RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3825
(332 letters)
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 252 bits (645), Expect = 2e-80
Identities = 122/327 (37%), Positives = 165/327 (50%), Gaps = 98/327 (29%)
Query: 3 IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNV 61
+ E+ YDTVL+AIGR A T + + N GVK+ + KI +D EQTN+P +
Sbjct: 254 LVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYI 313
Query: 62 FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
+AVGD+L +KPELTPVA+QAG+LLA RL+ T DY+NV TTVFTPLEYG GLSEEK
Sbjct: 314 YAVGDILEDKPELTPVAIQAGRLLAQRLFKGSTVICDYENVPTTVFTPLEYGACGLSEEK 373
Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
A E +G +N+E++H+Y+
Sbjct: 374 AVEKFGEENVEVFHSYF------------------------------------------- 390
Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
P E+ IP R
Sbjct: 391 -------WPLEWTIPSR------------------------------------------- 400
Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
N +CY K+VC + ++V+G H +GPNAGEV QG+AAA++CGLT + L++T+GI
Sbjct: 401 ----DNHNKCYAKLVCNKKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGI 456
Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSCC 328
HP AE FT +++TKRSG+D Q CC
Sbjct: 457 HPVCAEVFTTLSVTKRSGQDILQQGCC 483
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 136 bits (343), Expect = 4e-36
Identities = 57/118 (48%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 17 YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTP 76
+DTVL A GR+ + ++ GV V ++ KI + N+ TNIPN+FAVGDV+ +PELTP
Sbjct: 267 FDTVLYATGRKPDIKGLNLNAIGVHV-NKSNKIIAPNDCTNIPNIFAVGDVVEGRPELTP 325
Query: 77 VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY 134
VA++AG LLA RL+ +DY + TT+FTP+EYG G S E A YG D++E Y
Sbjct: 326 VAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEY 383
Score = 85.3 bits (211), Expect = 2e-18
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 248 PQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
C K+VC ++ KV+G HF+GPNAGE+ QG++ A+K G +S +GIHPT AE
Sbjct: 413 SSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAE 472
Query: 308 EFTRVTITKRSGE 320
F +++T+RSGE
Sbjct: 473 VFMNLSVTRRSGE 485
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 130 bits (330), Expect = 2e-34
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHEKPEL 74
T D ++ AIGR T+ + NAGVK+ E I D + TN+P ++AVGDV + EL
Sbjct: 253 TVDCLIWAIGREPNTDGLGLENAGVKL-NEKGYIIVDEYQNTNVPGIYAVGDVTG-RVEL 310
Query: 75 TPVAVQAGKLLAARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
TPVA+ AG+ L+ RL+ N ++DY N+ T VF+ G VGL+EE+A E YG DN+++
Sbjct: 311 TPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKV 370
Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
Y + + P + Q C +K +
Sbjct: 371 YRSSFTPMYTALTGH-RQPCLMKLVVVG 397
Score = 85.6 bits (213), Expect = 2e-18
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
+K+Y + + P + Q C +K+V +KV+G+H IG A E+IQG+A A+K
Sbjct: 368 VKVYRSSFTPMYTALTGH-RQPCLMKLVVV-GKEEKVVGLHGIGFGADEMIQGFAVAIKM 425
Query: 289 GLTFETLESTVGIHPTLAEEFTRVT 313
G T ++TV IHPT AEEF VT
Sbjct: 426 GATKADFDNTVAIHPTAAEEF--VT 448
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 108 bits (270), Expect = 2e-26
Identities = 54/146 (36%), Positives = 91/146 (62%), Gaps = 5/146 (3%)
Query: 15 DTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHEKPE 73
D D ++ AIGR+ T+ + N G+K + E +I D Q TN+P ++A+GDV+ + E
Sbjct: 252 DDVDELIWAIGRKPNTKGLGLENVGIK-LNEKGQIIVDEYQNTNVPGIYALGDVVGKV-E 309
Query: 74 LTPVAVQAGKLLAARLYGNGTT-QMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
LTPVA+ AG+ L+ RL+ T ++DY NV T VF+ G +GL+E++A E YG +N++
Sbjct: 310 LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIK 369
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFI 158
+Y++ + P ++ Q+C +K +
Sbjct: 370 VYNSSFTPM-YYAMTSEKQKCRMKLV 394
Score = 66.0 bits (161), Expect = 6e-12
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAP-QKVLGMHFIGPNAGEVIQGYAAAVK 287
+K+Y++ + P ++ Q+C +K+VC A +KV+G+H IG E++QG+A A+K
Sbjct: 368 IKVYNSSFTPM-YYAMTSEKQKCRMKLVC--AGKEEKVVGLHGIGDGVDEMLQGFAVAIK 424
Query: 288 CGLTFETLESTVGIHPTLAEEF 309
G T ++TV IHPT +EE
Sbjct: 425 MGATKADFDNTVAIHPTSSEEL 446
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 106 bits (266), Expect = 1e-25
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKPEL 74
D VL+AIGR+ T+ + NAGV++ K+D D TN+P ++A+GDV+ P L
Sbjct: 260 EADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVI-GGPML 317
Query: 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
VA+ G++ A + G T +DY+ + + VFT E VGL+EE+A+E
Sbjct: 318 AHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI 370
Score = 66.8 bits (164), Expect = 3e-12
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
++K+V ++ ++LG H +GP A E+I A A++ G T E L T+ HPTL+
Sbjct: 389 GETDGFVKLVVDKET-GRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLS 447
Query: 307 EEFT 310
E
Sbjct: 448 EALK 451
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 93.7 bits (233), Expect = 2e-21
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
D VL A GR T + AGV++ A + +T+ P+++AVGDV ++ LTPV
Sbjct: 254 DVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIYAVGDVT-DRINLTPV 312
Query: 78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAY 137
A+ A +GN T D+ +AT VF+ G VGL+EE+A ++E+Y A
Sbjct: 313 AIHEATCFAETEFGNNPTSFDHDLIATAVFSQPPIGTVGLTEEEARR--KFGDIEVYRAE 370
Query: 138 YKPTEFFIPQRNPQRCYLKFI 158
++P + R ++ +K +
Sbjct: 371 FRPMKATFSGRQ-EKTLMKLV 390
Score = 77.5 bits (191), Expect = 7e-16
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 231 IYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGL 290
+Y A ++P + R ++ +K+V + A KVLG H +GP+A E+IQG A A+K G
Sbjct: 366 VYRAEFRPMKATFSGRQ-EKTLMKLVVD-AKDDKVLGAHMVGPDAAEIIQGLAIALKMGA 423
Query: 291 TFETLESTVGIHPTLAEEF 309
T + +STV +HPT AEE
Sbjct: 424 TKDDFDSTVAVHPTSAEEL 442
>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerisation domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 86.1 bits (214), Expect = 5e-21
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
+K+ +K + + ++K+V + ++LG H +GPNAGE+IQ A A+K
Sbjct: 28 VKVGKFPFKANGRALAYGE-TKGFVKLVADAE-TGRILGAHIVGPNAGELIQEAALAIKM 85
Query: 289 GLTFETLESTVGIHPTLAEEFTR 311
G T E L +T+ HPTL+E
Sbjct: 86 GATVEDLANTIHAHPTLSEALVE 108
Score = 52.6 bits (127), Expect = 6e-09
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 102 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
V + VFT E VGL+EE+A++ G +++ +K + + ++K + A
Sbjct: 1 VPSVVFTDPEIASVGLTEEEAKKKGG--EVKVGKFPFKANGRALAYGE-TKGFVKLVADA 57
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 83.9 bits (207), Expect = 7e-18
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 37/181 (20%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKP- 72
+ +D V+ +GR TE+ + +K K+D DN++T++ +++AVGD K
Sbjct: 322 YEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD-DNQRTSVKHIYAVGDCCMVKKN 380
Query: 73 --------------------------------ELTPVAVQAGKLLAARLYGNGTTQMDYQ 100
+LTPVA+ AG+LLA RL+G + +Y+
Sbjct: 381 QEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYK 440
Query: 101 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNP---QRCYLKF 157
+ + +F+ G +GLSE++A ++YG +N++IY + + F + +P ++ YLK
Sbjct: 441 LIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL 500
Query: 158 I 158
+
Sbjct: 501 V 501
Score = 68.5 bits (167), Expect = 8e-13
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 229 LKIYHAYYKPTEFFIPQRNP---QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAA 285
+KIY + + F + +P ++ YLK+VC + + G+H +G NA E++QG+A A
Sbjct: 471 VKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCV-GKEELIKGLHIVGLNADEILQGFAVA 529
Query: 286 VKCGLTFETLESTVGIHPTLAEEF 309
+K T + T+ IHPT AEEF
Sbjct: 530 LKMNATKADFDETIPIHPTAAEEF 553
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 83.8 bits (207), Expect = 8e-18
Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 6/143 (4%)
Query: 20 VLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVA 78
V+ A GR+ T+ + GVK + +N I+ D +T++P+++AVGDV ++ LTPVA
Sbjct: 342 VMFATGRKPNTKNLGLEEVGVK-MDKNGAIEVDEYSRTSVPSIWAVGDVT-DRINLTPVA 399
Query: 79 VQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYY 138
+ G LA L+GN T+ DY+ V + VF+ G VGL+EE+A E YG +++++ A +
Sbjct: 400 LMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANF 457
Query: 139 KPTEFFIPQRNPQRCYLKFIYHA 161
+P + + P R ++K I A
Sbjct: 458 RPLKATLSGL-PDRVFMKLIVCA 479
Score = 77.2 bits (190), Expect = 1e-15
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 248 PQRCYLKV-VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
P R ++K+ VC A KVLG+H G +A E+IQG+A AVK GLT ++TVGIHPT A
Sbjct: 468 PDRVFMKLIVC--AKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAA 525
Query: 307 EEF-TRVTITKRSGEDPTPQ 325
EEF T T T++ +D +
Sbjct: 526 EEFVTMRTPTRKIRKDSPSE 545
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 83.1 bits (206), Expect = 1e-17
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
T + VL+A+GR+ TE + GV+ + E +I D +TN+P ++A+GDV+ P L
Sbjct: 257 TGEKVLVAVGRKPNTEGLGLEKLGVE-LDERGRIVVDEYMRTNVPGIYAIGDVI-GGPML 314
Query: 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
VA G + A + G +DY V + ++T E VGL+EE+A+E
Sbjct: 315 AHVASHEGIVAAENIAGKEPAHIDYDAVPSVIYTDPEVASVGLTEEQAKE 364
Score = 58.0 bits (141), Expect = 2e-09
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
++K++ ++ ++LG H IGP+A E+I A A++ T E L T+ HPTL+E
Sbjct: 390 GFVKIIADKKT-GEILGAHIIGPHATELISEAALAMELEGTVEELARTIHPHPTLSE 445
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 80.8 bits (199), Expect = 7e-17
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
+G ++D D V+MAIGR T+ + GV++ + A + +TN+PN++A+
Sbjct: 271 SGKTLD------VDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAI 324
Query: 65 GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
GDV ++ LTPVA+ G ++GN + D+ VA+ VF+ G GL EE A +
Sbjct: 325 GDVT-DRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAK 383
Query: 125 LYGADNLEIYHAYYKP 140
+ + + +Y + + P
Sbjct: 384 KF--EKVAVYESSFTP 397
Score = 43.4 bits (102), Expect = 1e-04
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 265 VLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
VLG+H +G ++ E+IQ +K +T+G+HPT AEE
Sbjct: 423 VLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEEL 467
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 76.4 bits (188), Expect = 2e-15
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD 66
D E D VL A GR T+ + GV++ A K+D + +TNIP+++A+GD
Sbjct: 280 ITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGD 338
Query: 67 VLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELY 126
V + + LTPVA+ G A ++G T+ DY+NVA VF VGLSEE+A E
Sbjct: 339 VTN-RINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQA 397
Query: 127 GADNLEIYHAYYKPTEFFIPQR 148
D L ++ + + P + I R
Sbjct: 398 KGDIL-VFTSSFNPMKNTISGR 418
Score = 73.7 bits (181), Expect = 2e-14
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 239 TEFFIPQRNP-----QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFE 293
T F P +N ++ +K++ + A KVLG GP+A E++QG A A+KCG T
Sbjct: 405 TSSFNPMKNTISGRQEKTVMKLIVD-AETDKVLGASMCGPDAPEIMQGIAVALKCGATKA 463
Query: 294 TLESTVGIHPTLAEEF-TRVTITKRSGEDPTPQS 326
+STVGIHP+ AEEF T ++T+R P++
Sbjct: 464 QFDSTVGIHPSAAEEFVTMRSVTRRVTAKGKPKT 497
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 72.5 bits (179), Expect = 3e-14
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVK-----VIPENAKIDSDNEQTNIPNVFAV 64
K D VL+A GRR T+ + N G++ + QT++P ++A
Sbjct: 250 GKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT-----QTSVPGIYAA 304
Query: 65 GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
GDV KP L A G++ A G+ + Y + + VFT + VGL+EE+ +
Sbjct: 305 GDVNG-KPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKA 363
Query: 125 LYGA 128
Sbjct: 364 AGID 367
Score = 51.3 bits (124), Expect = 3e-07
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+KV ++ ++LG H IGP+A +I A A++ GLT E L HPTL+E
Sbjct: 391 VKVYADKKT-GRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSE 444
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 70.9 bits (175), Expect = 1e-13
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKV----IPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
D VL+A+GRR TE + GVK I +D + +TN+PN++A+GD++ P
Sbjct: 262 DYVLVAVGRRPNTENLGLEELGVKTDRGFIE----VD-EQLRTNVPNIYAIGDIV-GGPM 315
Query: 74 LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
L A G + A + GN +DY+ + +T E VGL+E KA+E ++++
Sbjct: 316 LAHKASAEGIIAAEAIAGN-PHPIDYRGIPAVTYTHPEVASVGLTEAKAKE--EGFDVKV 372
Query: 134 YHAYYK 139
+
Sbjct: 373 VKFPFA 378
Score = 52.5 bits (127), Expect = 1e-07
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 265 VLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
VLG H +G A E+IQ A+ T E L T+ HPTL+E
Sbjct: 404 VLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSE 446
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 69.2 bits (170), Expect = 4e-13
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKP 72
YD VL+A+GR + AGV+V E I D + +TN+P++FA+GD++ + P
Sbjct: 260 PQRYDAVLVAVGRVPNGKLLDAEKAGVEV-DERGFIRVDKQCRTNVPHIFAIGDIVGQ-P 317
Query: 73 ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
L V G + A + G D + + + +T E VGL+E++A+E
Sbjct: 318 MLAHKGVHEGHVAAEVIAGK-KHYFDPKVIPSIAYTEPEVAWVGLTEKEAKE 368
Score = 46.9 bits (112), Expect = 9e-06
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+VLG +G NAGE++ A++ G E + T+ HPTL E
Sbjct: 406 RVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 449
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 65.3 bits (160), Expect = 8e-12
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
D ++++IGR T+ + G+K+ E I D+ +TN+PNV+A+GDV+ P L
Sbjct: 272 EVDKLIVSIGRVPNTDGLGLEAVGLKL-DERGFIPVDDHCRTNVPNVYAIGDVV-RGPML 329
Query: 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
A + G +A R+ G +DY + ++T E VG +E++ +
Sbjct: 330 AHKAEEEGVAVAERIAGQ-KGHIDYNTIPWVIYTSPEIAWVGKTEQQLKA 378
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 260 AAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
A ++LG+H IGPNA E+I A++ + E + HPTL+E
Sbjct: 412 AKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSE 459
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 64.0 bits (156), Expect = 3e-11
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
+ E + VL+++GR+ ++ + AGV+ + ++ ++ QTN+P+++A GDV+
Sbjct: 250 GSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVN-EHMQTNVPHIYACGDVIG 308
Query: 70 EKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
+L VA G A G +++Y V ++T E VGL+E++A E YG
Sbjct: 309 -GIQLAHVAFHEGTTAALHASGE-DVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG 364
Score = 36.2 bits (84), Expect = 0.022
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 253 LKVVCERAAP--QKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+KV+ E P Q+++G+ IGP A E+I + +T + +E + HPTL+E
Sbjct: 389 VKVIVE---PKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSE 442
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 62.5 bits (152), Expect = 7e-11
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELT 75
+D +L A GR+ TE + N +++ A D QT++P VFAVGDV + P+ T
Sbjct: 241 RFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDV-NGGPQFT 299
Query: 76 PVAVQAGKLLAARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
+++ +++ L G+G+ T D NV TT+F VGL+E++A+E
Sbjct: 300 YISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKE 349
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 62.1 bits (151), Expect = 9e-11
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPELTP 76
D +L+A GRR T+ + AGVK + E I D +T+ P ++A GDV +L
Sbjct: 256 DELLVATGRRPNTDGLGLEKAGVK-LDERGGILVDETLRTSNPGIYAAGDVT-GGLQLEY 313
Query: 77 VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
VA + G + A G ++D + VFT VGL+E +A++
Sbjct: 314 VAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQK 361
Score = 54.0 bits (130), Expect = 4e-08
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 17/86 (19%)
Query: 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE-- 307
R ++K+V E KVLG+ + P A EVI A A++ G+T + L T+ PT+AE
Sbjct: 386 RGFIKLVAEPGT-GKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGL 444
Query: 308 -----EFTRVTITKRSGEDPTPQSCC 328
F R D + SCC
Sbjct: 445 KLAAQTFYR---------DVSKLSCC 461
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 60.3 bits (147), Expect = 4e-10
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPELTP 76
D VL+++GRR TE + N + V E I D+ QT +++A+GDV+ E P+L
Sbjct: 271 DKVLVSVGRRPNTEGIGLENTDIDV--EGGFIQIDDFCQTKERHIYAIGDVIGE-PQLAH 327
Query: 77 VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
VA+ G++ A + G DY + +T E VGL+EE+A+E
Sbjct: 328 VAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKE 375
Score = 37.6 bits (88), Expect = 0.008
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
++KVV +LG+ +GP+ E+I +A A++ G + T+ HPTL+E
Sbjct: 402 FVKVVA-DRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAI 458
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 56.7 bits (138), Expect = 5e-09
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
+L+A+GR T++ + AGV+ D +T P ++A GD + + T
Sbjct: 261 SHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDC-NGRGAFTHT 319
Query: 78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
A +++AA L G ++ + V +T VG++E +A +
Sbjct: 320 AYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARK 366
Score = 44.0 bits (105), Expect = 7e-05
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
++LG +G + E+I A+ G + TL + IHPT++E
Sbjct: 404 RILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 53.9 bits (130), Expect = 2e-08
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 17 YDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV 67
D VL+AIGRR TE + AGV++ +D + +T++P ++A GDV
Sbjct: 230 ADVVLVAIGRRPNTEL--LEQAGVELDERGYIVVD-EYLRTSVPGIYAAGDV 278
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 54.6 bits (131), Expect = 3e-08
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
+ +L++ GR A T + + GV A + + +T+ P+++A GD + P+ V
Sbjct: 273 EKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDC-SDLPQFVYV 331
Query: 78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
A AG + G G +D + +FT + VGLSE KA
Sbjct: 332 AAAAGSRAGINMTG-GNATLDLSAMPAVIFTDPQVATVGLSEAKAH 376
Score = 34.1 bits (78), Expect = 0.093
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
++K+V E +K++G + GE+IQ A A+ +T E L + + T+ E
Sbjct: 402 DGFIKLVAEEGT-RKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGL 460
Query: 310 TRVTITKRSGEDPTPQSCC 328
T R D SCC
Sbjct: 461 KLCAQTFRK--DVKELSCC 477
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 54.8 bits (132), Expect = 3e-08
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
D +L+A GR T A+ AGV V + A + +T++P+++A GD ++P+ V
Sbjct: 355 DKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCT-DQPQFVYV 413
Query: 78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
A AG A + G G +D + VFT + VG SE +A
Sbjct: 414 AAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEA 457
Score = 30.9 bits (70), Expect = 1.0
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE-- 307
R ++K+V E +++G+ + P AGE+IQ A A++ +T + L + + T+ E
Sbjct: 484 RGFIKLVIE-EGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGL 542
Query: 308 EFTRVTITKRSGEDPTPQSCC 328
+ T K D SCC
Sbjct: 543 KLAAQTFNK----DVKQLSCC 559
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 53.4 bits (129), Expect = 7e-08
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHEKPELTP 76
D +L+A GR + + AGV V E+ ++ D Q T+ VFA+GDV +L
Sbjct: 252 DVLLVATGRVPNGDLLDAAAAGVDVD-EDGRVVVDEYQRTSAEGVFALGDV-SSPYQLKH 309
Query: 77 VAVQAGKLLAARL-YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
VA +++ L + + D++ V VFT + VGL+E +A
Sbjct: 310 VANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARA 358
Score = 34.9 bits (81), Expect = 0.048
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETL-ESTVGIHPTLAE 307
K++ +R ++LG H IGP A +IQ A+ GL + IHP L E
Sbjct: 387 KLIADRDT-GRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPE 440
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 50.5 bits (121), Expect = 6e-07
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 17 YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH------E 70
D V++A G + +E ++G+K+ A ++ QT++PN++A GDV +
Sbjct: 222 ADMVILATGIKPNSE--LAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITK 279
Query: 71 KPE---LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEEL-Y 126
KP L A + G++ + GN T F L G++E +A++L
Sbjct: 280 KPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNI 339
Query: 127 GADNLEIY---HAYYKP 140
+ + HA Y P
Sbjct: 340 DYKTVFVKAKTHANYYP 356
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 49.6 bits (118), Expect = 1e-06
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
D +L+A GR+ T NAG+ V A + T N++A+GDV + T +
Sbjct: 244 DALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTG-GLQFTYI 302
Query: 78 AVQAGKLLAARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGAD 129
++ +++ L G G + D +NV +VF VG++EE+A E GAD
Sbjct: 303 SLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARE-SGAD 354
Score = 28.4 bits (63), Expect = 6.6
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
N R LK + + Q++LG + ++ E+I + GL + L + HP+++
Sbjct: 372 NDTRGVLKAIVDNKT-QRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMS 430
Query: 307 E 307
E
Sbjct: 431 E 431
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 49.3 bits (118), Expect = 1e-06
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGD---VLH---EK 71
D V++A G + TE + + G+K + A I + +T+I N++A GD + + K
Sbjct: 236 DVVIVATGVKPNTE--FLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNK 293
Query: 72 PELTPVAVQA---GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
P+A A G+++ L G + A LE GL+EE+A++L G
Sbjct: 294 NVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKL-GI 352
Query: 129 DNLEIY-----HAYYKPTEFFIPQRNPQRCYLKFIYHA 161
D ++ H Y P + Y+K IY A
Sbjct: 353 DYKTVFIKDKNHTNYYP--------GQEDLYVKLIYEA 382
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 48.9 bits (117), Expect = 2e-06
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKPELTP 76
D VL AIG E + GV + A ID D +TN+P+++A+GDV K +L
Sbjct: 263 DKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVT-AKLQLAH 320
Query: 77 VAVQAGKLLAARLYGNGTTQM--DYQNVATTVFTPLEYGCVGLSEEKAEE 124
VA +A ++AA T DY+ + F + GL+EE+A E
Sbjct: 321 VA-EAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQARE 369
Score = 36.5 bits (85), Expect = 0.016
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 265 VLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+LG H IGP+ E++ A K LT E L V HPTL+E
Sbjct: 408 LLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSE 450
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 48.2 bits (115), Expect = 3e-06
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKP-EL 74
T D +L+A GR + AGV+V + + +T+ V+A+GDV P +L
Sbjct: 253 TADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDV--SSPYQL 310
Query: 75 TPVAVQAGKLLAARL-YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
VA +++ L + N +M + V + VFT + VGL+E++A E
Sbjct: 311 KHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEARE 361
Score = 35.9 bits (83), Expect = 0.024
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTF-ETLESTVGIHPTLAE 307
K++ +R K+LG H IGP A +IQ A+ GL E IHP L E
Sbjct: 390 KLIADRDT-GKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPE 443
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 48.0 bits (114), Expect = 3e-06
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
+ +L+A GR TE + + GV+ +ID ++ QT + ++A GD ++P+ V
Sbjct: 263 EQLLVATGRTPNTENLNLESIGVETERGAIRID-EHLQTTVSGIYAAGDCT-DQPQFVYV 320
Query: 78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
A G A + G G +D + +FT + VGLSE +A+
Sbjct: 321 AAAGGSRAAINMTG-GDASLDLSAMPEVIFTDPQVATVGLSEAEAQA 366
Score = 34.1 bits (78), Expect = 0.093
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE--EF 309
++K+V ER + ++LG+ + AGE+IQ A++ +T + + + T+ E +
Sbjct: 393 FIKMVAERGS-GRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKL 451
Query: 310 TRVTITKRSGEDPTPQSCC 328
T TK D SCC
Sbjct: 452 CAQTFTK----DVKQLSCC 466
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 47.8 bits (115), Expect = 4e-06
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKV-----IPENAKIDSDNEQTNIPNVFAVGDVLHEKP 72
D +L A GR T+ + NAG++ + N +N QT +P+++AVGDV+ P
Sbjct: 262 DCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-----ENYQTAVPHIYAVGDVIG-FP 315
Query: 73 ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
L ++ G++ A G T + +++ T ++T E VG +E++ E
Sbjct: 316 SLASASMDQGRIAAQHAVGEATAHL-IEDIPTGIYTIPEISSVGKTEQELTAAKVP--YE 372
Query: 133 IYHAYYK 139
+ A +K
Sbjct: 373 VGRARFK 379
Score = 32.4 bits (75), Expect = 0.32
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
LK++ R ++LG+H G A E+I A ++ T E +T +PT+AE
Sbjct: 394 LKILFHRET-LEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE 447
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 46.8 bits (111), Expect = 1e-05
Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKV----IPENAKIDSDNE-QTNIPN 60
+M+ + E D+ L+A GR+ T + +++ + + + E Q N
Sbjct: 405 KKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDN 464
Query: 61 VFAVGD-----VLHEKPELTPVAV------QAGKLLAARLYGNGTTQMDYQNVATTVFTP 109
+F +GD +L + V + + + + + + Y+N+ + +T
Sbjct: 465 IFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTT 524
Query: 110 LEYGCVGLSEEKAEELYGADNLEIYHAYYK 139
E +GL+E++A+ELY DN+ + ++YK
Sbjct: 525 PELAFIGLTEKEAKELYPPDNVGVEISFYK 554
Score = 35.7 bits (82), Expect = 0.030
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 263 QKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+++LGM +G A +I A+ L+ + L V HPT++E
Sbjct: 600 KEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISE 644
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 44.1 bits (104), Expect = 6e-05
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
D VL+AIGRR T+ + G+ + + +D+ +T++P V+ +GDV P L
Sbjct: 266 DYVLVAIGRRPYTQGLGLETVGL-ETDKRGMLANDHHRTSVPGVWVIGDVT-SGPMLAHK 323
Query: 78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEE--KAE 123
A R+ G +++Y + ++T E VG +EE KAE
Sbjct: 324 AEDEAVACIERIAGK-AGEVNYGLIPGVIYTRPEVATVGKTEEQLKAE 370
Score = 39.8 bits (93), Expect = 0.002
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+ K++ + A +VLG+H +GP+ E+I + A++ + E + T HPT +E
Sbjct: 396 FAKILAD-ARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSE 450
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 42.7 bits (101), Expect = 2e-04
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIP-ENAKIDSDNEQTNIPNVFAVGDVLHEK 71
D DTV++AIG + + G+K+ K+D + +QT+IP VFA GD +
Sbjct: 370 KTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA 429
Query: 72 PELTPVAVQAGK 83
+ A+ G+
Sbjct: 430 ALVV-WAIAEGR 440
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 40.7 bits (96), Expect = 7e-04
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKP 72
F DTV+ AIG T A G+++ + + + T+ VFA GDV+ P
Sbjct: 271 FVLEADTVVFAIGEIP-TPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVT-GP 328
Query: 73 ELTPVAVQAGKLLAAR 88
A+++G L AA+
Sbjct: 329 SKIGKAIKSG-LRAAQ 343
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 39.1 bits (92), Expect = 0.002
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 20 VLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVA 78
LMA+G T + AGV++ P + I D +T++P ++A GD P L VA
Sbjct: 266 ALMAVGSVPNTAGLGLEEAGVELTP-SGHITVDRVSRTSVPGIYAAGDCTGVLP-LASVA 323
Query: 79 VQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
G++ G + + + VA+ VFT E VG+S+ +
Sbjct: 324 AMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDS 369
Score = 33.7 bits (78), Expect = 0.14
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTL 305
++K+ C R V+G + P A E+I A AV+ LT + L T ++P+L
Sbjct: 396 FVKLFC-RPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSL 448
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 38.4 bits (89), Expect = 0.004
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKI--DSDNEQTNIPNVFAVGDV---- 67
E D V++ G R ++A + + D + P+V+A GDV
Sbjct: 223 EIKADLVIIGPGERPNVV--LANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP 280
Query: 68 -----LHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
+ L +AV AG++ A + G V + V L GL+E K
Sbjct: 281 AAETGKGGRIALWAIAVAAGRIAAENIAGALRIPGLLGTVISDVGD-LCAASTGLTEGK- 338
Query: 123 EELYGADNLEIYHAYYKPTEFFIPQRNP 150
E L + P P
Sbjct: 339 -ERGIDVVLVVSGG-KDPRAHLYPGAEL 364
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 37.9 bits (89), Expect = 0.006
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 18 DTVLMAIGRRALTEETAVSNA-GVKVIPENAKIDSDNE-QTNIPNVFAVGD-VLHEKPEL 74
D V+ AIG+ +S G+++ I D +T++P VFA GD V
Sbjct: 377 DLVIKAIGQTP--NPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA--T 432
Query: 75 TPVAVQAGKLLAA 87
AV GK A
Sbjct: 433 VVWAVGDGKDAAE 445
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 36.4 bits (84), Expect = 0.020
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVL 68
D V++AIG + +K + ++++T+IP VFA GD++
Sbjct: 377 DAVIVAIGNGS--NPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDII 425
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 36.3 bits (85), Expect = 0.020
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPE-NAKIDSDNEQTNIPNVFAVGD 66
D VL+A+G E ++ GV++ + QT+ P VFA GD
Sbjct: 390 DLVLLAMGFTG-PEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 35.5 bits (82), Expect = 0.039
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPE-NAKIDSDNEQTNIPNVFAVGDVLHEK 71
F DTV+ AIG++ + AG+ K+D + QT++ VFA GD +
Sbjct: 422 FTLQADTVISAIGQQ--VDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCV-TG 478
Query: 72 PELTPVAVQAGKLLA 86
++ AV+ GK A
Sbjct: 479 ADIAINAVEQGKRAA 493
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 35.3 bits (82), Expect = 0.041
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
DTV+ AIG + TE + G+ + + + N +T++ NV+ +GDV
Sbjct: 769 DTVITAIGEQVDTE--LLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQR 818
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 35.1 bits (81), Expect = 0.048
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 21/92 (22%)
Query: 15 DTYDTVLMAIGRRALTEETAVSNAGVKV-----IPENAKIDSDNEQTNIPNVFAVGDVL- 68
+ YD ++ +G ++ + ++ +K+ IP N D +TN+PN++A+GD++
Sbjct: 228 EHYDMIIEGVGTHPNSK--FIESSNIKLDDKGFIPVN-----DKFETNVPNIYAIGDIIT 280
Query: 69 ----H-EKPELTPVAV---QAGKLLAARLYGN 92
H + P P+A +A ++A ++ GN
Sbjct: 281 SHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 34.8 bits (80), Expect = 0.077
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE--QTNIPNVFAVGDVL 68
DTV+ A+G + T+ + G+ + E + +TNI NVF +GD
Sbjct: 766 DTVIAAVGEQVDTD--LLQKNGIP-LDEYGWPVVNQATGETNITNVFVIGDAN 815
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 33.4 bits (77), Expect = 0.15
Identities = 28/121 (23%), Positives = 39/121 (32%), Gaps = 31/121 (25%)
Query: 17 YDTVLMAIGRRA------LTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV-LH 69
DTV+ A G RA L+ + V + + P++FA GD
Sbjct: 251 ADTVVWAAGVRASPLLKDLSGLETDRRGRLVV-------NPTLQVPGHPDIFAAGDCAAV 303
Query: 70 EKPELTP----VAVQAG----KLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
P P A Q G K + ARL G Y++ T L +
Sbjct: 304 IDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDKGT---------LASLGDFS 354
Query: 122 A 122
A
Sbjct: 355 A 355
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 33.0 bits (76), Expect = 0.18
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 56 TNIPNVFAVGDVLHEKPELTP---V-AVQAGKLLAARL 89
+ P+VFA GD P V AV+ +LAA L
Sbjct: 269 LSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANL 306
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 33.3 bits (76), Expect = 0.19
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 1 MRIATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPN 60
+R G+S++ D ++MA G R E AVS AG+KV I +D+ QT+ P+
Sbjct: 217 IRFKDGSSLEA------DLIVMAAGIRPNDE-LAVS-AGIKV--NRGIIVNDSMQTSDPD 266
Query: 61 VFAVGDV 67
++AVG+
Sbjct: 267 IYAVGEC 273
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 32.6 bits (75), Expect = 0.23
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDV 67
+ E D V +AIG TE G+ V+ EN I D E +T++P +FA GDV
Sbjct: 220 GEEKELPVDGVFIAIGHLPNTE----LLKGLGVLDENGYIVVDEEMETSVPGIFAAGDV 274
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 32.6 bits (75), Expect = 0.26
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 18 DTVLMAIGRRALTEETAVSN-AGVKVIPENAKIDSDNE-QTNIPNVFAVGD 66
D V+ A G R TA++ AG+ V N I D+ QT+ P+++A+GD
Sbjct: 229 DAVIAAAGLRP---NTALARRAGLAV---NRGIVVDSYLQTSAPDIYALGD 273
>gnl|CDD|227138 COG4801, COG4801, Predicted acyltransferase [General function
prediction only].
Length = 277
Score = 32.5 bits (74), Expect = 0.27
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 12/125 (9%)
Query: 16 TYDTVLMAIGR----RALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEK 71
Y +VL+ +GR L EE S+ G +IP + + + + L
Sbjct: 125 LYLSVLLRLGRAEEAEKLLEELFESDGGPLIIPADYIVSDERIKVGDDAFVGTVCRLEGN 184
Query: 72 PELTPVAVQAGKL---LAAR---LYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEEL 125
+ ++ + R L GN + VA F L + A +
Sbjct: 185 VKAGVISGCGYYGFGSIRGRNDILVGNNEPI--HGPVANRGFVKTISNVEVLGDISAHPV 242
Query: 126 YGADN 130
+ A++
Sbjct: 243 HLAES 247
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 32.2 bits (74), Expect = 0.37
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 18 DTVLMAIGRRA----LTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
D V++AIG+ L V V ++D + T P VFA GD++ P
Sbjct: 370 DLVVLAIGQDIDSAGLESVPGVEVGRGVV-----QVDPNFMMTGRPGVFAGGDMV-PGPR 423
Query: 74 LTPVAVQAGKLLAAR 88
A+ GK AAR
Sbjct: 424 TVTTAIGHGK-KAAR 437
>gnl|CDD|234267 TIGR03573, WbuX, N-acetyl sugar amidotransferase. This enzyme has
been implicated in the formation of the acetamido moiety
(sugar-NC(=NH)CH3) which is found on some
exopolysaccharides and is positively charged at neutral
pH. The reaction involves ligation of ammonia with a
sugar N-acetyl group, displacing water. In E. coli (O145
strain) and Pseudomonas aeruginosa (O12 strain) this
gene is known as wbuX and ifnA respectively and likely
acts on sialic acid. In Campylobacter jejuni, the gene
is known as pseA and acts on pseudaminic acid in the
process of flagellin glycosylation. In other Pseudomonas
strains and various organisms it is unclear what the
identity of the sugar substrate is, and in fact, the
phylogenetic tree of this family sports a considerably
deep branching suggestive of possible major differences
in substrate structure. Nevertheless, the family is
characterized by a conserved tetracysteine motif
(CxxC.....[GN]xCxxC) possibly indicative of a metal
binding site, as well as an invariable contextual
association with homologs of the HisH and HisF proteins
known as WbuY and WbuZ, respectively. These two proteins
are believed to supply the enzyme with ammonium by
hydrolysis of glutamine and delivery through an ammonium
conduit.
Length = 343
Score = 31.1 bits (71), Expect = 0.72
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 23/142 (16%)
Query: 96 QMDYQNVATTVFTPLE--YGCVGLSEEKAEEL----YGADNLEIYHAYYKPTEFFIPQRN 149
+Y + P E Y G+ ++ +L Y + +
Sbjct: 171 AEEYGGDSEEELNPDEWKYNKRGIDAANIKDFSDKGLSERDLYAY--------TYPDKEK 222
Query: 150 PQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQR--CYLKI 207
Q +K IY YY + ++ Y + ++ N + I
Sbjct: 223 LQSKGVKVIYLGYYVKW-------DKKKNYEFIKKRGGWREGPHPGTYENYKHIDSIFTI 275
Query: 208 YHAYYKPTEFFIPQRNPQRCYL 229
+H Y K +F +
Sbjct: 276 FHDYLKYLKFGFGRATDHASID 297
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 30.7 bits (70), Expect = 1.0
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDV 67
D V+MA+G R E AG+ V N I ++ QT+ P+++AVG+
Sbjct: 233 DLVVMAVGIRPNDE--LAKEAGLAV---NRGIVVNDYMQTSDPDIYAVGEC 278
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 30.6 bits (69), Expect = 1.2
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPE-NAKIDSDNEQTNIPNVFAVGD 66
++VFE D VL+A+G E+ + + GVK N D+ T+IP VFA GD
Sbjct: 398 EEVFEA--DLVLLAMGFVG-PEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGD 452
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 30.4 bits (69), Expect = 1.6
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 18 DTVLMAIG---RRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD 66
DTV+M++G ++ T G+K+ D + T+ VFA GD
Sbjct: 386 DTVIMSLGTSPNPLISSTTK----GLKINKRGCIVADEETGLTSKEGVFAGGD 434
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 29.5 bits (67), Expect = 2.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
D V +AIG TE + +++ + + +T++P VFA GDV
Sbjct: 227 DGVFIAIGHEPNTE---LLKGLLELDENGYIVTDEGMRTSVPGVFAAGDV 273
>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 292
Score = 29.2 bits (66), Expect = 3.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 262 PQKVLGMHFIGP----NAGEVIQGYAAAVKCGLTFETLESTV---GIHPTLAEEF 309
P++ +G+HF+ P E+I+G A TFE + V G T+AE+F
Sbjct: 134 PERFIGIHFMNPVPVMKLVELIRGIATDEA---TFEAAKEFVTKLGKTITVAEDF 185
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 29.0 bits (66), Expect = 3.7
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 49 IDSDNEQTNIPNVFAVGDV 67
+D+ T++P VFA GD
Sbjct: 468 VDARG-ATSVPGVFAAGDC 485
>gnl|CDD|237113 PRK12486, dmdA, putative dimethyl sulfoniopropionate demethylase;
Reviewed.
Length = 368
Score = 28.6 bits (64), Expect = 4.4
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 66 DVLHEKPELTPVAVQAGKL--LAARLYGNGTTQMDY 99
DVL +P+++P+AVQ K L AR++G + +
Sbjct: 141 DVLVVEPDVSPLAVQGPKADALMARVFGEAIRDLRF 176
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 28.6 bits (64), Expect = 4.5
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 57 NIPNVFAVGDV--LHEK--PELTPVAVQAGKLLAARLYGN 92
IPNVFA+GD E+ P L VA Q G LA
Sbjct: 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNE 346
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 28.8 bits (64), Expect = 4.6
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 8 SMDKVFEDTYDTVLMAIGRRA---LTEET---AVSNAGVKVIPENAKIDSDNEQTNIPNV 61
+ + DTV+ A+G +A +T+ T A++ G + ++ K++ + TN+P V
Sbjct: 666 PTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWG-NIAADDGKLE-STQSTNLPGV 723
Query: 62 FAVGDVL 68
FA GD++
Sbjct: 724 FAGGDIV 730
>gnl|CDD|220281 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup. Ndc1 is a
nucleoporin protein that is a component of the Nuclear
Pore Complex, and, in fungi, also of the Spindle Pole
Body. It consists of six transmembrane segments, three
lumenal loops, both concentrated at the N-terminus and
cytoplasmic domains largely at the C-terminus, all of
which are well conserved.
Length = 557
Score = 28.8 bits (65), Expect = 5.0
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 7 ASMDKVFEDTYDTVLMAIGR--RALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
AS+D ED Y V + R L + ++P +AK S T +P V +
Sbjct: 468 ASLD---EDKYGVVQNDVPEILRLLERLIGALDKYSDLLPASAKPTSQAGDTRVPLVSVL 524
Query: 65 GDVLHE 70
D L
Sbjct: 525 RDALKS 530
>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 282
Score = 28.0 bits (63), Expect = 6.9
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 262 PQKVLGMHFIGP----NAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
P KV+GMHF P E+I+G A + E L +G P +
Sbjct: 133 PDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVKNA 184
>gnl|CDD|217702 pfam03734, YkuD, L,D-transpeptidase catalytic domain. This family
of proteins are found in a range of bacteria. It has
been shown that this domain can act as an
L,D-transpeptidase that gives rise to an alternative
pathway for peptidoglycan cross-linking. This gives
bacteria resistance to beta-lactam antibiotics that
inhibit PBPs which usually carry out the cross-linking
reaction. The conserved region contains a conserved
histidine and cysteine, with the cysteine thought to be
an active site residue. Several members of this family
contain peptidoglycan binding domains. The molecular
structure of YkuD protein shows this domain has a novel
tertiary fold consisting of a beta-sandwich with two
mixed sheets, one containing five strands and the other,
six strands. The two beta-sheets form a cradle capped by
an alpha-helix. This family was formerly called the
ErfK/YbiS/YcfS/YnhG family, but is now named after the
first protein of known structure.
Length = 89
Score = 26.2 bits (58), Expect = 8.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 113 GCVGLSEEKAEELY 126
GC+ LS E A+ELY
Sbjct: 65 GCIRLSNEDAKELY 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.424
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,202,177
Number of extensions: 1650477
Number of successful extensions: 1314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1260
Number of HSP's successfully gapped: 103
Length of query: 332
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 235
Effective length of database: 6,635,264
Effective search space: 1559287040
Effective search space used: 1559287040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)