarity=0.430 Sum_probs=172.4
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+++++|.||+|+|++||+++|.++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|.+||++||.||+|
T Consensus 259 ~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~-~~G~I~Vd~~~~t~~p~VyAiGDv~-~~~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 259 EPQRYDAVLVAVGRVPNGKLLDAEKAGVEVD-ERGFIRVDKQCRTNVPHIFAIGDIV-GQPMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred eEEEeCEEEEeecccccCCccChhhcCceEC-CCCcEeeCCCcccCCCCEEEehhhc-CCcccHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999887889999998 789999999 999999999999998 7788999999999999999998
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
.. ..+++..+|+++|++|++|+||+||+||++. |. ++.+....|. +..|.
T Consensus 337 ~~-~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~-g~-~~~~~~~~~~---------~~~~~------------------ 386 (471)
T PRK06467 337 KK-HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEE-GI-EYETATFPWA---------ASGRA------------------ 386 (471)
T ss_pred CC-CCCCCCCCCeEEECCCceeEEECCHHHHHhc-CC-CeEEEEEecC---------cchhh------------------
Confidence 54 4578888999999999999999999999987 53 3554432221 10010
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
. ..+.++|
T Consensus 387 ---------------------------------------------------------------~---------~~~~~~g 394 (471)
T PRK06467 387 ---------------------------------------------------------------I---------ASDCADG 394 (471)
T ss_pred ---------------------------------------------------------------h---------hCCCCce
Confidence 0 1246789
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
|+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++..
T Consensus 395 ~~kli~d-~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~ 457 (471)
T PRK06467 395 MTKLIFD-KETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEA 457 (471)
T ss_pred EEEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHh
Confidence 9999999 78999999999999999999999999999999999999999999999999988764
No 23
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2.6e-37 Score=307.14 Aligned_cols=212 Identities=32% Similarity=0.441 Sum_probs=178.6
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
++++++|.||+|+|++||++.|++++.|++++ ++|+|.||+ |||++|||||+|||+ +.+++++.|..||++||.||+
T Consensus 250 ~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~Ts~~~VyAiGD~~-~~~~~~~~A~~~g~~aa~ni~ 327 (463)
T TIGR02053 250 QGEVEADELLVATGRRPNTDGLGLEKAGVKLD-ERGGILVDETLRTSNPGIYAAGDVT-GGLQLEYVAAKEGVVAAENAL 327 (463)
T ss_pred ceEEEeCEEEEeECCCcCCCCCCccccCCEEC-CCCcEeECCCccCCCCCEEEeeecC-CCcccHhHHHHHHHHHHHHhc
Confidence 46799999999999999999778889999998 789999999 999999999999999 678899999999999999999
Q ss_pred CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825 91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI 170 (332)
Q Consensus 91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 170 (332)
+.....+++..+|.++|++|++|+||+||++|+++ |. ++.+....+. +.+|.
T Consensus 328 ~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~----------------- 379 (463)
T TIGR02053 328 GGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKA-GI-ECDCRTLPLT---------NVPRA----------------- 379 (463)
T ss_pred CCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhc-CC-CeEEEEEecc---------cchHH-----------------
Confidence 86344577788999999999999999999999987 53 3444432221 11110
Q ss_pred CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825 171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250 (332)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (332)
. ..+.+.
T Consensus 380 ----------------------------------------------------------------~---------~~~~~~ 386 (463)
T TIGR02053 380 ----------------------------------------------------------------R---------INRDTR 386 (463)
T ss_pred ----------------------------------------------------------------H---------hcCCCc
Confidence 0 124568
Q ss_pred eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR 329 (332)
Q Consensus 251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~ 329 (332)
||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++.... .++....||.
T Consensus 387 g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~~~--~~~~~~~~~~ 462 (463)
T TIGR02053 387 GFIKLVAE-PGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQTFY--RDVSKLSCCA 462 (463)
T ss_pred EEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh--cccccccccc
Confidence 99999999 7899999999999999999999999999999999999999999999999999887522 2356677763
No 24
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=2e-37 Score=309.48 Aligned_cols=209 Identities=25% Similarity=0.373 Sum_probs=176.1
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
.++++|.||+|+|++||+++++++++|++. ++|+|.||+ +||++|+|||+|||+ +.+.+++.|..||++||.||+|
T Consensus 258 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~--~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 258 GTLRAEQLLVATGRTPNTENLNLESIGVET--ERGAIRIDEHLQTTVSGIYAAGDCT-DQPQFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred CEEEeCEEEEccCCCCCcCCCCchhcCccc--CCCeEeeCCCcccCCCCEEEEeecC-CCcccHHHHHHHHHHHHHHhcC
Confidence 369999999999999999988778889886 478999999 999999999999999 7889999999999999999998
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
.. ..+++..+|.++|++|++|+||+||+||++. |. ++.+....+. ...|
T Consensus 335 ~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~------------------- 383 (468)
T PRK14694 335 GD-ASLDLSAMPEVIFTDPQVATVGLSEAEAQAQ-GY-DTDSRTLDLE---------NVPR------------------- 383 (468)
T ss_pred CC-cccccCCCCeEEECCCCeEEeeCCHHHHHHc-CC-ceEEEEEecc---------cchh-------------------
Confidence 64 4577888999999999999999999999987 43 3444332221 1001
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
++ ..+.+.|
T Consensus 384 ----------------------------------------------------------------~~-------~~~~~~g 392 (468)
T PRK14694 384 ----------------------------------------------------------------AL-------VNFDTGG 392 (468)
T ss_pred ----------------------------------------------------------------hh-------hcCCCce
Confidence 00 1245789
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR 329 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~ 329 (332)
|+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..+..... .++..++||.
T Consensus 393 ~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~--~~~~~~~~~~ 467 (468)
T PRK14694 393 FIKMVAE-RGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQTFT--KDVKQLSCCA 467 (468)
T ss_pred EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHhhh--cccchhhhhc
Confidence 9999999 7899999999999999999999999999999999999999999999999998877532 2245778874
No 25
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-37 Score=308.58 Aligned_cols=199 Identities=24% Similarity=0.416 Sum_probs=171.4
Q ss_pred CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI 89 (332)
+++++++|.||+|+|++||++.|+++++|++++ ++| +.||+ +|||+|+|||+|||+ +.+++++.|.+||+++|+||
T Consensus 259 ~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~-~~G-~~vd~~~~Ts~~~IyA~GD~~-~~~~la~~A~~~g~~aa~~i 335 (466)
T PRK06115 259 AAETLQADYVLVAIGRRPYTQGLGLETVGLETD-KRG-MLANDHHRTSVPGVWVIGDVT-SGPMLAHKAEDEAVACIERI 335 (466)
T ss_pred ceeEEEeCEEEEccCCccccccCCcccccceeC-CCC-EEECCCeecCCCCEEEeeecC-CCcccHHHHHHHHHHHHHHH
Confidence 456799999999999999999888888999997 667 77899 999999999999999 67899999999999999999
Q ss_pred hCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccc
Q psy3825 90 YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFF 169 (332)
Q Consensus 90 ~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 169 (332)
+|.. ...++..+|.++|++|++|+||+||+||++. |. ++.+....|+.. .|.
T Consensus 336 ~~~~-~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~-g~-~~~~~~~~~~~~---------~~~---------------- 387 (466)
T PRK06115 336 AGKA-GEVNYGLIPGVIYTRPEVATVGKTEEQLKAE-GR-AYKVGKFPFTAN---------SRA---------------- 387 (466)
T ss_pred cCCC-CCCCCCCCCeEEECCcccEEeeCCHHHHHHC-CC-CEEEEEEecccC---------hhh----------------
Confidence 9854 3478889999999999999999999999987 43 355544322211 110
Q ss_pred cCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCc
Q psy3825 170 IPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQ 249 (332)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (332)
.+ .+.+
T Consensus 388 -----------------------------------------------------------------~~---------~~~~ 393 (466)
T PRK06115 388 -----------------------------------------------------------------KI---------NHET 393 (466)
T ss_pred -----------------------------------------------------------------Hh---------cCCC
Confidence 00 1346
Q ss_pred ceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 250 ~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
+||+||++| +++++|||+|++|++|+|+|+.+++||+.++|++||.+++++|||++|.+..++..
T Consensus 394 ~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~ 458 (466)
T PRK06115 394 EGFAKILAD-ARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMN 458 (466)
T ss_pred ceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHH
Confidence 799999999 78999999999999999999999999999999999999999999999999988864
No 26
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.8e-37 Score=311.52 Aligned_cols=209 Identities=29% Similarity=0.412 Sum_probs=176.6
Q ss_pred EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCC
Q psy3825 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGN 92 (332)
Q Consensus 14 ~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~ 92 (332)
++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ ||||+|||||+|||+ +.+++++.|..||++||.||+|.
T Consensus 351 ~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~-~~g~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 351 ELRADKLLVATGRAPNTRSLALDAAGVTVN-AQGAIVIDQGMRTSVPHIYAAGDCT-DQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred eEEeCEEEEccCCCcCCCCcCchhcCceEC-CCCCEeECCCcccCCCCEEEeeecC-CCccchhHHHHHHHHHHHHHcCC
Confidence 699999999999999999888889999998 789999999 999999999999999 77899999999999999999986
Q ss_pred CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCC
Q psy3825 93 GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQ 172 (332)
Q Consensus 93 ~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 172 (332)
. ..+++..+|.++|++|++|+||+||++|++. |. ++.+....+. +..|
T Consensus 429 ~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~-------------------- 476 (561)
T PRK13748 429 D-AALDLTAMPAVVFTDPQVATVGYSEAEAHHD-GI-ETDSRTLTLD---------NVPR-------------------- 476 (561)
T ss_pred C-cccCCCCCCeEEEccCCceeeeCCHHHHHHc-CC-CeEEEEEecc---------cCch--------------------
Confidence 4 4577888999999999999999999999987 53 2444332211 1000
Q ss_pred CCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceE
Q psy3825 173 RNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY 252 (332)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (332)
+++ .+.+.||
T Consensus 477 ---------------------------------------------------------------~~~-------~~~~~g~ 486 (561)
T PRK13748 477 ---------------------------------------------------------------ALA-------NFDTRGF 486 (561)
T ss_pred ---------------------------------------------------------------hhh-------cCCCCeE
Confidence 011 2356899
Q ss_pred EEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR 329 (332)
Q Consensus 253 ~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~ 329 (332)
+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++... ..+...++||.
T Consensus 487 ~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~--~~~~~~~~~~~ 560 (561)
T PRK13748 487 IKLVIE-EGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTF--NKDVKQLSCCA 560 (561)
T ss_pred EEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHHh--hccchhhhhhc
Confidence 999999 789999999999999999999999999999999999999999999999999988642 23344567773
No 27
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=5e-37 Score=315.94 Aligned_cols=206 Identities=33% Similarity=0.596 Sum_probs=171.2
Q ss_pred CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC-------------------
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE------------------- 70 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g------------------- 70 (332)
+++++++|.||+|+|++||++.|++++.++.. ++|+|.||+ ||||+|||||+|||+ +
T Consensus 319 ~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~--~~G~I~VDe~lqTs~p~IYA~GDv~-~~~~~~~~~~~~~~~~~~~~ 395 (561)
T PTZ00058 319 GRKYEHFDYVIYCVGRSPNTEDLNLKALNIKT--PKGYIKVDDNQRTSVKHIYAVGDCC-MVKKNQEIEDLNLLKLYNEE 395 (561)
T ss_pred CCEEEECCEEEECcCCCCCccccCccccceec--CCCeEEECcCCccCCCCEEEeEecc-Cccccccccccccccccccc
Confidence 34579999999999999999998888777754 579999999 999999999999999 5
Q ss_pred ---------------CCCchhHHHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEE
Q psy3825 71 ---------------KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYH 135 (332)
Q Consensus 71 ---------------~~~la~vA~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~ 135 (332)
..++++.|..||+++|+||+|......++..+|+++|++|++|+|||||+||++++|.+++.+..
T Consensus 396 p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~ 475 (561)
T PTZ00058 396 PYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYE 475 (561)
T ss_pred cccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEE
Confidence 57899999999999999999864445678889999999999999999999999886544566543
Q ss_pred eecCCccccccCCCccchhhhhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCc
Q psy3825 136 AYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPT 215 (332)
Q Consensus 136 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (332)
..|.... |. .+
T Consensus 476 ~~~~~~~---------~~--------~~---------------------------------------------------- 486 (561)
T PTZ00058 476 SRFTNLF---------FS--------VY---------------------------------------------------- 486 (561)
T ss_pred eecchhh---------hh--------hh----------------------------------------------------
Confidence 3221100 00 00
Q ss_pred ccccCCCCCcchhhhhhcccCCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHH
Q psy3825 216 EFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETL 295 (332)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l 295 (332)
.-.| .+.++|++||++| +++++|||+|++|++|.|+|+.+++||++|+|++||
T Consensus 487 -------------------~~~~-------~~~~~g~~Kli~~-~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl 539 (561)
T PTZ00058 487 -------------------DMDP-------AQKEKTYLKLVCV-GKEELIKGLHIVGLNADEILQGFAVALKMNATKADF 539 (561)
T ss_pred -------------------cccc-------cCCCCeEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHH
Confidence 0001 1346799999999 789999999999999999999999999999999999
Q ss_pred hcccccCCCchHHHHHHHhh
Q psy3825 296 ESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 296 ~~~~~~~Pt~~e~~~~~~~~ 315 (332)
.+++++|||++|.+..++..
T Consensus 540 ~~~~~~hPt~~e~~~~~~~~ 559 (561)
T PTZ00058 540 DETIPIHPTAAEEFVTMAPW 559 (561)
T ss_pred hhcccCCCChHHHHHHhccC
Confidence 99999999999999887653
No 28
>KOG0405|consensus
Probab=100.00 E-value=4.2e-37 Score=299.39 Aligned_cols=199 Identities=41% Similarity=0.693 Sum_probs=179.3
Q ss_pred CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI 89 (332)
.++.-.+|.+|||+||.||+..|+|++.|++++ ++|.|+||+ .+||+|+|||+||++ ++..|+++|+.+|+.+++.+
T Consensus 270 ~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~-~~g~IivDeYq~Tnvp~I~avGDv~-gk~~LTPVAiaagr~la~rl 347 (478)
T KOG0405|consen 270 HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTD-KNGAIIVDEYQNTNVPSIWAVGDVT-GKINLTPVAIAAGRKLANRL 347 (478)
T ss_pred ccccccccEEEEEecCCCCcccccchhcceeeC-CCCCEEEeccccCCCCceEEecccc-CcEecchHHHhhhhhHHHHh
Confidence 343344999999999999999999999999999 899999999 999999999999999 88999999999999999999
Q ss_pred hC-CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825 90 YG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF 168 (332)
Q Consensus 90 ~G-~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 168 (332)
+| .+....+|.++|.++|+.|+++.|||||+||-++||.+++.++...|.|+.+.+.
T Consensus 348 F~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~---------------------- 405 (478)
T KOG0405|consen 348 FGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMS---------------------- 405 (478)
T ss_pred hcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhh----------------------
Confidence 98 5566789999999999999999999999999999998899998766554432221
Q ss_pred ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825 169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248 (332)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (332)
...
T Consensus 406 -----------------------------------------------------------------------------~~k 408 (478)
T KOG0405|consen 406 -----------------------------------------------------------------------------GRK 408 (478)
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 124
Q ss_pred cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHH
Q psy3825 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 311 (332)
Q Consensus 249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~ 311 (332)
.+.++||||. .++.|++|+|++|..+.|++|+++.|+++|.|-.|+.+++.+|||-+|+|-.
T Consensus 409 ~kt~mKlvc~-~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEElVT 470 (478)
T KOG0405|consen 409 EKTLMKLVCA-GKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEELVT 470 (478)
T ss_pred cceEEEEEEe-cCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHHhee
Confidence 6799999999 8899999999999999999999999999999999999999999999999854
No 29
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.8e-36 Score=299.49 Aligned_cols=197 Identities=27% Similarity=0.447 Sum_probs=169.2
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
.++++|.||+|+|++||++.|++++.|++++ ++| |.||+ +||++|||||+|||+ +.+++++.|..||++||.|+.|
T Consensus 253 ~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~-~~g-i~Vd~~~~ts~~~VyA~GD~~-~~~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 253 QEVNAEFVLVSVGRKPRVQQLNLEKAGVQFS-NKG-ISVNEHMQTNVPHIYACGDVI-GGIQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred EEEEeCEEEEecCCccCCCCCCchhcCceec-CCC-EEeCCCeecCCCCEEEEeecC-CCcccHHHHHHHHHHHHHHHcC
Confidence 4799999999999999999888888999987 666 99999 999999999999999 7789999999999999999998
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
.. ..+++..+|+++|++|++|+||+||+||++. |. ++.+....|.+. .|.
T Consensus 330 ~~-~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~~~---------~~~------------------ 379 (458)
T PRK06912 330 ED-VKVNYHAVPRCIYTSPEIASVGLTEKQAREQ-YG-DIRIGEFPFTAN---------GKA------------------ 379 (458)
T ss_pred CC-CCCCcCCCCeEEecCchhEEeeCCHHHHHHC-CC-CeEEEEEecCcc---------hhH------------------
Confidence 54 3466788999999999999999999999987 43 355543222110 010
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
. ..+.+.|
T Consensus 380 ---------------------------------------------------------------~---------~~~~~~g 387 (458)
T PRK06912 380 ---------------------------------------------------------------L---------IIGEQTG 387 (458)
T ss_pred ---------------------------------------------------------------h---------hcCCCce
Confidence 0 1245789
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
|+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus 388 ~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 450 (458)
T PRK06912 388 KVKVIVE-PKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQ 450 (458)
T ss_pred EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHH
Confidence 9999999 78999999999999999999999999999999999999999999999999988763
No 30
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.6e-36 Score=299.89 Aligned_cols=198 Identities=27% Similarity=0.458 Sum_probs=170.2
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+++++|.||+|+|++||+++|.++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||+.||.||.|
T Consensus 269 ~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~-~~G~i~vd~~~~Ts~~~VyA~GD~~-~~~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 269 QTLEVDKLIVSIGRVPNTDGLGLEAVGLKLD-ERGFIPVDDHCRTNVPNVYAIGDVV-RGPMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred eEEEcCEEEEccCCccCCCCCCcHhhCceeC-CCCeEeECCCCccCCCCEEEEEecc-CCcchHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999877788999998 789999999 999999999999998 6788999999999999999998
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
.. ..+++..+|+++|++|++|+||+||++|++. |. ++.+....|. ...|.
T Consensus 347 ~~-~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~------------------ 396 (475)
T PRK06327 347 QK-GHIDYNTIPWVIYTSPEIAWVGKTEQQLKAE-GV-EYKAGKFPFM---------ANGRA------------------ 396 (475)
T ss_pred CC-CCCCCCCCCeEEeCCcceEEEeCCHHHHHHc-CC-CEEEEEEccc---------ccchh------------------
Confidence 54 3467888999999999999999999999987 43 2444322211 11110
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
. ..+.+.|
T Consensus 397 ---------------------------------------------------------------~---------~~~~~~g 404 (475)
T PRK06327 397 ---------------------------------------------------------------L---------AMGEPDG 404 (475)
T ss_pred ---------------------------------------------------------------h---------hcCCCCe
Confidence 0 0145679
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
|+||++| +++++|||+|++|++|.|+||.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus 405 ~~klv~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 467 (475)
T PRK06327 405 FVKIIAD-AKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALA 467 (475)
T ss_pred EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHH
Confidence 9999999 78999999999999999999999999999999999999999999999999988763
No 31
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=294.87 Aligned_cols=197 Identities=30% Similarity=0.470 Sum_probs=170.7
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+++++|.||+|+|++||++++++++.|++++ +|+|.||+ +||++|+|||+|||+ +.+++++.|..||+++|.||+|
T Consensus 257 ~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~--~g~i~vd~~~~t~~~~VyAiGD~~-~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 257 ETLEADYVLVAVGRRPNTENLGLEELGVKTD--RGFIEVDEQLRTNVPNIYAIGDIV-GGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred EEEEeCEEEEeeCCccCCCCCCchhcCCeec--CCEEeECCCCccCCCCEEEeeecC-CCcchHHHHHHHHHHHHHHHcC
Confidence 6799999999999999999988889999986 78999999 999999999999998 6788999999999999999998
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
.. ..+++..+|.++|++|++++||+||+||++. |. ++.+.+..+.. ..|.
T Consensus 334 ~~-~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~-g~-~~~~~~~~~~~---------~~~~------------------ 383 (462)
T PRK06416 334 NP-HPIDYRGIPAVTYTHPEVASVGLTEAKAKEE-GF-DVKVVKFPFAG---------NGKA------------------ 383 (462)
T ss_pred CC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhc-CC-CeEEEEEecCc---------ChHh------------------
Confidence 54 4567888999999999999999999999997 53 35554432221 1110
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
. ..+.++|
T Consensus 384 ---------------------------------------------------------------~---------~~~~~~g 391 (462)
T PRK06416 384 ---------------------------------------------------------------L---------ALGETDG 391 (462)
T ss_pred ---------------------------------------------------------------H---------hcCCCce
Confidence 0 0145789
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
++||++| +++++|||+|++|++|.|+|+.+++||+.|+|++||.+++++|||++|.+..++..
T Consensus 392 ~~kli~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 454 (462)
T PRK06416 392 FVKLIFD-KKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALA 454 (462)
T ss_pred EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHH
Confidence 9999999 78999999999999999999999999999999999999999999999999988763
No 32
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-35 Score=292.27 Aligned_cols=199 Identities=29% Similarity=0.429 Sum_probs=169.0
Q ss_pred CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI 89 (332)
+++++++|.||+|+|++||++.+++++.++.++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..+|++++.++
T Consensus 236 ~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~-~~g~i~vd~~~~t~~~~IyaiGD~~-~~~~~~~~a~~~~~~~~~~~ 313 (438)
T PRK07251 236 EDETYRFDALLYATGRKPNTEPLGLENTDIELT-ERGAIKVDDYCQTSVPGVFAVGDVN-GGPQFTYISLDDFRIVFGYL 313 (438)
T ss_pred CCeEEEcCEEEEeeCCCCCcccCCchhcCcEEC-CCCcEEECCCcccCCCCEEEeeecC-CCcccHhHHHHHHHHHHHHH
Confidence 456799999999999999999988888899887 789999999 999999999999999 78899999999999999999
Q ss_pred hCCCC-cccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825 90 YGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF 168 (332)
Q Consensus 90 ~G~~~-~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 168 (332)
+|... ...++..+|+++|++|++|+||+||+||++. |. ++.+....+ ...+|.
T Consensus 314 ~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~-g~-~~~~~~~~~---------~~~~~~--------------- 367 (438)
T PRK07251 314 TGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEA-GL-PYAVKELLV---------AAMPRA--------------- 367 (438)
T ss_pred cCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhc-CC-CeEEEEEEC---------Ccchhh---------------
Confidence 97543 2345678999999999999999999999987 43 244433211 110110
Q ss_pred ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825 169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248 (332)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (332)
. ..+.
T Consensus 368 ------------------------------------------------------------------~---------~~~~ 372 (438)
T PRK07251 368 ------------------------------------------------------------------H---------VNND 372 (438)
T ss_pred ------------------------------------------------------------------h---------hcCC
Confidence 0 1245
Q ss_pred cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313 (332)
Q Consensus 249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 313 (332)
.+|++||++| +++++|||+|++|++|+|+|+.+++||++|+|+++|.+++++|||++|.+.++.
T Consensus 373 ~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 373 LRGAFKVVVN-TETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred CcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 6899999999 789999999999999999999999999999999999999999999999998764
No 33
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.8e-35 Score=291.69 Aligned_cols=198 Identities=28% Similarity=0.482 Sum_probs=170.1
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+++++|.||+|+|++||++.|+++..++..+ +|+|.||+ +||+.|+|||+|||+ +.+++++.|..||++||+||.|
T Consensus 266 ~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~--~g~i~Vd~~l~ts~~~IyAiGD~~-~~~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 266 KTLEADKVLVSVGRRPNTEGIGLENTDIDVE--GGFIQIDDFCQTKERHIYAIGDVI-GEPQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred EEEEeCEEEEeeCCccCCCCCCchhcCceec--CCEEEECCCcccCCCCEEEeeecC-CCcccHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999877788888764 68999999 999999999999999 6788999999999999999998
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
.....+++..+|.++|++|++|+||+||+||++. |. ++.+.+..|+. ..|.
T Consensus 343 ~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~-g~-~~~~~~~~~~~---------~~~~------------------ 393 (472)
T PRK05976 343 KKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEA-GY-DVKVGKFPFAA---------NGKA------------------ 393 (472)
T ss_pred CCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHc-CC-CEEEEEEECCc---------chhh------------------
Confidence 6545677888999999999999999999999987 43 35544332211 1110
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
. ..+.++|
T Consensus 394 ---------------------------------------------------------------~---------~~~~~~g 401 (472)
T PRK05976 394 ---------------------------------------------------------------L---------TYGESDG 401 (472)
T ss_pred ---------------------------------------------------------------h---------hcCCCce
Confidence 0 1245789
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
|+||++| +++++|||+|++|++|+|+|+.+++||+.++|++||.+++++|||++|.+..++..
T Consensus 402 ~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 464 (472)
T PRK05976 402 FVKVVAD-RDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALA 464 (472)
T ss_pred EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHH
Confidence 9999999 78999999999999999999999999999999999999999999999999988863
No 34
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=5.1e-34 Score=282.35 Aligned_cols=199 Identities=32% Similarity=0.517 Sum_probs=171.3
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+++++|.|++|+|++||++.|.+++.|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||+.+|+||.+
T Consensus 254 ~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~g~i~vd~~l~t~~~~IyaiGD~~-~~~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 254 ETLTGEKVLVAVGRKPNTEGLGLENLGVELD-ERGRIVVDEYMRTNVPGIYAIGDVI-GGPMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred EEEEeCEEEEecCCcccCCCCCcHhhCceEC-CCCcEeeCCCcccCCCCEEEeeecC-CCcccHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999766788999998 789999999 999999999999999 6788999999999999999998
Q ss_pred CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825 92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP 171 (332)
Q Consensus 92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 171 (332)
.....+++..+|.++|++|++++||++|++|++. |. ++.+....|+ +..|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~-g~-~~~~~~~~~~---------~~~~~------------------ 382 (461)
T TIGR01350 332 KEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEA-GY-DVKIGKFPFA---------ANGKA------------------ 382 (461)
T ss_pred CCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhC-CC-CeEEEEEeCc---------cchHH------------------
Confidence 6543677888999999999999999999999987 43 3554433221 11110
Q ss_pred CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825 172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251 (332)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (332)
. ..+.+.|
T Consensus 383 ---------------------------------------------------------------~---------~~~~~~g 390 (461)
T TIGR01350 383 ---------------------------------------------------------------L---------ALGETDG 390 (461)
T ss_pred ---------------------------------------------------------------H---------hcCCCce
Confidence 0 0245789
Q ss_pred EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315 (332)
Q Consensus 252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 315 (332)
++||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++..
T Consensus 391 ~~kl~~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 453 (461)
T TIGR01350 391 FVKIIAD-KKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALA 453 (461)
T ss_pred EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHH
Confidence 9999999 78999999999999999999999999999999999999999999999999888763
No 35
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=5.7e-34 Score=282.77 Aligned_cols=200 Identities=20% Similarity=0.338 Sum_probs=163.8
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCchh
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELTP 76 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la~ 76 (332)
+.+++++++++|.|++|+|++||+++ +++.|++++ ++|+|.||+ |||++|||||+|||+.. ..++++
T Consensus 220 v~~~~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~-~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~ 296 (438)
T PRK13512 220 VTFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLD-DKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAW 296 (438)
T ss_pred EEECCCCEEEeCEEEECcCCCcChHH--HHhcCcccC-CCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccch
Confidence 44456678999999999999999997 678899998 789999999 99999999999999831 246889
Q ss_pred HHHHHHHHHHHHHhCCCCccc-ccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhh
Q psy3825 77 VAVQAGKLLAARLYGNGTTQM-DYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYL 155 (332)
Q Consensus 77 vA~~qG~vAA~nI~G~~~~~~-~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 155 (332)
.|.+||+++|+||.|.....+ ++..+|+++|++|++|+||+||+||++. + +++.... .++
T Consensus 297 ~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~-~---~~~~~~~---------~~~------ 357 (438)
T PRK13512 297 GAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF-D---YKMVEVT---------QGA------ 357 (438)
T ss_pred HHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC-C---cEEEEEe---------cCC------
Confidence 999999999999998543223 5678999999999999999999999864 2 4433211 111
Q ss_pred hhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhccc
Q psy3825 156 KFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAY 235 (332)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (332)
++ .
T Consensus 358 ----~~-------------------------------------------------------------------------~ 360 (438)
T PRK13512 358 ----HA-------------------------------------------------------------------------N 360 (438)
T ss_pred ----cC-------------------------------------------------------------------------C
Confidence 00 0
Q ss_pred CCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHH
Q psy3825 236 YKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVT 313 (332)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~ 313 (332)
+ ..+.+.||+||++| +++++|||+|++|++ |.|+|+.+++||++|+|++||.++ +++||+++..++.+.
T Consensus 361 ~--------~~~~~~g~~klv~d-~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~ 431 (438)
T PRK13512 361 Y--------YPGNSPLHLRVYYD-TSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLIN 431 (438)
T ss_pred C--------cCCCceEEEEEEEE-CCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHH
Confidence 0 01457899999999 789999999999997 899999999999999999999996 999999998776654
Q ss_pred h
Q psy3825 314 I 314 (332)
Q Consensus 314 ~ 314 (332)
.
T Consensus 432 ~ 432 (438)
T PRK13512 432 M 432 (438)
T ss_pred H
Confidence 4
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.3e-32 Score=267.86 Aligned_cols=197 Identities=26% Similarity=0.344 Sum_probs=159.0
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCchhHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELTPVAVQA 81 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la~vA~~q 81 (332)
+.++++|.|++|+|++||+++ ++++|++++ ++|+|.||+ +||++|||||+|||+.. .+++++.|.+|
T Consensus 230 ~~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~-~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~q 306 (444)
T PRK09564 230 KGEYEADVVIVATGVKPNTEF--LEDTGLKTL-KNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKL 306 (444)
T ss_pred CCEEEcCEEEECcCCCcCHHH--HHhcCcccc-CCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHH
Confidence 347999999999999999987 688899987 789999999 99999999999999841 14688999999
Q ss_pred HHHHHHHHhCCCCcccccccc-eEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhcc
Q psy3825 82 GKLLAARLYGNGTTQMDYQNV-ATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYH 160 (332)
Q Consensus 82 G~vAA~nI~G~~~~~~~y~~v-P~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 160 (332)
|+++|+||.|... .++.... +.+.|++|++++||+||+||++. |. ++.+.... ..+ .|
T Consensus 307 g~~~a~ni~g~~~-~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~-g~-~~~~~~~~---------~~~-~~-------- 365 (444)
T PRK09564 307 GRMVGENLAGRHV-SFKGTLGSACIKVLDLEAARTGLTEEEAKKL-GI-DYKTVFIK---------DKN-HT-------- 365 (444)
T ss_pred HHHHHHHhcCCCC-CCCCcccceEEEECCEEEEEecCCHHHHHHC-CC-CeEEEEEe---------cCC-CC--------
Confidence 9999999998643 3333333 45669999999999999999987 53 24443211 011 00
Q ss_pred ccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcc
Q psy3825 161 AYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTE 240 (332)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (332)
++
T Consensus 366 -------------------------------------------------------------------------~~----- 367 (444)
T PRK09564 366 -------------------------------------------------------------------------NY----- 367 (444)
T ss_pred -------------------------------------------------------------------------Cc-----
Confidence 00
Q ss_pred cccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcccccC-CCchHHHHHHHhh
Q psy3825 241 FFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLESTVGIH-PTLAEEFTRVTIT 315 (332)
Q Consensus 241 ~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~~~~~-Pt~~e~~~~~~~~ 315 (332)
..+...||+||++| +++++|||+|++|++ +.|+|+.+++||++|+|+++|.++.+.| |+++|.++.+...
T Consensus 368 ----~~~~~~~~~klv~~-~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 439 (444)
T PRK09564 368 ----YPGQEDLYVKLIYE-ADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTWDALNVA 439 (444)
T ss_pred ----CCCCceEEEEEEEE-CCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCcCHHHHH
Confidence 12457899999999 789999999999996 8999999999999999999999987666 9999999876553
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.98 E-value=1.8e-31 Score=262.22 Aligned_cols=199 Identities=25% Similarity=0.324 Sum_probs=160.7
Q ss_pred ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCchhH
Q psy3825 8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELTPV 77 (332)
Q Consensus 8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la~v 77 (332)
...+++++++|.|++|+|++||+++ ++++|++++ ++|+|.||+ +||+.|+|||+|||+.. ..++++.
T Consensus 213 ~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~ 289 (427)
T TIGR03385 213 VFTSGGVYQADMVILATGIKPNSEL--AKDSGLKLG-ETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWG 289 (427)
T ss_pred EEcCCCEEEeCEEEECCCccCCHHH--HHhcCcccC-CCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHH
Confidence 3455678999999999999999987 678899998 789999999 99999999999999841 1357899
Q ss_pred HHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhh
Q psy3825 78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKF 157 (332)
Q Consensus 78 A~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 157 (332)
|.+||++||+||.|..........+|+++|++|++++||+||++|++. |.+ +.+.... ..+
T Consensus 290 A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~-g~~-~~~~~~~---------~~~-------- 350 (427)
T TIGR03385 290 ANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKL-NID-YKTVFVK---------AKT-------- 350 (427)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHC-CCC-eEEEEEe---------cCC--------
Confidence 999999999999986432223446889999999999999999999986 532 4432211 111
Q ss_pred hccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCC
Q psy3825 158 IYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYK 237 (332)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
++ .+
T Consensus 351 --~~-------------------------------------------------------------------------~~- 354 (427)
T TIGR03385 351 --HA-------------------------------------------------------------------------NY- 354 (427)
T ss_pred --CC-------------------------------------------------------------------------Cc-
Confidence 00 00
Q ss_pred CcccccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHH
Q psy3825 238 PTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRV 312 (332)
Q Consensus 238 ~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~ 312 (332)
..+.+.|++||++| +++++|||+|++|++ |+|+|+.+++||++|+|++||.++ ...||.++..++.+
T Consensus 355 -------~~~~~~g~~kli~~-~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~~~~ 423 (427)
T TIGR03385 355 -------YPGNSPLHLKLIYE-KDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWDPL 423 (427)
T ss_pred -------CCCCceEEEEEEEE-CCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCccchH
Confidence 01457899999999 789999999999999 999999999999999999999998 56889998766443
No 38
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.90 E-value=2.6e-23 Score=170.60 Aligned_cols=66 Identities=30% Similarity=0.572 Sum_probs=62.7
Q ss_pred CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313 (332)
Q Consensus 247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 313 (332)
+.+.|++||++| +++|+|||+|++|++|+|+|+.+++||++|+|+++|.+++++|||++|.+.+++
T Consensus 45 ~~~~g~~Kli~d-~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 45 PETEGFVKLIFD-KKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp TTTEEEEEEEEE-TTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred CCcceeeEEEEE-eeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 348899999999 789999999999999999999999999999999999999999999999999874
No 39
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.82 E-value=7.2e-20 Score=196.85 Aligned_cols=180 Identities=18% Similarity=0.315 Sum_probs=136.9
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---CCCchhHHHHHH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---KPELTPVAVQAG 82 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la~vA~~qG 82 (332)
+.+++++++++|.||+|+|++||+++ ++++|++++ ++|+|.||+ ||||+|+|||+|||+.. ...+++.|..||
T Consensus 224 v~~~dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~-~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a 300 (847)
T PRK14989 224 MRFADGSELEVDFIVFSTGIRPQDKL--ATQCGLAVA-PRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMA 300 (847)
T ss_pred EEECCCCEEEcCEEEECCCcccCchH--HhhcCccCC-CCCcEEECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHH
Confidence 45667889999999999999999986 678899998 789999999 99999999999999952 124789999999
Q ss_pred HHHHHHHhCCCCcccccccce-EEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccc
Q psy3825 83 KLLAARLYGNGTTQMDYQNVA-TTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161 (332)
Q Consensus 83 ~vAA~nI~G~~~~~~~y~~vP-~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 161 (332)
++||+||+|.. ..++...++ ...+.+.+++++|. +. +.+ +. . + +
T Consensus 301 ~vaa~~i~g~~-~~~~g~~~~~~lk~~G~~v~s~G~----~~---~~~----------------~~-~--~--------~ 345 (847)
T PRK14989 301 QVAVDHLLGSE-NAFEGADLSAKLKLLGVDVGGIGD----AH---GRT----------------PG-A--R--------S 345 (847)
T ss_pred HHHHHHhcCCC-cCCCCcccceEEEECCcceEeccc----cc---CCC----------------CC-c--e--------e
Confidence 99999999865 334444455 44566778888872 11 100 00 0 0 0
Q ss_pred cCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccc
Q psy3825 162 YYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241 (332)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (332)
. .|
T Consensus 346 ~-----------------------------------------------------------------------~~------ 348 (847)
T PRK14989 346 Y-----------------------------------------------------------------------VY------ 348 (847)
T ss_pred E-----------------------------------------------------------------------EE------
Confidence 0 00
Q ss_pred ccccCCCcceEEEEEEecCCCCcEEEEEEeCccH--HHHHHHHHHHHHCCCCHHHHhccccc---CCCc
Q psy3825 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNA--GEVIQGYAAAVKCGLTFETLESTVGI---HPTL 305 (332)
Q Consensus 242 ~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a--~e~i~~~~~ai~~~~t~~~l~~~~~~---~Pt~ 305 (332)
......+|.||+++ +++++|||++++|+.+ .++++.+...+..+.+.++|....+. ||++
T Consensus 349 ---~~~~~~~y~Klv~~-~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 413 (847)
T PRK14989 349 ---LDESKEIYKRLIVS-EDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSI 413 (847)
T ss_pred ---EcCCCCEEEEEEEE-CCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCCCCCCCCcc
Confidence 01235799999999 7899999999999954 89999998888888888888776543 7877
No 40
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.56 E-value=3.2e-14 Score=152.11 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=85.0
Q ss_pred eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---CCCchhHHHHH
Q psy3825 6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---KPELTPVAVQA 81 (332)
Q Consensus 6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la~vA~~q 81 (332)
++.+++++++++|.|++|+|++||+++ ++++|++++ |.|.||+ ||||.|+|||+|||+.. ...++..|..|
T Consensus 216 ~v~~~dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~---ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~q 290 (785)
T TIGR02374 216 RIRFKDGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN---RGIIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQ 290 (785)
T ss_pred EEEECCCCEEEcCEEEECCCCCcCcHH--HHhcCCccC---CCEEECCCcccCCCCEEEeeecceeCCcccccHHHHHHH
Confidence 355677889999999999999999986 567788774 4599999 99999999999999852 12467789999
Q ss_pred HHHHHHHHhCCCCcccccccc-eEEEEcCceeEEEcCCH
Q psy3825 82 GKLLAARLYGNGTTQMDYQNV-ATTVFTPLEYGCVGLSE 119 (332)
Q Consensus 82 G~vAA~nI~G~~~~~~~y~~v-P~~vftdPe~AsVGLTE 119 (332)
|+++|.||.|.....+..... ....+.+.+++++|...
T Consensus 291 a~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~ 329 (785)
T TIGR02374 291 AKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQ 329 (785)
T ss_pred HHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCC
Confidence 999999999865233332222 24457788999999754
No 41
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.55 E-value=6.2e-14 Score=136.27 Aligned_cols=107 Identities=24% Similarity=0.284 Sum_probs=83.3
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC--C-CCchhHHHHHH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE--K-PELTPVAVQAG 82 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g--~-~~la~vA~~qG 82 (332)
+.+++++++++|.|++|+|.+||+++ +++.|++.+ +| |.||+ |||+.|||||+|||+.. . ...+..|..||
T Consensus 218 v~~~~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~--~g-i~vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g 292 (377)
T PRK04965 218 ATLDSGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVN--RG-IVVDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSA 292 (377)
T ss_pred EEEcCCcEEECCEEEECcCCCcchHH--HHHCCCCcC--CC-EEECCCcccCCCCEEEeeecEeECCceeehHHHHHHHH
Confidence 45567788999999999999999986 567788875 56 99999 99999999999999851 1 13466789999
Q ss_pred HHHHHHHhCCCCccccccc-ceEEEEcCceeEEEcCCH
Q psy3825 83 KLLAARLYGNGTTQMDYQN-VATTVFTPLEYGCVGLSE 119 (332)
Q Consensus 83 ~vAA~nI~G~~~~~~~y~~-vP~~vftdPe~AsVGLTE 119 (332)
+++|.||.|.... +.... .+...+.+.+++++|-..
T Consensus 293 ~~~a~n~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ 329 (377)
T PRK04965 293 MALAKNLLGQNTP-LKLPAMLVKVKTPELPLQLAGETQ 329 (377)
T ss_pred HHHHHHhcCCCcc-cccCCccEEEecCceeeEECCCCC
Confidence 9999999986543 33322 345557778888888643
No 42
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.51 E-value=3.5e-13 Score=132.16 Aligned_cols=107 Identities=21% Similarity=0.097 Sum_probs=82.2
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC-----C---CCCchhH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH-----E---KPELTPV 77 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~-----g---~~~la~v 77 (332)
+.+.+++++++|.|++++|++||+++ ++++|++.+ + +|.||+ |||++|+|||+|||+. + ...+++.
T Consensus 220 v~l~~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~-gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~ 294 (396)
T PRK09754 220 LTLQSGETLQADVVIYGIGISANDQL--AREANLDTA--N-GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWEN 294 (396)
T ss_pred EEECCCCEEECCEEEECCCCChhhHH--HHhcCCCcC--C-CEEECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHH
Confidence 34566778999999999999999986 466787653 4 499999 9999999999999984 1 1245689
Q ss_pred HHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCH
Q psy3825 78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSE 119 (332)
Q Consensus 78 A~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTE 119 (332)
|..||++||+||+|... ........+....+..+.++|.+.
T Consensus 295 A~~qg~~aa~ni~g~~~-~~~~~p~~~~~~~~~~~~~~G~~~ 335 (396)
T PRK09754 295 ANNQAQIAAAAMLGLPL-PLLPPPWFWSDQYSDNLQFIGDMR 335 (396)
T ss_pred HHHHHHHHHHHhcCCCC-CCCCCCceEEEeCCccEEEeeCCC
Confidence 99999999999998642 223223345566678899998643
No 43
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.35 E-value=3.1e-12 Score=134.87 Aligned_cols=86 Identities=29% Similarity=0.372 Sum_probs=76.1
Q ss_pred ceeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC---CCCCchhHHHH
Q psy3825 5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH---EKPELTPVAVQ 80 (332)
Q Consensus 5 ~~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~---g~~~la~vA~~ 80 (332)
+++++++|+.+++|.|+||+|.+||++. ...+|+..+ +| |.||+ ||||+|+|||+|+|+. ....++.-+..
T Consensus 220 ~~vr~~DG~~i~ad~VV~a~GIrPn~el--a~~aGlavn--rG-Ivvnd~mqTsdpdIYAvGEcae~~g~~yGLVaP~ye 294 (793)
T COG1251 220 EGVRFADGTEIPADLVVMAVGIRPNDEL--AKEAGLAVN--RG-IVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYE 294 (793)
T ss_pred eeEeecCCCcccceeEEEecccccccHh--HHhcCcCcC--CC-eeecccccccCCCeeehhhHHHhcCccceehhHHHH
Confidence 5688999999999999999999999997 577899997 55 99999 9999999999999986 23578889999
Q ss_pred HHHHHHHHHhCCCCc
Q psy3825 81 AGKLLAARLYGNGTT 95 (332)
Q Consensus 81 qG~vAA~nI~G~~~~ 95 (332)
||+++|+|+.|....
T Consensus 295 q~~v~a~hl~~~~~~ 309 (793)
T COG1251 295 QAKVLADHLCGGEAE 309 (793)
T ss_pred HHHHHHHHhccCccc
Confidence 999999999987543
No 44
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.32 E-value=3.2e-12 Score=128.29 Aligned_cols=75 Identities=28% Similarity=0.326 Sum_probs=68.2
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
.+++++|.||+|+|++||+.+ +++.|++++ ++|+|.||+ +|||+|+|||+|||+ .++.++..|+.+|+.||.+|.
T Consensus 371 ~~~i~~D~Vi~AiG~~p~~~~--l~~~gl~~~-~~G~i~vd~~~~Ts~~~VfA~GD~~-~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 371 ECKLEADAVIVAIGNGSNPIM--AETTRLKTS-ERGTIVVDEDQRTSIPGVFAGGDII-LGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred eEEEECCEEEECCCCCCCchh--hhccCcccC-CCCeEEeCCCCccCCCCEEEecCCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999976 677889998 789999999 999999999999998 677889999999999999985
No 45
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=123.16 Aligned_cols=82 Identities=26% Similarity=0.284 Sum_probs=70.0
Q ss_pred eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CC-CCCCcEEEecccCCC----CCCchhHHH
Q psy3825 6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQ-TNIPNVFAVGDVLHE----KPELTPVAV 79 (332)
Q Consensus 6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lq-TSvpgIYAiGDva~g----~~~la~vA~ 79 (332)
.+.+++|+++++|.++|++|.+||. + ++++|++++ ++|+|.||+ || |+.|||||+|||+.. .++.+..|.
T Consensus 258 ~v~~~~g~~i~~d~vi~~~G~~~~~-~--~~~~~l~~~-~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~ 333 (424)
T PTZ00318 258 EVVLKDGEVIPTGLVVWSTGVGPGP-L--TKQLKVDKT-SRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVAS 333 (424)
T ss_pred EEEECCCCEEEccEEEEccCCCCcc-h--hhhcCCccc-CCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHH
Confidence 4566778899999999999999984 4 566788887 789999999 99 599999999999951 356788999
Q ss_pred HHHHHHHHHHhC
Q psy3825 80 QAGKLLAARLYG 91 (332)
Q Consensus 80 ~qG~vAA~nI~G 91 (332)
+||+++|+||.+
T Consensus 334 ~qg~~~A~ni~~ 345 (424)
T PTZ00318 334 QQGVYLAKEFNN 345 (424)
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 46
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.25 E-value=8.9e-12 Score=114.63 Aligned_cols=77 Identities=29% Similarity=0.296 Sum_probs=66.7
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
++++++++|.|++++|++||.+++ +.. ++++ ++|+|.||+ ++|++|+|||+|||+...++.+..|+.||+.||.+
T Consensus 220 g~~~~i~~D~vi~a~G~~~~~~~l--~~~-~~~~-~~g~i~v~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~ 295 (300)
T TIGR01292 220 GEEEELKVDGVFIAIGHEPNTELL--KGL-LELD-EGGYIVTDEGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALS 295 (300)
T ss_pred CceEEEEccEEEEeeCCCCChHHH--HHh-heec-CCCcEEECCCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHH
Confidence 445789999999999999999874 445 6777 689999999 99999999999999832577899999999999999
Q ss_pred Hh
Q psy3825 89 LY 90 (332)
Q Consensus 89 I~ 90 (332)
|.
T Consensus 296 i~ 297 (300)
T TIGR01292 296 AE 297 (300)
T ss_pred HH
Confidence 85
No 47
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.20 E-value=3.7e-11 Score=116.24 Aligned_cols=79 Identities=27% Similarity=0.308 Sum_probs=68.4
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
++++++++|.|++++|++|++.+. .+.+|++++ ++|+|.||+ ++|+.|+|||+|||+ +.+.++..|+.+|+.||.+
T Consensus 268 ~~~~~i~~D~vi~a~G~~p~~~l~-~~~~g~~~~-~~g~i~vd~~~~t~~~~vyaiGD~~-~~~~~~~~A~~~g~~aa~~ 344 (352)
T PRK12770 268 GSEFVLEADTVVFAIGEIPTPPFA-KECLGIELN-RKGEIVVDEKHMTSREGVFAAGDVV-TGPSKIGKAIKSGLRAAQS 344 (352)
T ss_pred CCeEEEECCEEEECcccCCCchhh-hcccCceec-CCCcEeeCCCcccCCCCEEEEcccc-cCcchHHHHHHHHHHHHHH
Confidence 455689999999999999998752 222788888 778999999 999999999999998 5678899999999999999
Q ss_pred HhC
Q psy3825 89 LYG 91 (332)
Q Consensus 89 I~G 91 (332)
|..
T Consensus 345 i~~ 347 (352)
T PRK12770 345 IHE 347 (352)
T ss_pred HHH
Confidence 863
No 48
>PRK12831 putative oxidoreductase; Provisional
Probab=99.19 E-value=4.2e-11 Score=121.06 Aligned_cols=75 Identities=29% Similarity=0.311 Sum_probs=66.5
Q ss_pred eeEEEcCEEEEccCccccCccccccc-cCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSN-AGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~-aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
..++++|.||+|+|+.|++.+ +.+ .|++++ ++|.|.||+ ++||+|+|||+|||+ .++.++..|+.+|+.||.+
T Consensus 380 ~~~i~~D~Vi~AiG~~p~~~~--~~~~~gl~~~-~~G~i~vd~~~~~Ts~pgVfAaGD~~-~g~~~v~~Ai~~G~~AA~~ 455 (464)
T PRK12831 380 EFVLEVDTVIMSLGTSPNPLI--SSTTKGLKIN-KRGCIVADEETGLTSKEGVFAGGDAV-TGAATVILAMGAGKKAAKA 455 (464)
T ss_pred eEEEECCEEEECCCCCCChhh--hcccCCceEC-CCCcEEECCCCCccCCCCEEEeCCCC-CCchHHHHHHHHHHHHHHH
Confidence 347999999999999999986 344 689988 789999997 899999999999998 5677899999999999999
Q ss_pred Hh
Q psy3825 89 LY 90 (332)
Q Consensus 89 I~ 90 (332)
|.
T Consensus 456 I~ 457 (464)
T PRK12831 456 ID 457 (464)
T ss_pred HH
Confidence 85
No 49
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.17 E-value=5.5e-11 Score=119.94 Aligned_cols=76 Identities=29% Similarity=0.369 Sum_probs=67.1
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC-C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD-e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI 89 (332)
.+++++|.||+|+|++|+...| ++++|++++ ++|.|+|| + ++|+.|+|||+|||+ +++.++..|+.+|+.||.+|
T Consensus 384 ~~~i~~D~VI~A~G~~p~~~~l-~~~~gl~~~-~~g~i~vd~~~~~Ts~~gVfa~GD~~-~g~~~~~~Av~~G~~AA~~i 460 (471)
T PRK12810 384 EFVLPADLVLLAMGFTGPEAGL-LAQFGVELD-ERGRVAAPDNAYQTSNPKVFAAGDMR-RGQSLVVWAIAEGRQAARAI 460 (471)
T ss_pred eEEEECCEEEECcCcCCCchhh-ccccCcccC-CCCCEEeCCCcccCCCCCEEEccccC-CCchhHHHHHHHHHHHHHHH
Confidence 4689999999999999996533 577889888 78999998 6 999999999999999 56778899999999999998
Q ss_pred h
Q psy3825 90 Y 90 (332)
Q Consensus 90 ~ 90 (332)
.
T Consensus 461 ~ 461 (471)
T PRK12810 461 D 461 (471)
T ss_pred H
Confidence 5
No 50
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.17 E-value=5.1e-11 Score=130.58 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=72.8
Q ss_pred cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825 9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA 87 (332)
Q Consensus 9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~ 87 (332)
++++.++++|.||+|+|++||+++ +++.|++++ ++|+|.||+ ++|+.|+|||+|||+ .++.++..|+.+|+.||.
T Consensus 760 tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld-~~G~I~VDetlqTs~pgVFAaGD~a-~Gp~tvv~Ai~qGr~AA~ 835 (1019)
T PRK09853 760 TGETVTLEADTVITAIGEQVDTEL--LKANGIPLD-KKGWPVVDANGETSLTNVYMIGDVQ-RGPSTIVAAIADARRAAD 835 (1019)
T ss_pred CCCeEEEEeCEEEECCCCcCChhH--HHhcCcccc-CCCCEEeCCCcccCCCCEEEEeccc-cCchHHHHHHHHHHHHHH
Confidence 456678999999999999999998 567899888 789999999 999999999999998 567889999999999999
Q ss_pred HHhCCC
Q psy3825 88 RLYGNG 93 (332)
Q Consensus 88 nI~G~~ 93 (332)
+|.+..
T Consensus 836 nI~~~~ 841 (1019)
T PRK09853 836 AILSRE 841 (1019)
T ss_pred HHhhhc
Confidence 998743
No 51
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.16 E-value=9.1e-11 Score=112.95 Aligned_cols=81 Identities=28% Similarity=0.336 Sum_probs=67.8
Q ss_pred eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCC-CCCcEEEecccCCC----CCCchhHHH
Q psy3825 6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQT-NIPNVFAVGDVLHE----KPELTPVAV 79 (332)
Q Consensus 6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqT-SvpgIYAiGDva~g----~~~la~vA~ 79 (332)
.+.+++++++++|.|++++|.+|+.. +...|+.++ ++|+|.||+ +|| +.|+|||+|||+.. .++.++.|.
T Consensus 221 ~v~~~~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~-~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~ 296 (364)
T TIGR03169 221 ALILADGRTLPADAILWATGARAPPW---LAESGLPLD-EDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAV 296 (364)
T ss_pred eEEeCCCCEEecCEEEEccCCChhhH---HHHcCCCcC-CCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHH
Confidence 35566778999999999999999964 455678887 789999999 998 99999999999841 234677899
Q ss_pred HHHHHHHHHHh
Q psy3825 80 QAGKLLAARLY 90 (332)
Q Consensus 80 ~qG~vAA~nI~ 90 (332)
.||+++|+||.
T Consensus 297 ~~g~~~a~ni~ 307 (364)
T TIGR03169 297 RQAPILAANLR 307 (364)
T ss_pred HhHHHHHHHHH
Confidence 99999999996
No 52
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.16 E-value=2.4e-11 Score=123.95 Aligned_cols=76 Identities=26% Similarity=0.302 Sum_probs=65.5
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
++++++|.|++++|++||++++ +.. ++++ ++|+|.||+ +||++|+|||+|||+......+..|+.+|..||.++.
T Consensus 434 ~~~i~~D~vi~a~G~~Pn~~~l--~~~-~~~~-~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~ 509 (515)
T TIGR03140 434 EKQLDLDGVFVQIGLVPNTEWL--KDA-VELN-RRGEIVIDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred EEEEEcCEEEEEeCCcCCchHH--hhh-cccC-CCCeEEECCCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHH
Confidence 4679999999999999999984 444 7787 789999999 9999999999999984334567899999999999986
Q ss_pred C
Q psy3825 91 G 91 (332)
Q Consensus 91 G 91 (332)
.
T Consensus 510 ~ 510 (515)
T TIGR03140 510 D 510 (515)
T ss_pred H
Confidence 4
No 53
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.15 E-value=7.7e-11 Score=118.08 Aligned_cols=78 Identities=27% Similarity=0.314 Sum_probs=67.5
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA 87 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~ 87 (332)
++++++++|.|++|+|++||..++ .+..|+.++ ++|+|.||+ ++|++|+|||+|||+ .++.++..|+.+|+.||.
T Consensus 369 g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~~-~~g~i~vd~~~~~Ts~~~VfA~GD~~-~~~~~~~~A~~~G~~aA~ 445 (457)
T PRK11749 369 GSEFTLPADLVIKAIGQTPNPLIL-STTPGLELN-RWGTIIADDETGRTSLPGVFAGGDIV-TGAATVVWAVGDGKDAAE 445 (457)
T ss_pred CceEEEECCEEEECccCCCCchhh-ccccCccCC-CCCCEEeCCCCCccCCCCEEEeCCcC-CCchHHHHHHHHHHHHHH
Confidence 355689999999999999997753 245678888 789999998 889999999999999 567789999999999999
Q ss_pred HHh
Q psy3825 88 RLY 90 (332)
Q Consensus 88 nI~ 90 (332)
+|.
T Consensus 446 ~I~ 448 (457)
T PRK11749 446 AIH 448 (457)
T ss_pred HHH
Confidence 986
No 54
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.12 E-value=1.2e-10 Score=122.53 Aligned_cols=75 Identities=31% Similarity=0.379 Sum_probs=67.2
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI 89 (332)
..++++|.||+|+|+.||+++ ++..|++++ ++|+|.||+ ++|++|+|||+||++ ..+.++..|+.+|+.||.+|
T Consensus 421 ~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~-~~G~I~vd~~~~~Ts~pgVfA~GDv~-~g~~~v~~Ai~~G~~AA~~I 496 (652)
T PRK12814 421 EFTLQADTVISAIGQQVDPPI--AEAAGIGTS-RNGTVKVDPETLQTSVAGVFAGGDCV-TGADIAINAVEQGKRAAHAI 496 (652)
T ss_pred eEEEECCEEEECCCCcCCccc--ccccCcccc-CCCcEeeCCCCCcCCCCCEEEcCCcC-CCchHHHHHHHHHHHHHHHH
Confidence 347999999999999999987 567789887 789999997 899999999999998 56778899999999999998
Q ss_pred h
Q psy3825 90 Y 90 (332)
Q Consensus 90 ~ 90 (332)
.
T Consensus 497 ~ 497 (652)
T PRK12814 497 D 497 (652)
T ss_pred H
Confidence 5
No 55
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.11 E-value=1.8e-10 Score=116.44 Aligned_cols=77 Identities=26% Similarity=0.323 Sum_probs=66.9
Q ss_pred CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC----C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD----N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD----e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
+.+++++|.||+|+|++|+...+ +++.|++++ ++|+|.|| + ++|++|+|||+|||+ +.+.++..|+.+|+.|
T Consensus 381 ~~~~i~~D~Vi~a~G~~p~~~~~-~~~~gl~~~-~~g~i~vd~~~~~~~~T~~~gVfa~GD~~-~~~~~~~~Ai~~G~~a 457 (467)
T TIGR01318 381 SEFVLPADVVIMAFGFQPHAMPW-LAGHGITLD-SWGRIITGDVSYLPYQTTNPKIFAGGDAV-RGADLVVTAVAEGRQA 457 (467)
T ss_pred ceEEEECCEEEECCcCCCCcccc-ccccCccCC-CCCCEEeCCccccCccCCCCCEEEECCcC-CCccHHHHHHHHHHHH
Confidence 34689999999999999996432 567788888 78999999 7 899999999999998 6677889999999999
Q ss_pred HHHHh
Q psy3825 86 AARLY 90 (332)
Q Consensus 86 A~nI~ 90 (332)
|.+|.
T Consensus 458 A~~i~ 462 (467)
T TIGR01318 458 AQGIL 462 (467)
T ss_pred HHHHH
Confidence 99985
No 56
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.09 E-value=1.1e-10 Score=119.16 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=65.9
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
.+++++|.|++++|++||++++ +.. ++++ ++|+|.||+ +||++|||||+|||+......+..|+.+|..||.+++
T Consensus 433 ~~~i~~D~v~~~~G~~p~~~~l--~~~-v~~~-~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 433 EHHLELEGVFVQIGLVPNTEWL--KGT-VELN-RRGEIIVDARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF 508 (517)
T ss_pred EEEEEcCEEEEeECCccCchHH--hhh-eeeC-CCCcEEECcCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence 3579999999999999999984 444 7887 789999999 9999999999999984345678999999999999886
Q ss_pred C
Q psy3825 91 G 91 (332)
Q Consensus 91 G 91 (332)
.
T Consensus 509 ~ 509 (517)
T PRK15317 509 D 509 (517)
T ss_pred H
Confidence 4
No 57
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.09 E-value=4.2e-10 Score=113.07 Aligned_cols=94 Identities=24% Similarity=0.336 Sum_probs=74.5
Q ss_pred ceeecCCee-EEEcCEEEEccCccccCccccccc-cCceeecCCCeeecCC-CCC-CCCcEEEecccCCC-----CCCch
Q psy3825 5 TGASMDKVF-EDTYDTVLMAIGRRALTEETAVSN-AGVKVIPENAKIDSDN-EQT-NIPNVFAVGDVLHE-----KPELT 75 (332)
Q Consensus 5 ~~v~~~dg~-~I~aD~VLvAtGr~PNt~~L~Le~-aGl~ld~e~G~I~VDe-lqT-SvpgIYAiGDva~g-----~~~la 75 (332)
+++.++++. +|++|.++||+|.+++.-. ++ .|++.| .+|++.||+ ||+ +.|+|||+|||+.. .|+.+
T Consensus 238 ~~v~~~~g~~~I~~~tvvWaaGv~a~~~~---~~l~~~e~d-r~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tA 313 (405)
T COG1252 238 DGVTLKDGEEEIPADTVVWAAGVRASPLL---KDLSGLETD-RRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTA 313 (405)
T ss_pred CcEEEccCCeeEecCEEEEcCCCcCChhh---hhcChhhhc-cCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChh
Confidence 356666666 5999999999999998853 44 478887 789999999 886 89999999999962 26889
Q ss_pred hHHHHHHHHHHHHHh----CCCCcccccccc
Q psy3825 76 PVAVQAGKLLAARLY----GNGTTQMDYQNV 102 (332)
Q Consensus 76 ~vA~~qG~vAA~nI~----G~~~~~~~y~~v 102 (332)
+.|.+||+.+|+||. |++..++.|..-
T Consensus 314 Q~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~ 344 (405)
T COG1252 314 QAAHQQGEYAAKNIKARLKGKPLKPFKYKDK 344 (405)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccce
Confidence 999999999999997 434444555443
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.09 E-value=2.1e-10 Score=122.06 Aligned_cols=76 Identities=25% Similarity=0.352 Sum_probs=66.4
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
..++++|.||+|+|++||+.++. ...|++++ ++|+|.||+ ++||+|+|||+|||+ .++.++..|+.+|+.||.+|.
T Consensus 670 ~~~i~~D~Vi~A~G~~p~~~l~~-~~~gl~~~-~~G~i~vd~~~~Ts~~gVfA~GD~~-~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 670 TFTVDVDLVIVSVGVSPNPLVPS-SIPGLELN-RKGTIVVDEEMQSSIPGIYAGGDIV-RGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred eEEEECCEEEECcCCCCCccccc-cccCceEC-CCCCEEeCCCCCCCCCCEEEeCCcc-CCcHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999987531 23488898 789999999 999999999999999 567789999999999999986
No 59
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.08 E-value=2.3e-10 Score=120.04 Aligned_cols=76 Identities=29% Similarity=0.343 Sum_probs=66.3
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-----CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-----EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA 86 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-----lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA 86 (332)
..++++|.||+|+|+.|++..+ +++.|++++ ++|.|.||+ ++||+|+|||+||++ .++.++..|+.+|+.||
T Consensus 568 ~~~i~~D~Vi~AiG~~p~~~~~-~~~~gl~~~-~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~-~g~~~vv~Ai~~Gr~AA 644 (654)
T PRK12769 568 EFVMPADAVIMAFGFNPHGMPW-LESHGVTVD-KWGRIIADVESQYRYQTSNPKIFAGGDAV-RGADLVVTAMAEGRHAA 644 (654)
T ss_pred eEEEECCEEEECccCCCCcccc-ccccCCcCC-CCCCEEeCCCcccCcccCCCCEEEcCCcC-CCCcHHHHHHHHHHHHH
Confidence 3479999999999999996432 577889998 789999983 689999999999999 66788999999999999
Q ss_pred HHHh
Q psy3825 87 ARLY 90 (332)
Q Consensus 87 ~nI~ 90 (332)
.+|.
T Consensus 645 ~~I~ 648 (654)
T PRK12769 645 QGII 648 (654)
T ss_pred HHHH
Confidence 9986
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.07 E-value=2.2e-10 Score=125.85 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=71.4
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA 87 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~ 87 (332)
+++.++++|.||+|+|++||+++ +++.|++++ ++|+|.||+ ++|+.|+|||+|||+ .++.++..|+.+|+.||.
T Consensus 758 Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld-~~G~I~VD~~~~~Ts~pgVFAaGD~a-~GP~tVv~AIaqGr~AA~ 833 (1012)
T TIGR03315 758 GETVDLPADTVIAAVGEQVDTDL--LQKNGIPLD-EYGWPVVNQATGETNITNVFVIGDAN-RGPATIVEAIADGRKAAN 833 (1012)
T ss_pred CCeEEEEeCEEEEecCCcCChHH--HHhcCcccC-CCCCEEeCCCCCccCCCCEEEEeCcC-CCccHHHHHHHHHHHHHH
Confidence 45568999999999999999997 567889988 789999997 899999999999998 568889999999999999
Q ss_pred HHhCCC
Q psy3825 88 RLYGNG 93 (332)
Q Consensus 88 nI~G~~ 93 (332)
+|++..
T Consensus 834 nIl~~~ 839 (1012)
T TIGR03315 834 AILSRE 839 (1012)
T ss_pred HHhccc
Confidence 998743
No 61
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.06 E-value=2.9e-10 Score=115.57 Aligned_cols=75 Identities=29% Similarity=0.295 Sum_probs=64.9
Q ss_pred eeEEEcCEEEEccCcc-ccCccccccccCceeecCCCeeec-CC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRR-ALTEETAVSNAGVKVIPENAKIDS-DN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~-PNt~~L~Le~aGl~ld~e~G~I~V-De-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
..++++|.||+|+|++ ||+++ ++..|++++ ++|.|.+ |+ ++|++|+|||+|||+ .++.++..|+.+|+.||.+
T Consensus 398 ~~~i~~D~Vi~AiG~~~p~~~~--~~~~gl~~~-~~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~~~~~~Av~~G~~AA~~ 473 (485)
T TIGR01317 398 EEVFEADLVLLAMGFVGPEQIL--LDDFGVKKT-RRGNISAGYDDYSTSIPGVFAAGDCR-RGQSLIVWAINEGRKAAAA 473 (485)
T ss_pred eEEEECCEEEEccCcCCCcccc--ccccCcccC-CCCCEEecCCCceECCCCEEEeeccC-CCcHHHHHHHHHHHHHHHH
Confidence 4579999999999996 88887 567789887 7888855 56 999999999999998 5677888999999999999
Q ss_pred Hh
Q psy3825 89 LY 90 (332)
Q Consensus 89 I~ 90 (332)
|.
T Consensus 474 i~ 475 (485)
T TIGR01317 474 VD 475 (485)
T ss_pred HH
Confidence 85
No 62
>PRK10262 thioredoxin reductase; Provisional
Probab=99.03 E-value=2e-10 Score=109.09 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=60.7
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC------CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN------EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe------lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
.+++++|.||+++|++||++++ + .++.++ +|+|.||+ ++||+|+|||+|||++.....+..|+.+|..|
T Consensus 232 ~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~--~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~A 306 (321)
T PRK10262 232 IESLDVAGLFVAIGHSPNTAIF--E-GQLELE--NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMA 306 (321)
T ss_pred EEEEECCEEEEEeCCccChhHh--h-cccccc--CCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHH
Confidence 4579999999999999999863 2 256664 68899985 58999999999999953455677799999999
Q ss_pred HHHHh
Q psy3825 86 AARLY 90 (332)
Q Consensus 86 A~nI~ 90 (332)
|..|.
T Consensus 307 a~~~~ 311 (321)
T PRK10262 307 ALDAE 311 (321)
T ss_pred HHHHH
Confidence 98875
No 63
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.03 E-value=4.4e-10 Score=117.84 Aligned_cols=78 Identities=28% Similarity=0.391 Sum_probs=66.8
Q ss_pred CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-----CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-----EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-----lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
+..++++|.||+|+|++|+...+ ++++|++++ ++|.|.||+ +|||+|+|||+||++ .++.++..|+.+|+.|
T Consensus 550 ~~~~i~aD~Vi~AiG~~p~~~~~-~~~~gl~~~-~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~-~g~~~vv~Ai~~Gr~A 626 (639)
T PRK12809 550 SEFELPADVLIMAFGFQAHAMPW-LQGSGIKLD-KWGLIQTGDVGYLPTQTHLKKVFAGGDAV-HGADLVVTAMAAGRQA 626 (639)
T ss_pred ceEEEECCEEEECcCCCCCcccc-ccccCcccC-CCCCEEeCCCcccCcccCCCCEEEcCCCC-CCchHHHHHHHHHHHH
Confidence 34689999999999999986433 577889998 789999973 789999999999998 5677889999999999
Q ss_pred HHHHhC
Q psy3825 86 AARLYG 91 (332)
Q Consensus 86 A~nI~G 91 (332)
|.+|..
T Consensus 627 A~~i~~ 632 (639)
T PRK12809 627 ARDMLT 632 (639)
T ss_pred HHHHHH
Confidence 999863
No 64
>PRK13984 putative oxidoreductase; Provisional
Probab=99.02 E-value=4.7e-10 Score=116.26 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=62.5
Q ss_pred CeeEEEcCEEEEccCccccCcccccc-ccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVS-NAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le-~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
+++++++|.||+|+|++||+++|..+ ..+++++ +|+|.||+ +|||+|+|||+||++ ..+.+ ..|+.+|+.||.+
T Consensus 521 ~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~--~G~i~vd~~~~Ts~~gVfAaGD~~-~~~~~-v~Ai~~G~~AA~~ 596 (604)
T PRK13984 521 DQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFV--RGRILTNEYGQTSIPWLFAGGDIV-HGPDI-IHGVADGYWAAEG 596 (604)
T ss_pred ceEEEECCEEEEeeCCCCChhhhhhhhccCcccc--CCeEEeCCCCccCCCCEEEecCcC-CchHH-HHHHHHHHHHHHH
Confidence 44689999999999999999886422 1246553 68899999 999999999999999 55544 6799999999999
Q ss_pred Hh
Q psy3825 89 LY 90 (332)
Q Consensus 89 I~ 90 (332)
|.
T Consensus 597 I~ 598 (604)
T PRK13984 597 ID 598 (604)
T ss_pred HH
Confidence 85
No 65
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.99 E-value=5.6e-10 Score=115.14 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=60.4
Q ss_pred EcCE----EEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 16 TYDT----VLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 16 ~aD~----VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
++|. |++++|++||++++ + .+++++ ++|+|.||+ ||||+|+|||+|||+...+..+..|+.||++||.+|.
T Consensus 230 ~~D~~~~~Vi~a~G~~Pn~~l~--~-~~l~l~-~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 230 PKDAGTFGVFVFVGYAPSSELF--K-GVVELD-KRGYIPTNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred cccccceEEEEEeCCCCChhHH--h-hhcccC-CCCeEEeCCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 3676 99999999999874 3 368887 789999999 9999999999999984344567889999999999985
No 66
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.96 E-value=1.2e-09 Score=112.69 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=65.8
Q ss_pred CCeeEEEcCEEEEccCccccCccccccc-cCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSN-AGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA 86 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~-aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA 86 (332)
++..++++|.||+|+|+.|+++++ ++ .|++ + ++|+|.||+ ++|++|+|||+||++ .++.++..|+.+|+.||
T Consensus 362 g~~~~i~~D~Vi~A~G~~p~~~~~--~~~~gl~-~-~~G~i~vd~~~~~ts~~~Vfa~GD~~-~g~~~v~~Av~~G~~aA 436 (564)
T PRK12771 362 GEEETLEADLVVLAIGQDIDSAGL--ESVPGVE-V-GRGVVQVDPNFMMTGRPGVFAGGDMV-PGPRTVTTAIGHGKKAA 436 (564)
T ss_pred CceEEEECCEEEECcCCCCchhhh--hhccCcc-c-CCCCEEeCCCCccCCCCCEEeccCcC-CCchHHHHHHHHHHHHH
Confidence 334689999999999999998874 43 5777 6 689999998 889999999999998 56788999999999999
Q ss_pred HHHh
Q psy3825 87 ARLY 90 (332)
Q Consensus 87 ~nI~ 90 (332)
.+|.
T Consensus 437 ~~i~ 440 (564)
T PRK12771 437 RNID 440 (564)
T ss_pred HHHH
Confidence 9985
No 67
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.96 E-value=1.2e-09 Score=119.73 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=67.5
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA 87 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~ 87 (332)
++..++++|.||+|+|+.||... .....|++++ ++|.|.||+ ++||+|+|||+|||+ .++.++..|+.+|+.||.
T Consensus 544 G~e~~i~aD~VI~AiG~~p~~~l-~~~~~gle~~-~~G~I~vd~~~~~Ts~pgVFAaGD~~-~G~~~vv~Ai~eGr~AA~ 620 (944)
T PRK12779 544 GEIERVPVDLVIMALGNTANPIM-KDAEPGLKTN-KWGTIEVEKGSQRTSIKGVYSGGDAA-RGGSTAIRAAGDGQAAAK 620 (944)
T ss_pred CceEEEECCEEEEcCCcCCChhh-hhcccCceEC-CCCCEEECCCCCccCCCCEEEEEcCC-CChHHHHHHHHHHHHHHH
Confidence 33467999999999999999753 2344688888 789999996 899999999999999 567789999999999999
Q ss_pred HHhC
Q psy3825 88 RLYG 91 (332)
Q Consensus 88 nI~G 91 (332)
+|..
T Consensus 621 ~I~~ 624 (944)
T PRK12779 621 EIVG 624 (944)
T ss_pred HHHH
Confidence 9964
No 68
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.96 E-value=9.6e-09 Score=97.93 Aligned_cols=110 Identities=23% Similarity=0.207 Sum_probs=80.9
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCc-eeecCCCeeecCC-CCCC-CCcEEEecccCCC---------CCCc
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGV-KVIPENAKIDSDN-EQTN-IPNVFAVGDVLHE---------KPEL 74 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl-~ld~e~G~I~VDe-lqTS-vpgIYAiGDva~g---------~~~l 74 (332)
+...++.++++|.+++++|.+||+.+ ..+.+. ... .+|+|.||+ ++|+ .++|||+|||+.. ....
T Consensus 216 ~~~~~~~~~~~d~~~~~~g~~p~~~l--~~~~~~~~~~-~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~ 292 (415)
T COG0446 216 VVGIDGEEIKADLVIIGPGERPNVVL--ANDALPGLAL-AGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIAL 292 (415)
T ss_pred EEEeCCcEEEeeEEEEeecccccHHH--HhhCccceec-cCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeec
Confidence 35566778999999999999999776 344431 333 578899999 9997 9999999998751 1234
Q ss_pred hhHHHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHH
Q psy3825 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEE 120 (332)
Q Consensus 75 a~vA~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe 120 (332)
++.|..++++++.++.+. ...............+.....+|+++.
T Consensus 293 ~~~a~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (415)
T COG0446 293 WAIAVAAGRIAAENIAGA-LRIPGLLGTVISDVGDLCAASTGLTEG 337 (415)
T ss_pred hhhHhhhhHHHHHHhccc-cccccccCceEEEEcCeEEEEecCCcc
Confidence 578899999999999875 221122222344566788899999998
No 69
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.7e-09 Score=104.89 Aligned_cols=77 Identities=31% Similarity=0.367 Sum_probs=65.2
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
++.+++++|.|++++|..|++++ +...++ ++ ++|+|.||+ ++||+|+|||+||++.....++.+|..+|..||.+
T Consensus 220 ~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~-~~g~I~v~~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~ 295 (305)
T COG0492 220 GEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LD-ENGYIVVDEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALS 295 (305)
T ss_pred CceEEEEeceEEEecCCCCchHH--Hhhccc-cC-CCCcEEcCCCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHH
Confidence 34558999999999999999987 456666 77 799999999 99999999999999964444788899999999887
Q ss_pred Hh
Q psy3825 89 LY 90 (332)
Q Consensus 89 I~ 90 (332)
+.
T Consensus 296 a~ 297 (305)
T COG0492 296 AE 297 (305)
T ss_pred HH
Confidence 74
No 70
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.89 E-value=3e-09 Score=117.13 Aligned_cols=76 Identities=30% Similarity=0.402 Sum_probs=65.1
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC-----C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-----N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL 85 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD-----e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA 85 (332)
..++++|.||+|+|++||+.++. ...|++++ ++|.|.|| + ++||+|+|||+||++ .++.++..|+.+|+.|
T Consensus 670 ~~~i~~D~Vi~AiG~~p~~~~~~-~~~gl~l~-~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~-~G~~~vv~Ai~~Gr~A 746 (1006)
T PRK12775 670 FKDLECDTVIYALGTKANPIITQ-STPGLALN-KWGNIAADDGKLESTQSTNLPGVFAGGDIV-TGGATVILAMGAGRRA 746 (1006)
T ss_pred eEEEEcCEEEECCCcCCChhhhh-ccCCcccC-CCCcEEeCCCccccCcCCCCCCEEEecCcC-CCccHHHHHHHHHHHH
Confidence 35799999999999999987632 33478887 78889888 5 899999999999998 5678899999999999
Q ss_pred HHHHh
Q psy3825 86 AARLY 90 (332)
Q Consensus 86 A~nI~ 90 (332)
|.+|.
T Consensus 747 A~~I~ 751 (1006)
T PRK12775 747 ARSIA 751 (1006)
T ss_pred HHHHH
Confidence 99985
No 71
>KOG1336|consensus
Probab=98.84 E-value=2.7e-09 Score=108.39 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=64.7
Q ss_pred eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCC---------CCch
Q psy3825 6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEK---------PELT 75 (332)
Q Consensus 6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~---------~~la 75 (332)
.+.+.+++++++|.|++.+|.+||+.++ +. |..++ .+|+|.||+ |||++|||||+|||++.. ..-+
T Consensus 291 ~V~l~dg~~l~adlvv~GiG~~p~t~~~--~~-g~~~~-~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~ 366 (478)
T KOG1336|consen 291 EVKLKDGKTLEADLVVVGIGIKPNTSFL--EK-GILLD-SKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHV 366 (478)
T ss_pred EEEeccCCEeccCeEEEeeccccccccc--cc-cceec-ccCCEeehhceeeccCCcccccceeecccccccccccchHH
Confidence 3667788999999999999999999984 44 77788 799999999 999999999999999611 1223
Q ss_pred hHHHHHHHHHHHHHh
Q psy3825 76 PVAVQAGKLLAARLY 90 (332)
Q Consensus 76 ~vA~~qG~vAA~nI~ 90 (332)
..|..+|+.++..+.
T Consensus 367 ~~A~~~g~~av~ai~ 381 (478)
T KOG1336|consen 367 DHARASGRQAVKAIK 381 (478)
T ss_pred HHHHHHHHhhhhhhh
Confidence 466777775555554
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.53 E-value=1.9e-07 Score=96.13 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=65.8
Q ss_pred cCCeeEEEcCEEEEccCcc--ccCcc-ccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825 9 MDKVFEDTYDTVLMAIGRR--ALTEE-TAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL 84 (332)
Q Consensus 9 ~~dg~~I~aD~VLvAtGr~--PNt~~-L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v 84 (332)
+++.+++++|.||.|+|.+ |+.++ ++ +..|+..+ ++|+|.+|+ ++|++|||||+|||..|...++-.++.+|+.
T Consensus 335 tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~gv~~n-~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ 412 (491)
T PLN02852 335 TGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRGVVPN-VHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEE 412 (491)
T ss_pred CCCEEEEECCEEEEeecCCCCCCCCCccc-cCcCeeEC-CCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHH
Confidence 3455679999999999998 66653 22 33467777 789999998 9999999999999996545588889999999
Q ss_pred HHHHHhC
Q psy3825 85 LAARLYG 91 (332)
Q Consensus 85 AA~nI~G 91 (332)
++++|..
T Consensus 413 ta~~i~~ 419 (491)
T PLN02852 413 TVASIAE 419 (491)
T ss_pred HHHHHHH
Confidence 9999974
No 73
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.46 E-value=1.3e-07 Score=82.47 Aligned_cols=60 Identities=32% Similarity=0.465 Sum_probs=47.9
Q ss_pred ecCCeeEEEcCEEEEccCccccCcccc----------------------------------c-cccCceeecCCCeeecC
Q psy3825 8 SMDKVFEDTYDTVLMAIGRRALTEETA----------------------------------V-SNAGVKVIPENAKIDSD 52 (332)
Q Consensus 8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~----------------------------------L-e~aGl~ld~e~G~I~VD 52 (332)
..+++.++.+|.||+|+|..|+...+. | +.+|++++ ++|+|.||
T Consensus 102 ~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~-~~g~i~vd 180 (201)
T PF07992_consen 102 ETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELD-ENGFIKVD 180 (201)
T ss_dssp ETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBT-TTSSBEEB
T ss_pred ccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 356788999999999999886632110 1 45678887 78999999
Q ss_pred C-CCCCCCcEEEecccC
Q psy3825 53 N-EQTNIPNVFAVGDVL 68 (332)
Q Consensus 53 e-lqTSvpgIYAiGDva 68 (332)
+ +||++|||||+|||+
T Consensus 181 ~~~~t~~~~Iya~GD~a 197 (201)
T PF07992_consen 181 ENLQTSVPGIYAAGDCA 197 (201)
T ss_dssp TTSBBSSTTEEE-GGGB
T ss_pred ccccccccccccccccc
Confidence 9 999999999999998
No 74
>KOG2495|consensus
Probab=98.45 E-value=2.7e-07 Score=93.40 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=60.2
Q ss_pred cCCeeEEEcCEEEEccCccccCccccccccCceeecCCC--eeecCC-CCC-CCCcEEEecccCC--CCCCchhHHHHHH
Q psy3825 9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA--KIDSDN-EQT-NIPNVFAVGDVLH--EKPELTPVAVQAG 82 (332)
Q Consensus 9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G--~I~VDe-lqT-SvpgIYAiGDva~--g~~~la~vA~~qG 82 (332)
+++.++|+.-+++||+|..|..-. .++.-.++ +.| ++.||| ||. +.+||||+|||+. +.++++++|.+||
T Consensus 310 ~g~~~~iPYG~lVWatG~~~rp~~---k~lm~~i~-e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG 385 (491)
T KOG2495|consen 310 DGEIEEIPYGLLVWATGNGPRPVI---KDLMKQID-EQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQG 385 (491)
T ss_pred CCceeeecceEEEecCCCCCchhh---hhHhhcCC-ccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHH
Confidence 344578999999999999776532 22233344 455 799999 996 8999999999994 3455899999999
Q ss_pred HHHHHHHh
Q psy3825 83 KLLAARLY 90 (332)
Q Consensus 83 ~vAA~nI~ 90 (332)
..+|+++-
T Consensus 386 ~yLAk~fn 393 (491)
T KOG2495|consen 386 AYLAKNFN 393 (491)
T ss_pred HHHHHHHH
Confidence 99999874
No 75
>KOG0404|consensus
Probab=98.42 E-value=1.2e-07 Score=89.72 Aligned_cols=77 Identities=25% Similarity=0.286 Sum_probs=63.3
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL 84 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~v 84 (332)
+.+++.+.++++-++.++|-.|++++| ++ ++++| ++|+|+|-+ -.||+|++||+|||.+.+...+.+|...|.+
T Consensus 234 ~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d-~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGci 309 (322)
T KOG0404|consen 234 VKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELD-EDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCI 309 (322)
T ss_pred cccCcccccccceeEEEecCCchhhHh--cC-ceeec-cCceEEeccCcccccccceeeccccchHHHHHHHhhhccchh
Confidence 556777889999999999999999994 45 69999 899999976 7899999999999986555566666666666
Q ss_pred HHH
Q psy3825 85 LAA 87 (332)
Q Consensus 85 AA~ 87 (332)
+|-
T Consensus 310 aal 312 (322)
T KOG0404|consen 310 AAL 312 (322)
T ss_pred hhh
Confidence 553
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.2e-07 Score=94.29 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=61.6
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n 88 (332)
++...++-+-|++-+|..||++| |+.. ++++ ++|.|.||. ..||+|+|||+|||++......-.|+.+|..|+-.
T Consensus 434 ge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~-~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~ 509 (520)
T COG3634 434 GEEHHLELEGVFVQIGLLPNTEW--LKGA-VELN-RRGEIIVDARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLS 509 (520)
T ss_pred CceeEEEeeeeEEEEecccChhH--hhch-hhcC-cCccEEEecCCCcCCCceeecCcccCCccceEEEEecCcchhhhh
Confidence 34456778889999999999999 5565 8998 899999999 99999999999999964445555666666666554
Q ss_pred Hh
Q psy3825 89 LY 90 (332)
Q Consensus 89 I~ 90 (332)
.+
T Consensus 510 AF 511 (520)
T COG3634 510 AF 511 (520)
T ss_pred hh
Confidence 43
No 77
>KOG1346|consensus
Probab=98.27 E-value=3.8e-07 Score=92.42 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=68.3
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC------CCCCc--hhH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------EKPEL--TPV 77 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g~~~l--a~v 77 (332)
+.++||.++..|+|++|+|-.||+++ .+..|+++|.+-|.+.||. |+. ..|||++||++. |.... ...
T Consensus 428 lkL~dG~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D~~LGrRRVehhdh 504 (659)
T KOG1346|consen 428 LKLSDGSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFEDGVLGRRRVEHHDH 504 (659)
T ss_pred EEecCCCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeeheeec-ccceeeecchhhhhcccccceecccccc
Confidence 56688999999999999999999997 5778999984448899999 886 479999999985 22222 236
Q ss_pred HHHHHHHHHHHHhCCC
Q psy3825 78 AVQAGKLLAARLYGNG 93 (332)
Q Consensus 78 A~~qG~vAA~nI~G~~ 93 (332)
|+-.||.|++||.|..
T Consensus 505 avvSGRLAGENMtgAa 520 (659)
T KOG1346|consen 505 AVVSGRLAGENMTGAA 520 (659)
T ss_pred ceeeceeccccccccc
Confidence 7788999999999843
No 78
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.78 E-value=7.9e-06 Score=83.60 Aligned_cols=79 Identities=30% Similarity=0.392 Sum_probs=65.6
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-C-CCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-E-QTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA 87 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-l-qTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~ 87 (332)
++..++++|.|+.|+|..++...+.....++..+ .+|.|.+|+ + +||+|++||.||+. .+..++..|+.+|+.+|+
T Consensus 367 gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~ts~~~vfa~gD~~-~g~~~vv~ai~eGr~aak 444 (457)
T COG0493 367 GTEKTDAADTVILAIGFEGDATDGLLLEFGLKLD-KRGRIKVDENLQQTSIPGVFAGGDAV-RGAALVVWAIAEGREAAK 444 (457)
T ss_pred CceEEehHHHHHHHhccCCCcccccccccccccC-CCCceecccccccccCCCeeeCceec-cchhhhhhHHhhchHHHH
Confidence 4456789999999999998865533334467787 789999999 7 99999999999999 456788999999999998
Q ss_pred HHh
Q psy3825 88 RLY 90 (332)
Q Consensus 88 nI~ 90 (332)
.|.
T Consensus 445 ~i~ 447 (457)
T COG0493 445 AID 447 (457)
T ss_pred hhh
Confidence 774
No 79
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.73 E-value=5.1e-05 Score=83.89 Aligned_cols=73 Identities=14% Similarity=0.011 Sum_probs=54.2
Q ss_pred CCeeEEEcCEEEEccCccccCccccccccCcee--ecCC-CeeecCCCCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKV--IPEN-AKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA 86 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~l--d~e~-G~I~VDelqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA 86 (332)
++++++++|.|+++.|++||+++ +..+|+++ +... +++ -.|++|+|||+||++ +. ..+..|..+|+.||
T Consensus 393 g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~~-g~-~~~~~A~~eG~~Aa 464 (985)
T TIGR01372 393 GAGQRLEADALAVSGGWTPVVHL--FSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAAN-GL-FGLAAALADGAAAG 464 (985)
T ss_pred CceEEEECCEEEEcCCcCchhHH--HHhcCCCeeeccccCcee----cCCCCCCeEEeeccC-Cc-cCHHHHHHHHHHHH
Confidence 35678999999999999999997 34455433 3111 111 237899999999998 44 45677999999999
Q ss_pred HHHh
Q psy3825 87 ARLY 90 (332)
Q Consensus 87 ~nI~ 90 (332)
..++
T Consensus 465 ~~i~ 468 (985)
T TIGR01372 465 AAAA 468 (985)
T ss_pred HHHH
Confidence 8875
No 80
>KOG2755|consensus
Probab=97.49 E-value=7.2e-05 Score=72.36 Aligned_cols=54 Identities=31% Similarity=0.427 Sum_probs=45.9
Q ss_pred eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC
Q psy3825 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH 69 (332)
Q Consensus 13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~ 69 (332)
..+.+|.+++|+|..||++++ -+.-+++. +.|.|+||+ |+||.|+|||+||+..
T Consensus 267 ~qlt~d~ivSatgvtpn~e~~--~~~~lq~~-edggikvdd~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 267 NQLTCDFIVSATGVTPNSEWA--MNKMLQIT-EDGGIKVDDAMETSLPDVFAAGDVCT 321 (334)
T ss_pred ceeeeeEEEeccccCcCceEE--ecChhhhc-cccCeeehhhccccccceeeecceec
Confidence 357899999999999999963 33346666 788899999 9999999999999984
No 81
>KOG0399|consensus
Probab=97.37 E-value=0.00013 Score=81.23 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=62.6
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC-C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD-e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI 89 (332)
.+.+++|+||+|.|..-.-..+ .++.+++.| .++.|.+- + ..|++++|||+|||- .+..++..|+++||-+|+.+
T Consensus 2039 ee~~eadlv~lamgf~gpe~~~-~~~~~~~~d-~rsni~t~~~~y~t~v~~vfaagdcr-rgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2039 EEIIEADLVILAMGFVGPEKSV-IEQLNLKTD-PRSNILTPKDSYSTDVAKVFAAGDCR-RGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred ceeeecceeeeeccccCcchhh-hhhcCcccC-ccccccCCCccccccccceeeccccc-CCceEEEEEehhhhHHHHHH
Confidence 4679999999999986433332 577889998 78888874 4 899999999999998 56778999999999999886
Q ss_pred h
Q psy3825 90 Y 90 (332)
Q Consensus 90 ~ 90 (332)
-
T Consensus 2116 d 2116 (2142)
T KOG0399|consen 2116 D 2116 (2142)
T ss_pred H
Confidence 4
No 82
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.32 E-value=0.0006 Score=69.21 Aligned_cols=77 Identities=18% Similarity=0.080 Sum_probs=57.0
Q ss_pred eeEEEcCEEEEccCccccCcc-------------c--------------------cccccCceeecCCCeeecCC-CCCC
Q psy3825 12 VFEDTYDTVLMAIGRRALTEE-------------T--------------------AVSNAGVKVIPENAKIDSDN-EQTN 57 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~-------------L--------------------~Le~aGl~ld~e~G~I~VDe-lqTS 57 (332)
..++++|.||+|+|+.++..+ | .+...||.+| ++ ...||. .++.
T Consensus 302 ~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d-~~-~~p~~~~g~~~ 379 (422)
T PRK05329 302 DIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD-AT-LRPLDSQGGPV 379 (422)
T ss_pred eEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC-CC-cCcccCCCCee
Confidence 356899999999999766543 1 2245677776 33 566677 7788
Q ss_pred CCcEEEecccCCCCCCch------hHHHHHHHHHHHHHhC
Q psy3825 58 IPNVFAVGDVLHEKPELT------PVAVQAGKLLAARLYG 91 (332)
Q Consensus 58 vpgIYAiGDva~g~~~la------~vA~~qG~vAA~nI~G 91 (332)
.+||||+|++. ++...+ -+|+..|-.|+++|..
T Consensus 380 ~~nl~a~G~vl-~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 380 IENLYAAGAVL-GGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred ccceEEeeehh-cCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 99999999999 555544 3788888888888864
No 83
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.79 E-value=0.0024 Score=66.41 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=59.5
Q ss_pred cCCeeEEEcCEEEEccCccccCccccc-cccCceeecCCCeeecCC--C---CCCCCcEEEecccCCCCCCchhHHHHHH
Q psy3825 9 MDKVFEDTYDTVLMAIGRRALTEETAV-SNAGVKVIPENAKIDSDN--E---QTNIPNVFAVGDVLHEKPELTPVAVQAG 82 (332)
Q Consensus 9 ~~dg~~I~aD~VLvAtGr~PNt~~L~L-e~aGl~ld~e~G~I~VDe--l---qTSvpgIYAiGDva~g~~~la~vA~~qG 82 (332)
+++..++++|+|++++|..|....-.+ ..+|+..+ +.|+++... + +|+.+|||.+|=+. +|+-.+.++.||
T Consensus 457 ~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~-~~gF~k~~hPkl~pv~s~~~GIflAG~aq--gPkdI~~siaqa 533 (622)
T COG1148 457 TGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQD-EDGFLKEAHPKLRPVDSNRDGIFLAGAAQ--GPKDIADSIAQA 533 (622)
T ss_pred CccceecccceEEEeeccccCcchHHHHHhcCcccC-CCCccccCCCCcccccccCCcEEEeeccc--CCccHHHHHHHh
Confidence 345678999999999999985543223 34789998 799998864 5 47899999999775 677888888887
Q ss_pred HHHHHHH
Q psy3825 83 KLLAARL 89 (332)
Q Consensus 83 ~vAA~nI 89 (332)
..||...
T Consensus 534 ~aAA~kA 540 (622)
T COG1148 534 KAAAAKA 540 (622)
T ss_pred HHHHHHH
Confidence 7766543
No 84
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.97 E-value=0.0083 Score=63.34 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=36.8
Q ss_pred eeecC-------------C-CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHHh
Q psy3825 48 KIDSD-------------N-EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 48 ~I~VD-------------e-lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI~ 90 (332)
.|.|| + ++|++||+||+|||+. +...+++.+..+|++++.++.
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred EEEecCcccccccccccccccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence 48999 9 9999999999999974 245678888899999998875
No 85
>PRK08275 putative oxidoreductase; Provisional
Probab=95.26 E-value=0.018 Score=59.85 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=33.3
Q ss_pred CeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 47 AKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 47 G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
|.|.||+ ++|++|++||+|||+.........|.-.|+.|+.++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 4699999 9999999999999973222334456677888777765
No 86
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.12 E-value=0.021 Score=62.90 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=34.0
Q ss_pred CCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
.|+|.||. ++|++||+||+|||+.+.......|.-.|+.|+.++.
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~ 406 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA 406 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence 36799999 9999999999999974323333456677777777764
No 87
>KOG3851|consensus
Probab=94.42 E-value=0.054 Score=54.33 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=47.0
Q ss_pred eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCC-CCCcEEEecccCCCCCC--chhHHHHHHHHHH
Q psy3825 12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQT-NIPNVFAVGDVLHEKPE--LTPVAVQAGKLLA 86 (332)
Q Consensus 12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqT-SvpgIYAiGDva~g~~~--la~vA~~qG~vAA 86 (332)
.++++.+++=+.--.++. +. |.+..+ .| ..|++.||. +|. ..||||+||||. +.|. .+..+..|..++-
T Consensus 280 t~ei~yslLHv~Ppms~p-e~--l~~s~~-ad-ktGfvdVD~~TlQs~kypNVFgiGDc~-n~PnsKTaAAvaaq~~vv~ 353 (446)
T KOG3851|consen 280 TEEIEYSLLHVTPPMSTP-EV--LANSDL-AD-KTGFVDVDQSTLQSKKYPNVFGIGDCM-NLPNSKTAAAVAAQSPVVD 353 (446)
T ss_pred eeEEeeeeeeccCCCCCh-hh--hhcCcc-cC-cccceecChhhhccccCCCceeecccc-CCCchhhHHHHHhcCchhh
Confidence 356777776666554432 22 344443 35 689999998 775 799999999998 4442 2233345666676
Q ss_pred HHHh
Q psy3825 87 ARLY 90 (332)
Q Consensus 87 ~nI~ 90 (332)
+|+.
T Consensus 354 ~nl~ 357 (446)
T KOG3851|consen 354 KNLT 357 (446)
T ss_pred hhHH
Confidence 7765
No 88
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.10 E-value=0.064 Score=55.76 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=33.2
Q ss_pred CCeeecCC-CCCCCCcEEEecccCC----CCCCchhHH----HHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLH----EKPELTPVA----VQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~----g~~~la~vA----~~qG~vAA~nI~G 91 (332)
-|.|.||+ ++|++||+||+|||+. |...+...+ .-.|+.+++++..
T Consensus 357 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~ 411 (541)
T PRK07804 357 CGGVVTDVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAA 411 (541)
T ss_pred CCCEEECCCCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999 9999999999999973 223444443 4456777777653
No 89
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.75 E-value=0.1 Score=54.89 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=34.3
Q ss_pred CCeeecCC-CCCCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G 91 (332)
.|.|.||. +||++||+||+|||+.++ ..+ ...|+-.|++|++++..
T Consensus 358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 358 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred CCCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 57799999 999999999999997311 112 23456678888888764
No 90
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.39 E-value=0.09 Score=54.54 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=34.7
Q ss_pred CCeeecCC-CCCCCCcEEEecccCCCC---CCc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLHEK---PEL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~g~---~~l----a~vA~~qG~vAA~nI~G 91 (332)
.|.|.||+ +||++||+||+|+++.+. ..+ ...|.-.|++|++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence 46799999 999999999999997321 111 23567788999988864
No 91
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=93.22 E-value=0.088 Score=56.07 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=30.2
Q ss_pred C-CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHHh
Q psy3825 53 N-EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 53 e-lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI~ 90 (332)
. .+|++||+||+|||+. +...++..+..+|.+++.++.
T Consensus 400 ~~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~ 439 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAV 439 (614)
T ss_pred cCCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHH
Confidence 6 8899999999999974 223477788888888888775
No 92
>PRK09077 L-aspartate oxidase; Provisional
Probab=92.97 E-value=0.13 Score=53.49 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=34.7
Q ss_pred CCeeecCC-CCCCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .||++||+||+|+|+.++ ..+ ...|.-.|++|++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 46799999 999999999999997311 112 23556778899988864
No 93
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=92.49 E-value=0.15 Score=53.68 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=34.3
Q ss_pred CCeeecCC-CCCCCCcEEEecccCCCC----C----CchhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLHEK----P----ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~g~----~----~la~vA~~qG~vAA~nI~G 91 (332)
.|.|.||+ .+|++||+||+|+|+.++ . .....|.-.|++|++++..
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 46799999 999999999999996311 1 1224566778888888764
No 94
>PRK08071 L-aspartate oxidase; Provisional
Probab=92.15 E-value=0.18 Score=52.03 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=33.2
Q ss_pred CeeecCC-CCCCCCcEEEecccCCCC----CCch----hHHHHHHHHHHHHHhC
Q psy3825 47 AKIDSDN-EQTNIPNVFAVGDVLHEK----PELT----PVAVQAGKLLAARLYG 91 (332)
Q Consensus 47 G~I~VDe-lqTSvpgIYAiGDva~g~----~~la----~vA~~qG~vAA~nI~G 91 (332)
|.|.||. .||++||+||+|+|+.++ ..+. ..+.-.|+.|++++..
T Consensus 333 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 333 GGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred CCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 6799999 999999999999997311 2233 3445567888888754
No 95
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.15 E-value=0.2 Score=51.31 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=34.3
Q ss_pred CCeeecCC-CCCCCCcEEEecccCCCC----CCch----hHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLHEK----PELT----PVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~g~----~~la----~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .||++||+||+|+|+.++ ..+. ..|.-.|+.|++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 46799999 999999999999996311 1222 3456678888888864
No 96
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=91.91 E-value=0.19 Score=52.24 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=33.9
Q ss_pred CCeeecCC-CC----CCCCcEEEecccCCCCC--------CchhHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQ----TNIPNVFAVGDVLHEKP--------ELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lq----TSvpgIYAiGDva~g~~--------~la~vA~~qG~vAA~nI~ 90 (332)
-|.|.||. +| |++||+||+|+|+.++. .....|+-.|++|++++.
T Consensus 342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa 399 (566)
T TIGR01812 342 MGGIPTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAA 399 (566)
T ss_pred CCCeEECcCcccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHH
Confidence 47799999 99 99999999999973121 123456677888888875
No 97
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.87 E-value=0.15 Score=52.86 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=36.4
Q ss_pred eeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 48 KIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 48 ~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
+|.||+ ++|+++|+|++||.+ |-..-...|...|..+|+.|+
T Consensus 438 ri~~d~~~~t~i~gLy~aGdGA-G~argI~~Aaa~Gi~~A~~i~ 480 (486)
T COG2509 438 RIKVDEDLSTSIKGLYPAGDGA-GLARGIVSAAADGIKAAEGIA 480 (486)
T ss_pred eEeecccceeeecceEEccccc-cccchhHHHhhhhHHHHHHHH
Confidence 689999 999999999999999 766667788888988888876
No 98
>PRK08401 L-aspartate oxidase; Provisional
Probab=91.72 E-value=0.24 Score=50.46 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCeeecCC-CCCCCCcEEEecccCC-C---CCCch----hHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELT----PVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la----~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .||++||+||+|+|+. | ...+. ..+.-.|+.|++++..
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 47799999 9999999999999973 2 12223 2345668888888864
No 99
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.31 E-value=0.24 Score=52.48 Aligned_cols=45 Identities=24% Similarity=0.266 Sum_probs=32.6
Q ss_pred CCeeecCC-CCCCCCcEEEecccCCC---CCCch----hHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLHE---KPELT----PVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la----~vA~~qG~vAA~nI~ 90 (332)
.|.|.||. .+|++||+||+|+|+.+ ...+. ..+.-.|++|+.++.
T Consensus 370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa 422 (603)
T TIGR01811 370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTI 422 (603)
T ss_pred CCCeeECCCCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 37799999 99999999999999731 11222 345566777877765
No 100
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.08 E-value=0.51 Score=48.42 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=56.5
Q ss_pred eeecCCeeEEEcCEEEEccCccccCccccccccC-ceeecCCCee-ecC-C-CCCC-CCcEEEecccCCCCCCchhHHHH
Q psy3825 6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAG-VKVIPENAKI-DSD-N-EQTN-IPNVFAVGDVLHEKPELTPVAVQ 80 (332)
Q Consensus 6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aG-l~ld~e~G~I-~VD-e-lqTS-vpgIYAiGDva~g~~~la~vA~~ 80 (332)
.+.+.||+++++|.||+|+|.+++..+| +..| +.++ + +.+ ..= . +-.. .|++..+|=.. .....+.+..
T Consensus 266 ~V~f~DG~~~~~D~Ii~~TGy~~~~pfL--~~~~~i~v~-~-~~v~~Ly~~~f~~~~~p~LafiG~~~--~~~~f~~~E~ 339 (461)
T PLN02172 266 SIVFKNGKVVYADTIVHCTGYKYHFPFL--ETNGYMRID-E-NRVEPLYKHVFPPALAPGLSFIGLPA--MGIQFVMFEI 339 (461)
T ss_pred eEEECCCCCccCCEEEECCcCCcccccc--CcccceeeC-C-CcchhhHHhhcCCCCCCcEEEEeccc--cccCchhHHH
Confidence 3677888899999999999999999984 3322 3343 2 222 111 1 2233 48999999543 2345678889
Q ss_pred HHHHHHHHHhCCC
Q psy3825 81 AGKLLAARLYGNG 93 (332)
Q Consensus 81 qG~vAA~nI~G~~ 93 (332)
|++.+|.-+.|..
T Consensus 340 Qa~~~a~v~sG~~ 352 (461)
T PLN02172 340 QSKWVAAVLSGRV 352 (461)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998853
No 101
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.74 E-value=0.32 Score=50.95 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=33.0
Q ss_pred CCeeecCC-CCCC-CCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQTN-IPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lqTS-vpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~ 90 (332)
-|.|.||. .||+ +||+||+|+|+.++ ..+ ...+.-.|++|++++.
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 400 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVV 400 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 47799999 9985 99999999997311 112 2355677888888875
No 102
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=90.71 E-value=0.27 Score=51.38 Aligned_cols=46 Identities=28% Similarity=0.445 Sum_probs=36.0
Q ss_pred CeeecCC-CCCCCCcEEEecccCC----CCCCchhHHHH----HHHHHHHHHhCC
Q psy3825 47 AKIDSDN-EQTNIPNVFAVGDVLH----EKPELTPVAVQ----AGKLLAARLYGN 92 (332)
Q Consensus 47 G~I~VDe-lqTSvpgIYAiGDva~----g~~~la~vA~~----qG~vAA~nI~G~ 92 (332)
|.|.||. .|||+|++||+|.|+. |...|++.+.. -|..+|++|.+.
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred ccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 7799999 9999999999999986 33456665544 466678888764
No 103
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.69 E-value=0.27 Score=51.82 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCeeecCC-CCCCCCcEEEecccCCC---CCCch----hHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLHE---KPELT----PVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la----~vA~~qG~vAA~nI~ 90 (332)
-|.|.||. .+|++||+||+|+|+.+ ...+. ..|.-.|++|++++.
T Consensus 355 ~GGi~vd~~~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa 407 (589)
T PRK08641 355 MGGLWVDYDQMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAV 407 (589)
T ss_pred CCCeEECCCCCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 37799999 99999999999999732 11222 345667888887775
No 104
>PRK07512 L-aspartate oxidase; Provisional
Probab=90.57 E-value=0.33 Score=50.23 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=33.7
Q ss_pred CCeeecCC-CCCCCCcEEEecccCC-C---CCCch----hHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELT----PVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la----~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .+|++||+||+|+|+. | ...+. ..|.-.|++|++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999 9999999999999973 2 11222 2445678888888764
No 105
>KOG4716|consensus
Probab=90.22 E-value=0.094 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=19.5
Q ss_pred CCeeEEEcCEEEEccCccccCcc
Q psy3825 10 DKVFEDTYDTVLMAIGRRALTEE 32 (332)
Q Consensus 10 ~dg~~I~aD~VLvAtGr~PNt~~ 32 (332)
++.+.+.++.+++|+|-||.-..
T Consensus 155 gk~~~~ta~~fvIatG~RPrYp~ 177 (503)
T KOG4716|consen 155 GKERFLTAENFVIATGLRPRYPD 177 (503)
T ss_pred CceEEeecceEEEEecCCCCCCC
Confidence 45677999999999999998765
No 106
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.85 E-value=0.46 Score=49.77 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=33.7
Q ss_pred CCeeecCC-CCCC------CCcEEEecccCCCCC----Cc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTN------IPNVFAVGDVLHEKP----EL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTS------vpgIYAiGDva~g~~----~l----a~vA~~qG~vAA~nI~G 91 (332)
.|.|.||. .||+ +||+||+|+|+.++. .+ ...|+-.|++|++++..
T Consensus 352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~ 412 (577)
T PRK06069 352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAE 412 (577)
T ss_pred CCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 47799999 9998 999999999973121 11 23456778888888753
No 107
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.58 E-value=0.51 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=21.3
Q ss_pred CeeecCC-CCCCCCcEEEecccCC
Q psy3825 47 AKIDSDN-EQTNIPNVFAVGDVLH 69 (332)
Q Consensus 47 G~I~VDe-lqTSvpgIYAiGDva~ 69 (332)
|.|.||. .+|++||+||+|+|+.
T Consensus 407 GGi~vd~~~~T~i~GLyAaGE~~~ 430 (640)
T PRK07573 407 GGLWVDYNLMSTIPGLFVIGEANF 430 (640)
T ss_pred CCEEECCCCccccCCEEECccccc
Confidence 6799999 9999999999999974
No 108
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.47 E-value=0.49 Score=50.31 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=32.7
Q ss_pred CCeeecCC-C-CCCCCcEEEecccCCC---CCCc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-E-QTNIPNVFAVGDVLHE---KPEL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-l-qTSvpgIYAiGDva~g---~~~l----a~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. . +|++||+||+|+|+.+ ...+ ...|.-.|++|++++..
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~ 445 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAAD 445 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHH
Confidence 47799998 5 5999999999999742 1112 23556678888877753
No 109
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=88.09 E-value=0.99 Score=47.35 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=49.2
Q ss_pred ceeecCCeeEE-EcCEEEEccCccccCccccccccCceeecCCCeeecCC--CC--CCCCcEEEecccCCCCCCchhHHH
Q psy3825 5 TGASMDKVFED-TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQ--TNIPNVFAVGDVLHEKPELTPVAV 79 (332)
Q Consensus 5 ~~v~~~dg~~I-~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lq--TSvpgIYAiGDva~g~~~la~vA~ 79 (332)
+++.++||+++ ++|.||+|||.+.+..+|. +.-++.. ++.+..-. +- -..|++..+|=+. ......+.+.
T Consensus 308 ~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~--~~~~~LYk~vfp~~~~~ptLafIG~~~-~~g~~fp~~E 382 (531)
T PF00743_consen 308 NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVD--DNRVRLYKHVFPPNLDHPTLAFIGLVQ-PFGSIFPIFE 382 (531)
T ss_dssp SEEEETTSEEEEE-SEEEE---EE---TTB---TTTT-S---SSSSSEETTTEETETTSTTEEESS-SB-SSS-HHHHHH
T ss_pred ccccccccccccccccccccccccccccccc--ccccccc--ccccccccccccccccccccccccccc-cccccccccc
Confidence 46788898876 6999999999999988854 3334443 33333323 21 2458899999664 2223467899
Q ss_pred HHHHHHHHHHhCCC
Q psy3825 80 QAGKLLAARLYGNG 93 (332)
Q Consensus 80 ~qG~vAA~nI~G~~ 93 (332)
.||+.+|.-+.|..
T Consensus 383 lQArw~a~v~sG~~ 396 (531)
T PF00743_consen 383 LQARWAARVFSGRV 396 (531)
T ss_dssp HHHHHHHHHHTTSS
T ss_pred cccccccccccccc
Confidence 99999999998753
No 110
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=87.66 E-value=0.73 Score=49.45 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCeeecCC-CCC-CCCcEEEecccCCCC----CCch----hHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQT-NIPNVFAVGDVLHEK----PELT----PVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lqT-SvpgIYAiGDva~g~----~~la----~vA~~qG~vAA~nI~ 90 (332)
-|.|.||. .+| ++||+||+|+|+.++ ..+. ..++-.|++|++++.
T Consensus 372 mGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa 426 (657)
T PRK08626 372 MGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVA 426 (657)
T ss_pred cCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 36799999 999 599999999997311 1222 345567777777765
No 111
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.57 E-value=0.67 Score=48.61 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=33.3
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCCCC--------CchhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHEKP--------ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g~~--------~la~vA~~qG~vAA~nI~G 91 (332)
.|.|.||. .|| ++||+||+|+|+.++. .....|.-.|++|++++..
T Consensus 351 ~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 411 (575)
T PRK05945 351 MGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAE 411 (575)
T ss_pred CCCeeECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 46799998 876 7999999999973121 1224566778888888764
No 112
>PRK07395 L-aspartate oxidase; Provisional
Probab=87.52 E-value=0.7 Score=48.50 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=32.3
Q ss_pred CCeeecCC-CCCCCCcEEEecccCC----CCCCchh----HHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLH----EKPELTP----VAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~----g~~~la~----vA~~qG~vAA~nI~ 90 (332)
-|.|.||. .||++||+||+|+|+. |...+.. .+.-.|+.++..+.
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 47799999 9999999999999973 2223343 33445777777764
No 113
>PLN02815 L-aspartate oxidase
Probab=87.21 E-value=0.71 Score=49.00 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=32.7
Q ss_pred CCeeecCC-CCCCCCcEEEecccCC-C---CCCch----hHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELT----PVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la----~vA~~qG~vAA~nI~ 90 (332)
-|.|.||. .||++||+||+|+|+. + ...+. ..+.-.|+.|++++.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 47799999 9999999999999973 1 11233 344556777777765
No 114
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=87.09 E-value=0.72 Score=48.35 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=31.7
Q ss_pred CCeeecCC-CC---------CCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQ---------TNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lq---------TSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .| |++||+||+|+|+.++ ..+ ...|.-.|++|++++..
T Consensus 331 ~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~ 394 (565)
T TIGR01816 331 MGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAE 394 (565)
T ss_pred cCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 35677777 66 6799999999997311 112 23456778888888763
No 115
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.02 E-value=0.79 Score=48.21 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=32.1
Q ss_pred CCeeecCC-CC------CCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQ------TNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lq------TSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .| |++||+||+|+|+.++ ..+ ...|.-.|++|++++..
T Consensus 356 ~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 356 MGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred CCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 46688887 77 6899999999997311 112 23456678888888763
No 116
>PRK06175 L-aspartate oxidase; Provisional
Probab=85.10 E-value=1.2 Score=45.04 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=34.1
Q ss_pred CCeeecCC-CCCCCCcEEEecccCC-C---CCCch----hHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELT----PVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la----~vA~~qG~vAA~nI~G 91 (332)
.|.|.||. .||++||+||+|.++. + ...+. ..+.-.|++|++++..
T Consensus 331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred cCCEEECCCccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 57799999 9999999999999973 2 11233 3455678888888753
No 117
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.98 E-value=1 Score=47.57 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=33.4
Q ss_pred CCeeecCC-CCC---------CCCcEEEecccCCCCC----Cc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQT---------NIPNVFAVGDVLHEKP----EL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqT---------SvpgIYAiGDva~g~~----~l----a~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .|| ++||+||+|+|+.++. .+ ...|.-.|++|++++..
T Consensus 361 ~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~ 424 (591)
T PRK07057 361 MGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVD 424 (591)
T ss_pred CCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 46799998 887 6999999999973121 12 24567778888888864
No 118
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.47 E-value=1.2 Score=47.15 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=31.9
Q ss_pred CCeeecCC-CC----------CCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQ----------TNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lq----------TSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .| |++||+||+|+|+.++ ..+ ...|.-.|++|++++..
T Consensus 362 ~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 426 (598)
T PRK09078 362 MGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAE 426 (598)
T ss_pred CCCcccCCCceeecccccccCCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHH
Confidence 35677777 65 5799999999997311 112 23566778888888764
No 119
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.36 E-value=1.1 Score=47.11 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=31.0
Q ss_pred CeeecCC-CCC----------CCCcEEEecccCCCCC----Cc----hhHHHHHHHHHHHHHh
Q psy3825 47 AKIDSDN-EQT----------NIPNVFAVGDVLHEKP----EL----TPVAVQAGKLLAARLY 90 (332)
Q Consensus 47 G~I~VDe-lqT----------SvpgIYAiGDva~g~~----~l----a~vA~~qG~vAA~nI~ 90 (332)
|.|.||. .+| ++||+||+|+|+.++. .+ ...|.-.|++|++++.
T Consensus 340 GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 402 (570)
T PRK05675 340 GGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLE 402 (570)
T ss_pred CCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHH
Confidence 6677877 665 7999999999973111 12 2456677888888875
No 120
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.86 E-value=1.4 Score=46.56 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCeeecCC-CC----------CCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN-EQ----------TNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe-lq----------TSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~ 90 (332)
-|.|.||. .| |++||+||+|+|+.++ ..+ ...|+-.|++|++++.
T Consensus 357 ~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 420 (588)
T PRK08958 357 MGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ 420 (588)
T ss_pred CCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 35677776 66 5799999999997312 122 2456677888888875
No 121
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=83.77 E-value=1.1 Score=45.15 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=33.0
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCC-CC-------CchhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHE-KP-------ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g-~~-------~la~vA~~qG~vAA~nI~G 91 (332)
.|.|.||+ +|+ .+||+||+|.++.+ .. .-...++-.|++|++++..
T Consensus 399 ~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~ 459 (466)
T PRK08274 399 YLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAAR 459 (466)
T ss_pred cccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHH
Confidence 46688888 776 69999999999732 10 1234557789999988864
No 122
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=83.72 E-value=1.4 Score=47.10 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=32.0
Q ss_pred CCeeecCC-CC----------CCCCcEEEecccCCCC----CC----chhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQ----------TNIPNVFAVGDVLHEK----PE----LTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lq----------TSvpgIYAiGDva~g~----~~----la~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .| |++||+||+|+|+.++ .. ....|+-.|++|++++..
T Consensus 400 ~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~ 464 (635)
T PLN00128 400 MGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE 464 (635)
T ss_pred cCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 36677776 66 5799999999997311 11 234566778888888764
No 123
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.03 E-value=2.7 Score=43.29 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=53.3
Q ss_pred cCCeeEEEcCEEEEccCccccCc-cccccccCceeecCCCeeecCC-CCC--C---CCcEEEecccCC----CCCCchhH
Q psy3825 9 MDKVFEDTYDTVLMAIGRRALTE-ETAVSNAGVKVIPENAKIDSDN-EQT--N---IPNVFAVGDVLH----EKPELTPV 77 (332)
Q Consensus 9 ~~dg~~I~aD~VLvAtGr~PNt~-~L~Le~aGl~ld~e~G~I~VDe-lqT--S---vpgIYAiGDva~----g~~~la~v 77 (332)
+++..++++|.||+|||.+.... +|..-.--+..+ +.|...|+. .+. . .-.||+.|=... +.+.|.-.
T Consensus 321 ~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d-~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~ 399 (436)
T COG3486 321 TGELETVETDAVILATGYRRAVPSFLEGLADRLQWD-DDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLG 399 (436)
T ss_pred CCCceEEEeeEEEEecccccCCchhhhhHHHhhccc-ccCCeEecCceeeecCCCCcceEEEecccccccccCCccchHH
Confidence 45677899999999999984444 432111135667 788899987 432 2 236999986653 34555555
Q ss_pred HHHHHHHHHHHHhCCC
Q psy3825 78 AVQAGKLLAARLYGNG 93 (332)
Q Consensus 78 A~~qG~vAA~nI~G~~ 93 (332)
|.+.+ ..++.++|..
T Consensus 400 a~Raa-~I~~~L~g~~ 414 (436)
T COG3486 400 AWRAA-VILNSLLGRE 414 (436)
T ss_pred HHHHH-HHHHHHhCcC
Confidence 66654 4556777754
No 124
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=81.97 E-value=1.5 Score=46.70 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=32.6
Q ss_pred CCeeecCC-CCC----------CCCcEEEecccCCCC----CC----chhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQT----------NIPNVFAVGDVLHEK----PE----LTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqT----------SvpgIYAiGDva~g~----~~----la~vA~~qG~vAA~nI~G 91 (332)
-|.|.||. .|| ++||+||+|+|+.++ .. ....+.-.|++|++++..
T Consensus 379 ~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~ 443 (617)
T PTZ00139 379 MGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVME 443 (617)
T ss_pred cCCeEEcCCceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 36688887 775 699999999997311 11 234566778888888864
No 125
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=80.06 E-value=4.7 Score=41.47 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=30.0
Q ss_pred eecCC-CCC-----CCCcEEEecccCCCCCCc-----hhHHHHHHHHHHHHH
Q psy3825 49 IDSDN-EQT-----NIPNVFAVGDVLHEKPEL-----TPVAVQAGKLLAARL 89 (332)
Q Consensus 49 I~VDe-lqT-----SvpgIYAiGDva~g~~~l-----a~vA~~qG~vAA~nI 89 (332)
|.||+ +|. ..+|+||+|-+..|.... .-+|+..|-.||++|
T Consensus 367 V~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 367 VKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred ceEccccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhh
Confidence 88898 883 389999999998432211 237888888888876
No 126
>KOG1800|consensus
Probab=70.80 E-value=7.1 Score=40.31 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=51.6
Q ss_pred eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCC----CCCcEEEecccCCCCCCchhHHHHH
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQT----NIPNVFAVGDVLHEKPELTPVAVQA 81 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqT----SvpgIYAiGDva~g~~~la~vA~~q 81 (332)
+.+++.+++++++++.++|.+-..-. .||..| ++..|.-|. .+. -.|++|+.|=+..|....+..++++
T Consensus 321 ~~tg~~e~~p~~l~i~sIGYks~pv~-----~gipFd-~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~d 394 (468)
T KOG1800|consen 321 VPTGAFETLPCGLLIRSIGYKSVPVD-----SGIPFD-DKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQD 394 (468)
T ss_pred cccCceEeeccceeEeeeeecccccC-----CCCCcc-cccCcccCCCceEEeeccCCceEEEeeeccCCcceeeehhhh
Confidence 44567789999999999998643311 144444 222233333 332 2599999999875444566677888
Q ss_pred HHHHHHHHhC
Q psy3825 82 GKLLAARLYG 91 (332)
Q Consensus 82 G~vAA~nI~G 91 (332)
|..+|+.|..
T Consensus 395 Af~v~d~I~q 404 (468)
T KOG1800|consen 395 AFEVADTIVQ 404 (468)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 127
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=67.78 E-value=5.8 Score=39.69 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=30.9
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCCCC--------CchhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHEKP--------ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g~~--------~la~vA~~qG~vAA~nI~G 91 (332)
.|.|.||+ +|+ -+||+||+|.++.+.. .....|+-.|++|++++..
T Consensus 368 ~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~ 428 (432)
T TIGR02485 368 RYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAAR 428 (432)
T ss_pred ccceEECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHH
Confidence 35577776 554 3699999999862211 1134667889999999864
No 128
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=65.45 E-value=6.8 Score=40.47 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=32.2
Q ss_pred CCeeecCC-CC------CCCCcEEEecccCCCC---C----CchhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQ------TNIPNVFAVGDVLHEK---P----ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lq------TSvpgIYAiGDva~g~---~----~la~vA~~qG~vAA~nI~G 91 (332)
.|.|.||+ +| +.+|++||+|.++.+. . .....++-.||+|++++..
T Consensus 442 ~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~ 501 (506)
T PRK06481 442 MGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAE 501 (506)
T ss_pred ccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 46688887 66 3699999999997321 1 1124567789999988864
No 129
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=63.42 E-value=12 Score=38.73 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=26.7
Q ss_pred CCCcEEEecccCCCC----C----CchhHHHHHHHHHHHHHhCC
Q psy3825 57 NIPNVFAVGDVLHEK----P----ELTPVAVQAGKLLAARLYGN 92 (332)
Q Consensus 57 SvpgIYAiGDva~g~----~----~la~vA~~qG~vAA~nI~G~ 92 (332)
-+||+||+|.++.+. . .....|+-.|++|++++.++
T Consensus 468 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 468 PIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred EeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 489999999987311 1 11456788999999999864
No 130
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=59.29 E-value=12 Score=42.61 Aligned_cols=56 Identities=16% Similarity=0.016 Sum_probs=41.0
Q ss_pred CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCCCCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDelqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
...+|+||.||+|+|..||+..+ . .+ + .+-++.+++||. .+-.|+.+|+.++.+|.
T Consensus 711 ~~~~i~~~~vi~A~G~~~~~~~~---------~-~~--~---s~~~d~~~~f~G---------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 711 PRNDIKTKTVIMAIGIENNTQFD---------E-DK--Y---SYFGDCNPKYSG---------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ccccccCCEEEEecccCCccccc---------c-cc--c---ccccCCCCcccc---------HHHHHHHHHHhHHHHHH
Confidence 34689999999999999999862 1 11 1 133566777775 45678899999998884
No 131
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=58.07 E-value=12 Score=39.74 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCC----CC---C-chhHHHHHHHHHHHHHhCC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHE----KP---E-LTPVAVQAGKLLAARLYGN 92 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g----~~---~-la~vA~~qG~vAA~nI~G~ 92 (332)
.|.|.+|+ +|. -+||+||+|.++.+ .. . ....|+-.|++|++++.+.
T Consensus 508 ~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 508 SGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred CcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 45577776 542 48999999998731 01 1 1346688899999999763
No 132
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=57.57 E-value=10 Score=40.91 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.4
Q ss_pred cCC-CCCC-CCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 51 SDN-EQTN-IPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 51 VDe-lqTS-vpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
++. |+|. ++|+|.+||++ |... -..|..+|-+|+.|+.
T Consensus 348 l~~~le~k~~~gLf~AGqi~-Gt~G-y~eAaa~Gl~Ag~naa 387 (617)
T TIGR00136 348 LKPTLETKLIQGLFFAGQIN-GTTG-YEEAAAQGLMAGINAA 387 (617)
T ss_pred CchhheeCCCCCeEEccccC-Ccch-HHHHHHHHHHHHHHHH
Confidence 456 8885 89999999987 6444 3478888888888876
No 133
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=57.43 E-value=12 Score=38.22 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=27.4
Q ss_pred cCC-CCCC-CCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825 51 SDN-EQTN-IPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 51 VDe-lqTS-vpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~ 90 (332)
++. |+|. +||+|++|+.+ |... -..|..||-+|+.|+.
T Consensus 346 l~~~l~~k~~~~lf~AGqi~-G~~G-y~eaaa~G~~ag~na~ 385 (392)
T PF01134_consen 346 LLNTLETKKIPGLFFAGQIN-GTEG-YEEAAAQGLIAGINAA 385 (392)
T ss_dssp BBTTSBBSSSBTEEE-GGGG-TB-S-HHHHHHHHHHHHHHHH
T ss_pred cccceEECCCCCceECCCCc-chhH-HHHHHHHHHHHHHHHH
Confidence 345 7885 99999999998 5433 3566678888888875
No 134
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=56.94 E-value=12 Score=39.30 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCCC----C----CchhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHEK----P----ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g~----~----~la~vA~~qG~vAA~nI~G 91 (332)
.|.+.||+ +|. -+||+||+|.++.+. . .....|+-.|++|++++..
T Consensus 505 ~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~ 565 (574)
T PRK12842 505 FDGLRTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAG 565 (574)
T ss_pred CCCcCCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 45566666 542 489999999887311 1 1234668889999999874
No 135
>PRK12839 hypothetical protein; Provisional
Probab=56.80 E-value=12 Score=39.44 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCC----CCC----chhHHHHHHHHHHHHHhCC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHE----KPE----LTPVAVQAGKLLAARLYGN 92 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g----~~~----la~vA~~qG~vAA~nI~G~ 92 (332)
.|.|.+|+ +|. -+||+||+|.++.+ ... ....|+-.|++|++++...
T Consensus 506 ~GGl~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 506 FAGLVADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 45577776 552 48999999998631 111 2346788899999999753
No 136
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=56.62 E-value=20 Score=37.91 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=25.2
Q ss_pred CCCcEEEecccCCCC----C----CchhHHHHHHHHHHHHHhC
Q psy3825 57 NIPNVFAVGDVLHEK----P----ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 57 SvpgIYAiGDva~g~----~----~la~vA~~qG~vAA~nI~G 91 (332)
-+||+||+|.++.+. . .....|+-.|++|++++.+
T Consensus 521 pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 521 VIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 489999999887311 1 1235667889999999864
No 137
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=55.66 E-value=12 Score=39.38 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCCC----C---C-chhHHHHHHHHHHHHHhCC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHEK----P---E-LTPVAVQAGKLLAARLYGN 92 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g~----~---~-la~vA~~qG~vAA~nI~G~ 92 (332)
.|.+.||+ +|. .+||+||+|.++.+. . . ....|+-.|++|++++.+.
T Consensus 510 ~GGl~in~~~qVld~dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 510 ATGLVTDASARVLNADGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred CCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 34566665 442 489999999776321 1 1 2345788899999998753
No 138
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=55.05 E-value=3.5 Score=40.50 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=17.5
Q ss_pred CCeeecCC-CCC------CCCcEEEecccC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVL 68 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva 68 (332)
.|.|.||+ +|+ .+||+||+|+++
T Consensus 373 ~GGl~vd~~~~vl~~~g~pIpGLyAaGe~~ 402 (417)
T PF00890_consen 373 MGGLKVDEDAQVLDADGQPIPGLYAAGEAA 402 (417)
T ss_dssp S-EEEBETTSEEETTTCEEEEEEEE-SCCE
T ss_pred eEEeeeCcCcCccCCCCCEeCCEEEEEccc
Confidence 46677777 776 799999999998
No 139
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=55.01 E-value=19 Score=37.86 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCCC-----C---CchhHHHHHHHHHHHHHhCC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHEK-----P---ELTPVAVQAGKLLAARLYGN 92 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g~-----~---~la~vA~~qG~vAA~nI~G~ 92 (332)
.|.+.||+ +|. -+||+||+|.++.+. + .....|+-.|++|++++.+.
T Consensus 488 ~GGl~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 488 SGGLLTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCccCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 35577776 552 489999999887311 1 12356788999999999864
No 140
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=53.91 E-value=16 Score=38.19 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCC----C--CC-----CchhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLH----E--KP-----ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~----g--~~-----~la~vA~~qG~vAA~nI~G 91 (332)
.|.|.+|+ .|. -+||+||+|.++. + .. .....|+-.|++|++++..
T Consensus 485 ~GGl~id~~~qVld~dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 485 LGGLETDLDSRVLGADGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred ccCEeECCCCceeCCCCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 45577777 553 3799999999972 1 11 1134667889999998853
No 141
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=53.16 E-value=8.7 Score=38.34 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=18.8
Q ss_pred CCeeecCC-CCC------CCCcEEEecccC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVL 68 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva 68 (332)
.|.|.||+ +|+ .+||+||+|.++
T Consensus 384 ~GGl~~d~~~~vl~~~g~~IpGLyAaG~~~ 413 (439)
T TIGR01813 384 MGGVKINTKAEVLDAQGKPIPGLFAAGEVT 413 (439)
T ss_pred ccCeEECCCCeEECCCCCEecccEEeeecc
Confidence 46688888 763 599999999997
No 142
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=52.62 E-value=23 Score=37.22 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=30.9
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCCC----C---C-chhHHHHHHHHHHHHHhC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHEK----P---E-LTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g~----~---~-la~vA~~qG~vAA~nI~G 91 (332)
.|.+.||+ +|. -+||+||+|.++.+. . . ....|+-.|++|++++.+
T Consensus 495 ~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 495 KGGLRTDVRGRVLRDDGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCceECCCceEECCCCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 34466665 442 489999999997311 1 1 234678889999999865
No 143
>PRK07121 hypothetical protein; Validated
Probab=52.59 E-value=23 Score=36.25 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=32.5
Q ss_pred CceeecCC-CeeecCC-CCCCCCcEEEecccCCCC-------CCchhHHHHHHHHHHHHHhC
Q psy3825 39 GVKVIPEN-AKIDSDN-EQTNIPNVFAVGDVLHEK-------PELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 39 Gl~ld~e~-G~I~VDe-lqTSvpgIYAiGDva~g~-------~~la~vA~~qG~vAA~nI~G 91 (332)
|+.+| ++ +++. |. . .-+||+||+|.++.+. -.....|+-.|++|++++.+
T Consensus 431 Gl~id-~~~~qVl-d~~g-~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 431 GLRVD-EDTGEVL-RADG-APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred CeeEC-CCcceEE-CCCC-CCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 56666 55 5442 32 2 2489999999886311 11234678889999999875
No 144
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=52.17 E-value=18 Score=38.22 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=31.5
Q ss_pred CCeeecCC-CCC------CCCcEEEecccCCC---C-CC----chhHHHHHHHHHHHHHhCC
Q psy3825 46 NAKIDSDN-EQT------NIPNVFAVGDVLHE---K-PE----LTPVAVQAGKLLAARLYGN 92 (332)
Q Consensus 46 ~G~I~VDe-lqT------SvpgIYAiGDva~g---~-~~----la~vA~~qG~vAA~nI~G~ 92 (332)
.|.+.||+ +|. -+||+||+|.++.+ . .. ....|+-.|++|++++.+.
T Consensus 509 ~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 570 (581)
T PRK06134 509 FAGLKTDADARVLDQAGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGA 570 (581)
T ss_pred CCCccCCCCCceECCCCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhc
Confidence 35566666 542 48999999976522 1 11 2346678899999999864
No 145
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=51.08 E-value=15 Score=38.08 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=29.4
Q ss_pred cCC-CCC-CCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 51 SDN-EQT-NIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 51 VDe-lqT-SvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
.++ |++ .+||+|.+|.++ |..... .|..+|.+|+.|+..
T Consensus 321 l~~~l~~k~~~~l~~AGqi~-g~~Gy~-ea~a~G~~Ag~n~~~ 361 (436)
T PRK05335 321 LDPTLQLKKRPNLFFAGQIT-GVEGYV-ESAASGLLAGINAAR 361 (436)
T ss_pred CchhccccCCCCEEeeeeec-CchHHH-HHHHHHHHHHHHHHH
Confidence 345 787 689999999998 543333 788888888888863
No 146
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=49.63 E-value=17 Score=37.21 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHH
Q psy3825 54 EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 54 lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI 89 (332)
.+|..||+|.+||-+. +.+....-|+..|+.||+.+
T Consensus 437 ~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i 473 (474)
T TIGR02732 437 QKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHh
Confidence 3678899999999885 23455678899999999866
No 147
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=44.61 E-value=30 Score=36.87 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCeeecC-C-CCCCCCcEEEecccCC----CCCCc----hhHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSD-N-EQTNIPNVFAVGDVLH----EKPEL----TPVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VD-e-lqTSvpgIYAiGDva~----g~~~l----a~vA~~qG~vAA~nI~ 90 (332)
-|.|.+| . ..|.+|++||+|||+. |...+ ..-+.-.|++|+.++.
T Consensus 355 mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa 409 (562)
T COG1053 355 MGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAA 409 (562)
T ss_pred cCCEeecccccccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHH
Confidence 3669999 4 6788999999999984 11122 2234456666665554
No 148
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=42.95 E-value=25 Score=23.37 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHhccc
Q psy3825 276 GEVIQGYAAAVKCGLTFETLESTV 299 (332)
Q Consensus 276 ~e~i~~~~~ai~~~~t~~~l~~~~ 299 (332)
.|.++.+..|++.|+|.+|+.+.+
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL 26 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFL 26 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 478889999999999999998754
No 149
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=36.14 E-value=52 Score=31.71 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCCCCCcEEEecccCCCC-CCchhHHHHHHHHHHHHHh
Q psy3825 54 EQTNIPNVFAVGDVLHEK-PELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 54 lqTSvpgIYAiGDva~g~-~~la~vA~~qG~vAA~nI~ 90 (332)
+++..++||.+||-+.+. +...+-|+..|+.||+.|.
T Consensus 381 ~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 381 ARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred CCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 456679999999998532 3467789999999999875
No 150
>PLN02487 zeta-carotene desaturase
Probab=35.04 E-value=48 Score=35.33 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.9
Q ss_pred CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHHhC
Q psy3825 54 EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 54 lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI~G 91 (332)
.+|.++|+|.+||-+. +.|....-|+..|+.||+.++.
T Consensus 513 ~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~ 551 (569)
T PLN02487 513 QKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICE 551 (569)
T ss_pred CCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHH
Confidence 4788999999999885 3455566889999999998874
No 151
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=34.80 E-value=39 Score=34.42 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCeeecCC-----CCC-CCCcEEEecccCC-----CCCCchhHHHHHHHHHHHH
Q psy3825 46 NAKIDSDN-----EQT-NIPNVFAVGDVLH-----EKPELTPVAVQAGKLLAAR 88 (332)
Q Consensus 46 ~G~I~VDe-----lqT-SvpgIYAiGDva~-----g~~~la~vA~~qG~vAA~n 88 (332)
.|.|.+++ |+. .+||+|++|.+.+ |+ -..+.|...|.+|+++
T Consensus 357 ~GGV~~~eid~~TmeSk~~~gLyf~GEvLDvdG~~GG-YNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 357 AGGVDLKEIDPKTMESKLVPGLYFAGEVLDVDGPCGG-YNLQWAWSSGYLAGKY 409 (409)
T ss_dssp EEEE-GGGB-TTT-BBSSSTTEEE-GGGBSEEE-TTT-HHHHHHHHHHHHHHH-
T ss_pred CCCcCHHHCCHhhhcccCCCCeEEEEEEEEeccCcCc-hhHhHHHHHHHHhhCC
Confidence 35566654 554 4999999999986 22 2468999999999874
No 152
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=34.22 E-value=58 Score=30.49 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=28.0
Q ss_pred CCCCC-CcEEEecccCCCC-CCchhHHHHHHHHHHHHHh
Q psy3825 54 EQTNI-PNVFAVGDVLHEK-PELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 54 lqTSv-pgIYAiGDva~g~-~~la~vA~~qG~vAA~nI~ 90 (332)
+++.. ++||.+||-++.. .....-|+..|+.||+.|+
T Consensus 412 ~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 412 LRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp HHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 44555 7999999998522 3578999999999999874
No 153
>PTZ00188 adrenodoxin reductase; Provisional
Probab=33.50 E-value=82 Score=33.46 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=34.6
Q ss_pred cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCCCCC--CCCcEEEecccCC
Q psy3825 9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQT--NIPNVFAVGDVLH 69 (332)
Q Consensus 9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDelqT--SvpgIYAiGDva~ 69 (332)
+++.+++++|+|+-|+|.+... ++ |+..| ++ +.+.+.++ ..|++|++|=+-.
T Consensus 362 tg~~~~~~~~lV~rsiGY~g~p----~~--g~pFd-~~--~~n~~grv~~~~~g~Y~~GWiKr 415 (506)
T PTZ00188 362 FKENKVLVTPLVIFATGFKKSN----FA--ENLYN-QS--VQMFKEDIGQHKFAIFKAGWFDK 415 (506)
T ss_pred CCeeEEEEcCEEEEcccccCCC----CC--CCCcc-cc--CCCCCCcccCCCCCcEEeeecCc
Confidence 4455689999999999997643 22 45555 33 33332222 4799999998763
No 154
>PLN02612 phytoene desaturase
Probab=32.16 E-value=53 Score=34.65 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHHhC
Q psy3825 54 EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 54 lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI~G 91 (332)
++|..+|+|.+||-+. +.+...+-|+..|+.||+.|..
T Consensus 508 ~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~ 546 (567)
T PLN02612 508 QRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQ 546 (567)
T ss_pred ccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHH
Confidence 4577899999999984 2346788999999999999974
No 155
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=31.59 E-value=46 Score=30.47 Aligned_cols=26 Identities=23% Similarity=0.115 Sum_probs=20.3
Q ss_pred eecCCeeEEEcCEEEEccCccccCcc
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEE 32 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~ 32 (332)
+.++++.++.+|.|++|+|.+|+...
T Consensus 91 v~~~~~~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 91 VKTGDGKEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEeCCCCEEEeCEEEECCCCCcccCC
Confidence 33455678999999999999987643
No 156
>PRK07233 hypothetical protein; Provisional
Probab=31.27 E-value=68 Score=31.22 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=29.4
Q ss_pred CCCCCCcEEEecccCCC-CCCchhHHHHHHHHHHHHHhC
Q psy3825 54 EQTNIPNVFAVGDVLHE-KPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 54 lqTSvpgIYAiGDva~g-~~~la~vA~~qG~vAA~nI~G 91 (332)
+++..+|||.+||.... .......|+..|+.||+.++.
T Consensus 391 ~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~ 429 (434)
T PRK07233 391 YDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILE 429 (434)
T ss_pred cccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhh
Confidence 45678999999995321 223688999999999999975
No 157
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=28.19 E-value=82 Score=36.43 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCCcEEEecccCCCCC--------CchhHHHHHHHHHHHHHhC
Q psy3825 57 NIPNVFAVGDVLHEKP--------ELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 57 SvpgIYAiGDva~g~~--------~la~vA~~qG~vAA~nI~G 91 (332)
.+||+||+|.++. +. .....|+-.|++|++++..
T Consensus 859 pIpGLYAAGe~~g-g~~g~~y~gG~sl~~a~~fGriAG~~aa~ 900 (1167)
T PTZ00306 859 PILGLFGAGEVTG-GVHGGNRLGGNSLLECVVFGKIAGDRAAT 900 (1167)
T ss_pred eeCceEecceecc-ccccCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 4899999999973 21 1123567788888888874
No 158
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=27.19 E-value=44 Score=32.24 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.5
Q ss_pred eecCCeeEEEcCEEEEccCccccCcc
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEE 32 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~ 32 (332)
+.++++++++.|.+|+|+|.+|+...
T Consensus 86 V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 86 VLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred EEECCCCcccccEEEEccCCCCCCCC
Confidence 55667778999999999999987654
No 159
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=26.93 E-value=39 Score=28.91 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHh
Q psy3825 276 GEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 314 (332)
Q Consensus 276 ~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 314 (332)
.+.|-.++.|++.|.|+++|.+...++|-+=+.+..+..
T Consensus 10 d~Rlf~i~eAlrrG~sveeI~e~T~ID~wFL~~i~~Iv~ 48 (123)
T PF02787_consen 10 DERLFAIAEALRRGYSVEEIHELTKIDPWFLEQIKNIVD 48 (123)
T ss_dssp TTHHHHHHHHHHTTB-HHHHHHHH---HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHHHHH
Confidence 456778999999999999999999999998888877754
No 160
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=24.67 E-value=62 Score=31.95 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.9
Q ss_pred eecCCeeEEEcCEEEEccCccccC
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALT 30 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt 30 (332)
+.+++++++.+|.+|+|||.+|+.
T Consensus 91 v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 91 LVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCCCEEEcCEEEEccCCCCCC
Confidence 445667789999999999999864
No 161
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=23.79 E-value=1.1e+02 Score=31.24 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=28.3
Q ss_pred CCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 55 QTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 55 qTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+|.++|+|-+||.+. ...-++.+...|+.+|+.|.+
T Consensus 455 ~t~i~gLyl~G~~~~-pG~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 455 RTAIPGLYCVGDSCF-PGQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCCCCCeEEecCcCC-CCCCHHHHHHHHHHHHHHHHh
Confidence 477999999999883 223457778899999999875
No 162
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=23.66 E-value=95 Score=31.05 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=29.5
Q ss_pred CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHH
Q psy3825 54 EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARL 89 (332)
Q Consensus 54 lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI 89 (332)
+++..++||-+||-+. +.+....-|+..|+.||+.+
T Consensus 416 ~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 416 QKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred ccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 6677899999998764 23457889999999999876
No 163
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=23.22 E-value=64 Score=27.91 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=14.3
Q ss_pred eecCCeeEEEcCEEEEccCc--cccCcc
Q psy3825 7 ASMDKVFEDTYDTVLMAIGR--RALTEE 32 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr--~PNt~~ 32 (332)
+.+.+++++.+|.||+|+|. .|+...
T Consensus 117 v~~~~~~~~~a~~VVlAtG~~~~p~~p~ 144 (203)
T PF13738_consen 117 VTTRDGRTIRADRVVLATGHYSHPRIPD 144 (203)
T ss_dssp EEETTS-EEEEEEEEE---SSCSB---S
T ss_pred EEEEecceeeeeeEEEeeeccCCCCccc
Confidence 44556678999999999996 565543
No 164
>PRK07846 mycothione reductase; Reviewed
Probab=23.14 E-value=73 Score=32.37 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=20.8
Q ss_pred eecCCeeEEEcCEEEEccCccccCcc
Q psy3825 7 ASMDKVFEDTYDTVLMAIGRRALTEE 32 (332)
Q Consensus 7 v~~~dg~~I~aD~VLvAtGr~PNt~~ 32 (332)
+...+++++.+|.+|+|||.+|+...
T Consensus 119 V~v~~g~~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 119 LRTGDGEEITADQVVIAAGSRPVIPP 144 (451)
T ss_pred EEECCCCEEEeCEEEEcCCCCCCCCC
Confidence 45555668999999999999997644
No 165
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=22.38 E-value=1.4e+02 Score=30.40 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=27.9
Q ss_pred CCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825 55 QTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 55 qTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G 91 (332)
+|.++|+|.+|+-+..+ .-+..+...|+.+|+.|+.
T Consensus 455 ~t~i~gLyl~G~~~~pG-~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 455 RTPVKGLWLCGDSIHPG-EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCCeEEecCccCCC-CcHHHHHHHHHHHHHHHhh
Confidence 57899999999987322 2456777889999999875
No 166
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=22.34 E-value=57 Score=33.96 Aligned_cols=41 Identities=24% Similarity=0.525 Sum_probs=35.1
Q ss_pred CcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhh
Q psy3825 190 PTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLK 230 (332)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (332)
|-..++-||+||+|=..+|-.-..-|-|-+|...|++-|+.
T Consensus 18 pgalP~gqnsPq~~~~gLyaEqlsgtaFtapR~~n~rsWlY 58 (429)
T TIGR01015 18 PGALPVGQNSPQKCPYGLYAEQLSGSAFTAPRHENKRSWLY 58 (429)
T ss_pred CCCCCCCCCCcccCCCccchhhccCccccCCcccCccceee
Confidence 44556678999999999999999999999999999988763
No 167
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=21.59 E-value=93 Score=31.55 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=31.7
Q ss_pred CCeeecCC----CCC-CCCcEEEecccCC--C--CCCchhHHHHHHHHHHHHHh
Q psy3825 46 NAKIDSDN----EQT-NIPNVFAVGDVLH--E--KPELTPVAVQAGKLLAARLY 90 (332)
Q Consensus 46 ~G~I~VDe----lqT-SvpgIYAiGDva~--g--~~~la~vA~~qG~vAA~nI~ 90 (332)
.|+|.+++ |++ -+||+|.+|-+.+ | +--..+.|...|.+|+.++.
T Consensus 319 ~GGV~~~EI~~~~~Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~ 372 (376)
T TIGR03862 319 AGGVRQDALDESLMLKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVH 372 (376)
T ss_pred CCcccHHHcChhhhcccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHH
Confidence 35565544 553 3899999998875 1 12246889999999998775
No 168
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=21.20 E-value=71 Score=33.04 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=31.7
Q ss_pred CeeecCC-----CCC-CCCcEEEecccCC--C--CCCchhHHHHHHHHHHHHHhC
Q psy3825 47 AKIDSDN-----EQT-NIPNVFAVGDVLH--E--KPELTPVAVQAGKLLAARLYG 91 (332)
Q Consensus 47 G~I~VDe-----lqT-SvpgIYAiGDva~--g--~~~la~vA~~qG~vAA~nI~G 91 (332)
|.|.+++ |+. .+||+|.+|.+.+ + +--..+.|...|.+|++.+..
T Consensus 351 GGV~~~eid~kTmesk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~ 405 (408)
T COG2081 351 GGVDTKEIDSKTMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAA 405 (408)
T ss_pred CceehhhcCHHHHHhhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhh
Confidence 4455544 444 6999999998876 1 123567888889888888754
No 169
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=21.02 E-value=61 Score=33.82 Aligned_cols=41 Identities=27% Similarity=0.450 Sum_probs=35.3
Q ss_pred CcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhh
Q psy3825 190 PTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLK 230 (332)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (332)
|-..++-||+||+|=..+|-.-..-|-|-+|...|++.|+.
T Consensus 28 pgalP~gqnsPq~~~~gLyaEqlsgtaFtapr~~n~rswlY 68 (438)
T PRK05341 28 PGALPVGQNSPQRAPYGLYAEQLSGTAFTAPRAENRRSWLY 68 (438)
T ss_pred CCCCCCCCCCcccCCcccchhhccCccccCcCccccceeEE
Confidence 44556778999999999999999999999999999988763
No 170
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=20.98 E-value=1.7e+02 Score=20.59 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=15.6
Q ss_pred CcceEEEEEEecCCCCcEEEEE
Q psy3825 248 PQRCYLKVVCERAAPQKVLGMH 269 (332)
Q Consensus 248 ~~~~~~klv~~~~~~~~ilG~~ 269 (332)
+......+.+| +.||+||..+
T Consensus 44 ~~~~~~~v~VD-a~tG~Il~~~ 64 (64)
T PF03413_consen 44 PDGGEYEVYVD-AYTGEILSSY 64 (64)
T ss_dssp TTTEEEEEEEE-TTT--EEEEE
T ss_pred CCCCEEEEEEE-CCCCeEEEeC
Confidence 56778999999 9999999753
No 171
>PLN02658 homogentisate 1,2-dioxygenase
Probab=20.84 E-value=61 Score=33.80 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=35.3
Q ss_pred CcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhh
Q psy3825 190 PTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLK 230 (332)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (332)
|-..++-||+||+|=..+|-.-..-|-|-+|...|++-|+.
T Consensus 15 pgalP~gqnsPq~~~~gLyaEqlsgtaFtapR~~n~rsWlY 55 (435)
T PLN02658 15 PGALPRGQNNPLLCPYGLYAEQLSGTAFTAPRKLNRRSWLY 55 (435)
T ss_pred CCCCCCCCCCcccCCcccchhhccCccccCccccccceeEE
Confidence 44556678999999999999999999999999999988763
Done!